LOCUS       DASGBY010000001        56006 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.001, whole genome shotgun sequence.
ACCESSION   DASGBY010000001 DASGBY010000000
VERSION     DASGBY010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 56006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 56006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..56006
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.001"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            175..1428
                     /locus_tag="U1396_000001"
     CDS             175..1428
                     /locus_tag="U1396_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM5341234.1"
                     /translation="MKLQEGVDLHFIDTDQFTTNRIRIRFAAEMSEATVAGRVLVANI
                     FEMGNQEFQTAQAVRRRLAELYGAQFSTSVSKRGRVHCVDVTISYVSPRHLPENEDIT
                     VEILDFLYTCIFRPLKKGRGFDSQIFEVEKTNLINFLQSEIEDNFYHADVEMSKLFYK
                     DPSLQIPRVGRLDLVEKETAESTFQIYRNMLRMDKIDIFVLGKVDREQVKRKLEDFGF
                     TYRNPKLELEYNQEYSNITQEKIERKQARQSILELAYHLQVVYNDVNYPALMVFNGLL
                     GAFSHSKLFMNVREKESLAYTIGSQVSIFSGMLKVYAGISHENRLRVMKLISKQLLDL
                     KCGKFTEEELELTKNMLIHSATLAQDRQNNLIEQVYNQVTLGNRNLSWLDWIEAIKSV
                     SIEDVIRVGQMINLQAVYFMEGTEE"
     gene            1425..2708
                     /locus_tag="U1396_000002"
     CDS             1425..2708
                     /locus_tag="U1396_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM5341235.1"
                     /translation="MKLVEKKYPYMKESVFYGKVDNGLTVILLPKVDFHETYGILTTN
                     FGGIHTRFTLANGKSVVYPAGIAHFLEHKLFETENEEDIMNEFAKLGASANAYTSFRQ
                     TSYLFSTTQKVLESLSLLQSFVREPYFTEDNVEREQGIIEQEIEMYQDDADYRLFTGI
                     LSSLYPESPLAYDIAGTVESIAAITADDLHENFEVFYHPSNMNLFVIGNFDLEAVWKQ
                     ISSYQVAQMDNPAQSFELAGVQKLPIQEHLSEQFEVSTPKLAVGLRGNDEVDKETIQK
                     YRLSLQFLFAMLFGWTSKRYQQLYEQGKIDSSFQFQLEVTPEYHYLIISGDTQEPITL
                     SSILMKALRKFEDDADVTEDHLQLLKNEMYGDFIRSLNSLEFTASHFVSQYSEYENVF
                     DIPQMIQSLQLDDIREAGRRFIDHCDMTDFTIFPK"
     gene            2790..3647
                     /locus_tag="U1396_000003"
     CDS             2790..3647
                     /locus_tag="U1396_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5341236.1"
                     /translation="MRQKSIGEVLRTAREGRSWTFVDLQRITKIQAKYLQALEYNDFD
                     FIANSDDVQSILKAYAEALELDADVLLDAYETNSLVKYYEDGEEELRSSELKRSYKVR
                     KRKKNSYLPLIYLLLATGLIIIFVTYIVHSRLQNRASITPTTTSYSIVEQSVSEASSG
                     TETSSTEQAQSNSTSSSSSVTENVTISGSGSNIVATLKTVTYPVEVTVTAKNTTSWIS
                     LSDTLLEGGVTLTPDNPTVTTTVEEGVTSTTLILGVVKGVEVTVGGQKLNLSALTADT
                     GSITINFEQ"
     gene            3657..4196
                     /gene="pgsA"
                     /locus_tag="U1396_000004"
     CDS             3657..4196
                     /gene="pgsA"
                     /locus_tag="U1396_000004"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEM5341237.1"
                     /translation="MKKENIPNALTIGRILVIPIFILLLTVWDSTISHVLAALIFALA
                     SITDYLDGYLARKWQVVTNFGKFADPMADKILVMTAFIMLVELGFAPAWVVAIIICRE
                     LAVTGLRLLLVENGGTVLAAAMPGKIKTFSQMFAVIFLLLHWNAVGQITLYIALFFTL
                     YSGYDYFKGASFLFKDTFK"
     gene            4193..5029
                     /locus_tag="U1396_000005"
     CDS             4193..5029
                     /locus_tag="U1396_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM5341238.1"
                     /translation="MMNIIEVKNLKYKYNQEDERYTLNDVSFHVKQGEWLSIIGHNGS
                     GKSTTVRLIDGLLEAESGDIYIDGDALTIDNVWDKRRLIGMVFQNPDNQFVGATVEDD
                     VAFGLENQGIPLEEMRSRVDEALELVGMTDFKTREPARLSGGQKQRVAIAGVVALRPK
                     IIILDEATSMLDPEGRLDLIKIVREIKERHGMTVISITHDLDEVALSDRVIVMKNGQV
                     ESISTPNELFMREDLVDLDLDRPFTTELASSLRQTGLDLPLRYFTEEELEETLWELFS
                     KK"
     gene            5005..5847
                     /locus_tag="U1396_000006"
     CDS             5005..5847
                     /locus_tag="U1396_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM5341239.1"
                     /translation="MGIVLQEVSYTYQAGTPFEGRALFGVDLEIVDGSYTALIGHTGS
                     GKSTILQLLNGLNVPTEGRVVIDDVVITATSENKDIKQVRKKVGLVFQFPESQVFDET
                     VLKDVAFGPQNFGVSQEEAETIAREKLALVGIDESLFERSPFELSGGQMRRVAIAGIL
                     AMEPSILVLDEPTAGLDPAGRQELMDIFKKLHESGMTIVLVTHLMDDVANYADFVYIM
                     EKGKLVRSGKPVDIFQEVDFLESIQLGVPKITKFAANLERRGFVFERLPITIEEFTGM
                     VTHG"
     gene            5840..6634
                     /locus_tag="U1396_000007"
     CDS             5840..6634
                     /locus_tag="U1396_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5341240.1"
                     /translation="MDKLILGRYIPGDSIIHRLDPRSKLLAMFGFLLMIFWANNLVTN
                     ALLIAFVLGMVVLSRIRLSFFINGLKPMIGIILFTTFFQVFFTPGATILWEFWIFKLS
                     VEGLQQAAIIFVRFVLIIFFSTLLTLTTTPLSLADGIESGLAPLKKFKVPVHEIGLML
                     SMSLRFVPTLMDDTTRIMNAQRARGVDFNEGNLIQKVKSVIPILIPLFASSFKRADAL
                     ATAMEARGYQGGDGRTKYRILEWKLADTLAILVMLALAGLLFILKK"
     gene            6766..7320
                     /locus_tag="U1396_000008"
     CDS             6766..7320
                     /locus_tag="U1396_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009911037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5341241.1"
                     /translation="MNITLKKNLKTTIAGLVAGISLLTAGVVSAETYTVKSGDTLSEI
                     AETYNTTVEKLAEQNKITNLDFIHVGQVIELGDVTVKAVESSIEQTQSTSTSTATVTT
                     STYSSNLSAEDAAAKEWIAMKESSGSYDARNGIYIGRYQLTNTYLNGDYSPENQERVA
                     DAYVASRYGSWSAAKAFWLANGWY"
     gene            complement(7777..8649)
                     /gene="sdaAA"
                     /locus_tag="U1396_000009"
     CDS             complement(7777..8649)
                     /gene="sdaAA"
                     /locus_tag="U1396_000009"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEM5341242.1"
                     /translation="MFYTIEELVQQADNFSANVAELMIATEIELTGRSREEILTIMSR
                     NLTVMKASIVDGLTESKSVSGLTGGDAAKLDAYMKSGKTLSDSAVLSAARNAMAVNEL
                     NAKMGLVCATPTAGSAGCLPAVLGVAIEKLNLTEEQQLDFLFTAGAFGLVIANNASIS
                     GAEGGCQAEVGSASAMSAAALTLAAGGTPYQASQAICFVIKNMLGLICDPVAGLVEVP
                     CVKRNAMGASYAMVAADMALAGIESKIPVDEVINAMYQVGAALPTAFRETAEGGLAAT
                     PTGRRLTQEIFGED"
     gene            complement(8662..9333)
                     /gene="sdaAB"
                     /locus_tag="U1396_000010"
     CDS             complement(8662..9333)
                     /gene="sdaAB"
                     /locus_tag="U1396_000010"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HEM5341243.1"
                     /translation="MTNLKFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFGDEPT
                     EVEFQLYNSFAKTYRGHGTDVALVAGILGMDTDDPRIPDSLDIARERGIKVYWRVNKD
                     SNTPHPNTTRIIIKNDKKSISATGVSIGGGNIQVTELNGFSVNLNMNTPTIIIVHQDV
                     PGMIAKVTDVLSKYDINIAQMNVTREKAGEKAIMIIEVDARQCENSIAEIEKIPHLHN
                     VTFFN"
     gene            9548..10672
                     /gene="mnmA"
                     /locus_tag="U1396_000011"
     CDS             9548..10672
                     /gene="mnmA"
                     /locus_tag="U1396_000011"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEM5341244.1"
                     /translation="MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD
                     TDENGFCTATEDYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDV
                     MCNKEIKFKAFLDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQL
                     SQEQLQKTMFPLGHLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPA
                     QPGRMMTVDGRDMGEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVG
                     QGFYHESLMSTSLQASQVHFTRDMPEEFKLECTAKFRYRQPDSQVTVKVKGDKAEVIF
                     AEPQRAITPGQAVVFYDGQECLGGGMIDMAYKDGEACQYI"
     gene            complement(10715..11104)
                     /locus_tag="U1396_000012"
     CDS             complement(10715..11104)
                     /locus_tag="U1396_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000106206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM5341245.1"
                     /translation="MSTNLEIFNAYNNALIAGDFAALFETMADDIIWHQPGNHSTSGA
                     KIGKEVLGAHLATFAEKTNGTFKVVTNWVSDNDTLVAANVTFLGTRTDGEELNMNGID
                     LFRMEDGKIKEVWLFSADQTAEDAFWG"
     gene            11230..11556
                     /locus_tag="U1396_000013"
     CDS             11230..11556
                     /locus_tag="U1396_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341246.1"
                     /translation="MKKVSEYGICPFATTQKVLTGKWGLVIIYQLSTGTKRFNELQRL
                     IPGITQTMLTRHLRQLEEDRIISRTVYAEVPPRVEYSLTEMGEKFRSVLDAVEAWGLE
                     YIETLT"
     gene            11698..12159
                     /locus_tag="U1396_000014"
     CDS             11698..12159
                     /locus_tag="U1396_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM5341247.1"
                     /translation="MDFRTKVDNQIFGVRATALLIKDGKIFLTKDSKGRYYTIGGAVE
                     VNEVAADAVVREVKEELGIDSHVNQLAFVVENKFTQEGIHFHNIEFHFIVEPIGEIPE
                     EMIEDNLKQACEWIDVDKLVNLDVVPVFLAEKLPNWSGQVTHIMNMKEKTT"
     gene            12156..14072
                     /gene="mnmG"
                     /locus_tag="U1396_000015"
     CDS             12156..14072
                     /gene="mnmG"
                     /locus_tag="U1396_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEM5341248.1"
                     /translation="MTHTFAENYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMV
                     AFMPCNPSIGGSAKGIVVREIDALGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQAD
                     KAEYAAEMKRTVERQENLTLRQTMIDEILVEDGKVIGVRTATNQKFSAKAVVVTTGTA
                     LRGEIIIGDLKYSSGPNNSLASITLADNLKELGLEIGRFKTGTPPRVNARTINYEETE
                     IQPDDEKPNHFSFLSKDEDYLQDQIPCWLTYTNATSHEIINSNLHRAPMFSGIVKGIG
                     PRYCPSIEDKIVRFADKERHQLFLEPEGRNTDEIYVQGLSTSLPEDVQQDLIHSIKGL
                     ENAQMMRTGYAIEYDMVMPHQLRATLETKKISGLFTAGQTNGTSGYEEAAGQGIVAGI
                     NAALKVQGKPELILKRSDGYIGVMIDDLVTKGTVEPYRLLTSRAEYRLILRHDNADMR
                     LTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLESIKLKPIKETNEKVVAMGFKPLTD
                     ALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIELIETEVKYEGYIAKALDQVEKMK
                     RMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQASRISGVNPADISILMVYLEG
                     RSRSISKNKSKDSH"
     gene            14179..16140
                     /locus_tag="U1396_000016"
     CDS             14179..16140
                     /locus_tag="U1396_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEM5341249.1"
                     /translation="MKRFRFSTIHFVMIGVILFGLVALVHRFFPIGASTVFALLISLL
                     VLIALFIYQKHSYEFSELEQIEYLNNQANSGLMMLLDKMPVGVIKVRPDSNQVEWFNP
                     FAELIFAQENGEFDQKKLREIIDVGLDEERIYANFSGKRYAVNVDFDQGLFYFFDAST
                     EYSATNSLIGSRPVIGIISVDNYDELEDAVTDSQISQVNSFLAQFVSEFCHDYGIYYR
                     RGTMDRFYFFTDYAVLEKLIENKFSVIDKFREEAKKLDLGLTLSMGLAYGNENHHQIG
                     QVALQNLNMAEVRGGDQVVVKENDESKQPLFFGGGSASSVKRTRTRTRAMMTAVSDKL
                     KSVDAVFVVGHRNLDMDALGSAVGMQYFAQNIMNNAYTVYNPDEMAPDIARAIKKLSD
                     ENCSNLLTVEEAMKMVTFQSLLIMVDHSKIGLTLDKDFYDQFTQVVVVDHHRRDTDFP
                     NNAVLTYIESGASSASELVTELIQFQNDKHHKLNRIQSSLLMAGIMLDTKNFTSRVTS
                     RTFDVASYLRTRGSDSLEIQQIAATDFEEYRQINELILSGQRIEANVVIACADDTKEY
                     DNIIPSKAANTILDMAGIEAVFVVTRNTKGYVSISARSHSKINVQRIMEEMGGGGHFN
                     LAAAQVYDQTIAEVCEKLTDKIREEINGN"
     gene            16151..16603
                     /gene="rplI"
                     /locus_tag="U1396_000017"
     CDS             16151..16603
                     /gene="rplI"
                     /locus_tag="U1396_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEM5341250.1"
                     /translation="MKVIFLADVKGQGKKGEIKEVPTGYAQNFLIKKNLAKEATNQAI
                     SALRGQEKSKEKAHAEMIAEAEAIKAKLAEEATLVKFVEKVGPDGRTFGSITSKKIAE
                     ELDKQFGIKIDKRHIQLDHPIRAIGLIDVPVKTYQDVIGIINLSIKEA"
     gene            16635..17990
                     /gene="dnaB"
                     /locus_tag="U1396_000018"
     CDS             16635..17990
                     /gene="dnaB"
                     /locus_tag="U1396_000018"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM5341251.1"
                     /translation="MAELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFF
                     KHAHKLIFKAMIALSDRNEAIDATTMRNYLVNHGDLENIGGLAYLAEIISSVPTAANA
                     EFYAKIVAEKSNLRKLIARLTDAVNQAYEGADGSDDIIANAEKALIDVSEGASRSGFK
                     RIDDVLNINFDNLETRAKQTSDITGIATGYPALDAMTTGLHEEELIILAARPAVGKTA
                     FALNIAQNIGTKLGLTVAIFSLEMGAESLVDRMLASEGVINSRAIRTGHLTQEEWNKY
                     MVAQANLARASIYIDDTPGIKITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENR
                     QQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIV
                     AFLYRDDYYERGEQEDGGIPNNTVEVIIEKNRSGARGTVELMFQKEYNKFASISKRED
                     G"
     gene            17994..18245
                     /locus_tag="U1396_000019"
     CDS             17994..18245
                     /locus_tag="U1396_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001278154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341252.1"
                     /translation="MSDAFTDVAKMKQIKQDIKDHEGQIVELTLENGRKREKNKQGRI
                     VEVYQSLFIVEFEDPNNTFVESYTYSDILTEKILIHYLD"
     gene            18456..19067
                     /gene="rpsD"
                     /locus_tag="U1396_000020"
     CDS             18456..19067
                     /gene="rpsD"
                     /locus_tag="U1396_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014407971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEM5341253.1"
                     /translation="MSRYTGPSWKQARRLGLSLTGTGKELARRNYVPGQHGPNNRSKL
                     SEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRL
                     GLATTRRQARQFVNHGHILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVEATL
                     GRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML"
     gene            19134..19583
                     /locus_tag="U1396_000021"
     CDS             19134..19583
                     /locus_tag="U1396_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM5341254.1"
                     /translation="MWRKYFLLVLLAILVVGGAFFLSQSAATPNESDYVKAVKSYQAI
                     SIDEVEQKVQDEEEFILYIGRETCPYCRDFVPKLTEAVERSRATIYYLDSESDPNGKI
                     QQFRQSQGLATVPSLTYYKSGKLSGILRKGSQATLSEIENFLALQGQ"
     gene            19716..21233
                     /locus_tag="U1396_000022"
     CDS             19716..21233
                     /locus_tag="U1396_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HEM5341255.1"
                     /translation="MKKKAWLGLLMSLLAVLFLVACGGKSEKTATSSSSTTSSSSEEA
                     VSGASEKVYTDPSELKDSYDVIVVGSGGAGMSAAISAKDAGASVALLEKMPVIGGNTA
                     KSSAGMNASQTKFQEAEGIADTNDKFYEETLKGGKGTNDPELLRYLVDNSASAIDWLD
                     GMGITLSNLTTTGGMSEKRTHRPADGSAVGGYLVNGLYHNLVERKVPIFVNADVTKLQ
                     DKDGAVTGVEVKIAGETKQISAKAVVLATGGFGADLEMVAKLNPALKGYVTTNQEGST
                     GDGIALAESEGAATVDMEQIQIHPSVEQETSYLITEAVRGEGAILVNSKGERFVNELE
                     TRDKVSAAINSLDPNYAYVIFDDALKDRVKAIAQYEEKGLVKTGATLADLAKEIDLPA
                     DTLQTTLDTWNKAVADKNDAAFGRTSGMDHALNTGSYHAIKVAPGVHHTMGGVKINTN
                     TEVLKTDGSAISGLYAAGEVTGGVHGQNRIGGNAVADIIVFGRQAGEQAAGFAKK"
     gene            21319..22683
                     /locus_tag="U1396_000023"
     CDS             21319..22683
                     /locus_tag="U1396_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5341256.1"
                     /translation="MKKKIVLLLGAIAVIVLTWSAIAGQRQQSYAEAELRDQDKIWII
                     TDLHYLSQDLFDDGEAFSYIEKTAAGKDLRYGKERMEALVEQVGREHPSLLLVSGDLT
                     LNGEKQSMVELAQYFTEIEEQGTEVLVIPGNHDIASGWARAFKGDQQIVTDQVTAQQF
                     AELFAHHGYQQASSRDKASLSYLAKPFSNAWFLMIDSNIYSDGYGKGAPPTNGRINKE
                     TLEWIEIQLQAAKETGVSLIPVVHHNVLQQHAMLSKGYTLDNAADLKTLFNQYGIQFG
                     FSGHTHSQNIVKEDLGQVNYTEVVNGAFSIYPAIIGQLSLDDTSIHYQKTQLDMASWA
                     DKHQPSDPNLQDHVTYLQTVFDNTSDIMVHNMLNDEGWYDGETADAISQFIMPANRAY
                     FSGEKLDQTWLDEKVFPSQAYQTLQAASPRSFLADYLDVIIKRSQNRDVEKLVLKTEK
                     DFVQ"
     gene            22847..23860
                     /locus_tag="U1396_000024"
     CDS             22847..23860
                     /locus_tag="U1396_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5341257.1"
                     /translation="MTLLSIAIPSYNSEAYLHYCVHSLVMGGDKVEILIINDGSSDRT
                     QEIAEELANQFSNVRAIYQENKGHGGAVNTGIREAKGKYFKVVDSDDWVDTRAYLKIL
                     ESLQALEDENTPVDAFISNFVYEKEGQSRKKSMSYQSTLPENRIFGWEDVGAFSKGQY
                     MMMHSLIYRTDLLREVGLVLPEHTFYVDNIFVFTPLQAVKTMFYLPVDFYRYFIGRND
                     QSVNESVMIKRIDQQLKVNRILVDNLDLEAIDNPDLRSYLLNHVEITTIISCALLNRA
                     GTAEHMMKKQELWHYIRDNNPALFKIVRKGLLGQLTNLYGYPGRKIFNAVYKIAKRIY
                     GFN"
     gene            23930..24841
                     /locus_tag="U1396_000025"
     CDS             23930..24841
                     /locus_tag="U1396_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5341258.1"
                     /translation="MQRLGQTGLEVSRIGLGCMRMASLTEQETAKVLDTVVGQGINFF
                     DHADIYGGGESEIRFAQGAKLAGLKREDLLLQSKCGIRKGYFDFSKDYILESVDGILK
                     RLDTEYLDVLALHRPDALMEAEEVAEAFYLLKKAGKVHHFGVSNQNIYQMELLQSYFD
                     QPLVVNQLQLSPAHTPLIDAGLHVNMKDDAATMRDGGLIDYCQLKKITIQAWSPFLID
                     LQRGIFANHPNYALLNQTIGEIAERYNVSHETIVVAWILRHPAKIQTIVGSMNPERLK
                     KIAQASQIILTRPEWYDIYRSAGNILP"
     gene            24851..25303
                     /locus_tag="U1396_000026"
     CDS             24851..25303
                     /locus_tag="U1396_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341259.1"
                     /translation="MQWEIKAFDQLSLQELYTILTLRTDVFVVEQACPYPEIDGKDPS
                     CLHLLGTDNGELVAYLRILPAGLSYDEVSIGRVVIKPSHRGKGLGRPMMEQAIAYITT
                     EWKESQIKIGAQAYLEKFYQSLGFEPISEVYLEDDIPHLDMLYRKLVV"
     gene            25398..27149
                     /gene="aspS"
                     /locus_tag="U1396_000027"
     CDS             25398..27149
                     /gene="aspS"
                     /locus_tag="U1396_000027"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEM5341260.1"
                     /translation="MKRSMYAGRVRKEHVGQEITLKGWVGRRRDLGGLIFIDLRDREG
                     IMQLVINPESVEAEVMAKAESLRSEFVIEVTGTVVEREQANDNIPTGAVELQVTSLTV
                     LNTAKTTPFEIKDGIEASDDTRLRYRYLDLRRPEMLNNFKLRAAVTHSIRNYLDELEF
                     IDVETPMLTKSTPEGARDYLVPSRVSKGHFYALPQSPQITKQLLMNAGFDRYYQIVKC
                     FRDEDLRGDRQPEFTQVDLETSFLNEVEIQDIVEGLIAKVLKDTKGIDVTLPFPRMAY
                     DHAMNFYGSDKPDTRFEMLLQDLTELVKEVDFKVFSEAPVVKAIVVKGAADCYSRKDI
                     DKLTDYAKQFGAKGLAWVKVDKGELAGPVAKFLTGITENLTASLQLEDKDLVLFVADE
                     LEVANNTLGALRNRLAKEQGLIDESKFNFLWIVDWPMFEWSEEEGRYMSAHHPFTLPT
                     EETAHHLDGDLAQVRAVAYDIVLNGYELGGGSLRINQKDMQERMFKALGFSAEDAHEQ
                     FGFLLEAMDYGFPPHGGLAIGLDRFVMLLAGEDNIREVIAFPKNNKASDPMTQAPSTV
                     ASAQLEELALNITLENE"
     gene            27142..28074
                     /locus_tag="U1396_000028"
     CDS             27142..28074
                     /locus_tag="U1396_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5341261.1"
                     /translation="MNKFFRKQRVRFLRKARKNKFWSVILGISREKYAERISGSIIYG
                     LLSSIAVNFFFRPGNVYSSGVTGLAQIVSALAASYAGWNVPIAVVYYGLNIPLLILAW
                     YKIGYKFTIFTFITVSFSSFFIQFMPPVTLTTDPLVNAIFGGLMLGTGIGFALRNNVS
                     SGGTDIVSIIIRKKTGRQVGSISLIVNIMIMLIAGMTFGWQYALYSMVALFISSRMTD
                     AIFVKQKRMQAMIITNHPERVIKKIHKKLNRGVTIINGAEGAYNHEQKTILITIITRA
                     EFNDFKHIMKKADPKAFVSVADNVNIIGRFVESD"
     gene            28151..28603
                     /gene="nrdI"
                     /locus_tag="U1396_000029"
     CDS             28151..28603
                     /gene="nrdI"
                     /locus_tag="U1396_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HEM5341262.1"
                     /translation="MKKKIYLVYISLSGNTESFVKRLKSFFQFQTDWEIELVHVKDLV
                     KQDIPFYQLDAPFVAFLPTYLEGGNGVDNGDVEILTNPLGDFIALGTNTELCLGVVGS
                     GNRNFNNQYCLTAKQYAERFNFPVIDTFELRGMQNDIERIGRKIMELM"
     gene            complement(28756..30807)
                     /gene="pulA"
                     /locus_tag="U1396_000030"
     CDS             complement(28756..30807)
                     /gene="pulA"
                     /locus_tag="U1396_000030"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pullulanase"
                     /protein_id="HEM5341263.1"
                     /translation="MALRQFQAFLDDVATIRLVMEKRFDSEHMSFSLESNDATSQLFI
                     HSCLEVDNLVIYYLTSLHALTLDKDYTIYDQDRNKAELGYGHIVRSTLFEQSYTYNGQ
                     DLGATYRPEATTFKLWAPISKQVFLVLEGNPHAMTKGAKGVWEITVEGDLEAHSYHYL
                     HKVNGEWISVHDPYALSSTTNSGDSYVINPDKLHKIRRAKTQRPISQAIIYEMSVRDF
                     SWQKEAGFKHRSQFLGLTESPTMDGMKLGMDYIRELGVTHIQLLPVYDFGSVDENKPQ
                     AVYNWGYDPMQYNLPEGSYSSQPNDPYARIIELQEAIQAYHDADISVIMDVVYNHVYH
                     AEKYAFELIVPGYFYRYDDHGMRTDGTFCGNDVASERSMVRNYIKQSLRQWLELYGFD
                     GFRFDLMGILDSETINQIQTELSAIHPNVYLYGEGWKMATGLEFEKLAHQYNAEHLPE
                     ISFFNDDYRDTFKKLLLNPNRLVDKQLHEKVQHLLTGSRLSHFLTPQQSLNYIECHDN
                     ATAFDYFHIENPNWTPQQQKRAASFGLQLILISQGMAFIHSGQEFFRTKDEIDNTYNV
                     PDRINRLDWTRAIRYKEHIEFIQELITFRKNNPILSQDNYESIQETCDFYWLTEYVLR
                     YQVTSEEKTIQFIINFADSDFTYEREKDKAVLYNYPPVENRDQQEITIAGQSICILED
                     K"
     gene            complement(30831..31814)
                     /locus_tag="U1396_000031"
     CDS             complement(30831..31814)
                     /locus_tag="U1396_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5341264.1"
                     /translation="MRATIKDVAKLAGVSPSTVTRVIQNSSAISQKTKDLVRKAMADL
                     NYHPNLNARSLVSSYTQVIGLVLPDDSDVFYQNPFFPTALRGISQVAADHNYAIQIST
                     GKNEEQRLEAISQMVYGKRVDGLIFLYSKPDDPLVQLAIQHKFPFLILGKADSPFISL
                     VDNDNIQAGFEATNYFINKGYKNIAFVAGNKELVVSQDRYTGYKNALKSHNIPLDENK
                     VKFVSGFLLEDSAYKISKKLLKQDLDAIVTTDTSVAEGVVKYLNEVGVKLPIISFDSV
                     KPKLDIEAYVDVHAIKLGRVAFNTLHQIINDNKEDKQVCYRRVIPHTITEL"
     gene            complement(31824..32606)
                     /locus_tag="U1396_000032"
     CDS             complement(31824..32606)
                     /locus_tag="U1396_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341265.1"
                     /translation="MLPYPFSYFSSIFSPRNMFANRRLMNLWQRLFTTLFLVALLLIP
                     SSLQTVNLETYPLENFVEGIYAPLTDQVVDDLRQHAVIENNHLTYTGNTNWEQVTFGD
                     TVSSSSDFTYQFANQSLTIRKGSDILSELTYEGLNTDDFASKEALTAAISKKWYQANR
                     AAVGLSITLISTFILTTNLLFILLGASFFLFLTKKSRFFHFETFAECYNFALNCLGLP
                     TLIACLIGLFGQPVTTLLTIQNILFVLCLLWVFFKTKFRDEI"
     gene            complement(32666..33508)
                     /locus_tag="U1396_000033"
     CDS             complement(32666..33508)
                     /locus_tag="U1396_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5341266.1"
                     /translation="MKVSVKTRRILNQTLTYLYLIVLSVIIIYPLLITIMSAFKSGNV
                     VAFKLDSNINFTLDNFSKLFSETLYGTWYFNTLIIALLTMVIQTSIVVLAGYAYSRYN
                     FIARKQSLVFFLIIQMVPTMAALTAFFVMALMLNALNQSWFLIFLYVGGGIPMNAWLM
                     KGYFDTVPISLDESAKLDGAGHFRRFWQIVLPLVRPMIAVQALWAFMGPFGDYILSKF
                     LLREKEFYTVAVGLQTFISDVKNMKIAYFAAGAILIALPISILFFFLQKNFVSGLTSG
                     GDKG"
     gene            complement(33510..34805)
                     /locus_tag="U1396_000034"
     CDS             complement(33510..34805)
                     /locus_tag="U1396_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003027817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5341267.1"
                     /translation="MTMKQNPGKALLLSLIPGLGQIYNKQKAKGYIFLGVTLAFLVYF
                     IAIAAGELGNLITLGSVRGQDNSLFMLIRGSFHLIITVVYLAFYALNLKDARDTAKRW
                     NSGMPVATTLKEMVKGIYENGFPYLLIIPSYIAMTFAIIFPVVVTLFIAFTNYDFKHL
                     PPSALLDWIGITNFTNIWKLSTFRTAFGSVLGWTIIWALCASTAQIVIGILTAIIANQ
                     PFIKGKRIFGVIFLLPWAVPAFVTILTFSNMFNDSVGAINTQVLPFLSKFLPFIDNFL
                     IPWKTDPFWTKVALIMMQAWLGFPYIYVLTLGILQSIPNDLYEAAYIDGASAIQKFRN
                     ITLPMILAVAAPTLISQYTFNFNNFSIIYLFNNGGPGSVGGGAGSTDILISWIYKLTT
                     GTSPQYSMAAAVTLIISMIVISISMIAFKKLNAFEMEDV"
     gene            35230..36900
                     /locus_tag="U1396_000035"
     CDS             35230..36900
                     /locus_tag="U1396_000035"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEM5341268.1"
                     /translation="MKTDIEIAQSVTLKPITEIVEKVGISFDDIELYGKYKAKLSFDK
                     INAVKDNAPGKLILVTAINPTPAGEGKSTVTIGLADALSKIGKKTMIALREPSLGPVM
                     GIKGGAAGGGFAQVLPMEDINLHFTGDMHAITTANNALSALIDNHIHQGNAVGIDQRR
                     IIWKRVVDLNDRALRKVTVGLGGPLNGIPREDGFDITVASEIMAILCLATDINDLKER
                     LANIVIGYRFDRSPVYVRDLAVEGALTLILKDAIKPNLVQTIYGTPAFVHGGPFANIA
                     HGCNSVLATTTALRLADYTVTEAGFGADLGAEKFLDIKVPNLPKAPDAVVIVATHRAL
                     KMHGGVAKTELSAENVEAVKAGFSNLKRHVENIQKYGIPAVVAINEFVSDTADEIAAL
                     KELCAEIGVPVELASVWANGADGGVELAETVVATIENQAANYQRLYKAEDSLEEKVTK
                     IVTQIYGGSGVVFEKKARNQLTEFAKNGWDKLPVCMAKTQYSFSDDQFALGAPTDFDI
                     TVREFVPKLGAGFIVALTGDVMTMPGLPKAPAALNMDVAADGTAIGLF"
     gene            complement(36944..37753)
                     /locus_tag="U1396_000036"
     CDS             complement(36944..37753)
                     /locus_tag="U1396_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018381403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM5341269.1"
                     /translation="MKEKFQMCKTYLPVVLATIGFVNGCKIIFGELGKPNGMEAKYPL
                     FLLTISLVAIYILPLLVLTYSLAKRYNISKQVIGLSWLLGLTSSVSFSELGHTAIGYF
                     LLEIVKASNDFLNDWGAAISGPLAEEIGKGLTVLLVLLICRKMTLKNALVSGVIVGLG
                     FQIMEDITFVFRDMFMNKLDGFETILERVGQAGWAHWVFTLLFAIGLVALLTKNTGMS
                     KAQGVFWIGASFGIHFLFNSPFNTGIFQTVFPILSISLGLLAYQTVEKLSE"
     gene            37970..39281
                     /locus_tag="U1396_000037"
                     /pseudo
     CDS             37970..39281
                     /locus_tag="U1396_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015631733.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-containing oxidoreductase"
     gene            complement(39528..40379)
                     /locus_tag="U1396_000038"
     CDS             complement(39528..40379)
                     /locus_tag="U1396_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM5341270.1"
                     /translation="MKQFCAKHKMKLLIFLVVWSFFSGCKVLLTFFGKPDGMDGKYPL
                     FFLTISLVALYVFPMILIIRYIAKRFDISKKVIHLSWILGITASFYFSGLGQTLLGAF
                     WLFIVKPPQTFIQNWGAAVTAPFHEEFGKGLVVLLVLLLLKKLTLKNAVVSGMVVGLS
                     FQIIEDGLYVFQQIFKSKADGFATLIERMLHAGGTHWAFSLAFAVGLVALVSKNSGMS
                     KKQGLFWMLMAVLAHFFLNTPFNEGLTSNSGEITVLMLCFSFCVALAAFFKVDQIETN
                     QHTSNTY"
     gene            40537..41154
                     /locus_tag="U1396_000039"
     CDS             40537..41154
                     /locus_tag="U1396_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5052 family protein"
                     /protein_id="HEM5341271.1"
                     /translation="MKLQKKIMLSVVLGLSLVSLSACQSIANWWKNTKEEWIGLEMTV
                     RTYDENSQLIDEMSGRSLSISRNQEFDSVDAEGYSNADSSVLKVTLGNYEIDHVGSSL
                     IAAEEGLEDLYAKYQTTVDIANYDRAIPLVNRMVSSLKNDFTGKAKVVLIRSQNGTPL
                     ATYVGDKVSLYASDAPKTSELLIDGKRLIIYRCDYTIYDRELLEN"
     gene            41155..41664
                     /locus_tag="U1396_000040"
     CDS             41155..41664
                     /locus_tag="U1396_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM5341272.1"
                     /translation="MIDIRSARIEDAADLVAIYAPYVEKTAITFETEVPTVEAFASRI
                     EKTLEKFPYLVSVEEGKVVGYAYASTYYARAAYDWTVELSVYIKQEARGKGIGSLLYD
                     AIEEDLKARGFKNFLACIALPNPASLSLHKKRGYEQVAHFKNVGYKFDTWHDIVWLQK
                     SLVGKQNED"
     gene            41654..42307
                     /locus_tag="U1396_000041"
     CDS             41654..42307
                     /locus_tag="U1396_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM5341273.1"
                     /translation="MKINELEKRLLAVADASQAQPMKAYMKNHFDFLGVRTPDRRKVA
                     RQFFKESKAQGIDWEFVEACWSKPYREFQYIAIDYLVTKKKDLVLADLPRLKKLAQSK
                     SWWDSIDGLDKLVGKIVLDNPEAKQTILEWSLDDDFWLRRIAIDHQLLQKEKMDTELL
                     EKILVNNLNQIEFFINKAIGWSLRDYSKTNPDWVRAFLKKYSSQMAGLSIREASKYI"
     gene            42318..42605
                     /locus_tag="U1396_000042"
     CDS             42318..42605
                     /locus_tag="U1396_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1905 domain-containing protein"
                     /protein_id="HEM5341274.1"
                     /translation="MAKVYEFEAVIHPVPDKGGAYIIFPYDIREEFGKGRVKVHARFD
                     GHPYDGSIVNMGVKDEAGNICYIIGVQKATRLAIGKQAGDRVQVTIQERME"
     gene            complement(42902..43678)
                     /locus_tag="U1396_000043"
     CDS             complement(42902..43678)
                     /locus_tag="U1396_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019321467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HEM5341275.1"
                     /translation="MNTRKGIIFNIQHFSLHDGPGIRTTVFLKGCPLRCPWCANPESQ
                     KRKPEPMLDAVSKKMTIMGEEKSVDDIISEVMKDIDFYEESGGGLTLSGGEIFAQYEF
                     AKAILMEAKRHGLHTAIETTAFVEHHKFVDLIQYVDFIYTDLKHYNTISHRKVTGVNN
                     NLIIQNIQYAFSIGKEIVLRIPVIPDFNNSLEDAEQFACLFNQLKIDKVQLLPFHQFG
                     ENKYKLLNRTYAMTDVKALHPEDLKDYQAIFIKHNINCYF"
     gene            43810..44553
                     /locus_tag="U1396_000044"
     CDS             43810..44553
                     /locus_tag="U1396_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5341276.1"
                     /translation="MERLDKIIQLVSQHEKIDVNSLAEQLDVSKVTIRKDLDKLESKG
                     LLRREHGYAVLNSGDDLNIRMSFRYDVKKRIAKEAANLIADNETIMIESGSTCALLAE
                     EICKTKRNVTIITNSYFIANYVRQYDSCQIILLGGEFQKDSQVTVGPLLHKMIQFFHV
                     DKAFVGTDGYDSEHGFTGKNLMRSEVVQYMSDVAENMIVLTDSSKFTKRGTVRRFGLS
                     QVAQVITDTSLSEDLVKELENARVTVRLV"
     gene            44566..45540
                     /locus_tag="U1396_000045"
     CDS             44566..45540
                     /locus_tag="U1396_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM5341277.1"
                     /translation="MKQEKRRQLAKIAYLYYEEGKSQAEIAAETGIYRTTVSRMLTKA
                     KSEGIVKIEIQDFDRRLYRLEKYVQEKYGLKGLELVENSTDEDQLDLENRLAQAAADM
                     LTNLIDDGKKVGFSWGRSLSLIVDKIGNHRMKGVKFVPIAGGPSHIHARYHVNTLIYD
                     MANKFRGECSFINATIIQENQELAQGILSSKYFEELRADWKDLDVAAIGIGGRVDEKN
                     RQWLDMLTTADFQALSDEGAVGETCCRGLNQYGQAIVEDLQKRTIAISLDDLKEVPDT
                     IALAYGEEKAQAILAVLRAGYIHHLVTDERTIVKVLELDNDVHVHTNL"
     gene            45729..46052
                     /locus_tag="U1396_000046"
                     /pseudo
     CDS             45729..46052
                     /locus_tag="U1396_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935429.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
     gene            46085..46390
                     /locus_tag="U1396_000047"
     CDS             46085..46390
                     /locus_tag="U1396_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5341278.1"
                     /translation="MVKIALFCAAGFSTGMLVNNMKIAAADAGVEVEIDAHSQGKIAD
                     YLDEIDVALLGPQVAYTLDKSKALCDEKQVPIAVIPMADYGMLDGKKVLQLALSMVS"
     gene            46403..47704
                     /locus_tag="U1396_000048"
     CDS             46403..47704
                     /locus_tag="U1396_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5341279.1"
                     /translation="MSKIDTQKIIVPIMKFVNMKGIIALKDGMLAILPLTVVGSIFLI
                     LGQLPFEGLNAAIASIFGAEWTEPFMQVYSGTFAIMGLISCFAIGYSYAKNSGVEPLP
                     AGVLSLSSFFILLKSSYIPVDGEPIGDAIAKVWFGGQGIIGAIIIGLVVGAIYTTFIQ
                     RHIVIKMPEQVPQAIAKQFEAMIPAFVIFLLSMIVYIVSKMATNGGTFIEMIYDVIQV
                     PLQGLTGSLPGAIGIAFFISFLWWFGVHGQSVVNGVVTALLLSNLDANKALLAADKLS
                     LENGTHIVTQQFLDSFLIMSGSGITFGIVFAMLFAAKSKQYKALGKVAAFPALFNVNE
                     PVVFGFPIVMNPVMFLPFVLVPILAAFIVYGAISIGFMQPFSGVTLPWSTPAIISGFM
                     VGGWQGAVVQIIILAVSTIVYFPFFKIQDKIAYESETKEPV"
     gene            47856..50300
                     /locus_tag="U1396_000049"
     CDS             47856..50300
                     /locus_tag="U1396_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HEM5341280.1"
                     /translation="MKTVTEVAGTSIKTEYFGSLTDRMNKYREDVLDKKPYIDAERAV
                     LATKAYQEHREKPNVLKRAYMLKEILENMTLYIEEESLIAGNQASSNKDAPIFPEYTL
                     EFVLNELDLFEKRDGDVFYITEETKEQLRSIAPFWEKNNLRSRAGVLLPEEVQVYMET
                     GFFGMEGKMNSGDAHLAVNYQKVLEQGLRGFEERVRAAKANLDLTDPASIDKYHFYDS
                     IFIIIDAVKAYANRFVALATELAEKAPTAQRRQELLEIARICAKVPYEPAETFAEAVQ
                     SVWFIQCILQIESNGHSLSYGRFDQYMYPYVNADLEAGRETEDSIVERLTNLWIKTIT
                     INKVRSQSHTFSSAGSPLYQNVTIGGQTRDKKDAVNPLSYLVLKSVAQTHLPQPNLTV
                     RYHAGLDARFMNECIEVMKLGFGMPAFNNDEIIIPSFIEKGVLEEDAYDYSAIGCVET
                     AVPGKWGYRCTGMSYMNFPKVLLITMNDGIDPASGKRFAPAFSHFKDMKSFEELETAW
                     EKTLRHLTRMSVIVENAIDIALEREVPDILCSALTDDCIGRGKHLKEGGAIYDYISGL
                     QVGIANLSDSLAAIKKLVFEEGRLTPEELWHALETDYAGERGKEIQEMLIEDAPKYGN
                     DDDYADQLVTAAYDIYIDEIAKYPNTRFGRGPIGGIRYSGTSSISANVGQGRGTLATP
                     DGRNAGTPLAEGCSPSHNMDKNGPTSVLKSVAKLPTHEIVGGVLLNQKVNPQTLAKEE
                     DKQKLIALLRTFFNRLHGYHIQYNVVSRETLIDAQLHPEKHRDLIVRVAGYSAFFNVL
                     SRATQDDIIGRTEHTL"
     gene            50315..50983
                     /locus_tag="U1396_000050"
     CDS             50315..50983
                     /locus_tag="U1396_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEM5341281.1"
                     /translation="MEFMLDTLNIEEIRKWAEVLPLAGVTSNPTIAKKEGDIDFFERL
                     HLIRDIIGPNASLHVQVVAKDYEGILADAKKIRELAPENVYIKVPVTPAGLAAMKTLK
                     AQGYQITATAISTVFQGLLAIEAGADYLAPYYNRMVNLNIDSNAVIAQLSEAIDRECS
                     ESKILAASFKNVEQVNQAFANGAQAITAGADIFEAAFSMPSIEKAVNDFADDWSAIHG
                     RYTI"
     gene            51015..51971
                     /locus_tag="U1396_000051"
     CDS             51015..51971
                     /locus_tag="U1396_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM5341282.1"
                     /translation="MKQFSGLSRTIQGNHLLDTCAIDILKIGHRPLVLCAKQEYNTTV
                     ESFVKVLTCHGLIVKIVYMEEWDQNSVEECGEVGFRHRADHIIGIGNSSVAACTKAVA
                     DLLDLPAVLIPTSPFTTLPWVSVENKKRERPLFNESIQLIIADREQLLTQPTSELING
                     VVNTLLYLAAIKEVKRNHLFSLVDDILIRSFESVLLRGSLQAIEDFEARILSKEVQDV
                     LEVLSTCVTLDLPSDAWDVIQQIESKLSERREDLVDEPLKRNVVLYLLLSYLTQESEE
                     FQARLKWCQQLLLSANSSNLLSLEAVLKEIALEMGEDGSTRC"
     gene            52092..53186
                     /locus_tag="U1396_000052"
     CDS             52092..53186
                     /locus_tag="U1396_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol dehydrogenase"
                     /protein_id="HEM5341283.1"
                     /translation="MKVFASPSRYIQGKHVLFQGAEAIGKLGTKPLILCDDLVYGIVG
                     EKFLSYLVEEGMQVYRVAFNGEASDKEIQRVVEIGKEQASDVVIGLGGGKTIDSAKAI
                     ADLLGVPVVIAPTIASTDAPTSALSVIYSEEGAFERYIFYKKNPDLVLVDTAIICQAP
                     PRLLASGIADGLATWVEARAILQSNGTTMAGGGQTLAGIAIAQTCEQTLFEYGLQAMA
                     SCEAKVVTAALENIVEANTLLSGLGFESAGLAAAHAIHNGFTALEGDIHHLTHGEKVA
                     YGTLTQLFLENRPKEELEKYIRFYQALNLPTTLEELHLADAGYEDLLKVGQQATIEGE
                     TIHGMPFAISAEDVAEALMAVDYYVRSLDK"
     gene            53355..54431
                     /locus_tag="U1396_000053"
     CDS             53355..54431
                     /locus_tag="U1396_000053"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000542485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEM5341284.1"
                     /translation="MAYVVAVVGATGAVGAQMIKMLEESTLPIEKVRFLASARSAGKT
                     LQFKGQDIVIEETTETAFEGVDIALFSAGGSTSAKYAPYAVKAGAVVVDNTSYFRQNP
                     DVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGLERIIVSTYQAVSGA
                     GMGAILETQAQLRSVLNDGVEPKAVEANILPSGGDKKHYPIGFNAIPQIDLFTENDYT
                     YEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKGIAPIDEVKAAIASF
                     PGAVLEDDVANQIYPQAINAVGSRDTFVGRIRKDLDKENGIHMWVVSDNLLKGAAWNS
                     VQIAETLHERGLVRPTAELKFELK"
     gene            54504..55439
                     /gene="dapA"
                     /locus_tag="U1396_000054"
     CDS             54504..55439
                     /gene="dapA"
                     /locus_tag="U1396_000054"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEM5341285.1"
                     /translation="MSIQDLRDVKIITAMITPFKEDGSINFEVLPELIEHLLSHHTEG
                     ILLAGTTAESPTLTHEEELELFGAVQKIVNGRVPLIAGIGTNDTRDSIEFAKEVAAFG
                     GFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVEMTPETMLRLAE
                     HPNIIGVKECTSLANMAYLIEHKPEDFLIYTGEDGDAFHAMNLGADGVISVASHTNGD
                     EMYEMFTAIEQQDIRTAAAIQRKFIPKVNALFSYPSPAPVKAVLNYLGFEVGPLRLPL
                     VPCPEEDAKRIIKVVVDGDYEATKATVTGVVRPDY"
     gene            55697..55888
                     /locus_tag="U1396_000055"
                     /pseudo
     CDS             55697..55888
                     /locus_tag="U1396_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775050.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
BASE COUNT        16545 a        10070 c        12996 g        16395 t
ORIGIN      
        1 tccccttttt gtacactttc tagggaaatg taacgctgta taaagtttac actttttttc
       61 aaaaatccag taaaatcaac taaaaaggcg tgtaaagcaa ccaaatgcta aagccaagca
      121 taccttatca caaaatggta taatggaagg tacaatgttt gaaagaggaa gacgatgaaa
      181 ttacaagagg gagtagatct tcattttatt gatacagatc agtttacgac aaatcgtata
      241 cgtattcgct ttgcagctga aatgagtgag gctacagttg ctggtcgtgt gttagttgca
      301 aatatttttg aaatgggtaa ccaagaattt cagactgctc aggctgttcg gagaagattg
      361 gcagaattgt atggtgctca gttctcgacc tcagtttcga aacgtggtag ggtgcactgt
      421 gtagatgtga caatttcata tgtcagtcct cgtcacttac cagaaaatga ggatattaca
      481 gtggagattc ttgatttttt atacacatgt atatttagac cactgaaaaa ggggcgagga
      541 tttgatagcc agattttcga ggttgaaaaa acgaatttaa tcaattttct tcagtcagag
      601 atagaagata atttttatca tgcagatgtt gaaatgagta agctttttta taaagatccc
      661 tctcttcaaa ttccacgcgt cggtaggctt gatttggttg aaaaagaaac agcagaatca
      721 acttttcaga tttatcggaa tatgttgcgt atggataaaa ttgatatatt tgtcttaggg
      781 aaggttgaca gagaacaagt caaaagaaaa cttgaagatt ttggttttac ttatagaaat
      841 ccaaaattag agttagaata taatcaggaa tactcaaaca tcacgcaaga aaaaatcgag
      901 cgtaaacagg caaggcagtc cattttggaa ttggcatatc atttacaagt agtttacaac
      961 gatgtaaact atccggcttt gatggtattt aatggtctac tgggtgcttt ctcccattcg
     1021 aagttattta tgaatgttcg tgagaaagaa agtttggcct atacaattgg cagtcaggtt
     1081 tctatttttt caggaatgct gaaggtctat gctggaatta gccatgaaaa cagactcagg
     1141 gtaatgaagt taattagtaa acaactactt gatttaaaat gtggtaagtt tacagaagaa
     1201 gaattagagt tgacaaaaaa catgttgatt cattcagcaa ccttggctca agataggcag
     1261 aataatttga tagaacaagt atataatcaa gttaccttag gaaatagaaa tttaagttgg
     1321 ttagattgga ttgaggctat caaatcggta tcaatagagg atgtcattcg agtaggacag
     1381 atgattaatt tacaggctgt ttactttatg gagggaacag aagaatgaag ttagttgaga
     1441 agaagtatcc ttacatgaaa gaatctgtct tttatgggaa agttgacaat gggttgacag
     1501 ttattttgct tcctaaagta gatttccatg agacatatgg aattctaacg acaaattttg
     1561 ggggtattca tactcgattt acattggcta atggtaaaag tgttgtttat cctgcaggga
     1621 ttgcacattt tttagaacat aagctgtttg aaactgagaa tgaagaggat attatgaatg
     1681 agtttgctaa attgggagca agcgcaaatg cttataccag ttttagacag actagttact
     1741 tattttcaac gactcagaaa gtattggagt ctctatcact tttacaatct tttgttcgag
     1801 aaccgtattt tacagaagac aatgtagaaa gagaacaggg gattattgaa caagaaattg
     1861 agatgtatca agatgatgca gattatcgct tgtttacggg aattttatca tcgctttatc
     1921 cagaaagtcc tttggcctat gatatagcag ggacagttga atcaattgct gcaattactg
     1981 cggatgattt acatgagaat tttgaagtgt tttatcatcc aagtaacatg aatttattcg
     2041 ttattggtaa ttttgattta gaggcagttt ggaaacaaat ttcaagttat caagtggctc
     2101 agatggataa tccagctcag tcgtttgaat tggcaggtgt ccaaaagttg ccgatacagg
     2161 aacatctctc agaacaattt gaagtatcta ccccaaaatt ggctgttggt ttacggggaa
     2221 atgacgaggt tgataaggag actattcaga aatatcggct tagtttacaa tttttatttg
     2281 ccatgttgtt tggttggact tcaaaacgat atcaacagtt atacgagcag ggaaaaattg
     2341 attcttcttt ccagttccaa ttagaggtta cacctgaata ccactatttg attatctcgg
     2401 gcgatactca agaacccatt acgctttcta gtatactgat gaaagcactt aggaaattcg
     2461 aggatgatgc agatgtgaca gaggatcatt tacaattgtt gaaaaacgag atgtatggag
     2521 attttattcg aagcttaaat tctcttgagt ttacagctag tcactttgtt tctcagtatt
     2581 cagaatatga aaatgttttt gatatacctc aaatgataca aagtcttcag ttagatgaca
     2641 tcagagaggc aggtcgtcgc tttattgatc actgtgatat gacagatttc acgatttttc
     2701 caaaataagt gggcgcaacc cgtcgaaatt tctttggaat tttgttagaa tagtatactg
     2761 tacatgatga gcgatagaga gaggatatta tgagacaaaa gagtataggg gaagtactta
     2821 gaacagctag agaaggacgg agttggacat ttgttgactt gcaacggata acaaaaatcc
     2881 aagctaaata tttgcaggca cttgagtaca atgattttga ttttattgca aactcagatg
     2941 atgttcagtc tattttaaaa gcatatgctg aggctttgga attagatgca gatgttctac
     3001 tggatgctta cgagaccaat agtttagtga aatattatga agatggagaa gaagaactac
     3061 gctcttcaga attgaaaaga agctataagg ttcgtaaacg taaaaagaac tcttaccttc
     3121 cgttgattta cttattactt gcgacgggtt tgattattat ttttgtgact tatattgttc
     3181 atagcaggct ccaaaataga gcatctatta cgcctactac aacgtcatat agtatagttg
     3241 agcaatctgt atctgaagca agtagtggca cagagacgag ttctactgag caggcgcagt
     3301 caaattcaac gagttcaagt agttccgtta cagaaaatgt gactatttca ggatcaggtt
     3361 ctaacattgt tgcgaccctt aaaacagtga cttatccagt agaagtaact gtaacagcaa
     3421 aaaatacaac gagttggatc agcctttctg acaccttgtt agaggggggc gttacactaa
     3481 cacctgataa tccaacagta actactactg ttgaagaagg agtgacttct actacactta
     3541 ttcttggtgt tgtcaaagga gtagaggtaa ctgtaggtgg ccaaaagcta aatctatcag
     3601 ctctgacagc agatacaggc tcaattacaa taaattttga acaataaagg ttttatatga
     3661 aaaaagaaaa tattcccaat gcattgacga taggtaggat tttggtaatc ccaattttta
     3721 tcttgttact gaccgtttgg gattcaacaa ttagtcatgt cttagcagca cttatttttg
     3781 cattagctag tattacggat tatctagacg gctacttggc tcgtaaatgg caggttgtaa
     3841 caaactttgg aaaatttgcg gatccgatgg cagataagat tttggtgatg acagcattta
     3901 tcatgcttgt agagcttggc tttgctccag cttgggtagt tgcaattatt atttgtcgtg
     3961 aattggcagt gacaggtctt cgtctactct tggtggaaaa tggaggaaca gttctagctg
     4021 cggctatgcc aggaaaaatc aaaacatttt cacagatgtt tgcagttatt ttcctgctct
     4081 tacactggaa cgccgtgggg caaataacac tctatattgc acttttcttt accctatatt
     4141 caggttatga ttatttcaag ggtgcgtcct tcttgtttaa agatacattt aaatgatgaa
     4201 tattattgaa gtaaaaaatt taaaatataa atacaaccaa gaggatgagc gctatactct
     4261 aaatgatgtt tcgtttcacg tgaaacaggg agagtggctg tctattattg gtcataatgg
     4321 ttcgggtaaa tcaacaacag ttcgtttgat tgatggtttg ttggaagctg aatcaggtga
     4381 tatttatatt gacggtgatg ccttaaccat tgataatgta tgggataagc gacgcttgat
     4441 tggtatggtt tttcaaaatc cagataacca atttgtaggc gctacagttg aagatgatgt
     4501 tgcatttggt ttagagaatc agggaatccc tttggaggag atgcgtagtc gagttgacga
     4561 agctttggaa ttagttggaa tgactgattt caaaacacgt gagcctgctc gtttatctgg
     4621 tggtcagaag cagagggtgg cgattgctgg agtggttgcc ttgcgtccaa aaattattat
     4681 tttggatgag gctacgtcta tgttggatcc agaaggtcgt ctcgacttga ttaagattgt
     4741 ccgtgaaatt aaggagcgtc atggtatgac ggttatttct ataacacatg atttggatga
     4801 ggttgcattg agtgatcgag ttatcgtgat gaaaaatgga caggttgaat caattagcac
     4861 tccaaatgaa ctatttatgc gagaagattt ggtagattta gacttggata gaccgtttac
     4921 gacagaactg gcttcatctt tgcgccagac tggacttgat ttaccgctcc gctattttac
     4981 agaggaagaa ttagaggaaa ctttatggga attgttctcc aagaagtaag ctatacctat
     5041 caagctggca ctccttttga ggggcgtgcg ctttttggtg tggatttgga gattgttgat
     5101 ggctcttaca cggcccttat tgggcatacg ggttcgggca aatcaacgat tttacaactc
     5161 ttgaatggat taaatgtacc aacagaagga agagtagtca ttgatgatgt tgtgattaca
     5221 gcgacgtctg aaaataagga tattaagcaa gtcaggaaga aagtggggct ggtgttccaa
     5281 tttcctgaaa gtcaagtgtt tgatgaaacg gtcttaaaag acgttgcttt tggtccacaa
     5341 aatttcggag tttctcagga agaggctgaa acgattgcgc gtgaaaagtt ggccttggtt
     5401 ggaattgatg aaagcttgtt tgagcgtagt ccttttgaac tatctggtgg tcaaatgcgt
     5461 cgggtagcta ttgctgggat tctggcaatg gaaccaagta tcttagtttt ggatgaacca
     5521 acggctggat tggatcctgc gggtcgtcag gaattgatgg atattttcaa aaagcttcat
     5581 gaatcaggca tgacaatcgt tttggtaact catttgatgg acgatgtggc taactatgct
     5641 gattttgttt acattatgga aaagggaaag ctggtccgtt ctggtaaacc agtcgatatt
     5701 tttcaagagg tagatttttt agagagtatt cagttgggag tgcctaagat tactaagttt
     5761 gcagctaatt tggagagaag aggttttgta tttgaacgtc ttcctattac aattgaagaa
     5821 tttacgggga tggtgacaca tggataaatt aattttaggt cgctatattc ctggggattc
     5881 aattattcat cgtttggatc caagaagtaa gcttttagca atgtttggat ttctattgat
     5941 gattttttgg gccaataatt tggtcaccaa tgccttgttg atagcatttg ttttaggaat
     6001 ggttgtttta tctcgtattc gcttatcatt ttttattaat ggtttgaaac cgatgatagg
     6061 aattattcta tttacaactt tcttccaggt tttctttaca cctggagcga ccattctatg
     6121 ggaattttgg atttttaaat tatctgtaga agggttgcaa caggcggcga ttatttttgt
     6181 tcgctttgtt ttgattattt tcttctcaac cctattgacc ttgacgacga caccgctcag
     6241 tttggctgat ggtattgagt cggggcttgc acctttgaag aaatttaaag ttcctgtgca
     6301 tgaaattggt ttgatgttgt ccatgagctt gcgttttgta ccgaccttga tggatgatac
     6361 cactcggatt atgaatgctc agagagctcg tggagtggac tttaatgagg gaaatcttat
     6421 tcagaaggta aagtcagtta ttcctatttt gattccgtta ttcgcatcaa gttttaagag
     6481 ggcagatgct cttgcaacgg cgatggaggc gcgtgggtat caaggcggag atgggagaac
     6541 caagtaccgg attttggaat ggaagttagc agatacgtta gcaattttag ttatgttagc
     6601 tttagctgga ctcttattta tattgaaaaa ataagtaaaa aacgctagaa atagcgtttt
     6661 tattgtctaa tctcaatttg tctgtaatat ttgtaacaat ttcacaaagt ctaagtaata
     6721 gttagagggt atgatagaca catgacagaa aggaatgtga ctattatgaa cattacatta
     6781 aagaaaaact taaaaacaac tattgctggt ttggtagcgg gaatctccct tttaactgcg
     6841 ggtgtagtca gtgcagaaac ctatactgta aagtctggtg ataccctgtc tgaaattgct
     6901 gaaacataca atactactgt tgaaaaatta gcagagcaga ataagattac caacttagat
     6961 tttatccatg tcggtcaagt tatcgaattg ggagatgtga cagtgaaggc agtagagagt
     7021 tcaattgaac aaactcaatc aacatcaact tctactgcaa cagtaacaac tagcacctat
     7081 tcttcaaatt tgagtgctga agatgcagca gcaaaagaat ggattgcaat gaaggaatca
     7141 agcggtagct atgatgcccg taacggtatc tacattggtc gttaccagtt gacaaatact
     7201 tacttgaatg gtgactactc accagaaaac caagagcgtg tagcagatgc ttatgttgct
     7261 agtcgctatg gttcatggtc tgcagccaag gctttctggt tggcaaatgg ttggtactaa
     7321 gataaattag aagaggtcta gcacgatgct agactttttc tgtctcacga atgtatttcg
     7381 caactgcttt ttcgttcagt ccaacggtac tgaatagtaa cctctagccc aaaacttttg
     7441 atttccacgc tgtatggaca taggtgatgg aaaatatcaa ttaagtctag tctaattttt
     7501 tagtaaatgg attttctgcg gtacttagga gtgacataca tttggtatgt gataaactgt
     7561 aacggtttta accatgctaa gctagtccac tggactagtt tactcctcct ttatttaact
     7621 tgacaaatta gattataaca ggaaaaaaat agaagctcaa agccttgcca gccaccagta
     7681 taggtggtat ttttcttgtt tttctctatg agaaaactag cccgaagcca taataagaaa
     7741 aaggaccgtt agggtccttt ttggtttaca ttattgtcaa tcttccccaa aaatttcttg
     7801 agtaaggcga cgacccgtcg gtgtagctgc aaggccacct tcagcagttt cacggaaggc
     7861 agttgggagg gcggctccaa cttggtacat ggcattgata acttcatcca cagggatttt
     7921 tgattcaatt cctgccagtg ccatatcagc agccaccata gcgtagctag ctcccatggc
     7981 gtttcgtttg acacatggga cttctaccag accagcgacg ggatcgcaaa tcagacccag
     8041 catatttttt atgacaaagc agatggcttg gctggcttgg tagggagttc cacctgctgc
     8101 cagtgtcagg gctgcggcag acatagcaga ggcagatccg acttctgcct gacagcctcc
     8161 ttctgcacct gagatggagg cgttgttggc gataactagt ccaaaggctc cagctgtaaa
     8221 taggaagtca agttgctgtt cttctgtcaa attgagcttt tcaatagcaa ctcctagcac
     8281 agctggtaga cagcctgcag atcctgctgt cggagtggca cagactaagc ccattttggc
     8341 attcaattca ttaacggcca tggcatttct tgcggcggat aggacagcgg aatctgacag
     8401 ggttttacca gatttcatat aggcatctaa cttggcagca tcgcctcctg ttaaaccaga
     8461 tacagattta ctttcagtaa gtccatctac gatggaggct ttcataactg tcaagtttct
     8521 tgacataatt gtcaatattt cttcgcggct acgaccggtc aactcaattt cagtcgcgat
     8581 catgagttca gctacattag cagaaaagtt gtctgcttgc tgaactaatt cttcgatagt
     8641 ataaaacatg tctttctctt tctagttgaa gaaggttaca ttgtgcaggt gtggaatttt
     8701 ttcaatttct gcaatagaat tttcacattg gcgagcatcc acttcgataa tcataatggc
     8761 tttttcgcca gctttttcac gtgtcacgtt catttgggcg atattgatgt catacttaga
     8821 aaggacatcg gtcactttcg caatcatacc agggacatct tggtgaacaa taataatagt
     8881 tggcgtattc atattgagat tgacagagaa gccgttgagc tctgttactt gaatgtttcc
     8941 cccaccgatg gaaacgcctg tggctgagat ggatttttta tcgtttttta tgatgattct
     9001 ggtggtattg ggatgtgggg tattgctgtc cttgttgaca cgccagtaaa ccttaatgcc
     9061 tcgttctctt gcaatatcaa gagagtcagg aatgcgggga tcatccgtat ccatgcccag
     9121 aatacctgct accaaggcta catccgtacc gtgaccacga taggtcttgg caaaggaatt
     9181 gtagagttga aattccacct ctgtcggctc atcgccgaag atggaagata caattttccc
     9241 aattcggacc gccccagctg tgtgactaga agatggaccg atcataacag gtccaataat
     9301 atcaaagacc gactgaaatt ttaagtttgt catagtaatc ctcacgtttt tcttggtact
     9361 attatatcaa attttctagt tagagaatat gcctagatga atgtgttttc ttatgttaaa
     9421 attctatcgc ttaccctttt tgtatggtat aatacaagtt gttcaaaatc gtcaatcgtt
     9481 tttggataat caaattttgg aatacgacct tcaaatcgtt atttctacga aaagatggga
     9541 gaagattatg tcaattgaca attctaaaac ccgtgttgtt gtcggtatga gtggcggtgt
     9601 ggattcatcg gttacggctc tcttgctcaa agagcagggc tacgatgtga tcggcatctt
     9661 catgaaaaac tgggacgaca cggatgaaaa tggcttctgt acagcaacag aagattacaa
     9721 ggatgtggct gctgttgcag accagatcgg cattccttat tactctgtca actttgaaaa
     9781 agagtattgg gatcgcgtat ttgagtactt tttagcagag tatcgggcag gtcgcacacc
     9841 caatccagat gtcatgtgta acaaggaaat caagttcaag gctttcttgg attacgctat
     9901 gaacctgggt gcggactatg tggcgacagg gcactacgct caggtgtcac gcgacgagga
     9961 cggcaccgtt catatgctgc gtggggcaga taatggtaag gaccagacct acttcctcag
    10021 ccaactctca caggaacagc tgcagaaaac catgtttccg ctcggccatt tacaaaagcc
    10081 tcaggtgagg gaaatagcag agcgagcagg cttggcgaca gctaaaaaga aagactcgac
    10141 aggcatctgc tttatcggtg aaaagaactt caaagaattt ctagggcagt atttgccagc
    10201 ccagcccggt cggatgatga ccgttgatgg tcgtgatatg ggtgaacaca caggccttat
    10261 gtactatacc attggccagc ggggcgggct tggtatcgga ggacaaatcg gtggggacaa
    10321 tgagccttgg tttgttgtcg gaaaagacct gtcaaaaaat atcctctatg tcggtcaggg
    10381 cttctatcat gagtccttga tgtcaacttc tttacaggct agtcaagtcc actttacacg
    10441 tgatatgcct gaagaattca agctggaatg cacagctaag ttccgctacc gtcaaccaga
    10501 cagtcaagta actgtcaagg tgaaaggtga caaggcagaa gtcatttttg cagagccaca
    10561 acgagcaatc acaccaggac aagccgttgt tttctacgac ggacaagagt gtctgggcgg
    10621 tggtatgatt gatatggcct ataaagatgg agaggcttgt cagtatattt aatcaaaaat
    10681 aaaagcttag cacccttgtg ctgagctttt tatcttatcc ccagaaagca tcttcggcgg
    10741 tttggtcggc tgagaagagc caaacttcct tgattttgcc atcttccata cggaaaagat
    10801 cgatgccatt catgtttagt tcttcaccgt ctgttcgagt accgaggaat gttacgttag
    10861 cggcaacaag agtatcatta tcggataccc agtttgtcac tactttgaat gttccatttg
    10921 ttttttcggc gaaagttgct agatgtgctc cgagtacttc cttaccaatt ttagcaccag
    10981 atgttgaatg atttccgggt tgatgccaga taatgtcgtc tgccattgtt tcaaaaagag
    11041 ctgcaaaatc accagcgatg agagcattgt tataggcatt aaaaatttcc aagtttgttg
    11101 acatttgatg tcctccaatt tttttgatat agtacaatta tagtggaagt aatcaattat
    11161 acaagtaggt acttttgcat ttgttggtat caaaagtgat actattgtga taaataaagg
    11221 agaatttttt tgaaaaaagt tagtgaatat ggtatttgcc cttttgcaac aacacaaaag
    11281 gtcttgactg gtaagtgggg attggtgatt atctaccaac tcagtacagg aacgaaacgc
    11341 ttcaatgaat tacagcgact gattccaggt atcactcaaa ccatgttaac aaggcacctt
    11401 agacaattgg aggaggatcg cattattagt cgcacggtct atgcagaagt cccccctcgt
    11461 gtagagtata gcttgactga aatgggcgaa aaatttcgtt cggtgctgga tgctgttgag
    11521 gcttggggct tagaatatat tgaaacgtta acgtaacacc agatttgaaa ttctacaaat
    11581 cttttgctaa aataagagta acaatcatca tgatggtcaa agctcatggg aattgtaggc
    11641 ttttttgtcc tgcaattttc gagagttttg gctatttttt gctattgggg agagaagatg
    11701 gatttcagaa ccaaagttga caaccagatt ttcggtgtcc gtgccactgc attgcttata
    11761 aaagacggga aaatatttct cactaaagac tctaaggggc gttattatac cattggcggt
    11821 gcggttgagg tcaatgaggt agcagcagat gcggttgttc gagaagtcaa agaagaatta
    11881 gggattgaca gtcatgtcaa ccaactggct tttgttgtcg aaaataagtt tacacaggaa
    11941 ggcatacact ttcacaacat cgagtttcat tttatcgtgg agcctattgg agaaatacct
    12001 gaggagatga ttgaagataa cttgaaacaa gcttgtgaat ggatagacgt tgacaaactt
    12061 gtcaacctag atgtcgtacc agtttttctg gcagagaaat tgccaaactg gagtggacaa
    12121 gttacacaca ttatgaacat gaaggagaaa acaacatgac acacacattt gcagaaaatt
    12181 atgatgtcat cgtgattggt gcggggcatg cgggtgtaga agcaggattg gcagccagtc
    12241 ggatgggctg taagaccttg cttgcaacta ttaacttgga tatggtggcc tttatgcctt
    12301 gtaatccctc cattggtggc tctgccaagg ggattgtggt acgagaaatt gatgccttgg
    12361 gtggcgaaat gggtcgcaac attgacaaga cctatatcca gatgaaaatg cttaatatgg
    12421 gtaaagggcc agctgttcgt gccttgcggg ctcaggcaga taaggcagag tacgcagcag
    12481 agatgaagcg gacggtggag cgtcaggaaa atctgaccct gcgtcaaacc atgattgatg
    12541 agattttagt ggaagacggc aaggttatcg gtgtccgcac ggctaccaac cagaaatttt
    12601 cagccaaggc ggttgtggtg acgacgggta cagccttgcg tggtgagatt atcatcggtg
    12661 acctcaagta ttcatcagga cctaacaata gtctggcttc tatcacgctg gcggataatc
    12721 tgaaagaatt gggacttgaa atcggtcgtt tcaagacagg aacaccaccg cgtgtcaatg
    12781 ctcgtaccat taactacgaa gaaaccgaga ttcagccaga cgatgaaaag ccaaatcact
    12841 tttcattctt gtccaaggac gaggattatt tgcaggatca gattccttgc tggttgacct
    12901 atactaacgc gaccagccat gagattatca acagcaatct tcaccgagca cccatgtttt
    12961 cgggcattgt caaggggatt ggtccccgtt attgcccttc tattgaggac aagattgtcc
    13021 gttttgccga caaggaacgc caccagcttt tcctagagcc agaaggtcgc aatacagacg
    13081 aaatctatgt ccaagggctg tcaaccagtc tgccagaaga tgtgcagcag gacttgatcc
    13141 actccattaa aggtttggaa aatgcccaaa tgatgcggac aggctatgcc attgagtacg
    13201 atatggttat gcctcatcag ttgcgggcaa cgcttgaaac caagaagatt tcagggctct
    13261 ttacagcagg tcagaccaac ggaacatcag gttatgaaga agcagcaggt cagggaattg
    13321 tcgctggtat caatgcagcc ctcaaggtgc agggcaagcc tgagctgatt ttgaaacgaa
    13381 gcgacggtta tatcggcgtt atgattgatg acctggtaac caagggaacg gtggagcctt
    13441 accgcctctt gaccagtcgg gcagaatacc gcttgattct gcgtcatgac aatgctgata
    13501 tgcgactgac ggagattggt cgtcaggttg gcttggtaga tgatgaacgc tggcaggtct
    13561 tccaaatcca taaaaaccag tttgacaatg aaatgaagcg cttggagtct atcaaactca
    13621 aaccaatcaa ggaaaccaat gaaaaggttg ttgccatggg cttcaagcct ttgacagacg
    13681 ctctgactgc caaggaattc atgcgtcgtc cagatgtgac ttacgcagat gcggtagcct
    13741 ttatcggtcc tgcggcagag gatttggacg ccaagaccat tgaattgatt gaaacagagg
    13801 tcaagtacga gggctacatt gccaaggcct tggatcaggt ggagaagatg aaacgtatgg
    13861 aagaaaaacg cattccagcc gacattgact gggatgatat tgactccatt gcgaccgagg
    13921 ctcgccagaa attcaagctg atttcaccag aaaccattgg tcaggctagt cggatttccg
    13981 gtgtcaatcc agcggatata tccattctca tggtttactt ggaaggacgt agtcgttcca
    14041 tttctaaaaa caaatcaaag gacagtcact aaggctgttc ttttcgctgt atgtcagcta
    14101 tatgtcaact actttaaaat catgtgaaaa gtagcttttt tactgaattt atggtagaat
    14161 ggcaggcaga ggttagtgat gaaaagattt cgattttcga caattcactt tgtcatgata
    14221 ggtgtcattt tatttgggtt ggtggctctt gtccaccgat tttttccaat tggtgccagt
    14281 acagtttttg cgctactcat cagcctattg gtgttgattg cgctgtttat ttatcaaaaa
    14341 cattcttatg aatttagtga gctagaacag attgaatatc tcaataatca ggcaaattct
    14401 ggtttgatga tgctcttgga taaaatgcca gtgggagtta tcaaagttcg accagatagt
    14461 aatcaggtag aatggtttaa tccctttgct gagctgattt ttgctcaaga aaatggtgag
    14521 tttgatcaaa aaaaactacg tgaaattatt gacgttggtc tggatgagga gcgaatttat
    14581 gcaaactttt caggcaagag atacgctgtt aacgttgatt ttgatcaagg gttattttac
    14641 ttttttgatg cgtcgacaga gtattcagcg acaaatagtt tgatcggaag ccgtcctgtt
    14701 atagggatta tttcagttga taactatgat gagcttgagg atgctgtaac tgattctcaa
    14761 attagccaag tcaattcctt cttggctcaa tttgtttcgg aattttgcca tgattacggt
    14821 atctactacc gacgcggcac aatggatcga ttctatttct ttacagatta tgctgtgttg
    14881 gaaaaattga tagagaataa gttttcagtt attgataagt tccgcgagga ggctaaaaag
    14941 ttagatttag gtttgacttt gagtatggga ttggcgtatg gtaatgaaaa tcatcaccaa
    15001 atcggacagg ttgcgctcca aaatctcaat atggctgagg ttcgtggtgg agaccaggtt
    15061 gtggtcaagg aaaatgatga gagtaaacag ccacttttct ttggcggtgg ctcggcttct
    15121 tccgttaaac gaacacgtac gcggactcgt gctatgatga ctgctgtatc agataaactc
    15181 aaatcggttg atgctgtttt tgtggtggga catcgtaatt tagatatgga cgcgcttgga
    15241 tccgcggtcg gcatgcagta ctttgctcaa aatattatga acaatgccta tacggtgtat
    15301 aatccagatg aaatggcacc agatattgca cgtgccatca agaagttgag tgatgaaaat
    15361 tgttctaatt tgctaacggt tgaggaagcc atgaagatgg tcactttcca gtcgttgtta
    15421 atcatggtag atcattcaaa gattggcttg actttggata aggatttcta tgaccaattt
    15481 acccaggttg tggtggttga tcatcatcgt cgcgatacag atttcccaaa taatgcagtt
    15541 ttgacttata tagagagtgg tgctagttct gcgagtgagt tagtaacgga attaattcag
    15601 ttccagaatg acaaacacca taagcttaat cgcattcaat ctagtttatt gatggctggg
    15661 attatgcttg atacaaaaaa tttcacctct cgtgtgacta gtcgtacttt tgatgtggct
    15721 agttacttgc ggactcgtgg tagcgatagc ttggaaatcc agcagattgc tgcgacagat
    15781 tttgaggaat atcgtcaaat caatgaactg attttaagcg ggcagagaat tgaggccaat
    15841 gttgttattg cgtgtgcaga tgatactaaa gaatacgata atattattcc gagtaaggct
    15901 gccaatacaa tattggacat ggcaggaatt gaggcggtat tcgttgtaac aagaaatacc
    15961 aaagggtatg tatctatttc tgcaaggagt catagtaaaa tcaatgttca acgcatcatg
    16021 gaagaaatgg gtggaggtgg ccactttaac ctagctgccg ctcaggtata tgaccagaca
    16081 atcgcagaag tatgtgaaaa gttgacggat aaaatccgtg aagaaataaa tggaaattag
    16141 gagaacagat atgaaagtaa tctttttagc agatgttaaa ggtcaaggta aaaagggtga
    16201 gattaaggaa gttccaacag gttacgccca aaatttcttg atcaagaaaa atttggccaa
    16261 ggaagcaaca aaccaagcaa tcagcgccct tcgtggtcag gaaaaatcta aggaaaaggc
    16321 tcatgcagag atgattgcag aagcagaggc tatcaaggct aagttggctg aggaagctac
    16381 tttagtgaaa tttgtcgaaa aagttggtcc agatggccgt acctttggtt ctattaccag
    16441 caagaaaatt gctgaagaat tggacaagca atttggcatc aagattgata aacgccatat
    16501 tcagctggat cacccaattc gtgcgattgg tctcattgat gtaccagtta aaacctatca
    16561 agatgtaata ggcatcatta atttgagtat taaggaagct taattattta tctagccagt
    16621 gaggaggtga gatcttggca gagttggatg aattgcgggt gcaaccgcag gatattctag
    16681 ctgaacaatc ggtattagga gctattttcc ttgatgaagg caagctggtc ttcgttcgtg
    16741 aatacatcga agctgaagat tttttcaaac atgctcataa gctaattttt aaagctatga
    16801 ttgctctttc tgatagaaat gaggcaattg atgcgactac catgcgtaac tatttagtga
    16861 accatggtga tttggaaaat atcggtggtt tggcctattt ggctgaaatc attagttccg
    16921 tgccgacggc agccaatgcg gaattctatg ccaagattgt tgctgaaaag tctaatctcc
    16981 gtaaactgat tgcccgtttg acggatgcag ttaatcaggc ttatgagggt gcggatggtt
    17041 cagatgacat tattgccaat gctgaaaaag ctttgattga tgtcagtgag ggagccagtc
    17101 gaagtggttt caagcggatt gatgatgtct tgaatatcaa ctttgacaac cttgaaactc
    17161 gtgctaaaca gacgtcggat attacaggga ttgcaactgg ctatcctgct cttgatgcta
    17221 tgacaacggg tctgcatgag gaagagttga ttattcttgc ggctcgtcct gcggttggta
    17281 agacggcttt tgccctcaat attgctcaaa atatcggtac aaaactgggt ttgacagttg
    17341 ccatcttttc tttggagatg ggtgcagaaa gcttggttga ccgtatgctc gcttcagagg
    17401 gagttatcaa ttcgagggct attcgtacgg ggcatttgac gcaggaagaa tggaataagt
    17461 acatggtggc tcaagctaac ctggctcggg ctagtatcta tattgatgat acaccaggta
    17521 tcaagattac agagattcgt tcgcgttcac ggaagttggc tcaggaaacg ggcaatctgg
    17581 gtttgatctt gattgactat cttcaattaa ttacgggaac aggtcgggaa aaccgacaac
    17641 aagaggtttc tgagatttcc cgtcagttga agattttggc caaggaattg aaagttcctg
    17701 ttatcgccct cagtcagttg tcgcgtggtg tggaacagcg tcaggataag cgaccagttt
    17761 tgtctgatat tcgtgaatct ggatctatcg agcaggatgc ggatatcgtt gccttcctgt
    17821 atcgtgatga ttattatgag cgcggtgagc aggaagacgg tggtattccc aataatacgg
    17881 ttgaagttat catcgagaaa aaccgttccg gtgcgcgtgg taccgtggaa ctgatgttcc
    17941 aaaaagaata caataaattt gcaagtattt ccaagaggga ggatggatag agaatgagtg
    18001 atgcatttac agatgttgct aaaatgaagc aaatcaaaca agatattaaa gaccatgagg
    18061 gacagattgt cgagttgacc cttgaaaatg gtcgtaagcg tgagaagaat aagcaggggc
    18121 gtattgtaga ggtttatcag tctctcttta tcgttgaatt tgaagatcca aacaatacct
    18181 ttgtggaatc ttatacttac tcagacattt tgacagaaaa gattttgatt cattatttgg
    18241 attaatcgct atataaggct ttacagagcc ttttttttgt gctatactga tatttgtgtg
    18301 aaataacagc agggcaaaat gaagctcgtc aacagaaggt cagcaagaag agtaatcgtt
    18361 gctgtttcga tgaaggcctc ctgcacgaat caggtttgct taaaacgtta tttcctacaa
    18421 ataattttta tattttattt taggaggaca taactatgtc acgttataca ggaccatctt
    18481 ggaaacaagc tcgtcgtctt ggcttgtcat tgacaggtac aggtaaagaa ttagcacgtc
    18541 gtaactacgt accaggtcag cacggaccaa acaaccgttc taaattgtca gaatacggtt
    18601 tgcaattggc tgagaaacaa aaattgcgtt tctcttacgg tttgggtgaa aaacaattcc
    18661 gtaacttgtt cgtacaagct actaaaatca aacaaggtac tcttggtttc aacttcatgc
    18721 ttcttttgga gcgtcgtttg gacaacgttg tttaccgtct tggtttggca actactcgtc
    18781 gtcaagcacg tcaattcgta aaccacggtc atatccttgt tgacggcaaa cgcgttgaca
    18841 tcccttcata ccgcgttgaa gttggtcaag tgatctcagt tcgtgagaag tcaatcaaag
    18901 ttccagctat ccttgaagct gttgaagcaa ctcttggccg tccagctttc gtatcattcg
    18961 atgctgaaaa gcttgaaggt tcattgactc gcttgccaga acgcgacgaa atcaacccag
    19021 aaatcaacga agctcttgtc gtagaattct acaacaaaat gctctaagat ttgtatcgat
    19081 aatttaaaag ccctatttac aagggctttt tgtctgtatt tgaggagggg attatgtggc
    19141 gtaagtattt tttactagtg ctattagcta ttttggtcgt aggtggggcc ttctttctat
    19201 ctcaatcagc ggctacgcca aatgaatcag actatgtgaa ggctgtaaag agttaccagg
    19261 ctatttcgat agatgaagtg gagcaaaagg tccaagacga ggaagaattt atattataca
    19321 taggtcgtga gacatgccct tattgtcgtg attttgttcc gaaattaaca gaggcagtag
    19381 agcgatcacg tgcgactatc tactatttgg atagcgagtc ggatccgaat ggaaaaatac
    19441 aacaatttcg acagagtcaa ggtcttgcta cggttcctag cctaacctat tataaatcgg
    19501 gtaaattatc tggaatactt cgtaaaggga gtcaagcaac gctatctgaa atagagaatt
    19561 ttttagctct tcaagggcag taaatagttt taagaatgta tgaagcgaat atcatacatt
    19621 tttttgttca tgtttgtgaa aatatttcaa aacagattga aaaacatttc acaatcttgt
    19681 ataatactaa tatcagataa aaattggagg tttatatgaa aaagaaagct tggttaggct
    19741 tattaatgag tctacttgct gttttgtttt tagtggcgtg tggaggtaag tctgaaaaga
    19801 cagctacatc ttcatcatct acgacttctt cttcatcaga agaagctgtt tcaggtgcat
    19861 ctgagaaagt ttatacagat ccatctgagt tgaaagatag ctacgatgtt atcgttgttg
    19921 gttcaggtgg tgcaggtatg tcagcagcta tctcagctaa agacgctggt gctagtgttg
    19981 ctctcttgga gaaaatgcct gttattggtg gtaatacggc taaatcatca gctggtatga
    20041 atgcttcaca gactaaattc caagaagcgg aaggtattgc tgatacaaac gataaattct
    20101 acgaagaaac gcttaaaggt ggtaaaggga caaacgatcc tgaattgctt cgttatcttg
    20161 tagataactc tgctagtgca attgactggt tggatggaat ggggatcact cttagcaacc
    20221 taactacaac tggtggtatg agcgagaaac gtacccaccg tccagcagat ggttcagctg
    20281 ttggtggcta cttggtaaat ggtctttacc acaatcttgt tgaacgtaaa gtaccaattt
    20341 ttgtcaatgc agatgttaca aaactccaag acaaggatgg agcagtgaca ggtgttgaag
    20401 tgaagattgc tggtgaaacg aagcaaatct cagctaaagc agttgtattg gcgacaggtg
    20461 gtttcggtgc tgatttggaa atggttgcta aattaaaccc agcattgaaa ggttatgtaa
    20521 caaccaacca agaaggttca acaggtgacg gtattgcact tgctgaatca gaaggtgcag
    20581 caactgttga tatggaacaa atccaaattc acccaagtgt tgagcaagaa acttcttact
    20641 tgattacaga agcagttcgt ggcgaaggtg ctatccttgt caactcaaaa ggtgagcgtt
    20701 ttgttaacga attggaaact cgtgataaag tttcggcggc tatcaatagt ttggatccaa
    20761 actatgctta tgttatcttt gatgatgcct tgaaagatcg tgtgaaggct attgctcaat
    20821 acgaagaaaa aggtcttgta aaaacgggtg ctacacttgc agatttggct aaagaaattg
    20881 acctacctgc ggacacactt caaacaactc ttgatacttg gaacaaggct gtggcagata
    20941 agaatgatgc ggcatttggt cgtacatcag gtatggacca tgctttgaac actggttctt
    21001 accatgccat taaagttgca cctggtgtcc accatacaat gggtggtgtg aaaatcaata
    21061 ccaatactga agtattgaaa acagacggtt cagcaatttc tggtctttat gctgctggtg
    21121 aagtaactgg tggtgttcat ggtcaaaacc gtattggtgg taatgcagta gcagacatca
    21181 tcgtatttgg tcgtcaggct ggtgaacaag cagctggatt tgctaagaaa taaattgtag
    21241 acataagagg ctcggcagaa agaaggtcga gcttcttttt cttgtccctc tatctctaag
    21301 atgatatact tttaaggtat gaagaagaaa atagtattat tgttaggagc tattgcagtt
    21361 atagttttga cttggtctgc tattgctggt cagcgtcagc aatcttatgc cgaggctgaa
    21421 ttaagggacc aggataaaat ctggattatc actgatttgc attatttgtc acaggattta
    21481 tttgatgatg gagaggcatt ttcttatatc gaaaagacag ctgctggcaa ggatttacgt
    21541 tatggaaaag agcggatgga ggctctggtt gagcaggttg ggcgtgaaca tccttccttg
    21601 ttactagtca gtggagattt gactcttaat ggagaaaagc agagcatggt tgaattagct
    21661 cagtatttta cagagattga agaacaagga actgaggttt tggtcattcc tggcaaccat
    21721 gatattgcca gtggatgggc tagggccttt aagggagacc agcagatagt gacggatcag
    21781 gtcaccgctc agcaatttgc agagctattt gcccatcacg gttatcaaca agctagcagt
    21841 cgtgacaaag cctcattgag ctacctggcc aaaccatttt caaatgcttg gtttctgatg
    21901 atagacagca atatctactc tgacggctat ggaaaaggag ctcctccaac caatggacgt
    21961 atcaataaag agactctaga atggatagaa attcagcttc aagcagccaa ggaaactgga
    22021 gtgagcctga tacctgttgt ccatcacaat gtcttgcaac agcatgccat gctttcaaaa
    22081 ggctatactt tggataatgc tgctgatttg aagaccttgt tcaatcaata tggcattcaa
    22141 tttggttttt cagggcacac tcattctcag aatattgtta aggaagactt gggacaagtt
    22201 aactatactg aagtagtcaa tggagcattt tctatttatc cagctattat cggccaattg
    22261 agccttgatg atacaagcat tcattatcaa aaaactcaac ttgatatggc ttcgtgggca
    22321 gataagcacc aacctagtga tccaaatttg caggatcacg ttacctactt acaaactgtc
    22381 tttgacaata ccagtgacat catggtccac aatatgttaa acgatgaagg ttggtatgat
    22441 ggtgaaacag cagatgctat ttcacaattt atcatgccgg ccaaccgtgc ttatttttca
    22501 ggagaaaaac tagatcagac ttggctagat gagaaggtat ttccaagcca ggcttatcag
    22561 accttgcaag cagcatcacc gagaagtttc ttggctgatt atcttgatgt gattataaaa
    22621 cggagtcaaa atagggatgt agaaaaacta gtgcttaaaa cagaaaaaga ttttgtccaa
    22681 tagttttcca cagattgttg aaaaaaacca caacttatcc acaagctgtg aataagttat
    22741 accgtagtaa ctatccgagt aggtttgttt ttacaaacaa aaatactcag caactttcct
    22801 gaaaatgtga taaaatagta acaaattgtg tcaaatggag agaaagatga ccttactaag
    22861 cattgctatt ccgagttata attcggaggc ttaccttcat tactgcgttc attcccttgt
    22921 aatgggtggg gacaaggttg aaattctgat tattaacgat ggttcgtcag accgaactca
    22981 ggaaatcgca gaggagcttg ccaatcaatt ttcaaatgta cgggctattt atcaagaaaa
    23041 taaaggtcat ggcggagctg tcaatacagg gatacgtgag gccaagggga agtactttaa
    23101 agttgtagat tcagatgact gggtcgatac cagggcctat ttgaagatcc tagagagttt
    23161 gcaggctttg gaagatgaaa atacgccagt tgatgccttt atctccaact ttgtttacga
    23221 aaaagaggga caatctcgca aaaaatccat gtcttatcaa tccactctac ctgagaaccg
    23281 tatcttcggt tgggaagacg tgggggcatt ttccaagggg caatacatga tgatgcattc
    23341 cttgatttac aggacagatt tattgcgtga ggttggtctc gttctgccag agcatacttt
    23401 ttatgtggat aatattttcg tatttactcc tttgcaggct gtgaaaacga tgttctatct
    23461 gccagtagat ttttatcgtt actttattgg gcgaaacgac cagtctgtca atgagtccgt
    23521 catgattaag cgcattgacc agcagttaaa agtcaatcga atcttggtag ataatttaga
    23581 cttggaggcg attgacaatc ctgatttacg aagttatttg ctcaatcatg tggagattac
    23641 gaccattatc tcctgtgccc ttctcaatcg tgcaggaaca gctgagcata tgatgaaaaa
    23701 gcaggaatta tggcactata ttcgggataa caatccagct ctctttaaaa ttgttcgtaa
    23761 agggttactc gggcaattaa ccaaccttta cggttaccca ggtcgaaaaa tttttaatgc
    23821 cgtctataaa atcgcgaaaa gaatttatgg ttttaactaa aactcagttt cggctgagtt
    23881 tttctgttat aataaggaat atgaaaagcg tttacaaagg agaagataaa tgcaaagatt
    23941 aggacaaaca ggtctagaag tttcacgaat tggtctaggt tgtatgcgaa tggctagtct
    24001 gacagagcag gaaactgcta aagtgttaga tacagtcgtt ggacagggaa tcaacttttt
    24061 tgatcatgcg gatatttatg gtggtggtga atcagaaatc cgttttgctc agggggcaaa
    24121 attggcggga ttgaaacgtg aggacctgct tctccaatca aaatgtggca ttcgcaaggg
    24181 ttattttgat ttttctaaag actacatctt ggagtcagtg gacggtattc tcaagcgctt
    24241 ggatacggaa tatttagacg ttctcgcctt acaccgtccg gatgctctaa tggaagcaga
    24301 ggaagtggca gaagcctttt atctcttgaa aaaagcaggg aaggttcatc attttggcgt
    24361 cagcaaccaa aacatttacc aaatggagtt attacaatcc tatttcgatc agcccctagt
    24421 agttaatcaa ttgcagctct ctcctgctca cacgcctttg attgatgctg gattacatgt
    24481 caatatgaaa gatgatgctg cgactatgcg tgatggtgga ctgattgatt attgccagct
    24541 taaaaaaatc actattcagg cttggtctcc tttcttgatt gatttgcaac gaggtatttt
    24601 tgccaatcat ccaaactatg ctcttttaaa tcaaactatt ggagaaatag cagagcgata
    24661 caatgtttca catgaaacaa ttgtcgtggc ttggattttg cgtcatccag caaagattca
    24721 aaccattgtt gggtccatga atccggagcg cttaaaaaag attgcacaag ctagtcagat
    24781 tatcttgact agaccagaat ggtacgacat ttatagaagt gcgggcaata ttttgccgta
    24841 ggaggcaact atgcagtggg aaataaaagc atttgaccaa cttagtttac aagaacttta
    24901 cactatcttg acgcttcgga ccgatgtgtt tgtcgtggaa caagcctgtc cctatccaga
    24961 aatagatgga aaagatccaa gttgtcttca tcttttagga acagacaatg gggagttagt
    25021 ggcttatttg agaatcttgc cagctggtct aagttatgat gaagtttcca ttggtcgtgt
    25081 ggtcatcaag ccaagccatc gtggtaaagg attgggtcgg ccaatgatgg agcaagctat
    25141 cgcttacatt acaaccgagt ggaaggaaag tcagattaaa atcggggccc aagcctattt
    25201 ggaaaaattc tatcaatcgc ttggcttcga acctatttct gaagtatatt tggaggatga
    25261 tatcccacat ttggatatgt tataccgtaa actagtcgtt taaggctggt ttttcgattt
    25321 ttctcggcaa tttcccccaa aaatcagcca ttttatggta gaatgaatag gtataaaatc
    25381 agtaaaagag gaagaaaatg aaacgttcta tgtacgctgg acgtgttcgt aaggaacatg
    25441 tcggacagga aattactttg aaaggttggg tcggccgccg tcgtgacttg ggtggcctga
    25501 ttttcattga cttacgtgac cgcgaaggca ttatgcaatt ggtgattaac cctgagtcag
    25561 ttgaagctga agtgatggca aaagcggaga gtcttcgttc tgaatttgtt atcgaagtaa
    25621 caggaacggt tgtggagcgt gagcaagcta acgacaatat cccgacagga gctgttgaac
    25681 tgcaagtaac cagcttgaca gtgttgaaca cggctaagac aactccattt gaaatcaagg
    25741 atggcattga agccagcgat gacactcgtc ttcgttaccg ttatttggat cttcgccgtc
    25801 cagaaatgct caacaacttc aaattacgtg cggctgtaac ccacagcatt cgtaactacc
    25861 tagacgagct tgaatttatc gatgtggaaa cgccaatgtt gaccaagtca acgccagaag
    25921 gtgcgcgtga ctacttggta ccatctcgtg tgtccaaagg tcatttctat gctttgccac
    25981 aaagtccaca gattactaag cagcttttaa tgaacgctgg ttttgaccgt tactaccaaa
    26041 tcgttaagtg tttccgtgat gaagatttgc gtggtgaccg ccaacctgag tttacacagg
    26101 ttgacttgga aacctcattc ttgaatgagg ttgaaatcca agacatcgta gaaggcttga
    26161 ttgctaaggt cttgaaagat accaaaggaa tcgatgtgac cttgccattc cctcgtatgg
    26221 cctatgacca tgctatgaac ttctatggtt cagacaagcc ggatactcgt tttgagatgc
    26281 ttttgcaaga cttgacagaa cttgtcaaag aagttgactt caaggtcttc tcagaagcac
    26341 cagttgtcaa agccattgtg gtcaagggtg cggcggattg ctactcacgt aaagatattg
    26401 ataaattaac agactacgca aaacaatttg gtgctaaggg acttgcttgg gttaaagtag
    26461 acaagggaga attagcgggt ccagttgcta agttcttgac gggtattaca gaaaacttga
    26521 cagcaagttt acaacttgaa gacaaggact tggttctctt tgtagcagat gaattggaag
    26581 tagccaataa taccctggga gctttgcgta accgcttggc aaaagagcaa ggtttgattg
    26641 acgaaagtaa gttcaacttc ctctggattg tagactggcc aatgtttgag tggtctgaag
    26701 aggaaggtcg ctatatgagt gcccatcacc cattcacctt gccgacagaa gaaacagctc
    26761 atcatttgga tggtgatttg gcgcaggtgc gtgcagttgc ctacgatatc gttttgaatg
    26821 gttatgaatt gggtggcggt agccttcgta tcaaccaaaa agacatgcaa gaacggatgt
    26881 ttaaagcgct tggcttctct gctgaggatg cccatgagca gtttggtttc ttgcttgaag
    26941 ctatggacta cggcttccca ccacatggtg gattggctat cggtttggac cgctttgtca
    27001 tgttattggc tggtgaggat aacattcgtg aagtaattgc ctttccgaag aacaacaagg
    27061 catctgatcc gatgacacag gcaccgagca cagttgcatc agcacaatta gaggaattgg
    27121 ctttaaacat tacacttgaa aatgaataaa tttttcagaa aacagcgtgt acgcttttta
    27181 agaaaggcca gaaaaaataa gttttggtcg gtcattttgg gaatttctcg ggaaaaatat
    27241 gccgaacgga tatcggggtc cattatttat ggactcctat ctagtattgc agtcaatttt
    27301 ttctttagac cagggaatgt ttattcgtct ggagttactg gtcttgcaca gattgtttct
    27361 gctctggcag cttcttacgc tggttggaat gtaccgattg cggtggtcta ctacggcctg
    27421 aacattccct tgcttatctt agcttggtat aaaattggtt ataaatttac tatctttacc
    27481 tttattacgg tatccttcag ttctttcttt atccaattta tgccgccagt taccctgacg
    27541 acggatccgt tagtaaatgc tattttcggt ggtcttatgc tgggaactgg gattggcttt
    27601 gcacttagga acaatgtatc cagtggtggt actgatattg tctctatcat tattcgcaag
    27661 aagacgggac gtcaagttgg ctccatttcc ttgattgtca acattatgat tatgttgatt
    27721 gcagggatga cctttggctg gcaatatgcc ctgtattcaa tggttgcgct gtttatctcc
    27781 agtcgcatga cagatgcgat tttcgtgaaa caaaaacgga tgcaggccat gattattacc
    27841 aatcatcctg aacgtgtcat taagaaaatc cataagaagc tcaatcgcgg tgtgaccatt
    27901 atcaacggtg ctgagggtgc ttataaccat gagcaaaaga cgattctcat taccatcatc
    27961 actcgtgcgg agtttaatga tttcaagcat attatgaaaa aggcagaccc caaagccttt
    28021 gtatcggtag ctgacaacgt caatattatt ggtcggtttg tggaaagcga ctgattgaca
    28081 aacactacat gtaggagtaa aatagtattt acagtctaca tgtagtgttt ttattataaa
    28141 gaggaagtgt atgaagaaga aaatatattt ggtttacatc agtttgagtg gcaatacaga
    28201 gagttttgtg aaacgtctaa agtccttttt ccaatttcaa actgactggg agattgagct
    28261 agttcatgtt aaagatttgg tcaagcagga tattcctttc tatcagctag atgcaccctt
    28321 tgtcgccttt ttaccaacct acttagaagg tggaaatgga gtggacaatg gagatgtgga
    28381 aattctgacc aatcctctcg gagattttat cgctttgggg accaatacag agctctgttt
    28441 gggtgtcgtt ggctcaggca accgcaattt taacaaccaa tattgtctga ctgccaagca
    28501 atatgctgag cgatttaatt ttcctgttat agacaccttt gaactcagag ggatgcagaa
    28561 tgatattgaa cgcattggtc ggaagataat ggaattgatg taaagagcct caactcagct
    28621 ttatgctggg ttgttttttt ggtcacacaa aaaaactcac cagcgtgacc agtgagtttt
    28681 aaggagatta tgaaaaatat ttaggattga ctatagtata cctcagacta tatcgtgttt
    28741 catcggtcta aagtcctatt tgtcttctaa aatgcaaata ctctgtcctg caatcgtgat
    28801 ttcttgctga tcacgatttt cgactggagg atagttgtag agaactgcct tatctttttc
    28861 acgttcatag gtaaagtcgc tatccgcaaa gttgatgata aattgaatgg tcttttcttc
    28921 acttgtcact tgatagcgaa gaacatattc agttaaccag tagaaatcac aagtttcttg
    28981 gatactttcg tagttatcct ggctgagtat tggattattt ttgcggaagg taattaattc
    29041 ttgaatgaac tcgatatgtt ccttataacg aatagctcgt gtccagtcca gacggttgat
    29101 acggtcaggg acattgtaag tattatctat ttcatctttt gtacggaaaa attcctgtcc
    29161 gctgtgaatg aaggccatac cctgagagat taagatgagc tggagaccaa aacttgcagc
    29221 acgtttctgc tgttgaggtg tccagtttgg attctcaata tggaaatagt caaatgctgt
    29281 agcattatcg tgacattcga tgtagttgag ggactgttga ggcgttaaga aatggcttaa
    29341 tcggctacca gtcaggagat gttgtacctt ttcgtgcaat tgcttatcta ctagacggtt
    29401 tggattgagc aagagtttct taaaggtatc acggtaatcg tcattgaaga agctgatttc
    29461 aggtaaatgc tctgcattgt actggtgagc cagcttttca aattcgaggc ctgttgccat
    29521 tttccatcct tcaccataga ggtagacatt tgggtgaatg gcagataatt cagtttgaat
    29581 ctggttgatt gtttcgctat ctaaaatacc cataaggtcg aaacggaagc catcaaaacc
    29641 atagagttct agccattggc gaagggattg tttgatgtag ttgcggacca tactgcgctc
    29701 actggcaacg tcgttaccgc agaatgtccc gtctgttcgc atgccgtggt catcatagcg
    29761 atagaagtag cctggaacga tgagctcaaa tgcgtacttt tcagcatgat agacgtggtt
    29821 gtaaacaacg tccataataa ctgaaatatc tgcatcatgg taggcctgga tagcttcttg
    29881 tagctctata atacgtgcgt aaggatcgtt tggttggcta gaataggaac cttctggcag
    29941 attgtattgc ataggatcgt agccccagtt gtaaacagct tggggtttat tttcatccac
    30001 actgccaaaa tcataaacag gcaataattg aatatgggta acgcctagtt ctctgatgta
    30061 atccattcct agcttcattc catccatggt aggagactct gtcaatccga gaaattgact
    30121 gcgatgcttg aaaccagctt ctttttgcca tgagaaatca cggacgctca tttcatagat
    30181 aatggcctga gagataggtc gttgtgtctt agcacgacga attttatgaa gtttatctgg
    30241 attgataacg tagctgtcac ctgagttggt tgtggaagac agggcgtagg gatcgtgaac
    30301 ggaaatccat tcaccgttta ctttgtggag atagtgatag ctgtgcgctt ctaggtctcc
    30361 ttcaacagta atttcccaaa ctccttttgc tcccttcgtc attgcatgtg ggtttccttc
    30421 tagaacaaga aaaacttgct tagaaatagg tgcccataac ttaaaggttg ttgcctctgg
    30481 tcgataggtt gctcccaaat cttggccatt gtatgtataa ctttgttcaa aaagtgtaga
    30541 gcgaacgata tgaccatagc cgagttcagc tttattacgg tcctggtcgt agatggtata
    30601 gtccttgtcc aatgtcaatg catggaggct ggttagataa tagataacga gattgtctac
    30661 ttctagacag gaatggataa aaagttgaga cgtagcatca tttgattcga gtgagaagct
    30721 catatgttcg gagtcgaatc gtttttccat gaccaagcga atagttgcta catcatcaag
    30781 gaatgcttgg aattgtcgta atgccatgag ccaaaaggct cctttctaag ttagagttcg
    30841 gtgatggtat gtggaatgac acgtcggtag cagacttgct tgtcttcctt gttgtcattg
    30901 atgatttggt gcagagtgtt gaatgcgacg cgtcctagtt taatagcgtg gacgtcaacg
    30961 taggcttcaa tatctagttt tggcttgacg gagtcaaaag aaatgatagg aagtttgact
    31021 ccgacttcgt tgagatattt gacaacacct tcggcaacgg aagtgtcggt tgtgacgatt
    31081 gcatccaggt cttgtttgag taatttctta gaaattttgt aggcactgtc ttcgagaagg
    31141 aagccagaca caaacttgac cttgttttca tccaggggaa tattgtgcga tttaagggcg
    31201 ttcttgtaac cagtataacg gtcttgagat acgaccaact ctttgttacc agcgacgaag
    31261 gcaatgtttt tgtaaccttt attgatgaag tagttggtag cttcaaagcc ggcctggata
    31321 ttatcattat caactagtga tatgaatgga gaatccgcct taccaagaat gaggaagggg
    31381 aatttgtgtt ggatagctaa ttgtaccaat ggatcgtcgg gcttggaata gaggaagatg
    31441 aggccgtcca ctcgtttgcc gtagaccatc tgagaaatcg cttctagacg ttgttcttca
    31501 ttctttcctg tggagatttg gatggcataa ttatgatctg ccgcaacttg agaaattcct
    31561 cgtaatgcag tagggaagaa ggggttttga tagaaaacat ccgagtcatc tggcaaaact
    31621 agtccgataa cctgtgtata gctagaaact aggcttcgag cgttgaggtt tggatggtag
    31681 ttgagatccg ccatggcttt cctaaccaag tctttcgttt tttggctaat ggcagagcta
    31741 ttttgaatga cacgagtaac tgtagatggc gagacaccag ctaattttgc cacatctttg
    31801 atggtagcac gcatatagac ctcctagatt tcatctctga attttgtttt gaaaaatacc
    31861 cataacaagc atagtacaaa taggatattt tgtatggtta gaagggtagt cacaggttga
    31921 ccaaatagtc caattagaca ggctataaga gtaggcaggc ccagacagtt gagagcaaaa
    31981 ttatagcact ctgcaaacgt ttcaaaatgg aagaaacgag actttttagt caaaaagagg
    32041 aagaagctgg ctcctagtag gatgaagagt aggtttgttg ttaaaataaa ggtcgaaata
    32101 agagtgatgg acagtccgac agctgctcgg ttggcttgat accatttttt agagatggct
    32161 gcagttaatg cttccttact agcaaaatcg tcagtattca aaccttcata agtcaattcg
    32221 cttagaatat cacttccttt acgaatagtc agagactgat tggcgaattg ataagtaaag
    32281 tcagaactag agctaacggt atcaccaaat gtcacttgct cccagttagt atttccagta
    32341 taggttaggt ggttgttttc gatgactgca tgttgacgga ggtcatctac gacctgatct
    32401 gtcagaggtg catagatacc ttctacgaaa ttttctaaag gataggtttc gagattgaca
    32461 gtctgtaggg agctcggaat gagcaagagc gccactaaaa aaagcgttgt aaacaaccgc
    32521 tgccaaaggt tcattagtct acgattggca aacatatttc ttggagagaa gatactagaa
    32581 aaataggaaa aaggatatgg gagcattcgt tggacctttc ataaatatca atgtttcccc
    32641 taaaaaggga aaaggtggga cagggttatc ccttgtctcc accgcttgtt aaaccagata
    32701 caaagttctt ttgtaggaag aagaatagga tactgatagg gagggcaata agaatggcac
    32761 ctgccgcaaa gtaggcaatc ttcatatttt tcacatcact gatgaaggtt tgaagtccga
    32821 cagctacagt atagaattct ttttcacgaa gcaagaattt ggataggatg taatctccaa
    32881 aaggtcccat gaaggcccag agcgcttgta cagcaatcat tggacgaacg agtgggagga
    32941 cgatttgcca gaaacgtctg aagtgaccgg caccgtctag ttttgcagat tcatcaagtg
    33001 agattggcac cgtatcgaag tagcctttca tgagccaagc gttcattggg ataccaccac
    33061 cgacataaag gaagatgagg aaccagcttt ggttgagcgc attgagcatg agggccataa
    33121 cgaagaaggc ggtaagagca gccatggttg gtaccatttg gataatcaag aagaagacca
    33181 aactctgctt acgagcgatg aagttatagc gactataagc gtaacccgct agtaccacta
    33241 tacttgtttg aataaccatt gtcaagagag caatgataag cgtattgaag taccaggttc
    33301 cgtatagagt ctcgctaaag agcttgctaa aattgtctag tgtaaagttg atattgctat
    33361 ccaatttgaa ggcaaccacg ttaccagact tgaaggcgga catgattgta atcaagagag
    33421 gatagatgat gataacagac agaacaatca gatagagata ggttaaggtc tgattgagta
    33481 tgcgtctagt ctttacagat actttcatct tatacatcct ccatttcaaa agcatttagt
    33541 tttttgaagg caatcatgga aatactgatg acaatcattg agataatcaa tgtaactgct
    33601 gccgccattg agtattgagg tgatgtacct gtggttaatt tataaatcca tgaaatcaag
    33661 atgtcagttg aacccgctcc accaccgacg ctaccaggac caccattgtt gaagaggtag
    33721 atgatagaga agttgttgaa gttgaaggtg tattgactga ttagtgttgg agctgctact
    33781 gctaaaatca tcggaagggt gatgttacgg aatttttgaa tggcacttgc accatcaatg
    33841 taagcagctt catacaagtc gtttggaatg gattgcaaaa tacccaaggt caaaacatag
    33901 atataaggga aaccaagcca agcctgcatc ataatgaggg caactttagt ccagaatggg
    33961 tcggtcttcc aagggataag gaaattatcg atgaatggta ggaatttgct caggaatggc
    34021 aatacctgtg tgttaatagc gccgacacta tcgttgaaca tgttactaaa agtcaagata
    34081 gttacgaagg ccggaacagc ccatgggagc aagaagataa caccgaagat acgttttcct
    34141 ttgatgaatg gttgatttgc gatgatggct gtcaagatac cgataacaat ttgagctgtt
    34201 gaagcgcaga gtgcccagat aattgtccag ccaagtacag aaccaaatgc tgtacggaat
    34261 gtgcttagtt tccagatatt tgtaaagttg gtaataccaa tccaatccaa caatgcgctt
    34321 ggtggcaggt gtttgaagtc gtagtttgta aaggcgataa acaatgtaac gacaactggg
    34381 aagatgatag caaaggtcat cgcaatatat gatgggataa tcaagagata tgggaaacca
    34441 ttctcataga taccttttac catttctttt aatgtggtag ccactggcat ccctgaattc
    34501 catcgtttcg cggtatcacg tgcgtctttt aggttgagtg catagaaagc gagatagaca
    34561 actgtgataa ttaagtggaa agaaccacga atcagcatga atagcgaatt atcttgtcca
    34621 cgaacactac cgagggtaat caagttgcct aattcaccag ctgcaatagc aataaaataa
    34681 acaaggaagg caagcgtaac acctaaaaag atgtatcctt tggctttttg tttattgtag
    34741 atttgtccga gaccagggat cagggacaaa aggagtgcct tacctggatt ttgtttcata
    34801 gtcatagtct ccttatatag cttctgaata gacggtggat gttatcgtca tttagttttt
    34861 cttttattac ttcgttaact cgccttgcct aacttcagtt atgcctgcgg ctcattgcct
    34921 cgtactaaaa gtaaactaaa agactatata agtgaagtgc tttatgcaag cggtcgtttg
    34981 cttgctcatc aaggcaattt ttaaaagaat actgactctc ttttgaaaaa actaactaaa
    35041 cccagtctta gatggaagtg tagagctatg atgagaatgc aggttttaaa aatttgtatc
    35101 tgtttaagta aagaaacctg tagtttttct gaaaattccg tacgttagtg cataaatagt
    35161 aaaaaatatg cgaaaataag ctgtggtatg gtataatgtc cataaaaaat aaggaaatta
    35221 ggagctctca tgaaaacaga tattgaaatt gcacaaagtg taaccttgaa accaatcaca
    35281 gaaatcgttg aaaaagttgg tatcagcttt gacgatattg aactctatgg aaaatacaag
    35341 gcaaaattgt cctttgataa aatcaatgcg gtgaaagaca atgcgccagg gaaattgatc
    35401 ttggtgacag ctatcaaccc aacgcctgct ggtgaaggta agtcaacagt aaccattggt
    35461 ctggcggatg ctttgtctaa aattggaaag aaaactatga ttgccctccg tgagccttct
    35521 ttggggcctg ttatgggaat caagggcgga gctgctggtg gtggttttgc acaagtcttg
    35581 cccatggaag atatcaacct gcattttaca ggcgatatgc atgccattac cacagctaac
    35641 aacgctcttt cagccttgat tgacaaccat atccatcaag gaaatgctgt aggcattgac
    35701 caacgcagga tcatctggaa acgggtcgtg gaccttaatg accgtgcttt gcgtaaagta
    35761 actgttggat tgggtggtcc gctcaatggt attccgcgtg aagatggatt cgatattacc
    35821 gtagcttctg aaatcatggc gattttatgc ttggcgacag acatcaatga cttgaaagaa
    35881 cgtttggcaa atattgttat cggttatcgt ttcgatcgca gtcctgtcta cgtgcgtgat
    35941 ttggcggtgg aaggtgcttt gactcttatt ttgaaggacg ctattaaacc aaaccttgtc
    36001 caaaccatct atggcacgcc agcctttgtc cacggaggtc catttgctaa tattgctcat
    36061 ggctgtaact cagttcttgc aactacaaca gctctgcgtt tggccgacta taccgtaaca
    36121 gaagcaggtt ttggtgcaga ccttggagca gagaaattcc tagatatcaa ggtgccgaac
    36181 ttgcctaagg ctccggatgc agtagtcatt gttgctaccc accgtgcgct taaaatgcac
    36241 ggtggtgtag ccaagacaga actttctgct gaaaatgtag aggcagtgaa agctggtttt
    36301 tctaacttga agcgtcacgt tgaaaatatt cagaaatacg gtattccagc agtcgttgct
    36361 atcaatgaat ttgtatctga cacagctgac gaaattgccg cgttgaagga actttgcgct
    36421 gaaattggcg tacctgtcga gttggcaagt gtttgggcaa atggcgctga tggtggtgtt
    36481 gaattggctg agacagttgt tgctactatt gaaaatcaag cagcaaacta ccaacgtctt
    36541 tacaaggctg aggatagctt ggaagagaaa gtgaccaaga ttgttacgca gatttatggt
    36601 ggctcaggtg tggttttcga gaagaaagct cgtaaccagc tgactgaatt tgctaagaat
    36661 ggttgggaca agttgccagt ctgcatggcc aagacccagt acagcttctc agatgatcag
    36721 tttgcccttg gagcgccgac agactttgac attacagtcc gtgaatttgt gccaaaattg
    36781 ggtgcaggct ttatcgttgc cttgactgga gatgtcatga ccatgcctgg tttgccaaaa
    36841 gctcccgcag ctctcaacat ggatgtggca gcagacggga cagctatcgg cttgttctaa
    36901 caagaatgaa tataaaaaat ccgctcaaag gcggattttt tgtctattca gatagtttct
    36961 caaccgtttg ataggcaagt aagccaaggg aaatactcaa gataggaaac accgtctgga
    37021 agataccagt gttgaatggt gaattaaaga gaaaatggat tccaaagctt gcaccgatcc
    37081 aaaatactcc ctgtgctttt gacatacctg tatttttcgt gagaagggct actaagccaa
    37141 tggcaaagag aagcgtgaaa acccaatggg cccaaccagc ttgaccaacg cgttcaagaa
    37201 tggtttcaaa gccgtctaat ttattcatga acatgtctct aaaaacaaag gtgatgtctt
    37261 ccatgatttg gaaacctaat ccaacaatca ctccgcttac caatgcattt tttagtgtca
    37321 tttttctaca aataagcagt acaagtagaa cagttagccc tttaccgatt tcttctgcca
    37381 atggacctga aatagctgca ccccagtcat ttaggaaatc attactagct ttaacaattt
    37441 cgagcaggaa atatccgata gctgtatgtc ccagttcaga aaaagagacg ctacttgtta
    37501 agcctaaaag ccagctaaga cctataactt gtttggagat gttatagcgt ttagctaagg
    37561 aatatgtcag tactagtagg gggaggatgt aaatagcgac caaggaaatg gttaggagaa
    37621 agagaggata tttagcttcc atgccatttg gcttacctaa ttctccaaag ataattttgc
    37681 aaccgttgac aaatccaatc gttgctaaga cgactggaag ataggtttta cacatttgaa
    37741 atttttcttt catagtttga cctttctgta ttaataaact ggtgtatgga tacattgtat
    37801 caaaaatgag tacattttgt ctataattcg cctatttttt atctaaacct tatcggttat
    37861 tgtaatgttt tttcctgcaa ctaggactcc ataatagagc cgtaacggaa ttgtgtctca
    37921 aattttcttt tttgctagac taaggtttaa aaaataaaag gagtatgtta tggaacaata
    37981 tgatttattg gtcattggtt ttggatgtaa agaccttagc aggtaagctg ccagtagctg
    38041 ggaaaaaggt tgccttggtt gaggaaaata ctgctatgtt tggcgggact tgtatcaata
    38101 ttggctgtat tccaaccaag accctcttgg tagcagcaga taaaaactga acttttgagc
    38161 aggtaatgga tcaaaaagaa acagtcacca ctcgtctgcg aaacaaaaac gaggcagtct
    38221 tgaaaggcag tggtgctagt ttgtatcaag gacacgcacg ttttgttgca gacaaggttg
    38281 tggaagtatc ggctggtgag gaatccattc aactaactgc ggaaaccatc gtcatcaata
    38341 caggtgctaa gtcgcgcgtg cttccaattc caggcttgtt ggatacagct cacgtttatg
    38401 acagcacagg cattcagaac ttggaaactc gtcctaacac gttggcaatt atcggtggag
    38461 gcaacattgg attggaattt gctgggcttt acagcaaact cggcagccag gtgacggtat
    38521 atgaagtcag ctctgctatt ttaccgagag aagaggaagt ggttgctaag ttagccaagg
    38581 agtatatgga agaagctggc gtgacctttg tcttgggtgc gaaactcgag caagtagcag
    38641 ctgcgggcga gcaagttgct gtgacggtta atggcgaaac ggcaatcttc gacgccgtcc
    38701 tctatgcgac aggtcgggtg ccgaacactg ctgacttggg cttggaaaat acggcgattg
    38761 agcttttgga aaatggtgct gttaaggtgg atgactactg cgaaacgact gttccaggtg
    38821 tctatgcggt gggagatgtc aatggcggac cacaattcac ttacacatcc ctagacgact
    38881 tccgtatcgt tttcggcaag ttgactggga ctggaactta tagcttgagc caacgtaagt
    38941 ctattccaac cagcgtcttt attacgcctg tgctgtctcg tgtcggtctg accgagaagg
    39001 aagccaagga agcaggttac gactacattg ccaacgaatt gcctgtcgcc aatatgccac
    39061 gtgcccatgt caataatgac ctcaaaggca ttttcaaggt tatcgtggat aaggaaagta
    39121 agcttgttct gggggcgact ctctttggtc gcaattcaga ggagctgatt aacttgattg
    39181 ctatggcgat tgacaataag attccttata gctacttcaa aacacagatt ttcactcacc
    39241 cgactatggc tgagaatttg aatgacgtct ttaattttta atactctagg gagataagct
    39301 tcttgtatta gttgtggctg cgtttcctag actagtgtca agatcatcga gcgaccttat
    39361 ttcattgact gactatgacc gtccgtaatg ggcggttttt tataattatc tgcgatttct
    39421 tggaccgatg gaatgggata aagactgata atagatattg atgaatcaac aaccatttcg
    39481 aatacttggt ttgtaacata acaaaagcct gtcaatgcag gcttgtttca gtatgtgtta
    39541 ctggtgtgct gattcgtttc aatttggtct actttgaaaa atgcagcaag tgccacgcag
    39601 aaactaaagc agagcatgag aacggttatt tcaccagagt tagatgttag tccttcgttg
    39661 aatggagtat tcaagaaaaa gtgtgctaag acagccatca gcatccagaa aagtccttgt
    39721 tttttcgaca tgccactatt ttttgagacg agagcgacca aaccgactgc gaatgcaagg
    39781 gagaaggccc agtgagttcc accagcatga agcatacgtt cgataagagt ggcgaagcca
    39841 tctgctttag atttaaagat ttgttggaag acatagagac cgtcttcaat aatttggaaa
    39901 ctcaaaccta caaccatacc gctgactacg gcatttttta gagtaagttt ttttagcaat
    39961 aggagtacga gtagtacaac taggccctta ccaaactctt catggaaggg agcggtgaca
    40021 gctgctcccc agttttggat aaatgtttga ggtggtttga cgatgaataa ccaaaatgct
    40081 cctaaaagcg tttgaccaag accagagaag tagaaactag ctgttatacc caaaatccaa
    40141 ctgagatgga taactttttt agaaatatca aaacgtttcg ctatataacg aatgataaga
    40201 atcataggga agacataaag tgcaactaag gaaatagtta gaaagaagag aggatacttt
    40261 ccgtccattc catctggttt cccaaaaaag gtaagaagaa ctttacagcc agagaaaaaa
    40321 ctccaaacga ctagaaaaat aagtagcttc attttgtgtt tagcacagaa ttgtttcata
    40381 aaaatgactt cctttatatt aatttagtag atgtcagtta tccctaccgt gctatagttt
    40441 atcattgcca tctttttatt atctcaggtc tatctatttt ttctcggttt ttgtattccg
    40501 tgatataata agtaaaatat gttggaggac tattatatga aattgcaaaa gaaaatcatg
    40561 ttatctgttg ttcttggttt gagccttgtt agtttgtctg cttgtcagtc cattgcgaat
    40621 tggtggaaaa ataccaagga agaatggatt ggtttggaga tgacggtaag gacatacgat
    40681 gaaaattctc aattgataga tgaaatgtct ggtagatccc tttcgatttc gcggaatcag
    40741 gaatttgact cggtggatgc cgaaggctat tccaatgcgg attcgtctgt cttgaaggtg
    40801 acacttggga attacgaaat tgaccacgta ggctcatctt tgattgcagc agaagaaggt
    40861 ttggaagact tgtatgcgaa atatcagacc acagtagata ttgcaaatta cgatcgtgca
    40921 attccgcttg ttaatcgtat ggtatctagt ctcaaaaatg attttacagg taaggcaaag
    40981 gtggttttga ttcgttcgca aaacggaacc ccgcttgcta catatgtagg tgataaagtg
    41041 tctctttatg catctgatgc acctaagact tctgaactct taattgatgg caagcggttg
    41101 attatctacc gttgtgatta tacaatttat gatagagaat tattggagaa ctaaatgata
    41161 gacattcgtt ccgcaaggat agaggatgcg gcagaccttg tggcaattta tgctccttat
    41221 gtagaaaaga ccgctattac ctttgaaaca gaagtaccga ctgtcgaagc ctttgcaagt
    41281 cgaattgaaa agaccttgga gaagtttcct tatctggtct cagtagaaga aggtaaagtt
    41341 gtgggttatg cctacgcttc aacctactat gcccgtgcgg cttacgattg gacggtggaa
    41401 ttatccgtat atatcaagca agaagcacgt ggaaaaggaa tcggaagtct tttatatgat
    41461 gccatagagg aagatttgaa agcgcgtggc tttaagaact ttttagcctg tattgctctt
    41521 cctaatccag cctcgctttc tcttcataag aagagagggt atgaacaggt agcacatttc
    41581 aaaaatgttg gttataaatt tgatacctgg catgatattg tctggcttca aaaatctctt
    41641 gtaggtaagc aaaatgaaga ttaacgaatt agaaaaacgt ttgttggctg tggcggatgc
    41701 cagtcaagct caacccatga aagcctatat gaagaatcac tttgactttc taggtgtgcg
    41761 aactcctgac cgccgaaaag ttgctaggca atttttcaaa gaatctaagg ctcagggaat
    41821 tgactgggaa tttgtagagg cttgctggtc taagccctac cgtgagtttc aatatatcgc
    41881 cattgattat ctggttacca agaaaaaaga cttggttcta gctgatttac cccgtttgaa
    41941 aaaactggct caaagtaagt cttggtggga tagtatcgac ggcttggata aattagtcgg
    42001 taagattgtt ttggacaatc cagaggccaa gcagacaatc ttggaatgga gtttggatga
    42061 tgatttctgg ttgaggcgga ttgccattga ccaccagctt ctccaaaaag aaaagatgga
    42121 tacggaactt cttgagaaga ttttggtcaa caatctcaat cagattgaat ttttcattaa
    42181 caaggcgatt ggctggagtt tgcgagatta ttccaagacc aatcctgact gggtacgggc
    42241 ttttctaaaa aagtacagtt cccaaatggc aggcttatcc attcgtgaag ctagtaaata
    42301 tatctaggag ggctgttatg gcaaaggtat atgaatttga agcggtcatt catccagtac
    42361 cggataaggg cggagcctat atcatctttc cctatgatat acgagaagag tttggcaagg
    42421 ggagggtaaa ggtacatgcc agatttgatg gtcatcccta tgatggctcc attgtcaata
    42481 tgggagttaa ggatgaagca ggcaatatct gttatattat tggcgttcaa aaggctactc
    42541 gactggctat tggaaaacag gctggtgata gagtacaagt aaccattcaa gaacgaatgg
    42601 agtaatcagg cttgcaaatc cttgagatta tggtagaata gattcatgcg atgagccgag
    42661 tagtgacttt gtcactttcg acgctaggga ggtcttcatt taattgaaac gcaggagcgg
    42721 accttgaata gttgtgtgaa ccttctattc tcatcggaaa cgatgccctg gcccaccttt
    42781 atggtgggcc ttttttatat actaagtatg cttcagatac tctatcagaa gcatatttca
    42841 gtatgtgatt tctataggaa tgctattggc tcagccgagg aagtttttgt atttctcaaa
    42901 gttagaaata acagttgata ttatgtttga tgaagattgc ttgatagtct tttaaatctt
    42961 ctggatggag agccttgaca tcggtcatag cataggttcg attgagaagc ttatacttat
    43021 tttctccaaa ttgatggaag gggagtagtt gaactttgtc aatcttgagt tgattaaaga
    43081 gacaggcaaa ttgttcagca tcttcgaggg aattattaaa gtcagggata acagggatac
    43141 gtaggacgat ttctttcccg atggaaaagg cgtattggat attttgtatg ataaggttat
    43201 tgttgacgcc ggtgactttt ctatgagaaa ttgtattgta atgttttaaa tcagtataga
    43261 taaagtcaac gtattggata aggtcaacaa atttgtggtg ttctacgaaa gcggtggttt
    43321 caatagcggt atgaaggccg tgtctttttg cctccataag aatagctttc gcaaactcat
    43381 attgggcaaa aatttctccg ccagacagcg tgagcccacc accagattct tcataaaaat
    43441 caatgtcttt catgacttcg gatatgatgt catcaacaga tttttcttct cccatgatgg
    43501 tcattttttt actaacagca tcaagcatgg gttcaggttt tcgtttttga gattctggat
    43561 ttgcacacca aggacaacgt agggggcaac ctttcaagaa aaccgtcgta cgtataccag
    43621 gaccgtcatg gagcgaaaaa tgttgaatgt taaaaataat gccttttcgt gtattcatgc
    43681 tctttctcct tttcgattaa tttgatttta tcacacaaaa gaaagtttta caattacgaa
    43741 cgtaagttga aaggttgcaa atagttgaaa aagagtcaaa atttgataga ataatgatga
    43801 ggtgatgaaa tggaacgatt agataaaatt atacaactgg tatcacaaca tgaaaaaata
    43861 gatgtcaata gtttggcgga gcaactggac gtttctaagg taaccatccg taaagattta
    43921 gataagttag aatcaaaagg tttattacgt agagaacacg gctatgctgt tctaaatagt
    43981 ggcgatgacc ttaatattcg gatgtccttt cgctatgacg taaaaaaacg aattgcaaaa
    44041 gaagcagcaa atcttatcgc cgacaatgaa acgattatga tagagtctgg gtcaacttgt
    44101 gctctcttgg cagaagaaat ttgcaaaacc aagagaaatg tgaccatcat aacaaattct
    44161 tattttatag ccaattatgt gcgacaatat gatagctgtc agattatttt attgggtggt
    44221 gagtttcaaa aagattccca agtaacagtt gggccgctct tgcataaaat gattcagttt
    44281 ttccatgttg ataaggcttt tgtaggaact gacggctatg atagtgagca tggttttaca
    44341 ggtaaaaact taatgcgaag cgaagtagta cagtacatgt ctgacgttgc tgaaaacatg
    44401 attgtgttaa cagattctag taaatttaca aaacgaggga cagtacgcag atttggttta
    44461 agtcaagttg ctcaggtcat tacagatacg tcgctttctg aagatcttgt caaggaatta
    44521 gaaaatgcta gagtcacagt aaggctagtt taggttggag gcagtatgaa gcaagaaaaa
    44581 agaaggcagt tggcaaaaat agcctatctt tactacgaag aggggaaaag ccaagctgag
    44641 attgctgctg agacaggaat ttatagaacg acagtcagta gaatgttgac caaggctaag
    44701 tcagaaggca ttgtaaaaat agaaattcaa gattttgata ggcgcctata tcgattagaa
    44761 aaatatgttc aagaaaaata tggattaaaa ggtttagaac tggttgaaaa cagcaccgat
    44821 gaggaccagc ttgatttaga aaatcgtctg gcacaggctg cagccgatat gcttaccaat
    44881 ctcattgatg atggaaagaa agttggtttt tcatggggga gaagcctcag tcttattgta
    44941 gataagatag ggaatcatcg tatgaaaggt gtcaaatttg ttccaatagc tggcggtcca
    45001 agtcatatcc acgcacgtta tcatgtgaat actctgattt acgatatggc caataaattt
    45061 cgtggagaat gtagttttat caatgcgacg attatccagg agaatcaaga acttgctcaa
    45121 ggtattcttt cttctaaata tttcgaggag ctacgtgctg actggaagga cttagatgta
    45181 gcagcaatag gtattggcgg tcgagtcgat gaaaaaaatc gtcaatggtt agatatgttg
    45241 acgacggctg actttcaagc cttatcagat gaaggtgcag tcggtgaaac ctgttgtcgt
    45301 ggtctgaatc aatacggtca agctatcgtt gaggatttgc aaaagaggac cattgccatc
    45361 tctttagatg atttaaaaga agttccagat accatagctc ttgcatatgg ggaggaaaag
    45421 gctcaagcca ttttagctgt attgcgagct ggctacattc atcatctggt aacagatgaa
    45481 cgaaccatcg taaaagtttt agaactggat aatgatgtgc atgtccatac aaatttgtaa
    45541 gagagtactt caatcgctta aaggtggttg aagtattttt ttatccccaa aaatgcacaa
    45601 aagtgcagaa ataaattaaa acagaaaatg ttctataaat atatttacgc tataaagaga
    45661 aaatgatatg atttacttac gaaagaaata taataactta caaataaaac acatcggagg
    45721 aaaaagaaat ggaaatgatt gttgcagatc aattgatcat gggattgatt atttatgctg
    45781 gagatgcgaa aagtcacgcc taccaagctt tgtcgcttgt caaagcaggt gaagaagagc
    45841 gagcagaaga ggaattagaa ttggcagatg cagcattatt agaagctcac aatatgcaga
    45901 caaaattctt agcataagaa gctgggggaa caaaatctga tattacagca ctatttgtcc
    45961 attcgcaaga tcatttgatg acatctatta cagagatcaa tttgattaaa gaaatcattg
    46021 atttgcggaa agaactaaaa aaagttggct aaaacaaaaa aattatattt aggaggaaac
    46081 cgaaatggtt aaaatcgctc tattttgtgc cgctggtttt tctacaggca tgttggtaaa
    46141 caacatgaag atcgcagcag cagacgcagg tgtcgaagta gaaatcgacg cgcattccca
    46201 agggaaaatt gcagattacc ttgacgaaat cgatgtagct ttactgggac cacaagtagc
    46261 atatacgctt gataagtcaa aagcgctctg tgatgaaaag caagtcccta ttgccgtgat
    46321 tccaatggca gactacggga tgttggacgg gaaaaaagtt cttcaattgg cactcagcat
    46381 ggtttcataa aggagtatgg tcatgtccaa aattgataca caaaaaatta ttgtcccaat
    46441 catgaaattt gtgaatatga aagggatcat cgctctaaaa gatggtatgt tggctatctt
    46501 acctttaaca gtagttggta gtattttctt aattttgggg cagttgcctt ttgaaggctt
    46561 aaatgctgca atagcttcta tatttggagc ggaatggact gaaccgttta tgcaagtcta
    46621 tagcggaacc tttgcgatta tgggcttgat ttcttgtttt gcgattggtt attcttacgc
    46681 aaaaaatagt ggagttgagc ctctccctgc gggcgtactg tccttgtctt cattctttat
    46741 cctcttgaaa tcatcttata ttccagttga tggagaacca atcggtgatg ccatcgcaaa
    46801 agtatggttt ggtggtcaag gaattatcgg tgcgattatt attggtttgg tagtgggcgc
    46861 tatctatacg acttttattc agcgtcatat tgttatcaag atgcctgaac aagtaccgca
    46921 agctattgcc aagcagtttg aagctatgat tccagctttt gtcatctttt tgctatctat
    46981 gattgtctat attgtttcca agatggcgac aaacggtggt acattcattg aaatgattta
    47041 cgatgtgatt caagtgccac tacaaggttt gacaggttca ttaccaggtg cgattggaat
    47101 tgctttcttc atttccttcc tctggtggtt tggtgtacat ggccagtcag ttgtcaatgg
    47161 tgtcgttact gctttactat tgtcaaacct cgatgccaat aaggcccttt tagcagcaga
    47221 taaattgtct ctggaaaatg gcacccacat cgtgacccaa caattcttag atagtttctt
    47281 gattatgtca ggttcaggta ttaccttcgg tattgttttt gcaatgctat ttgccgctaa
    47341 atcaaaacaa tataaggctc ttggtaaggt agcggccttt cctgcactct ttaacgtaaa
    47401 tgaaccagtc gtctttggtt ttccaattgt gatgaatcct gtaatgttct taccatttgt
    47461 tttggtaccg atcttagcgg ctttcattgt ctacggtgca atctcaatag gctttatgca
    47521 accattttca ggtgtgaccc taccatggtc tactccagca atcatttctg gttttatggt
    47581 gggtggttgg caaggtgcag ttgttcaaat cattatttta gctgtctcaa ctattgttta
    47641 tttcccattc ttcaaaatcc aagataagat tgcctatgaa agtgaaacga aagaaccagt
    47701 ttagtcaatg atgtcagaca aaagagttgc acaaatgtgc agccggcttc ggaaatctta
    47761 gcgctcacta gcatcaattg acaataaccc ctattacagg atatacttaa tttacaaacg
    47821 aaacaaaatt aagtttcgaa agaaagggta aaactatgaa aacagtgact gaagtagctg
    47881 gcactagcat taaaactgag tattttggaa gtctgacaga tcggatgaac aaatacagag
    47941 aagatgtcct tgataagaag ccctatattg acgcggaacg ggctgtttta gcaacaaaag
    48001 cctatcaaga acatagagag aagcccaatg tattaaaaag ggcctatatg ctcaaggaaa
    48061 tattggagaa catgacgctt tatattgaag aagaaagtct gattgcaggt aaccaagctt
    48121 cttcaaataa agatgctccc atcttcccag aatatacctt ggagtttgta ttgaatgaat
    48181 tggatttatt cgaaaaacgg gatggggacg tcttctatat taccgaggaa accaaggagc
    48241 agttgcgcag catcgctcca ttctgggaaa aaaataatct tcgttcacgt gcaggtgtct
    48301 tgcttccaga agaagttcaa gtttatatgg aaactggctt ctttggtatg gaaggtaaga
    48361 tgaactctgg cgatgcccac ttggctgtca attaccaaaa ggtattggaa caaggtttgc
    48421 gtggttttga ggagcgagtt cgtgcagcaa aggctaatct cgatttgacg gatcctgcaa
    48481 gtattgataa atatcatttc tatgactcaa tctttatcat cattgatgcg gtgaaagcat
    48541 acgcaaatcg ttttgtcgcc ttggctactg aattggcaga gaaagcacca acagctcaac
    48601 gccgtcaaga actactggag attgcacgga tttgtgcgaa ggtgccgtat gaacctgctg
    48661 aaacatttgc agaggcagtg caatctgtct ggtttatcca gtgtatcttg caaatcgagt
    48721 cgaatggaca ttctctatcc tatggacgtt tcgaccaata catgtatccg tatgtgaatg
    48781 ctgatttaga agcaggacgt gaaacggaag acagcatcgt cgaacgcttg actaacttgt
    48841 ggattaagac cattactatc aacaaggttc gtagtcaatc acataccttc tcatctgctg
    48901 gtagtccact ataccaaaat gtaacaattg gtggacaaac acgtgataag aaggatgctg
    48961 tcaatccact ttcttactta gtattgaaat ctgttgccca aacacacctg ccacagccaa
    49021 acttgactgt tcgctatcat gcaggcctag atgctcgttt catgaatgaa tgtattgaag
    49081 tcatgaaact tggttttggt atgcctgcct ttaacaacga tgaaattatc attccatcct
    49141 ttattgagaa aggtgtcttg gaagaagatg cctatgacta cagtgcgatt ggctgtgtag
    49201 aaacggctgt tcctggtaaa tggggatacc gttgtacagg tatgagctat atgaacttcc
    49261 cgaaagtttt attgattacc atgaatgatg gtatcgatcc tgcatcaggc aaacggtttg
    49321 caccagcctt tagtcacttc aaagatatga aatcctttga ggagcttgaa acggcatggg
    49381 aaaagacgct tcgccattta acacggatga gtgtcatcgt tgaaaatgca attgacattg
    49441 ctttagaaag agaagtacca gacattctct gctcagctct gacagatgac tgtatcggtc
    49501 gtggtaagca cttgaaagaa ggtggagcga tttacgatta catttctggt ctgcaggttg
    49561 gcattgccaa tttatctgat tctctagcag caatcaaaaa attagtcttt gaagaaggac
    49621 gattaacacc agaagaatta tggcatgctt tggaaacaga ctatgctggt gagcgtggta
    49681 aggaaatcca agaaatgttg attgaggacg caccaaaata tggtaacgat gatgattatg
    49741 cagaccaatt ggtaacagca gcgtatgata tttatatcga tgagattgcc aaatatccaa
    49801 acactcgctt tggtcgtggt ccgattggtg gtatccgtta ttcaggtaca tcatccattt
    49861 cagccaacgt tggacagggg cgtggtacct tggcaactcc agatggtcga aatgcaggta
    49921 caccgttggc agaaggttgt tctccatcac ataatatgga taaaaatgga ccgacatccg
    49981 ttttgaaatc agttgccaaa ttaccaacac atgaaattgt tggaggcgtt ctgctcaatc
    50041 agaaggtcaa tccacaaaca cttgccaaag aagaagacaa acaaaaatta attgccctct
    50101 tgcggacatt ctttaaccgc ttgcatggct atcatattca gtacaatgtt gtctctcgag
    50161 aaaccttgat tgatgcacaa ctacatcctg aaaaacaccg tgatttgatt gtccgtgtag
    50221 caggttattc agcattcttc aatgtattgt cgagagcaac acaagacgac atcattggtc
    50281 gtacagaaca tacattgtaa aagaggttat tattatggaa tttatgctgg acaccttaaa
    50341 tatagaggaa atacgaaaat gggctgaggt tctacccctt gcgggggtga cctcaaaccc
    50401 aacgattgcg aagaaagaag gtgacattga cttttttgaa cgtttgcacc ttatccgtga
    50461 catcatcggt ccaaatgctt cactacatgt gcaagttgtg gcaaaggatt atgaagggat
    50521 tttggcagac gctaaaaaaa ttcgtgaatt ggcaccggaa aatgtctata ttaaggttcc
    50581 ggtaacgcct gctggtttgg ctgctatgaa aacattgaaa gcgcaaggtt atcagattac
    50641 agcaacagcg atttctaccg tttttcaggg cttgttagct attgaagcgg gtgcagatta
    50701 cttagcgccg tactacaatc gcatggtcaa tctgaatatt gattcgaacg cggtcatcgc
    50761 tcagttatca gaagcgattg atagggagtg ttcggaaagt aaaattttag cggcgtcatt
    50821 caaaaatgtg gagcaagtaa accaagcatt tgcaaatggg gcgcaggcta ttacggcagg
    50881 tgcagatata tttgaagcag ccttttctat gccatccatt gaaaaggcgg taaatgattt
    50941 tgcagatgat tggtctgcca ttcatggaag gtatactatc taaacatctc tatattataa
    51001 aataaggggg cactatgaaa caattctcag gtctttcacg cactatccaa ggaaatcatc
    51061 ttttagacac ttgtgcgatt gacattttga aaataggtca tcgccccctt gttttatgtg
    51121 caaaacagga gtataatacg actgtagaaa gttttgtgaa agttttaact tgtcatggac
    51181 ttattgttaa aatagtctat atggaggagt gggaccagaa ctcggttgaa gaatgtgggg
    51241 aagttggttt ccgacatcgt gcagaccata ttattggcat tggtaatagt tctgtagcag
    51301 cttgtacaaa ggctgttgca gatttactag acttgccagc tgttcttata ccgacttcac
    51361 cgtttaccac tctaccttgg gtatcagtgg aaaataagaa aagagagcga ccattgttta
    51421 atgagtccat ccagctaatt atagcggata gggagcaatt attgacacaa cctacctcgg
    51481 agttgataaa tggagtggtc aatactcttc tttatctagc agccataaaa gaagtaaaaa
    51541 gaaatcatct attcagcttg gtagatgata ttcttatcag aagttttgaa agcgttttat
    51601 taagaggtag ccttcaagct atagaggatt ttgaagctcg gatattatca aaagaagtac
    51661 aagatgtctt agaagttctt tctacttgtg taacattaga cctgcctagt gatgcttggg
    51721 acgtgattca acaaatagaa tcaaagctca gcgaaagaag agaggatttg gtggatgagc
    51781 cattgaaacg aaatgttgtc ctctacttgc ttctgtccta tttgacacag gaatcagaag
    51841 aatttcaagc caggctgaag tggtgtcaac agttgctttt gtctgccaac tctagcaatc
    51901 tattgtcgct ggaggcagtt ttaaaggaaa ttgcactaga gatgggagaa gatggctcga
    51961 cacgttgcta gtaggcatcg ctgtacaata gcaatattta aaatgcaggc tcatacctct
    52021 tactttcggc aatgctaact gtcgtttatt gctcaatata acaatatcta ttatttcaag
    52081 gaggaattct tatgaaagta tttgcaagtc catctcgcta tattcaaggt aaacatgtcc
    52141 ttttccaagg tgcagaagct atcggaaaat tgggaacaaa gcctttgatt ctttgtgatg
    52201 atttagtata tgggattgtc ggtgagaagt ttttgtccta tctcgttgaa gaagggatgc
    52261 aagtctatcg tgttgccttt aatggagaag catctgataa ggaaatccag cgcgtcgtag
    52321 aaatcggaaa agaacaggct agtgacgtcg taatcggtct aggtggtggt aagacgattg
    52381 actcagccaa ggcgattgct gatttactag gagtgccagt tgtcattgct ccaacaattg
    52441 cttcaacaga tgctccgaca tctgctttat ctgtcattta ttctgaagaa ggggcgtttg
    52501 aacgctatat tttctataag aaaaatccag atcttgtctt ggtagataca gcgattattt
    52561 gtcaagcacc gccacgtctt ttggcttctg gtattgcaga tggcttggcg acgtgggtag
    52621 aagcgcgtgc tattttacaa agcaatggaa caacaatggc aggaggaggt cagacacttg
    52681 ctggtatcgc tattgcacaa acctgtgaac aaacactctt tgaatacgga cttcaagcca
    52741 tggccagctg tgaagccaag gttgtgacag ctgctttaga gaatattgtt gaagccaata
    52801 ccttgctaag tggtttagga tttgaaagtg caggtttggc tgcggcgcat gcgatacaca
    52861 atggattcac cgccttggag ggagacattc accatttgac acatggtgaa aaagtggctt
    52921 atgggacctt gacccagctc ttcttggaaa accgtccgaa agaagaattg gaaaaataca
    52981 tccgtttcta tcaagccttg aatcttccaa caactttgga ggagttacat ttggctgatg
    53041 ctggttatga agatctattg aaagtcggcc aacaagcgac gattgaagga gaaacaattc
    53101 acggtatgcc atttgctatt tcagcagaag acgttgcaga agctctgatg gcagttgact
    53161 actatgttcg ctcattagat aaataagaag agcattcaca gttgagcatg tccatctaaa
    53221 ctggtgaata gaggttcgaa gtaattgcct tgggaaattc tttctcaggg cttttcattt
    53281 gaaaaaatta tgatataatt gttaaatata aaatatttag aaaattttga agaattgact
    53341 taaaggagat ttctatggcc tatgtagtag ctgttgttgg tgccactggt gcagttggtg
    53401 cccaaatgat taaaatgttg gaagagtcaa cacttccaat cgagaaagtg cgtttccttg
    53461 cttctgcccg ttcagcaggt aagaccttgc agtttaaggg gcaggatatt gtcattgaag
    53521 aaacaacaga aacagccttt gaaggagtgg atattgccct cttctcagct ggtggctcta
    53581 catctgccaa gtacgctcct tacgctgtaa aagcaggagc tgtagtagtt gacaatacct
    53641 cttacttccg tcaaaatcca gatgttcctc tggttgttcc tgaggtaaat gctcacgcgc
    53701 ttgatgccca caatggtatc attgcttgtc caaactgctc aaccattcaa atgatggttg
    53761 ccttggagcc tgttcgtcag aaatggggct tggagcggat catcgtatcc acctatcagg
    53821 cagtctctgg agcaggtatg ggagctatct tggaaacaca agctcagctt cgttctgtct
    53881 tgaatgatgg cgtggaaccc aaagcggtag aagcgaatat tcttccttct ggtggcgata
    53941 agaagcacta tccaatcggt ttcaatgcta ttccgcaaat cgacctcttc actgaaaatg
    54001 actacacata cgaagagatg aagatgacaa aagagactaa gaaaatcatg gaagatgaca
    54061 gcattgccgt ttctgcaacc tgcgtccgta ttccagtctt gtcagctcac tctgaatctg
    54121 tttacattga aactaaggga attgcaccga ttgatgaagt gaaggcagct attgcatcct
    54181 tcccaggggc tgttttagaa gacgatgtgg ctaatcaaat ttatccgcaa gccattaatg
    54241 ctgttggtag tcgcgatact tttgttggtc gcatccgtaa agatttggac aaggaaaacg
    54301 gtattcacat gtgggttgtt tctgacaact tgctcaaagg cgctgcatgg aactctgttc
    54361 aaatcgctga aacccttcat gagcgtggtc tagttcgtcc aacggcagaa ttgaagtttg
    54421 aattgaaata attttattaa ccaaaagtac acaaaaggct gcactcagcc ttttttagca
    54481 acaatcagta agagaggaag cctatgtcta ttcaagattt acgtgatgta aaaattatta
    54541 cagcaatgat tacccctttc aaagaagatg gctcgattaa ttttgaagtt ttacctgagt
    54601 tgattgagca tctgttgtcc catcacacag aagggatttt attagcagga acaactgctg
    54661 aaagtccaac cctgacacac gaggaagaac tggaactatt tggtgctgtg caaaaaattg
    54721 tcaatggtcg tgttccccta attgcaggta tcggtacaaa cgatacgcgc gactcgattg
    54781 agtttgccaa agaagtggcg gcattcggcg gctttgcggc agggcttgct atcgtgcctt
    54841 actacaacaa accctctcaa gagggaatgt atcagcactt caaggccatt gcagatgctt
    54901 ctgatttacc aatcattatc tacaatattc cagggcgtgt tgtggtcgaa atgacaccag
    54961 aaaccatgtt gcgtttggca gagcatccaa atatcatcgg tgttaaagag tgtacaagcc
    55021 ttgccaatat ggcttaccta attgagcata aaccagaaga cttcttgatt tatacaggtg
    55081 aggatggcga tgctttccat gcaatgaact tgggagcaga tggtgtgatt tctgttgcat
    55141 ctcacacgaa tggtgatgag atgtatgaaa tgtttacagc catcgaacaa caagatattc
    55201 gaacagcagc cgctattcaa cgcaagttca ttccgaaagt caatgccctc ttctcatatc
    55261 caagtcctgc accagttaag gcggttctta attaccttgg atttgaagtt ggtccactcc
    55321 gcttgccgtt ggttccatgc ccagaagaag atgccaaacg cattatcaaa gtagtcgttg
    55381 acggcgacta cgaagcaact aaagccactg tgacaggagt cgtaagaccg gattattaaa
    55441 aatgtctggg ggagtgaaac agttcgggga actgtttcag ctggtcacca agaaatatga
    55501 aagtgaccat agaagacccg agcctggaaa ctggaaagcg aggatagtta ggggataaga
    55561 atagtccagt ggactattct tatctgagct tgaaaataaa aaagcgaagt attttaacgt
    55621 gagccttgaa ataagagagc gaacaatgtc tgggggacat ttacaattag cgaagcaatc
    55681 ggaacctttg ttttgactcg gagtttctct tggtggtccg acaggatatg ccctaaaccc
    55741 tgcgcgtgac cttggtcctc gtatcatgct tgccatcctt ccattgaagc ataagggaga
    55801 ttcagattgg ggctatgctt gggtaccagt agttggtcca atcatcggag gcttgcttgc
    55861 ggctgtcctt tatggtctca ttttttaaga aatatccttc tctaatcagc aatggttagg
    55921 gaagtttttt tattacgtag ataccaaata agggaggaac tggtcttatg gagaaaacaa
    55981 gcaaacaaaa aagacctgaa caagtt
//
LOCUS       DASGBY010000002        46923 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.002, whole genome shotgun sequence.
ACCESSION   DASGBY010000002 DASGBY010000000
VERSION     DASGBY010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 46923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 46923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..46923
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.002"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(453..3147)
                     /locus_tag="U1396_000056"
                     /pseudo
     CDS             complement(453..3147)
                     /locus_tag="U1396_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638462.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
     gene            complement(3716..5893)
                     /locus_tag="U1396_000057"
     CDS             complement(3716..5893)
                     /locus_tag="U1396_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910563.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5341286.1"
                     /translation="MNSKIFSLRKSKMGLVSVAIAFLWIGTGMNMETAMAEETDATAL
                     ETQLESKESSLTNTVSENAEAEEVTDEVPSEEKKSEEMEDMEEELPFIENHLEVAPIQ
                     AGDQTISGNTTPGGYVAITIDGEAITSIENILEADDKGDFSYRLSKPLAHSQTVEISA
                     LPKQFWTLEADSEERKVVVRTNRHPEAYEIPAKRLEKTSNGMHQVFIEPVFEHTSKVI
                     GHTSVKGSVYLSINGSFVSDKTLIDPKDGRFEVTFSESLAGSKFKADDRLVLSFVSED
                     GQPVITNTIVKPLVKEKVSSQMTVKPLSSATSVLEGTTFPLGRVHLYNADTSEFIMEA
                     IADETGHYKIALPALQSEDKYYRLTHNQQEDLVSVHLDTVDGSSILLDKSVMASLATY
                     LQDADMDEATDEDPIIVPKLHNKKDYIVGRTIHLNAYVRMVSSIKGKQYPPVQVDELG
                     FFGFQIQDLQLPFEKGERIRFEIIDPVTNNIIASKEEVVGQYLEDEDVMDLPFQVEKV
                     TTDHGYISGKTAPDVMIELVSTQNGEEIIGKTSTDSTGRFEFDLGSRVLKNGETLSFR
                     AFDKEGEQVAWEVVTVQKGNGHRINKPDKKDEKEEQPSKEITKNIEQSDTLEQTTLPP
                     VRQTLTDKKVEQNAEPSKEETVSIFDDSKKDMPTKQEKMARTVRDKGTKGNVSVHDSG
                     ENTQVQSLPKTGEKTSLVANIMLSIILFLFALFIGKKKITESE"
     gene            complement(6495..7430)
                     /locus_tag="U1396_000058"
     CDS             complement(6495..7430)
                     /locus_tag="U1396_000058"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HEM5341287.1"
                     /translation="MSKFLVFGHQNPDTDAIASSYGWAHLEREVFGRDAEAVALGTPN
                     EETAFALDYFGVTAPRVVESAKAEGVSQVILTDHNEFQQSIADIKEVEVAAVIDHHRV
                     ANFETANPLYMRLEPVGSASSIVYRAFKENGVTPPKEVAGLLLSGLISDTLLLKSPTT
                     HTTDPQVAAELAEIAGVNLEEYGLTLLKAGTNLASKSAEELIDIDAKTFGLNGNDVRV
                     AQVNTVDIAEVLERQAEIEATMTAASAANGYSDFVLMITDIVNSNSEILALGSNMDKV
                     EAAFNFKLENNHAFLAGAVSRKKQVVPQLTDAFNA"
     gene            7568..9265
                     /locus_tag="U1396_000059"
     CDS             7568..9265
                     /locus_tag="U1396_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEM5341288.1"
                     /translation="MKFSDYTYVRPDYETIKAQFSDLTDQLAQASDLETTRTLVAAVT
                     KLLNLVDTQYNLWMIRHTIDMNDEFYNEETKFWNEYSPLFEELTTNYYRVIVQTPYKA
                     ELADILPETFFMQAENKLKTFSSDVIPLFQKENELTDEYSKLIAGAEIDFQGQTYNLA
                     QMGPFGQSTDREVRKAASAATTAFFESKEADFDRVYDELVKVRTEIAHKLGFKDYVEY
                     GYLKMNRFDYNRDMVKVYREEILKHIVPIVQNLRQRQAKRLQVPSLKHYDLNLEFLDG
                     NAVPQGDPDFIVSQAKDMYRELSAETGEFFDFMIEHELLDLVAKPGKNSGGYCTYIPD
                     FKSPFIFSNFNGTSGDIDVLTHEAGHAFQVYRSRWIQSPEVVWPTYETCEIHSMSMEF
                     MTWPWMDRFFKEQVDKYKFTHLASALLFLPYGVLVDHFQHEVYEHPEMTPAERKATWK
                     KLQDLYLPDRDYSESEALNRGIFWYRQGHIFASPFYYIDYTLAQVCALQFWKRTQVDH
                     DENAWEDYIRICDLGGTKSFLQVVEAANLQSPFKEGALESTAKAAADWLNAVKDSDL"
     gene            complement(9374..10165)
                     /gene="pflA"
                     /locus_tag="U1396_000060"
     CDS             complement(9374..10165)
                     /gene="pflA"
                     /locus_tag="U1396_000060"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HEM5341289.1"
                     /translation="MMTEIDYRKVTGLVHSTESFGSVDGPGVRFVVFMQGCHMRCQYC
                     HNPDTWDLVNPAATERTAEDVLNEALRFRMFWGKEGGITVSGGEATIQIDFLIALFTL
                     AKEKGIHTTLDTCALTFRKTERYLEKYSRLMEVTDLVLLDIKEMNPEQHRIVTGHSNK
                     TILECAQYLSDIGKPVWIRHVLVPNLTDRDEDLIELGKFVKTLKNVERFEVLPYHNLG
                     EFKWRELGRPYPLEGTKPPTKARVENAKALMETETYQEYLNRIKG"
     gene            complement(10286..11623)
                     /locus_tag="U1396_000061"
     CDS             complement(10286..11623)
                     /locus_tag="U1396_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM5341290.1"
                     /translation="MEDPGSQTIYLQLLILFLLTLFNAFFSASEMALVSLNRSRVEQK
                     AADGERKYIRLLQVLENPNNFLSTIQVGITFISILSGASLANDLGAVFAKWMGNSTTA
                     QTAGYWLALAMLTFVSIVLGELYPKRIAMNMKENLAVVTAPVIIFLGKIVSPFVWLLS
                     AATNLISRITPMNFDDADEQMTRDEIEYILTKSEKTLDAEEIEMLQGVFSLDELMARE
                     VMVPRTDAFMVDIEDDTATIMAAILKQNFSRIPVYDGDKDNIIGLIHTKKILSEAFSN
                     GFDNLNIRRIMQEPLFVPETIFVDDLLTSLRNTQNQMAILLDEYGGVAGLVTLEDLLE
                     EIVGEIDDETDKTEIFVREIADNTYIVQGNMTLNDFNEHFEMELESDNVDTIAGYYLT
                     GVGTIPSQDEKVSFEVDSKDHHLVLINDKVKNGRVTKLKLLITPLEKEETDKD"
     gene            11756..12535
                     /locus_tag="U1396_000062"
     CDS             11756..12535
                     /locus_tag="U1396_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341291.1"
                     /translation="MIISMKNVHYKRQGKTMLEDINWEFKKGERWAILGLNGAGKSTL
                     LRILMAEFWKTSGDLTVLGVEFGKGDIPSLRTKIGVVGSFLAERFPIDLTAEQIVLTG
                     KYKSSILYREYGQAELDEAIDMLKTIKAEHLIGRAYASLSQGERQLLLIARSLMEEPA
                     ILILDEATVGLDLLARERLLHHIDYLCQLPTAPAIIYVTHHAEEITDNFTHVLLLKDG
                     MVLAQGPKEDILTPELLSDFYGNQVELIDLGEGRLFIKPIL"
     gene            complement(12551..13105)
                     /locus_tag="U1396_000063"
     CDS             complement(12551..13105)
                     /locus_tag="U1396_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5341292.1"
                     /translation="MLRPLHMAHAFLDEILTDQDLAVDATMGNGHDTLFLAQRAGKVV
                     AFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQYVDECKAAIFNLGYLPSADKSV
                     ITLPATTLQAIEKVLNRLVVGGRLAIMIYYGHEGGALEKDAVLDFISQLDQTVFTAML
                     YKPLNQVNTPPFLVMVERLKSSSN"
     gene            13236..13880
                     /locus_tag="U1396_000064"
     CDS             13236..13880
                     /locus_tag="U1396_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEM5341293.1"
                     /translation="MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLK
                     AWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAGLVVLLCHFQVLNLTETILILAG
                     LVLTIYDIKHQEYPFAVWLIFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
                     YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI"
     gene            13988..15448
                     /locus_tag="U1396_000065"
     CDS             13988..15448
                     /locus_tag="U1396_000065"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEM5341294.1"
                     /translation="MTLFKDDSLTLHTDLYQINMMQVYFDQNIHNKHAVFEVYFRSQP
                     FKNGYAVFAGLERVVNYLNNLSFSQTDIDYLTELGYPQDFLDYLSQLEMTLTVRSAKE
                     GDLVYANEPILQIEGPLAQCQLIETALLNIVNYQTLIATKARRIKAVIEDEPLMEFGT
                     RRAQEMDAAIWGTRAAFIGGASATSNVRAGKIFGIPVAGTHAHALVQTYGDDYKAFKA
                     YAETHHNCVFLVDTYDTLRIGVPAAIKVAKEMGDKINFKGVRIDSGDMAYISKKVRQQ
                     LDDAGFTDAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVS
                     IEDEDGNMRDTIKLSSNAEKVSTPGKKQVWRITSKEKGKSEGDYITFADTDVTQMDNI
                     YMFHPTYTYINKTIENFDARPLLVPIFEKGKQVYELPSLAEIQTYANQEFDKLWDEYK
                     RVLNPQLYPVDLAQDVWDNKMNLINRIRKQTQTKSI"
     gene            15461..16285
                     /gene="nadE"
                     /locus_tag="U1396_000066"
     CDS             15461..16285
                     /gene="nadE"
                     /locus_tag="U1396_000066"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HEM5341295.1"
                     /translation="MTLQETIIKELGVKPSIDPKEEIRRSIDFLKDYLKKHPFLKTYV
                     LGISGGQDSTLAGRLAQLTMEEMRAETGDDSYQFIAIRLPYGVQADESDAQAALAFIQ
                     PDVSLTINIKESTDAMVAAVNANGLAMSDFNKGNAKARMRMIAQYAIAGERKGAVIGT
                     DHAAENITGFFTKHGDGGADILPLFRLNKRQGKQLLAALGADEKLYLKVPTADLEEDK
                     PGLADEVALGVTYNQIDDYLEGKTIDPQSQTIIEGWWNKTAHKRHLPITIFDDFWK"
     gene            complement(17159..17686)
                     /locus_tag="U1396_000067"
     CDS             complement(17159..17686)
                     /locus_tag="U1396_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5341296.1"
                     /translation="MRKFFQADGNLTMLGRQICKTLAGAYALAIVLLCFLPQTWYPQY
                     KDFSTPGIIQIGRLYLLPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLL
                     FLREEWRSLRAVIRYSFCISLFIECTQLLLDLLIDAQRVFEIDDLWTNTMGGILAYFT
                     YSLIMRGIILSKQES"
     gene            complement(17683..18795)
                     /gene="rlmN"
                     /locus_tag="U1396_000068"
     CDS             complement(17683..18795)
                     /gene="rlmN"
                     /locus_tag="U1396_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEM5341297.1"
                     /translation="MKPSIYAFSQANLVDWILENGEKKFRATQIWEWLYRSRVQSFAE
                     MTNLPKSLIEKLEEHFVVNPLKQRIVQESKDGTIKYLFELPDGMLIETVLMHQHYGLS
                     VCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDERNQNERVSHIVVM
                     GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFACEGVQVNLAVS
                     LHAPNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNRRVTFEYIMLNEVNDGVEQAQE
                     LADLTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGT
                     DIDAACGQLRSNTLKKDREKARARIAAAKAKAGIRA"
     gene            complement(18804..19445)
                     /locus_tag="U1396_000069"
     CDS             complement(18804..19445)
                     /locus_tag="U1396_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1027 domain-containing protein"
                     /protein_id="HEM5341298.1"
                     /translation="MKKEISPEMYNYNKYPGPSFARVGDKVVSENIELDLLEDYKNAF
                     DQTIFGQRFSQLMLKFDYIVGDWGNEQLRLRGFYTDDKNVKSDLKISRLDDYLTEYCN
                     FGCAYFVLANPNPQDLPAEEEDRPRRKRSRSRNRNRNQQRTELIEPKENKSNRNDRQK
                     KGKQQNKQSEQRHFTMKNAGVKASQTERSQKHERKQSKREMNEVKRNFVIRQK"
     gene            complement(19633..20682)
                     /locus_tag="U1396_000070"
     CDS             complement(19633..20682)
                     /locus_tag="U1396_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEM5341299.1"
                     /translation="MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQV
                     LTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDPYTTVRSSEEMTGGADNEEYFRI
                     ARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
                     TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEV
                     QSSVPIDFQTGDIGGPSAGLMFTLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGG
                     ADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEAAEKAGLDIEVVPVK
                     TVQEAIDYLKKTKGE"
     gene            complement(20669..21157)
                     /gene="coaD"
                     /locus_tag="U1396_000071"
     CDS             complement(20669..21157)
                     /gene="coaD"
                     /locus_tag="U1396_000071"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEM5341300.1"
                     /translation="MSDKIGLFTGSFDPITNGHLDLIERASGLFDKLYVGVFTNPKKA
                     GLLTGLERKAILEKLFVGMENIEVVLSENELVVDVAKRYGVTHLVRGLRNATDLEYES
                     SFDFYNRQLAPDLETIYLIAKPELKFVSSSQVRELLYFKQDIGPYVPEIVSEEIRKNE
                     EK"
     gene            complement(21147..21686)
                     /gene="rsmD"
                     /locus_tag="U1396_000072"
     CDS             complement(21147..21686)
                     /gene="rsmD"
                     /locus_tag="U1396_000072"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEM5341301.1"
                     /translation="MRIVSGSYGGRPLKTLDGKTTRPTSDKVRGAMFNMIGPYFEGGR
                     VLDLYAGSGGLSIEAISRGMESAVLVERDRRAQAIIRENIAMTKEADKFQLLAMEARQ
                     ALNSVGGPFDLVFLDPPYAEQEIEDVITELCRRDLLADDVMVVCETDKAVSLPEEIAE
                     LGIWKEKLYGISKVTVYVR"
     gene            complement(21985..22707)
                     /locus_tag="U1396_000073"
     CDS             complement(21985..22707)
                     /locus_tag="U1396_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM5341302.1"
                     /translation="MEKKFEKLSLAEIGIISFMGLILLISLGASWYKNAQSETSDTKT
                     VQQVPNQKKTVDTLFQDAENAVIVLEGTHTEEKLAEAQSAVNKVTDATKKAALQKRID
                     QVKELVGQQTDAQTQAKLKAELVRAEAAQKVADEKKVSETGTSQSTDLAEASETSQES
                     YVVPNQNIYGNQSVSSTSQYTSSVASTSTSASVPPTSEGAPVVETPTVSETPAETTDS
                     TTSLVESVETVPTADESSPDNP"
     gene            complement(22764..23150)
                     /locus_tag="U1396_000074"
     CDS             complement(22764..23150)
                     /locus_tag="U1396_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM5341303.1"
                     /translation="METFWVFLVFLAVLGAWMGFNYWRLRRAATVIDNAEFAEKIHGG
                     QLIDLRDPSEFNRKHILGARNIPYQQLRQSTAALRKDRPVLIYENDRGQLVTPAALHL
                     KKQGFNEIYILSYGLNGWNGKVKTTK"
     gene            complement(23150..23368)
                     /locus_tag="U1396_000075"
     CDS             complement(23150..23368)
                     /locus_tag="U1396_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HEM5341304.1"
                     /translation="MKRLYDVQQLLKRFGIIVYMGNRLYDIEMMQIELNRIYQAGVLD
                     RLEYMEAELVLRREHRLELEYQKSRENE"
     gene            complement(23668..24270)
                     /locus_tag="U1396_000076"
     CDS             complement(23668..24270)
                     /locus_tag="U1396_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5341305.1"
                     /translation="MRILVAEDQAMLRDALCQLLGFQDAVEAVLQAENGSQAIALLEK
                     EPVDVVLLDIEMPEKTGLDVLEWVRGQALPVKVVIMTTFKRPGYFERAVKADVDAYVL
                     KERSIADLMRTIETVLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIA
                     CQLHLSDGTVRNYMTSILSKLGAENRTAAVRIAQEKGWLV"
     gene            complement(24267..25361)
                     /locus_tag="U1396_000077"
     CDS             complement(24267..25361)
                     /locus_tag="U1396_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5341306.1"
                     /translation="MIFEKRKVPLMFFVGMIFLYFPLYYAQYTPNPTAVVLATILFAL
                     VYCSLFYTDHKLYSMLAWFYLIGYIAVMSFWGNLQFSLFIFNLSNMLGWYYKENRPTY
                     RTVSYGLLLLAIILWALFGPVPFEMRAFALVIHFFGLALLIFSWIETKRAALQQRLQE
                     QNASINLLLAENERNRIGQDLHDTLGHVFAMLSVKAELVQTLLDHDQIDQAKKEVADL
                     QTLAKDSMQEVRQIVQSLKQHTVAEELQILQQMLDLAGVDLVVLGGEIAEQLSLPVQN
                     KLAMVLRELANNLLKHSQASKCRLVFEKDQQELVVYYEDNGVGFAQLTGQELHTIKDR
                     LVTVKGSLEFISLAKPTRLSIRIPFEEVVE"
     gene            complement(25370..26101)
                     /locus_tag="U1396_000078"
     CDS             complement(25370..26101)
                     /locus_tag="U1396_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5341307.1"
                     /translation="MKALVQVEAVKLSRSLGVFLLSIGMPVIFFLIFSSTVQFDDATM
                     QKAFIQSYMLTMTGFSMSGFALFTFPMMLAEDRNNSWLTFIQHSPLPIWQYYLSKLVR
                     VLLCFVSSIAVVFAVGGLVKGVEMTAQEWVISALLLLVTSIVFLAIGLLLVQIQSEQT
                     MSVVANLLYFVLAIMGGSWMPVSLFPDWVQRICKLMPSYHVNQLVTTYAQEGDFLWKS
                     LLIVLGYAIIFLGIALVMNRKTEQQ"
     gene            complement(26098..26976)
                     /locus_tag="U1396_000079"
     CDS             complement(26098..26976)
                     /locus_tag="U1396_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341308.1"
                     /translation="MIEVRALDKVIKGRTILSDISFEIKSGECVALIGPNGAGKTTLM
                     SCLLGDRKATKGQVLLDGLAPQAQSNKEKVAVLPQENAIPTDLKVKELLRFFQAIYKD
                     SLTDVEIDSLLCFSPEQKNQLAGKLSGGQKRLLAFVICLIGKPKLLFLDEPTAGMDTS
                     TRQRFWEIVHELKEKGVTIFYTSHYIEEVEHTAERILVLHQGRLLRDTTPFAMRSEEQ
                     EKEVTLPIAFAAVVESLAEINEISYKQDTVSFKTRAIEQVWASLQEAGCRISDLEVQN
                     KTLLNSLFDKTREEES"
     gene            complement(27231..27749)
                     /locus_tag="U1396_000080"
     CDS             complement(27231..27749)
                     /locus_tag="U1396_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEM5341309.1"
                     /translation="MMKQKYYQSPAEIASFSPRPSLADSKAVLNQAVADLSVAHSILH
                     QVHWYMRGRGFMIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFSTLKEFSENSQLKE
                     VPGDYNVTIEEQLVRVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEKHIW
                     MLQAELGQAPKL"
     gene            27954..28166
                     /locus_tag="U1396_000081"
     CDS             27954..28166
                     /locus_tag="U1396_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEM5341310.1"
                     /translation="MSEEKFDAKLEQLSGSAKEVIGKLTGDKEIEVEGLVEKGIGKAK
                     ELVEDAKDGLEGAINGIKKAFDKEEK"
     gene            28336..28770
                     /locus_tag="U1396_000082"
     CDS             28336..28770
                     /locus_tag="U1396_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEM5341311.1"
                     /translation="MKKIVFVCLGNICRSPMAEFVMKDMTSQFHIESRATSNWEHGNP
                     IYSGTQKIFQKHKIPYDKTKTSQQISQADFEEFDVIIGMDSNNVRDLQKMAPAHAQNK
                     IFQFAEKSVPDPWYTGDFDETYEMVKKGCQDWLDRLQSFDQE"
     gene            28902..29324
                     /locus_tag="U1396_000083"
     CDS             28902..29324
                     /locus_tag="U1396_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341312.1"
                     /translation="MKEFKLPSIKWHDITSHFTRPKLEILSLIIILICALSVFTGRIA
                     SKQAMTFNNGALQYNGYVVANKMNGQGKLTFDNGDVYEGQFKNGIFHGQGTYTSASGW
                     VYTGQFKNGYADGKGKLTTEGQATYEGTFKQGIYQYEN"
     gene            29314..31113
                     /locus_tag="U1396_000084"
     CDS             29314..31113
                     /locus_tag="U1396_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEM5341313.1"
                     /translation="MKIKWLSVIRVIGLVFVLLYHFFIKYFPGGFVGVDLFFTLSGYL
                     TTALLIDEFAKHKKIDIVSFFRRRFYRILPPLVLTILLVLPLALLVRNDFIANIGNQI
                     AAALGFMTNFFEILSGGSYENQFSPHLFVHTWTLAIEVQYYLVWAGLVWYLTRISKSV
                     GQLRGSIFLTSISLFSLSFLAMSISSFFVDNFSTIYYSSFTHTFPFFLGSVLATIAGI
                     GNTTTAFQQQVNTLSIKQAIGLFLGGLGVELLLLFTLQFSSIWTYLIGFLLSSLATAT
                     MIFAARVLHEKTEDVKEPAIILFFASISYGIYLFHWPLLIIFTQLTNATIAAGLSFVF
                     STILSTISFYILEPYIAGKVGSLFGLPIDLKTYKKWLLGSFACLTIVGLGICLFAPKL
                     GSFEQESMVSNLYQAQTQLNTTRSAAENAKATSFEIQKGVIIFGDSVTVRASSAIQTA
                     LPDAQIDGTVSRNLSEIAKLINLYKQNNSLKETVVVTLGTNTTDNYQELLDQLVKDFP
                     KGRRLIFVTPYDGNFTPSESISYQTGQYEKELAEKYDYISIADWYQVAKDNPPIWYNT
                     DLVHFNLESNGGEVFAQTIKNAVEAVADGPIKN"
     gene            complement(31337..31990)
                     /locus_tag="U1396_000085"
     CDS             complement(31337..31990)
                     /locus_tag="U1396_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM5341314.1"
                     /translation="MKNKQIHLRNASFFALAFVILGYVVKFYPSTLAGFDSTVQSAIR
                     GNLPSGASQFWTSITVLGNTVIILAITLILAAIFYYYKKWKIEAYFLLASFAAMGVAS
                     TALKYVYQRPRPSIEWLIDTIGYSFPSWHTASTMMIVGAVVIIVHQRMKKGIARLVLK
                     AVLILLAVLVAVSRIYIGVHYPTDIIGGWLLAVTLLQMMYPFYDQKRFEWRFQSKQK"
     gene            complement(32015..32572)
                     /locus_tag="U1396_000086"
     CDS             complement(32015..32572)
                     /locus_tag="U1396_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5341315.1"
                     /translation="MTNTRKMTIIAILSAVSFLLMYLKFPLIPTASFLEVDFSLVPIL
                     FGLLVLDMKSSFAILLVRTFLKLILNNQGPSTIIGLPMNIAAMSVFILAVAYFWKNEQ
                     TLKNYLKAAAVATIGSTAVMLVLNYVYAVPVYAAFANFDIKEILGLTNYLLMMVLPFN
                     LLQGIVLSAIFYICYKAAQPILKKV"
     regulatory      complement(32632..32846)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(32896..33441)
                     /locus_tag="U1396_000087"
     CDS             complement(32896..33441)
                     /locus_tag="U1396_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEM5341316.1"
                     /translation="MNIETLEYIEETAKNHIVLFEPQIPQNTGNIARTCAATNSPLHI
                     IKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNLAEFMDYASKQGRVHLVSKFADKTYSD
                     EDYNDGNIHYFLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEA
                     LRQQQFAGLDLVHTYDGDKLK"
     gene            complement(34009..34248)
                     /gene="yidD"
                     /locus_tag="U1396_000088"
     CDS             complement(34009..34248)
                     /gene="yidD"
                     /locus_tag="U1396_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002272085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEM5341317.1"
                     /translation="MTRLLIGLVRFYQKFISPLFQPSCRYRPTCSAYMIEALQKHGLR
                     GFLMGLARIGRCHPFVEGGEDPVPDRFSLKRNKQK"
     gene            complement(34248..34979)
                     /locus_tag="U1396_000089"
     CDS             complement(34248..34979)
                     /locus_tag="U1396_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5341318.1"
                     /translation="MRINKYIAHAGVASRRKAEELIKQGLVTVNGQVVRELGTVIKSG
                     DKVEVEGKPIYNEEKVYYLLNKPRGVISSVSDDKGRKTVVDLLPTVKERIYPVGRLDW
                     DTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRGVVIDGKKTKP
                     AVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGNLDLTGLRP
                     GEYRKLNKKDISKLHTLAVTKPVKK"
     gene            complement(34969..35538)
                     /locus_tag="U1396_000090"
     CDS             complement(34969..35538)
                     /locus_tag="U1396_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein B"
                     /protein_id="HEM5341319.1"
                     /translation="MNRLAEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSE
                     KYMADKASGLAILESSNRYKLVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQ
                     PITRIEVDDIRGVNSSGAISKLQAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSL
                     EELPDVSEIDLIQEETELFVERNELENEN"
     gene            complement(35522..36241)
                     /locus_tag="U1396_000091"
     CDS             complement(35522..36241)
                     /locus_tag="U1396_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEM5341320.1"
                     /translation="MDIKLKDFEGPLDLLLHLVSKYQVDIYEVPITEVIEQYLAYIAT
                     LQAMRLEVAGEYMLMASQLMVIKSRRLLPKVVEQIDPEDDPEMDLLDQLEEYRKFKLL
                     SEKLGEQHDERANYFSKPKLDLIYDDVQLAKDKTIIDIFLAFSKVMAEKQASLRQSHA
                     TIARDEYKIEDMMDFVRSRFETGPRLELRQLFQESQDVNEMITIFLATLELVKVHEIV
                     LEQTETFGDIYLVRSEDESLS"
     gene            complement(36241..36972)
                     /gene="xerD"
                     /locus_tag="U1396_000092"
     CDS             complement(36241..36972)
                     /gene="xerD"
                     /locus_tag="U1396_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEM5341321.1"
                     /translation="MKQAIESFIQSKKVSVNSQKSYTYDLQQFVTVTKGEISQQSLLV
                     YQQSLLDLKPAAQKRKMSAVNQFLYFLYENNLLDRFYKLQTMSEPASVKKKLEREDLT
                     LLFQESPWLDGQLITLLIALLGLTPSEIAELTSQQVNLDFQVLTVEKGGAKRVLTLPK
                     ELIPYMESHLSGRYVFDKKGQTYSRQWFFNRLTEFVQSIGKPDWTAQKLREQYILKHM
                     DEGKSLDQIAKQLGLKTSMSLEKFR"
     gene            complement(36969..37427)
                     /locus_tag="U1396_000093"
     CDS             complement(36969..37427)
                     /locus_tag="U1396_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM5341322.1"
                     /translation="MIAREFEVFLLDQEGTFLTPADKLAVIIDTHNIDHAKLLLSHMT
                     YSRVPVVTEDGRFFGTIGLTEIIKYQAENELSDDELNRDISVIVKTDEETVGLDYDLT
                     EVMRKLIDQSFLPVLGENREFLGIITRKSILKAINALLHNFPLASKEGKK"
     gene            complement(37424..37951)
                     /locus_tag="U1396_000094"
     CDS             complement(37424..37951)
                     /locus_tag="U1396_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5341323.1"
                     /translation="MAGASKTILVMSDSHGDRQIVEDIKHHYLGKVDAIFHNGDSELD
                     SQDSLWDGIQVVNGNCDYFGGYPDQLITQLGDVTIAQTHGHLYGINYGWQRLDYWAQE
                     VDADICLYGHLHVPDAEVRGKTLFLNPGSVSQPRGLVRECLYALVTIYDDHFHVDYYN
                     RQHQLYPALTKDISR"
     gene            complement(37924..38934)
                     /locus_tag="U1396_000095"
     CDS             complement(37924..38934)
                     /locus_tag="U1396_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-triphosphate diphosphatase"
                     /protein_id="HEM5341324.1"
                     /translation="MTDKIYEYRDEHNWFIGKASFANLFGSFGENGREQEIYQIGQLF
                     DKLIAGNYEDENFNQCVNIEVIKLQSEFALFQFACDTLNELNNRQFKVLQHQGAILVT
                     ENDKLLLVHLPQAGVSTADFFGQDKGLASVGDTILIATKNEGKTKEFRKFFERFGYQV
                     ENLNNYPDLPDVAETGMTFEENARLKAETIAELTGKMVLADDSGLKVDALGGLPGVWS
                     ARFSGPDATDELNNAKLLHELAMVFELKDRSAQFHCTLVMAAPNRDSLVVEADWEGFI
                     GMDLRGEDGFGYDPLFLVGETGKTSAELTLEEKNKISHRAQALEKLVEAFPVWQEQAK
                     QS"
     gene            complement(38931..39725)
                     /gene="racE"
                     /locus_tag="U1396_000096"
     CDS             complement(38931..39725)
                     /gene="racE"
                     /locus_tag="U1396_000096"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000370386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEM5341325.1"
                     /translation="MDNRPIGFLDSGVGGLTVARELMRQLPHEEIVYIGDSARAPYGP
                     RPAEQIREYTWQLVNFLLTKNVKMIVFACNTATAVAWEEVKEKLDIPVLGVILPGASA
                     AIKATQTGKVGVLGTAMTIQSDIYRQKIQALSPETQVDSLACPKFAPLVESNSHQSSL
                     AKKVVYETLRPLVGKVDTLVLGCTHYPLLRPIIQNAMGKDVKLIDSGAECARDISVLL
                     NYFQINRSRTEKDIQHRFYTTASPAAFKEIAESWMGIDIHVEHVEL"
     gene            complement(39815..40051)
                     /locus_tag="U1396_000097"
     CDS             complement(39815..40051)
                     /locus_tag="U1396_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HEM5341326.1"
                     /translation="MNLGLAILLIVLAFAGGVALGIYLSRKQVENYIADKPVLDENAL
                     RLMMSQMGQKPSEAKVQQVLRQIKSQQKVASKKK"
     gene            complement(40154..41401)
                     /locus_tag="U1396_000098"
     CDS             complement(40154..41401)
                     /locus_tag="U1396_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEM5341327.1"
                     /translation="MTKTPFVSKEVLETITEQFPTPFHLYDEKGIREKARALNAAFAW
                     NKGFKEYFAVKATPTPAILKILQEEGCGVDCATDVEVLMSEKLGFKDIMFTSNDTQAQ
                     EFVYARKVGATINLDAYEHIEFLKNVAGIPETVCLRYNPGGVFSLGTDIMDHPEESKF
                     GMTKEQLMKGYKELKELGVKEFGIHAFLASNTVTNDYYPVLAHQLFELALEIREETDV
                     TLDFIDLSGGIGVNYRPEQEPNDIAVIGEGVRKVYEEILTPAGMGHIKIFTELGRFML
                     APHGHLITKVLHRKETYRTYIGVDASAANLMRPAFYGAYHHITNITRPDAPIEVVDVA
                     GSLCENNDKFAVNRELPRAEVGDTLVIHDSGAHGFSMGYNYNGRLRSSEILLQEDGTA
                     RMIRRAETPEDYFATIYGFDFDR"
     gene            41535..42866
                     /gene="pepC"
                     /locus_tag="U1396_000099"
     CDS             41535..42866
                     /gene="pepC"
                     /locus_tag="U1396_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014607929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM5341328.1"
                     /translation="MSTLDFDFTERLYANYLANPSLQATENAVSHNGLLKSLETRQSA
                     IDNDYVFSIDLTKDAVSNQKASGRCWMFAALNTFRHKLISDFKLENFELSQAHTFFWD
                     KYEKSNWFLEQIIATADQEIGSRKVKFLLDTPQQDGGQWDMVVALFEKYGVVPKSVYP
                     ESISSSASRELNQYLNKLLRQDAQILRDLLAKGASSKEVQIQKENLLQEIFNFLAVNL
                     GLPPRSFDFAYRDKDNVYHRNTNVTPQAFYEKYVGLKLSDYVSIINAPTTDKPYNKSY
                     TVELLGNVVGAPAVRYLNVEMNRFKELAIAQLKAGESVWFGSDVGQSSNRQTGIMATN
                     TYDFSSGLGIHFHQDKAGRLDYSESLMTHAMVLTGVDLDDNEQPLKWKVENSWGDKVG
                     DKGYFVASDSWMDEYTYQIVVRKEFLTQEELAAYQAQPQVLAPWDPMGALA"
     gene            complement(42916..43617)
                     /locus_tag="U1396_000100"
     CDS             complement(42916..43617)
                     /locus_tag="U1396_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEM5341329.1"
                     /translation="MNNDSFIINQVDNTALNRFFGKIYGVVAMGIGLSALVSFLAVTV
                     FQSLLLSLLSAGSIIMMLIMIGQIALVVSASAMAAKNSPMALPMFLAYSVTNGITISM
                     ILMFYTSETVVLAFVSAALMFAIMAVIGMTTKKDLSGMAQALRAALWGIIIASVINIF
                     LRSSGLSFMMSIISVLVFSGLIAYDNQRIRNVFEQTGGNVGQGWVVSMALQLYLDFIN
                     LFLNLLRIFGGLSRD"
     gene            complement(43639..44121)
                     /locus_tag="U1396_000101"
     CDS             complement(43639..44121)
                     /locus_tag="U1396_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM5341330.1"
                     /translation="MVAYKQDKEYMDYVGHLIATPKVQKLGKIPHHYYSTRLEHSINV
                     SYTSYKIAKKFGWDAKSTARGGLLHDLFFYDWRDTKFNKSHAWVHPRIAKRNAQKLIQ
                     LNKLEEDIIVKHMFGATIAPPRYKESWIVTCVDKYWAVREWSLPMQHKWKNRKVFRFQ
                     "
     gene            complement(44169..44909)
                     /locus_tag="U1396_000102"
     CDS             complement(44169..44909)
                     /locus_tag="U1396_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEM5341331.1"
                     /translation="MDIIRSKTNNLVKQVKKLQQKKYRTSSYLIEGWHLLEEAMEAGA
                     NIEHIFVVEEYFEKVAGLANVTVVSPEIMQDLADSKTPQGVVAQLALPSQLLPETLDG
                     KFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPVYR
                     MPISSILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGNEGQGISDLVADEAD
                     QLVHITMPGQAESLNVAIAAGILLFSFI"
     gene            45074..45355
                     /locus_tag="U1396_000103"
     CDS             45074..45355
                     /locus_tag="U1396_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEM5341332.1"
                     /translation="MRKVKMIASGIVQGVGFRWSVQYLAMEIGDIAGRVWNNEDGTVT
                     ILAQSENAEKLSHFIHEIRKGPSRMAKVTYLDVTLANFEDYKDFQVSYR"
     gene            45446..46339
                     /gene="yidC"
                     /locus_tag="U1396_000104"
     CDS             45446..46339
                     /gene="yidC"
                     /locus_tag="U1396_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006269468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM5341333.1"
                     /translation="MLSGMALSTLLFLSGCVQTDKSGNPTGLIWDWLGQPMSNLIRFF
                     AEDQALGFGLAIIIVTLLVRFIILPLGIYQSWKAAIQSEKMNYLKPILGPIQERMKNA
                     SSQEEQLAAQQEYFATQKQYGVSMLGGIGCLPMLIQMPFFSAIYFAARHTPGISEATF
                     LGINLGSTSLILTVVAGILYYAQSLLMQVGMDEEQKKQMKTMALMNPIMIMMFSFGSP
                     AGVTLYWVVGGLFGILQQAITNFILKPRIRKQVEEEFKNITVSATPRKTKDVTPTASA
                     VIEEKTSNKKRNRNAGKQRSR"
     gene            complement(46423..46905)
                     /gene="greA"
                     /locus_tag="U1396_000105"
     CDS             complement(46423..46905)
                     /gene="greA"
                     /locus_tag="U1396_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEM5341334.1"
                     /translation="MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDL
                     SENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETE
                     EEVYHIVGAAGADAFANKISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVEKTK
                     "
BASE COUNT        13672 a        10589 c         8713 g        13949 t
ORIGIN      
        1 atttgaacac aagctatcct catatcacca aagactgagt ggacccctac tagtcatgac
       61 cacccgtgaa aacgggtggt ttattttgtg taatttagag aaaagagtgc caaaaaacgc
      121 ataaaatcgt gttgctaaga acgttgattt tatgcgtttt attatatgac ttatctcgat
      181 atttttattg aaatttatgt ttatgcccaa ctatacttct cagaatcaat gtccatatct
      241 catctcagcc tagtatagat tgacagattt attctacatt cccagttcag cctctgcagc
      301 tattgcgaat ggctcgtttt atattcaatc tccaaagatt tcctaaaact tggatctgta
      361 cggagggtaa aacaattcga tacactatta taggcataat ctctactcta ttaaccatat
      421 gtatatacaa gtagaaatta cacgaccaac atttactccg attcttgctt acgttttgta
      481 cgataaagta cctgagctcc tacaagaaga gagagggcag ttaacgtata gattggagaa
      541 tcagcttgtc cagtagatgg aagggtatgt gatttctcgt ttgaacgatt cacgctagaa
      601 actttctcca tattttcaga aagacgtgat ttctgattca tagcaagctc tacctgattt
      661 gccaccgttt cggcattcac tttatctttg atagtagaaa ttggagcaga gttatctgaa
      721 tctttaatag tcttagaaga atctggagta tcactatttt ctgctttatc aatctcttca
      781 gttgactctg gtttcattgg gcgagacaaa tctggggtat ccgttacttt tggaattgtt
      841 gagtctggtt tatttgctga atcatcggtt gagtcttcga taggcttaag tgattctggc
      901 tcaacattat tgcctggttt tccggtctct ttaggtgact ctggttgcat tggaagagtt
      961 gcttctggaa catttggttt ttcctgcata ggtgtttcag gagtcccctt aggcgtttca
     1021 ttctctactt ttggcatatc aattggcttg tcaggaactt gtggctcaat aggaacagga
     1081 accgaaactt tcttagtttt atggttaaga gacactttta gggatgagta tactttcttc
     1141 ccaactttat cattaatctc atggctaatc tctgtactta caagtttttg ggaatctttc
     1201 ttctttttat ctttcagttg taactgataa gttaaagaaa gtggttgatt agtctgataa
     1261 gccttgatta agtcttcttt atctaagttc caagtaatag ttgttttcga gctagtaatc
     1321 catgacagcc agaacgttga agaattcttt ttaatactta ctttagggtc tttgggttct
     1381 ttaacaattt caacattatc ttcaagagta tctaccaatg tcactttagt cagtacatct
     1441 ttaaattttt ctgcaacatt ctcatcaaca cttaaaaact tcttatcatc cccagacatt
     1501 tttttcaagt attcatcaaa tttattttta ttcttttctt cgccagcttt gtctttggtc
     1561 acatcaacag cgtagacatg aataccattt ttagtagcaa tcttggcctc tgcttgagca
     1621 gagaggttgt ggttgttaaa aatatttttt ctaccgtaga aaatataatc aacgagggaa
     1681 ttcgcaaata aatcaattgc tttttcagaa gtattcgtta aaccgagctt ttcagcgata
     1741 tagctaagag tgtttgtagg taactcagct ttttttaact cagttgttaa attatgtttt
     1801 atcttgctaa caatttgatt tctaaatgtc aacggctcaa ctttacgttc ataaaagcta
     1861 cggaaatgat aaccttcacc aatttgtttc tcgtaattga aatttttttc ttctgactgc
     1921 gaactgtcta catcaaccaa attaatatag tctaacggat cttttgcaat tattcctata
     1981 agctttgtta ttcctgctat agtggataca tcatctaaag ctttatcgaa acgtgtaatc
     2041 ccaactttgt tcaaaaaact tattagactc tttgcatcat ccaacaagtt tgccctgcga
     2101 acagtcacat caaatgtaaa tggccaaggc aagagtggat ttgtatgtac aaccttattt
     2161 tcctcaatgg tcttataagt aggttttgat tttacatcat ccgacaaatc ataactaaat
     2221 gtagactccc cttgtgacag aagtacaata tgtttgcgtt tccccgagtt ctcgctttct
     2281 aaaatgcgac gtgcttcatg gattgctccc tgcatatcta cgccccaatt gtaattttgt
     2341 tcagcatcag tgaaaagctt ctcaaccgta gtttctacat tagcactggt atggtaactt
     2401 cttgagcttc agataacttg cggttgaaac cgattacacg cacagagtta cgagaattat
     2461 gatcattggt tgggtcagtc atcttttcga caagctttat aatgttatct ttagctgttt
     2521 tttagcatct ttatccattt ttttatatgt atccaccaag acaactattt ctgcaccctt
     2581 gtcaatttct ttcggcacaa tttgagttgt tactgtgaca actccctctt gatctacttc
     2641 tgctgttcga gaaactgtaa aaagctcttt agaagttttg tccactgtac tagatactgt
     2701 ttccgttggt ttttcaacct tagtagaata gtcgtctact tccttctcct catactgaac
     2761 ggttcgttct tctttttctg ttgctttttc ttcagaagaa ctagtgtttt cagcaacttg
     2821 cacttctgat tctgaagcgt tttcattcgt caatgcctca ggagaagcag attctgcatt
     2881 cgattttggt aagtccaaag tagaagagga gtcaaccacc tctccttcct tgttttcatt
     2941 agcttgggca acttcagggt cttcaacgac agcagtagac ctaatcagag aagtgctatc
     3001 tgtctccgaa gttttttcta aagtaggtgt ttctgcatat actgtcacag tatttttggg
     3061 atagagtgtt cccgataaag ctacccctgc tcctagcgaa acaagtccaa ttgatagctt
     3121 ccgcaaagtg aatttaggat gattcattat gataccttct ccttgttctc tataaattta
     3181 gaatgtattt tcacccttct ttaggtattt tcaaaaaagg aagtatggat gtcaatggta
     3241 aataacttta gtataatttt gttcaacaag cgtagagctt ttgggaaaag aataggcacc
     3301 ttgtgtattc ataaggtgcc taagtccttc tgttaactgc ttacttcacc tatcaagtca
     3361 agcaagcatg attacaactc aaagttccta tttatcatta acaatgacca tatcacaaaa
     3421 tgtgcgagtc tattactaca taactcattc taccatataa tttaaaaaca gaatttgttt
     3481 tttctctatc gtttgtttat gtttattcta ttacaaaaat gataattggt ctttgagtct
     3541 gttatcacac acatttatac aagtgataaa tattgcaatg agtcttcaaa ctctactttc
     3601 acctctataa gcaaataatt cattgaaaga aaaattttaa ctcttttaat ttaaagctac
     3661 acaatgcctc tcatctgtcg caaacgaatt tttgagagag ctttgtcatc gccttttact
     3721 cactttctgt tatctttttc ttgccaatga ataaagcaaa taagaataat atgatcgata
     3781 acattatatt ggcaaccaag ctcgtttttt caccggtctt aggcaggctt tgaacttggg
     3841 tattctcacc actatcatgc acagatacgt ttccttttgt ccctttgtct cttacagtac
     3901 gagccatttt ctcttgctta gtaggcatat cttttttcga atcatcaaaa atagaaaccg
     3961 tttcttcttt tgatggctct gcattttgct ctactttttt gtcagtcagc gtttggcgta
     4021 caggtggcaa agtagtttgc tcaagtgtgt ctgattgttc gatatttttg gtaatttctt
     4081 tgctaggttg ctcttccttc tcgtcctttt tatctggttt attaatgcgg tgaccatttc
     4141 ctttttgaac cgttacgact tcccaagcta cctgttcacc ttctttatca aacgctctaa
     4201 acgataaggt ttctccattt tttaaaacac gactacccaa atcaaattcg aatcgacctg
     4261 ttgaatcagt tgaagtttta ccaattatct cctcgccatt ctgagttgat actagttcaa
     4321 tcattacatc tggagctgtt ttgccactga tgtaaccatg atctgtagtg actttttcta
     4381 cttgaaatgg taaatccatc acgtcttcat cttccaaata ttgccctaca acttcttcct
     4441 tactagcgat gatattattt gtaaccgggt caatgatttc aaagcgaatt ctctcacctt
     4501 tttcaaaagg caattgtaaa tcttgaattt ggaaaccaaa aaatcctaat tcgtccactt
     4561 gaactggagg atactgtttt cctttgattg acgaaaccat gcgaacgtag gcattaagat
     4621 gtatcgttcg accgacaata taatcttttt tattatgcag tttaggtaca atgataggat
     4681 cttcatctgt cgcttcatcc atatctgcat cttgtaaata agttgctaaa gatgccataa
     4741 cagatttatc caataatata cttgaaccat caactgtatc aagatggaca gataccaagt
     4801 cctcttgttg attgtgagtc aatctgtagt acttatcctc ggattgtagg gcaggcaaag
     4861 caatcttata gtgacctgtc tcatcagcaa tagcttccat gataaactct gaagtatcag
     4921 cattgtatag atgcacacga cctaaaggaa atgtagttcc ttccaaaact gaagtcgcac
     4981 ttgataaagg ttttactgtc atttgtgaag atactttttc ttttaccaat ggttttacaa
     5041 tagtattagt aatcaccggc tgaccatctt ctgatacaaa agacaaaacc aatctatcat
     5101 ctgctttaaa ttttgaacct gctaaactct cggaaaaagt aacctcaaac cgtccatctt
     5161 taggatcaat tagtgtctta tcagagacaa aactaccatt tattgataga tagactgaac
     5221 ctttgacaga ggtatgacca ataactttgc tcgtatgttc aaaaactggt tcgatgaaca
     5281 cttgatgcat tccattagat gttttttcta atctttttgc tggaatttca taagcctctg
     5341 gatgtcgatt agtcctcact actaccttac gctcttcaga atctgcctct agagtccaaa
     5401 actgtttcgg caaagcacta atttccacag tttggctgtg agcaagtggt ttactcaacc
     5461 gataagaaaa atctccctta tcatctgctt ccaaaatatt ctcaatagaa gtaattgctt
     5521 ccccatctat cgtaatcgct acatatccac caggagtggt attccctgag atggtttgat
     5581 ctccagcttg aatcggagca acctctagat ggttttcaat aaatggaagt tcttcctcca
     5641 tatcctccat ctcttccgat tttttttctt cactcggtac ctcatcagtc acttcctcag
     5701 cttcagcatt ttccgaaact gtattggtaa gcgatgattc cttgctttct aattgagttt
     5761 caagagctgt agcgtcagtc tcctcagcca ttgcggtttc catattcatc cctgtaccaa
     5821 tccatagaaa agcaattgcc accgaaacta aacccatctt actttttctc aacgaaaaaa
     5881 tcttgctatt catcttttct ccttatatct gtattaataa ttaacgacac atattgtcct
     5941 agttttatta taaaaaaaac atctcataga acattgtttt tcattagttt tttatctgtt
     6001 ttacagttgc ctgtaatata tagtatgcta catttcgcaa aaactttgct ggttctcatc
     6061 gtcatttagt ttttctttta ttacttctgt aatcaatttg aattgacaga acgattagaa
     6121 gcactttact tgtaaacaaa atttctaaat tatggcacat tcaaagtaaa aaactagcgc
     6181 ctgaagtttt ctatgataca gatacttgtt tatctcggag tgctccttta attcgtcaac
     6241 ttatactcaa tgaaaatcaa aatcaaacta ggcgacgcag atacagatag aactgaagtt
     6301 catcaaatca agttaacaac gtctgatttt cgaagagtat taaataagag tgggtttatt
     6361 tgtcatgatg ccacttgttt attttgttaa ctatcacttc ataaaacatg attgtcctca
     6421 taataaaaag cacccgaagg tgctagataa ggccttccta ccgacttcac gttcgaggtc
     6481 ggtagaaaac ttcattaggc gttgaaagca tctgtcaatt gtggcaccac ttgtttctta
     6541 cgggaaacgg cacctgcaag gaaagcgtgg ttgttttcca acttgaagtt gaaggccgct
     6601 tccaccttgt ccatgttgct tcctagggca aggatttcag agtttgagtt gacgatgtcc
     6661 gtaatcatga ggacaaagtc agagtagcca tttgctgcgg aagctgctgt catagtggct
     6721 tcaatctctg cttggcgttc caaaacttcc gcaatatcaa cagtgttgac ctgagctaca
     6781 cggacgtcat tgccattcaa accaaatgtt ttggcatcaa tgtcaatcaa ttcttctgct
     6841 gacttgctgg caaggtttgt accagctttc aagagtgtca aaccgtattc ttccaagttc
     6901 acaccagcaa tttcagccaa ttcagctgct acttgtggat ctgttgtatg agtggttggc
     6961 gatttgagca agagagtatc tgaaatcaaa cctgatagga gaagtccagc tacttctttt
     7021 ggaggtgtta ctccgttttc tttaaaggcc cggtaaacga ttgatgatgc tgaacctact
     7081 ggttccaaac gcatgtacaa tggatttgcc gtttcaaagt ttgcgacacg gtggtggtca
     7141 ataacagctg ccacttccac ttccttgatg tctgcgattg attgttggaa ttcattgtgg
     7201 tctgtcaaga tgacttggct aacgccttct gcttttgcag actcaaccac gcgcggtgca
     7261 gtaacaccaa aatagtcaag cgcaaacgct gtttcttcat ttggcgttcc aagtgcaact
     7321 gcttccgcat cacgaccaaa cacttcacgc tccaagtgag cccagccgta cgatgatgca
     7381 atggcatctg tatcaggatt ttggtgacca aaaactaaaa atttagacat gtctacaacc
     7441 tcatttttct aataatctcc tacattttac cataaataga aagacttgtg aacatggacg
     7501 ggtcgggatt tgccaaacgt tttcaaaaag agtaagatag aaggtagcaa tacaaaagga
     7561 gaaacatatg aaattttcag actataccta tgtccgtcca gattatgaaa ctatcaaggc
     7621 tcaattttct gacctgacag accagttggc tcaggcaagt gacttggaaa caactcgcac
     7681 acttgtggca gccgttacca aattgctcaa cttggttgat acccagtaca acctctggat
     7741 gatccgtcat actatcgaca tgaacgatga gttctacaat gaagaaacca agttttggaa
     7801 tgaatattcg ccactttttg aagaattgac caccaactac taccgtgtca ttgtccagac
     7861 accttacaag gctgagcttg cagacatttt accagaaacc ttcttcatgc aggctgagaa
     7921 caagctcaag accttctcat ctgatgttat ccccttgttc caaaaggaaa atgaattgac
     7981 cgatgagtac agcaaactga ttgctggagc agagattgat ttccaaggtc agacctacaa
     8041 cctggcacaa atgggaccat tcggtcaatc aactgaccgc gaggtccgca aggctgcttc
     8101 tgctgccaca actgccttct ttgaaagcaa ggaagctgac tttgaccgtg tttacgatga
     8161 attagtcaag gtccgcacgg aaatcgccca caaactcggc ttcaaggact atgtagaata
     8221 cggctacctc aagatgaacc gtttcgacta caatcgcgac atggtcaagg tgtaccgtga
     8281 ggaaatcctc aagcatatcg taccgattgt gcaaaatctg cgtcaacgcc aagccaaacg
     8341 cttgcaagta ccaagcctca aacactacga cctcaacctt gagttcttgg acggaaacgc
     8401 agttcctcaa ggtgaccctg actttatcgt cagccaagcc aaagacatgt accgcgaatt
     8461 gtccgcagaa acaggcgagt tcttcgactt catgattgag catgaactct tggatttggt
     8521 tgcaaaacca ggcaaaaaca gcggtggcta ctgtacctat atccctgact tcaagagccc
     8581 attcatcttc tccaacttca acggaaccag cggagatatt gatgttttga cccacgaagc
     8641 aggtcacgcc ttccaagtct atcgttcgcg ttggattcaa agtccagaag ttgtctggcc
     8701 aacctatgaa acctgtgaaa tccactctat gtctatggaa tttatgacct ggccatggat
     8761 ggaccgtttc ttcaaggaac aggtggataa gtacaagttt acccacttgg caagtgccct
     8821 tctcttcttg ccttacggtg tcttggtgga tcacttccag cacgaagtct atgaacatcc
     8881 agagatgaca ccagctgaac gcaaggcgac ttggaaaaaa ctccaagacc tctacttgcc
     8941 agaccgtgat tattctgagt cagaagccct caaccgcggc atcttctggt atcgtcaagg
     9001 tcatatcttt gctagtccat tctactacat cgactatacc ttggctcaag tttgtgccct
     9061 tcaattctgg aaacgtacac aggtagatca cgatgaaaat gcttgggaag actatatccg
     9121 catctgtgat ttgggcggca ccaagtcctt cttgcaagtg gttgaagccg caaacctcca
     9181 atcaccgttc aaagaaggtg cccttgaaag cacagccaag gctgctgccg attggttaaa
     9241 tgcagttaag gatagcgact tataaaacac aaaaatctga atgaatcaaa tgactcattc
     9301 agattttttg attatatgat acttgtccct aacacattaa atctttttcg cagcaatctc
     9361 agacctctca ctattatccc ttaattctat tcaagtactc ctgataggtc tctgtctcca
     9421 tcaaggcctt tgcattttcc actcgagcct tcgttggggg cttggtcccc tctagtggat
     9481 agggtctgcc caactcacgc cacttaaatt caccaagatt gtgataaggt aacacctcaa
     9541 aacgttcgac attttttaat gttttaacaa acttaccaag ttcaatcaag tcctcatctc
     9601 ggtcagtcaa attcggcacc aggacatgac gaatccaaac aggcttacca atgtctgata
     9661 gatattgagc acattctaaa atagtcttgt tactatgacc tgtcacaatg cggtgttgct
     9721 caggattcat ttccttaata tcaaggagca ccaaatctgt tacttccata agccgactat
     9781 atttttccaa gtaacgctct gtcttacgga aagtcaacgc acaggtatcc aaagtagtgt
     9841 gaatcccttt ttcttttgca agggtaaaca gagcaattaa aaaatcaatc tggatggttg
     9901 cttcaccacc tgaaacggta ataccccctt cttttcccca aaacatacga aaacgcagag
     9961 cttcattcaa gacatcttct gccgttctct cagtcgctgc tggattgacc agatcccaag
    10021 tatctgggtt atggcaatac tggcaacgca tgtgacagcc ctgcataaaa actacaaaac
    10081 gtacccctgg gccatcaacc gaaccaaaac tctctgttga atgaaccaaa cctgtcactt
    10141 tacgataatc aatttctgtc atcatctcat cctcatcatt ttataagact agtatatcac
    10201 aaaaatgaaa acgcttctat catttacttt ctttctttca taaccatcat cttccgcaag
    10261 aaaaaagcta aaagactagg ttgccctagt ccttatcggt ttcttctttc tccagtggtg
    10321 taatcaagag ttttaatttt gttacgcgac cattttttac cttatcgtta ataagaacta
    10381 ggtggtgatc tttactatct acttcaaagg aaactttctc gtcttggctc ggaatggtac
    10441 cgactcctgt cagataataa ccagcaatcg tatcaacgtt atcactttcc aactccatct
    10501 caaaatgctc attgaagtca ttcaaggtca tatttccttg gacgatatag gtgttgtcag
    10561 caatttctcg aacaaaaatt tctgtcttat cggtctcatc atcgatttcc ccaacaattt
    10621 cttccagcaa atcttccaag gtaacgagac ctgcaactcc accatactca tctaacaaga
    10681 tggccatttg attttgggta tttctcaatg atgtcaacaa atcatccacg aaaatcgttt
    10741 ctggaacgaa gagaggctcc tgcataatgc ggcggatgtt gagattgtca aagccattac
    10801 tgaaagcttc tgacaagatt ttcttggtat gaatcagacc aatgatattg tccttatcgc
    10861 catcataaac agggatacgt gaaaaattct gcttgaggat agctgccatg atggttgctg
    10921 tatcatcctc aatatccacc atgaaagcat ccgtacgggg aaccattact tcacgtgcca
    10981 tcagctcatc taaagagaac acaccttgaa gcatttcgat ttcttcggca tctaaggttt
    11041 tctcactctt tgtcaaaata tattcaattt catcccgtgt catttgctca tccgcatcat
    11101 caaaattcat aggagtaata cggctgataa gattcgttgc agctgataat aaccacacga
    11161 acggactaac aatttttcca aggaaaataa tcactggtgc agtgactact gccagatttt
    11221 ccttcatatt catggcaatc cgcttagggt acaattcgcc aagaacgatt gaaacgaagg
    11281 tcaacatagc tagtgcaagc cagtatcctg cggtttgcgc tgttgttgaa ttccccatcc
    11341 atttggcaaa tacagctccc aaatcattag ccaagctggc acctgaaagg atggagatga
    11401 aggtaatacc gacctgaatg gttgatagaa aattgttagg attctctaaa acttgaagca
    11461 agcgaatata tttcctctca ccgtctgcag ccttttgttc tactcgagaa cgattgaggg
    11521 atacaagggc catttctgag gctgaaaaga aggcattgaa cagagtcaat aagaataaaa
    11581 ttaacagttg taaatagatg gtctgactac cagggtcttc catgatgttc tcctataata
    11641 aaatttataa catttccatt ataccacaaa ttctaaaatt taacatattt cttgctataa
    11701 ttagtccctc atgtctgttt atgttacaat aatcaaaagg aataggagag caactatgat
    11761 tatttcgatg aagaatgtcc actataaacg acaaggtaaa actatgttag aagacatcaa
    11821 ctgggaattt aaaaaaggcg agcgttgggc tattttagga ctcaacgggg ctggaaagtc
    11881 aactctactt cgcattttaa tggctgaatt ttggaagacc tctggtgacc tgactgttct
    11941 tggagtggag tttggtaagg gagatattcc cagcctacgc accaagattg gggtagttgg
    12001 ctcctttttg gcagagcgtt ttccaatcga tttgacggct gagcagattg tcttgacagg
    12061 aaaatataaa tcctccatcc tctatcgtga atacggtcaa gctgaattgg atgaagccat
    12121 agacatgctc aaaaccatta aggctgagca cttgatcggt cgggcctatg ctagtttgtc
    12181 acaaggagaa cgccaactcc tgctgattgc ccgaagtttg atggaagagc cggctatttt
    12241 gattttagac gaagcaactg tcggtttgga cctcctagct cgcgagcgcc tgctccacca
    12301 cattgactac ctctgtcaac tcccaacggc tcctgccatt atctacgtca cccatcacgc
    12361 cgaggaaatc actgataatt tcacccatgt cctcctgctc aaagatggca tggtcttggc
    12421 acagggaccc aaagaagata tcctgacacc tgaactcctc agcgattttt atggaaatca
    12481 ggtggaattg attgacttgg gtgagggaag attgttcatt aagccgatat tataaaaaac
    12541 aaatccagct ctagttcgag ctggatttta atcgttccac catgaccaaa aatggtgggg
    12601 tattaacttg gttgagcggt ttgtagagca tggctgtaaa gacggtttgg tcaagctggc
    12661 tgataaagtc taaaactgca tccttctcaa gagctccacc ctcgtgacca tagtaaatca
    12721 tgatagccaa gcgacctcca accaccaatc tattcaggac tttctcaatg gcttgaaggg
    12781 tggttgcagg cagggtaatg actgacttgt ccgccgaagg tagatagccc agattgaaaa
    12841 tcgctgcctt gcattcatcc acatactggt ctaaattttc gtgtcctgtc aaaaccaatt
    12901 gggcattggt taagccagct ttttctagtt tttcagccgt tgtggtcagg gcttgttcct
    12961 gaatatcaaa ggccacaact tttcctgctc gttgggctaa aaatagcgtg tcatggccat
    13021 ttcccatagt cgcatcgacc gctaggtcct ggtcagttaa aatctcatct aaaaaggcat
    13081 gggccatgtg taaaggtcta agcatacttt ctcctaatta ctgtactttc tactattttg
    13141 taaaatttat cacacctagt atagcatact ttccatcttc aaaaaatttt ttaaaatcta
    13201 ctcatattcc tccatccatt tacgaataaa taggtatgaa gacaattatc ctatttttcc
    13261 ttggagcttc tatcggctcc ttcttgggat tggtcatcga ccgtttccct gaacagtcca
    13321 ttatcgcccc ctctagtcac tgcaatgcct gcaaacgacg gctcaaggca tgggacttaa
    13381 ttccagtcct atcccagctt tcgacaaaat ccaaatgccg ttactgcaag gcgaagatac
    13441 cttattggta tctgggacta gaattcttag ctggtctagt tgtcctgctc tgccattttc
    13501 aagtcctaaa cctaaccgaa accattctca tcttggcagg actagttttg accatttacg
    13561 acatcaaaca tcaggaatat ccttttgctg tctggctcat ttttactttt attgctctga
    13621 tactctccca gctcaactgg ctcttctgtg gctttttact cttggcctat ctgactgaaa
    13681 aatggcaaat caatattggt tctggtgact ttctctatct ggcaagtttg gccttaatat
    13741 gtggatttac agaactcctc tggattatcc agattagttc cctcctaggg cttcttgtct
    13801 tcgccatttt caaacccaag tctattccct acgtaccact cctttttctt tcaagtattc
    13861 ctatcattct gtgcatctaa atcgagtttt tctcgatttt tttgttataa tagaaggcat
    13921 attagagttc aactccatca aaataattgg agtgccttct tgatcggaag gcaaaaggag
    13981 aaacgttatg acactattta aggatgacag tttaaccctg cataccgacc tttatcaaat
    14041 caacatgatg caggtctatt ttgaccaaaa catccacaat aaacacgctg tattcgaagt
    14101 ctatttccgt tcacaacctt ttaaaaatgg ctacgctgta tttgccggtt tggaacgcgt
    14161 tgtaaactac ctcaacaatc tcagctttag ccagacagac attgactatc tgacagaact
    14221 aggttatccg caggatttcc ttgattactt gtcccaattg gaaatgactc tcactgtccg
    14281 ttcggctaag gagggcgacc tagtctacgc taacgaacct attcttcaaa tcgaaggacc
    14341 attggcacaa tgccaactaa tcgaaactgc cctcttaaac atcgtcaact accaaaccct
    14401 gattgccaca aaagctcgcc gtatcaaggc tgtcattgaa gatgagccct tgatggaatt
    14461 tggcactcgc cgtgcccaag aaatggatgc tgctatctgg gggactcgag cagcctttat
    14521 tggtggagca tctgcgactt ccaatgttcg agctggcaaa atcttcggca tccctgtcgc
    14581 tggtacccat gcccacgcct tggttcaaac atacggagat gattacaagg ctttcaaagc
    14641 ctacgctgaa acccatcata actgtgtctt cctcgttgat acctatgata cgcttcgtat
    14701 tggtgttcca gcagccatca aggttgccaa agaaatggga gataagatta acttcaaagg
    14761 ggttcggatt gattcaggcg atatggccta tatttccaag aaagttcgtc agcaattaga
    14821 tgatgcaggt tttacagatg cgaagattta cgcatctaat gacctggatg aaaataccat
    14881 cctcaacctc aaaatgcaaa aggcaaaaat tgatgtctgg ggagttggta ccaaactcat
    14941 caccgcctac gaccaaccag ctctgggcgc tgtctacaag attgtatcca tcgaagatga
    15001 agatggaaat atgcgtgaca ccatcaagct gtcttctaat gcggaaaaag tctccactcc
    15061 tggtaagaaa caggtttggc gcatcacctc caaagaaaaa ggaaaatcag aaggggacta
    15121 catcaccttt gcggacactg acgtcacaca gatggataat atctatatgt tccatccaac
    15181 ttacacctat atcaataaaa ccatcgagaa ctttgatgcc cgtcctctcc tagttcctat
    15241 tttcgaaaaa ggaaaacagg tctatgaact tccaagccta gcggaaattc aaacctatgc
    15301 caatcaagaa tttgataaac tctgggatga atacaaacgc gtgctcaacc cacagctcta
    15361 tccagtcgac ttggcacaag atgtttggga taataagatg aacctcatca atcgtattcg
    15421 caaacaaact cagaccaaat ccatctaaga aaggtatgtt atgaccctac aggaaacaat
    15481 catcaaagaa ttaggcgtca agccaagcat tgaccccaaa gaagaaatcc gtcgctccat
    15541 cgactttctc aaagactatc tgaaaaaaca cccatttttg aaaacctacg tcttggggat
    15601 ttctggtgga caagattcga ccttggctgg tcgtttggcc cagctgacta tggaagaaat
    15661 gcgggcggaa acaggtgacg attcttatca atttatcgct atccgcctgc cttacggtgt
    15721 gcaagctgat gagtctgacg cccaagcagc cctagccttt attcaaccag atgtcagctt
    15781 aaccatcaac atcaaggaat caacagatgc catggtggct gcagtcaatg caaatgggct
    15841 tgctatgtct gattttaata agggaaatgc taaagcccgc atgcgcatga ttgcccaata
    15901 cgctatcgct ggagaacgca agggggctgt tattggaacc gatcatgccg ctgaaaatat
    15961 cactggtttc tttaccaagc acggtgatgg aggtgcagat atcctgcccc tcttccgtct
    16021 taacaagcgt caaggtaagc aacttctagc tgctttggga gcagatgaaa aactctacct
    16081 caaagttcct actgcagact tggaagaaga caaaccaggc cttgctgacg aagtcgcact
    16141 tggtgttacc tataaccaaa tcgacgacta tctcgaaggt aaaaccatcg accctcaatc
    16201 ccaaaccatt atcgaaggat ggtggaacaa aacagcccat aaacgccacc tgccaattac
    16261 tatttttgat gatttttgga aataatactc ctcgaaaatc aaaatcagac gttattgact
    16321 tgatttgatg actgaaaagc tcctgtggag gttttcagcc tgttcccttg aaatataaaa
    16381 ggaacagagt tctaacatca acttgaaggc gcaaacaatg ttcgctatat ttccaacctt
    16441 caactatctc ccagatagtt gaagctaggc tacttttgat tttcatcgaa taataaaaaa
    16501 tggagccctg acagttgaac cgtcaggggt tttgtttttt attataactt caaaccataa
    16561 tgaaaaaagc ccacgcagga aaaaatatcc tgcgtgggcg tcaatggaca cggtgccacc
    16621 tcactatgga ctcgactaga aaagtccata actttttctc ctctaacaag gaggcgcacg
    16681 ataaggggtg cggaccgaac tctcattgtt tcgaattcat cgaaccaaac tcactttact
    16741 aaaccagaca atccataaaa tggatacgaa tgcttgtttg gcatcagcct atctcataaa
    16801 cctctatcat ctattcacac caaccataga ctctctaaag acaaagtgtt tattacattt
    16861 tctgattact tgtaattata cgttacaaaa tcaaaatggt caagtgattt ttagaaattt
    16921 tctaaacaat ttgaaaattc agtttccatt gcctgaatcc attaaaaact aacaaaaagc
    16981 cactctgctt aagtgacttt ctaaaaaact gtattcacga gcgaagcact catatcaaag
    17041 atagctttag ctagtcaagg tcatttttaa gggaatactg actgtatttc aaaaaaataa
    17101 caatgtgtag cataaacaat agccttagat ggacattctg aacctgtgac ggtaggttct
    17161 aagactcctg tttggaaagg attatccctc tcattatcaa tgaataggta aaataggcta
    17221 gtattccccc cattgtattg gtccataaat catcgatttc aaagacgcgt tgggcatcaa
    17281 tcagcaaatc tagtagtaat tgtgtgcatt caataaaaag actgatacaa aaactataac
    17341 gaatcaccgc tcgaaggctc cgccattctt ccctaagaaa caaaagaaga aaaatcagag
    17401 ggaaaagtag aaaaatatta gtgatgtttt gcaagaaaat ccaccctagg tccgccaaac
    17461 tatctacctt gtccccgttg acgatgctgt tgaaaggagt tggtaaaaga tagagacggc
    17521 caatttgaat aattcccggg gtcgagaaat ccttatactg tgggtaccaa gtctgaggta
    17581 gaaaacaaag taaaacaata gccagagcat aggctccagc taaggtctta caaatctgtc
    17641 ttcctagcat ggtcaagttt ccatctgctt ggaagaattt tctcatgctc gaatacctgc
    17701 ctttgctttt gcggctgcaa tacgagcacg agctttttca cggtctttct tgagcgtatt
    17761 ggaacgcaat tgaccacagg cagcatcaat atctgtacca tgttcctgac gaacgacaca
    17821 gttaacacca tttttcttca aaacatcaaa gaaagcaaga gtacgttcct tggttgaacg
    17881 actgtactgg tcatgttcac taactgggtt ataaggaatc aagttgatat aagacaattt
    17941 acgaatgttc ttggtcaaat cagctagttc ctgcgcctgt tccactccat cgttgacctc
    18001 attgagcata atatactcaa aagtcacacg gcggttggtc actttgatat agtcttcgat
    18061 tgcttcaaaa agaacttcta tagggaattt gcggttaatg cgcataatgc tcgaacgaag
    18121 gtcattattt ggcgcatgta gagatactgc caagttaact tggacacctt cacatgcaaa
    18181 ctcacgaatt ttcggtgcta aacctgacgt agaaacagtg atgtgacggg caccaattgc
    18241 caagcccttg tcgtcattaa ccactcgcaa gaaggtcata acattatcgt agttatcaag
    18301 cggctcacca atccccatca caacgatatg gctaacacgc tcattctgat tgcgctcatc
    18361 caagtacttt tgtaccaaca taatctgagc cacaatctca ccgctagtca agtcacgttg
    18421 cttaggaatc aatccagatg cacagaatgt acagccgata ttacagccaa cttgtgtcgt
    18481 tacacagact gaaaggccat agtgctggtg catgagaact gtttcaatca acatgccatc
    18541 tggcagttca aaaaggtatt tgatagtacc gtccttagac tcctgtacaa tccgttgttt
    18601 gagcggatta actacaaaat gttcttccaa cttttcaatc aaagattttg gcaagttggt
    18661 catttccgca aaagattgga cacgagaacg gtaaagccat tcccaaattt gagtggcacg
    18721 gaacttcttc tctccgtttt ctaaaatcca atcaaccaga ttggcttgac taaatgcata
    18781 aattgatggt ttcatatttc tccctatttc tggcggataa caaagttacg cttcacttca
    18841 ttcatctcac gcttactctg cttacgctca tgtttttgag aacgctccgt ttgactcgcc
    18901 ttaacaccag cattcttcat agtaaaatga cgctgttccg actgtttatt ttgctgcttc
    18961 ccttttttct gacggtcatt gcgattactt ttgttttctt ttggctcaat aagctccgtc
    19021 cgttgctgat ttctgttccg attgcgagaa cgactccgct tccgacgcgg tctatcctcc
    19081 tcctcagcag gcaagtcttg tggattcgga ttggctaaga cgaaataagc acaaccaaaa
    19141 ttacaatact ccgtcaaata gtcgtccaag cggctgattt ttaagtctga tttaacattt
    19201 ttatcgtctg tatagaatcc ccttaatctc agctgctcat tgccccaatc tcccacgata
    19261 taatcaaatt tgagcatgag ttgtgaaaaa cgttgaccaa aaatcgtctg gtcaaaagca
    19321 ttcttgtaat cttccaaaag gtccaattca atattttcag atacaacctt atctccgaca
    19381 cgagcaaaac tcggaccagg gtatttatta tagttataca tttcaggtga aatttctttt
    19441 ttcatttgtc ctcctatctt ataaaatctt catacgtaaa aatcatttga ttaataatct
    19501 atctggtcag aatctaaatt ctcacactta accttatcat tataacacga tttatctgga
    19561 aattcttcta ctttaccatt taggagaaat ttctgacaat tataatatta ttctctagca
    19621 aaaaaggacg atttactcgc ccttcgtttt cttcaaataa tcaatagcct cttgaacagt
    19681 tttcacagga actacctcaa tatctagacc tgctttctcg gctgcttcct tagcttcttc
    19741 atagttcgtt ttagcctttg ggtttttctt caaaacttct acatcaactg gattgtttgg
    19801 tacaaaaaaa atacttgcac ctgacttagc tgccgaaata accttcttat cagccccacc
    19861 aatgtcacct acttttccat cctgctcgat agtccccgta ccagcaataa ttcgaccatc
    19921 acgtaagtca ggctctgcga gttgagtata gatggcaagt gtaaacatca gaccagcact
    19981 tggaccacca atatctcccg tttggaaatc aattggaacc gaactttgaa cctctgtatg
    20041 gtctacgaga gtgatgccta ttccgttttt gccattagat aatttgataa tcttaccgtc
    20101 cgcagatttt tcctgaccag cgctaatata accaactgtt acatcacttc caacctccaa
    20161 gccactcaca tatttaatca aatcaggaga agactcaaat gtttttccat tgatactcac
    20221 aacagtgtcg gcaatattaa gaactttttt aaaggttgaa tcatccgtca aggcaagcac
    20281 atagacacca aagaaatcaa gattgacttc ttttcctgcc aaggtcaatc cttgatactt
    20341 cgccatattt tgcgaagttt ccatgtaaaa ccgtgctata cggaaatact cctcattgtc
    20401 ggcccctcct gtcatctctt cagaggaacg aactgtcgta tagggatcaa actgagcagc
    20461 gaatagttgt aaagctgtag cttgttggac tgatacatag gtgaagttgt aagagccatc
    20521 ctcttggtct atttgattgt tcaccgttag tacctgacga atatcggcag ctccacctgg
    20581 actttccaga taataaggca gacgaacaaa aacggcaaac caaatcaaaa gagttcctaa
    20641 aacaatagat gcaattaagg ttaacttcct atttttcttc attctttcta atctcctcac
    20701 taacaatttc tggaacataa ggacctatgt cctgtttgaa atacagcaat tctcgaacct
    20761 ggctggatga tacgaactta agctctggct tggcgattaa ataaatagtt tccaaatctg
    20821 gcgccaactg acgattgtaa aaatcaaaac ttgactcgta ttccaaatcg gtcgcattac
    20881 gcaatcctcg gaccaaatgt gttactccat agcgcttagc tacatcgact accaattcat
    20941 tttcagacag aacgacctcg atattctcca ttcctacaaa aagcttctcc aaaatggctt
    21001 ttctctccaa acctgtcaag agtcctgcct ttttaggatt ggtaaaaact cccacatata
    21061 atttatcaaa tagtccactc gctcgttcaa ttaagtccaa gtgtccattg gtaatggggt
    21121 caaatgagcc cgtaaacaat ccaatcttat ctgacatata ctgttacctt actaattccg
    21181 tagagtttct ctttccatat ccccagctct gctatttcct ccggaagaga gaccgcctta
    21241 tccgtttcgc agactaccat aacatcatct gctagtaagt cacgccgaca aagttctgtt
    21301 atcacatctt caatttcctg ctctgcataa ggagggtcca agaataccag gtcgaaagga
    21361 cctcccacac tgttcaaagc ctgtctagct tccattgcta gaagctgaaa tttatctgct
    21421 tccttagtca ttgcaatatt ttcacggata atggcttgtg ctcgtcgatc tcgctcaacc
    21481 agaactgctg actccatgcc acgagatata gcctcgatag ataaaccacc actgccggcg
    21541 tacaagtcaa gaactctacc accctcaaaa tagggaccaa tcatattgaa catggctcca
    21601 cggaccttat ccgatgtcgg tctggttgtt tttccatcta acgttttcag tggtcttcca
    21661 ccatagcttc ccgatacaat tctcataagg tatattatag caaaaaatga agctcgttgc
    21721 tgaaaccaag tgcacttcct gctttccttt ttgcaccaac tttttcatcc tcctatcaaa
    21781 tacactctca accgctatag caggaaatca ttctcacatt attcaataaa atgataaaaa
    21841 taaaaagcaa ggaaattctg ttttacgcga aattcctcac tcttatcgta tgtatttaaa
    21901 ctagatcgtt acaagaaaaa attgatgttg aaatacaaat agctattttt tccagtatgc
    21961 taatacaccc cgtagctaaa aagcctacgg attatccggc gaactctcgt cagctgttgg
    22021 aactgtttcc actgactcaa ccaggctagt tgttgaatcc gtcgtttccg ccggggtttc
    22081 agaaactgtt ggagtttcta ccacaggtgc tccttcacta gtcggaggga ctgaagcact
    22141 tgtactagtt gacgccacgc tgcttgtata ctggcttgtt gaactcacac tttgatttcc
    22201 atatatattt tgattaggca ctacatagga ttcttgtgag gtctcactag cttcagcaag
    22261 gtccgttgac tgactagtcc ctgtttcaga tacttttttc tcatcagcta ctttttgggc
    22321 tgcttccgcc ctgaccaact ccgcttttag cttagcctgt gtttgagcat ctgtctgctg
    22381 tcccactagc tcttttactt ggtcaatccg tttctgtaat gctgcttttt tagtcgcatc
    22441 cgtaaccttg tttactgcag attgtgcctc tgcaagtttc tcttcagtat gtgttccttc
    22501 taatacaatg acagcattct cagcatcctg aaataatgta tcaaccgttt ttttctgatt
    22561 gggcacttgc tgtactgtct ttgtatcact tgtttcgctt tgagcatttt tataccagct
    22621 agcgcctaag ctaatcaata aaataagtcc cataaaagaa ataatgccaa tttctgccaa
    22681 tgacaacttt tcaaatttct tttccatatt ttttccctta tccgtctcat tgcataagaa
    22741 aatactctag cctactgaca atgctactta gttgttttta ccttaccatt ccatccgttt
    22801 agaccatagc ttaaaatata gatttcgtta aagccctgtt tcttcagatg aagagctgca
    22861 ggcgttacca actgaccacg atcattctca tagattaaga caggtctgtc cttacgcaaa
    22921 gcagctgtag actggcgcaa ttgctggtaa ggaatatttc tcgcacctaa gatatgctta
    22981 cgattaaact cactcgggtc tcgcaggtca atcaactgac ctccgtgtat cttttctgca
    23041 aattctgcat tatcaatcac agtcgctgca cgacgcaatc tccagtaatt aaaacccatc
    23101 caggctccca atactgccaa aaatactaaa aatacccaaa atgtttccat cactcattct
    23161 cccttgattt ctgatactct aattccaaac gatgttcacg cctcaaaaca agctctgctt
    23221 ccatatattc caaccgatct aagacacctg cctgatagat tctatttaat tctatctgca
    23281 tcatttcaat atcgtagaga cggttgccca tatagacaat tataccaaac cgtttgagta
    23341 attgttgcac atcataaagt cttttcataa aaaaattgta gcagaatttt aggtgttttt
    23401 caatataata ctcaatgaaa atcaaaaaca gactagctcc aaaggtttgg ggaacctttg
    23461 gaggttggag atagagcgaa cgtagttcgt tactacttac gcagatagaa ccctgttact
    23521 attttgtttc aaggtaacag gctccactgg agcctttcac tcatcaaatc aagtcaacaa
    23581 cgtctgattt tgattttcga agagtataaa aactcagtca aaaatcaggt ctataaaaag
    23641 attggacaaa tgcccaatct cattcgttta tactaaccaa cccttttcct gcgcaattct
    23701 gacagcagcc gtacgatttt cagctcctaa tttggacagg attgaggtca tatagttgcg
    23761 gactgtcccg tcagacaggt ggagctggca ggcgatttcc ttattggaca gcccctctgc
    23821 caccagcttg agcagctgac tttccaagtt ggttaaggga ctgcgttggg ttaggagaat
    23881 gtccatcaac tctggtgaat attcctttcg ccccgccaag accgtttcaa tggtccgcat
    23941 gaggtctgct atggagcgtt ccttgagcac ataggcatcc acatctgcct tgaccgcccg
    24001 ctcgaaatag cccggtcgct tgaaggtggt catgatgacg accttgacag gcaaggcttg
    24061 cccccgcacc cattccaaga catccaggcc cgtcttttca ggcatttcta tatctagtag
    24121 caccacatct actggctctt tttccaaaag agcaatggcc tgactgccgt tttctgcctg
    24181 taaaacagcc tcaaccgcat cttgaaagcc caagagttga cagagggcgt cccgcagcat
    24241 tgcttgatct tctgcgacta agattctcat tctaccacct cctcaaacgg aattcggatg
    24301 gacaggcggg tgggcttggc tagagagata aattccaaac ttcctttcac cgttaccaac
    24361 ctgtccttta tagtatgtaa ttcctgacca gtcaactggg caaagcccac accgttgtct
    24421 tcgtagtata caaccaattc ttgctggtct ttttcaaaaa ccaaacggca cttgctagcc
    24481 tggctgtgct tgagcaggtt attggccaac tctctcagca ccatagccag cttgttctgg
    24541 acgggcaagc tgagctgctc tgctatttcc ccgcccaaga caactaagtc cactcctgcc
    24601 aggtccaaca tctgctgtaa aatctggagt tcctctgcca cggtgtgctg cttgagggac
    24661 tggacaatct ggcggacctc ctgcatggag tccttggcca aggtctgaag gtctgccacc
    24721 tccttcttgg cctggtcaat ctgatcatgg tctaaaagtg tctggaccag ctcggccttg
    24781 acagacagca tggcaaagac atggcccagt gtatcgtgca agtcctgacc gatacggttg
    24841 cgttcattct cagccagaag gagattgatt gaagcattct gctcctgtag gcgttgctga
    24901 agggctgccc gtttggtctc aatccagctg aaaatcagca aggccaagcc gaaaaagtgg
    24961 ataacaagtg caaaggctct catctcaaaa ggaacagggc caaagagagc ccataggata
    25021 atagccagca acaaaagccc gtaggacacc gtccgatagg tcggtcgatt ctctttataa
    25081 taccagccca acatattgga caggttaaag atgaagaggg aaaattgcag attgccccaa
    25141 aaactcatga cggcgatata gccaatcagg taaaaccaag ccagcatgga atagagcttg
    25201 tggtcggtat aaaagaggga gcaataaacc aaggcaaaga gaatagtcgc taggacaact
    25261 gccgtcggat tgggagtata ctgggcgtaa taaagtggaa aatagagaaa gatcatgccc
    25321 acgaagaaca tgagcggtac ctttcttttt tcaaaaatca tagttcacct cactgttgct
    25381 cagtttttct attcataact agagcaattc ctaagaaaat tatggcatat cctaggacaa
    25441 ttagcaagga tttccagaga aaatctccct cttgagcata ggtggtcacc agctggttga
    25501 catggtagct cggcatgagt ttgcagatcc gctgtaccca gtcaggaaag agggaaacag
    25561 gcatccaaga gccacccatg atggccagaa caaaataaag caagttggcc accaccgaca
    25621 tggtttgttc cgactgaatt tgcaccaaaa gcaagccaat agctagaaat acgatagagg
    25681 ttactaaaag taagagagcc gaaattaccc attcttgagc tgtcatctct acacccttaa
    25741 ctaaaccacc caccgcaaaa acaacggcaa tagaagacac aaagcagagc aagacccgca
    25801 cgagtttgga aagatagtat tgccagattg gcagaggcga atgctggata aaggtcaacc
    25861 aactattgtt tctatcctct gccagcatca tgggaaaggt gaaaagggca aagcccgaca
    25921 tggaaaagcc tgtcatggtc agcatgtagg actggataaa ggccttttgc atggtcgcat
    25981 catcaaactg gaccgtcgat gagaaaatca ggaaaaagat gacgggcatg ccgatagata
    26041 ggagaaaaac tcccaaactt ctagataatt tgaccgcttc tacttgcacc aatgctttca
    26101 tgattcttcc tccctcgtct tgtcaaatag gctgttgagc aaggttttgt tctgaacctc
    26161 tagatccgaa atccgacaac ctgcctcctg caagctagcc caaacctgct caatagctcg
    26221 ggtcttaaag ctaaccgtat cttgtttgta gctgatttca ttgatttcag ccaagctctc
    26281 caccaccgcc gcaaaagcaa tcggcaatgt cacttctttt tcttgctcct cactccgcat
    26341 agcaaatggc gtggtatctc ttagtagccg cccctggtgc aagaccaaaa tccgctccgc
    26401 cgtatgctcc acttcctcga tatagtggct ggtataaaaa atagtcacac ccttttcctt
    26461 caactcatgg acaatctccc aaaaacgctg gcgggtcgaa gtatccatgc ccgccgtcgg
    26521 ctcgtccaag aaaagcaact tgggcttgcc aatcagacag atgacgaaag ccaagagccg
    26581 cttctgacca cccgatagct tgccggccag ttgatttttt tgctctgggg aaaagcagag
    26641 cagactgtcg atttccacat ctgtcagact atccttgtaa atagcttgga aaaagcggag
    26701 taattccttg accttcaggt ctgtcgggat agcattttct tgaggcaaga ctgccacctt
    26761 ttccttattc gactgagcct gtggagccag accgtccaac aaaacctggc ctttcgtcgc
    26821 ctttctatca cccaacaaac aagacataag cgtcgttttt ccagccccgt ttggaccaat
    26881 caaagccaca cattctcctg acttgatttc aaaggaaata tcagacaaaa tggtccgtcc
    26941 tttgataacc ttgtctagtg ctcgtacttc tatcattttt ctacctccta cttcttgaac
    27001 atcttacata catagtataa ctagaaaagg gaagccccac tagaagcctt tgtcatggac
    27061 tcatgtgaca aatgtcatat tatactcaac gaaaatcaaa agtagcctag gaaacgaagt
    27121 cgaagataga tctggagttc atcaaggcaa gttgacaacg gataattttg atattcgaag
    27181 agtattaaat aatgcagcaa aaaaagagtc cttctggacc cttcatctat ttacaactta
    27241 ggtgcttgac caagttctgc ctgcagcatc caaatatgtt tttcaatact agccttagcc
    27301 acattgaaaa tgtcgttggt tacgctgtca ccttcttcat cactgacatc aaaccccttt
    27361 tggaaaagag cagccagata gcggaacacc tcgaccacac gcaccaattg ctcttcaatc
    27421 gttacattgt aatcaccagg aacttccttg agctgactat tttcactaaa ctctttaagg
    27481 gtagaaaatg gtgccccacc taaggtgatt aaacgctcac tcatctcatc caaataacca
    27541 tcaatttctt ccatatattc atccatcttt ggatgccaaa tcataaagcc acgaccacgc
    27601 atataccagt gaacttgatg gaggattgaa tgggctactg ataaatcggc caccgcttga
    27661 ttcaaaacag ccttagaatc agccagtgat ggacgcgggc tgaaagacgc aatttctgct
    27721 ggagattgat aatatttttg tttcatcata tatcaccctt tcttttattt ataataatta
    27781 taaataaaag aagaaaaaat tgcaagaatt atccctcatc ctcctctggc ttattgacag
    27841 acaaatccct tgctatatta acttatatac gttagactag taggtaagaa tagtatgtga
    27901 ttttcttttt agaaaatcat cgcccccata tgtgtatatc gaggagggat tttatgtcag
    27961 aagaaaaatt tgacgcaaaa ctagaacagc tatctggctc tgcaaaagag gtaattggta
    28021 agctgaccgg cgacaaggaa atcgaagttg aaggacttgt tgagaaagga attggcaaag
    28081 caaaagagct agtcgaagat gcaaaagacg ggcttgaagg tgccattaac ggcatcaaaa
    28141 aagctttcga caaagaagag aaataaacaa agagttcaat ataggtagga ttggtcgtgc
    28201 actgtttgat aatgaacatt acacttaatt tggtctttta cctatagccc gaacaaaaat
    28261 atgcaagaga ggggaactca gacatttacc tgtcgagtct gccttctctt ttcttatgcc
    28321 acgaaaggag aatctatgaa aaaaatcgtt tttgtctgtc ttggaaatat ttgtcgtagc
    28381 cctatggctg aatttgtcat gaaagacatg acaagtcaat ttcacattga aagccgtgcc
    28441 acttcaaact gggaacatgg taatcctatc tactctggaa cacagaaaat tttccaaaag
    28501 cacaagattc cctatgacaa gaccaaaacc tctcaacaaa tctctcaagc agactttgag
    28561 gaatttgatg tcatcattgg tatggacagc aataatgtcc gagatttaca gaaaatggca
    28621 ccagcacatg cccaaaataa gatttttcaa ttcgcagaaa aatccgtacc agacccttgg
    28681 tatactggag attttgacga aacctacgaa atggtaaaga aaggttgcca agactggttg
    28741 gacaggttac agtcatttga tcaagaataa gattttctat gtaatatttt tgtaatattt
    28801 gtaaaaaaat ggtaaactat ttctgactga actgataatt tcttacagta tcctagaaag
    28861 aactgattag catcggtcaa atcctatgaa agagtaaaac gatgaaagag ttcaaattac
    28921 ctagcataaa atggcatgat ataacaagtc atttcacccg tccaaaactt gaaatcctct
    28981 cccttattat catcctcatc tgtgccctct ctgtatttac agggcgaatt gccagcaagc
    29041 aagccatgac tttcaataat ggcgccctgc agtacaacgg ttatgtggtc gcaaataaaa
    29101 tgaatggtca aggaaaattg acctttgata atggagatgt ctacgagggg caatttaaaa
    29161 atggaatttt ccacggtcaa ggaacctaca catctgcaag tgggtgggtt tataccgggc
    29221 aatttaaaaa cggctacgcc gatggaaaag gaaaattgac caccgaagga caagctacct
    29281 acgaaggaac ttttaaacag gggatttatc aatatgaaaa ttaaatggtt atccgttata
    29341 cgtgtgattg gattagtctt tgtcctactc tatcatttct ttatcaaata tttcccaggt
    29401 ggctttgttg gggttgacct cttctttacc ctgtctggat atttgacaac cgcccttttg
    29461 attgatgagt ttgcaaaaca taaaaaaata gatattgtca gctttttcag aagaaggttc
    29521 tatcggattc tcccccctct ggttttaacg attcttttgg tccttccact tgctctgctt
    29581 gtccgcaatg atttcattgc caatatcggc aatcagatag ccgctgcgct cggattcatg
    29641 acaaacttct ttgaaattct atcaggtggt agttacgaaa atcaattttc acctcatcta
    29701 tttgtgcata cttggacact agccatagaa gttcagtatt accttgtctg ggctggttta
    29761 gtttggtatc tgactcgcat ctcaaaaagt gtggggcaac tacgtggatc aatttttcta
    29821 acatctataa gcctcttctc gctaagtttt ttagcaatgt ctatctcaag tttctttgtg
    29881 gataatttct caaccattta ctactcgagc ttcacacata ccttcccatt cttcctcgga
    29941 agcgttctcg caaccatcgc tggtatcgga aatacaacaa ctgccttcca gcaacaagtg
    30001 aatacattga gtatcaaaca agctataggt ctgtttcttg gaggactagg agtagaactt
    30061 cttcttctct ttactcttca attcagttcc atctggacct atctaattgg ttttcttcta
    30121 tccagtttag ctacagcaac tatgattttt gctgctcggg tacttcacga gaaaaccgaa
    30181 gatgtcaaag aacctgcaat tatcctcttc tttgcaagta tttcttatgg tatctacctc
    30241 ttccattggc ccttgctcat tatctttaca caactgacaa atgccactat cgctgcggga
    30301 ttatcctttg ttttttctac tatcctatca actatttcct tctatattct agaaccatat
    30361 attgctggta aagtaggaag cttgtttgga ttacccatag atttgaaaac atataaaaaa
    30421 tggcttcttg gtagctttgc ttgcttgacc atagttggct taggtatctg tctgtttgca
    30481 ccaaaattag gaagttttga acaagagagc atggttagca atctttatca agctcagacc
    30541 caactaaata caacacgatc tgctgctgaa aacgctaaag ctactagttt tgaaattcaa
    30601 aaaggagtta tcatctttgg cgattctgtt actgttcgcg ctagttctgc catacagacc
    30661 gcgctaccag atgcacagat cgatggaacc gtcagtcgaa atctctctga aattgctaaa
    30721 ttgataaatc tttataagca aaataatagc ttgaaagaga ctgtagttgt aaccctaggt
    30781 acaaatacta cggataatta tcaggaacta ctagaccagc tagtcaaaga ttttcctaaa
    30841 ggacgtcgcc ttatttttgt cactccttac gatggaaact tcactccgag cgaatccatt
    30901 tcctatcaaa ctggtcaata cgagaaagaa ttggctgaaa aatatgatta catttccatt
    30961 gcagactggt atcaagttgc aaaggataat ccaccaattt ggtacaatac cgaccttgtt
    31021 catttcaatc ttgaaagtaa tggaggcgaa gtcttcgccc aaacgataaa aaatgctgtt
    31081 gaagccgttg ctgatggtcc aatcaaaaac tagatttata catcattatc ctctgagaat
    31141 ttctcggagg atttttgcac tattttccta taagtccagc gcgaactcta agaaatggcg
    31201 ttgtgcctga gctcagcctc aataaatctt gtgaaataag ccacttctac aaaggacggc
    31261 aaagcgaagt aacgataata gaaagatgac aagttaaaac tcctaccttt tacagtagga
    31321 gttggtgtca aattgactat ttttgcttac tttggaaacg ccattcaaag cgtttctgat
    31381 cgtaaaatgg atacatcatt tgtaaaagag tgacggcaag tagccaacca ccgataatat
    31441 ctgtcgggta gtgaacccca atatagatac gggatacagc taccaggaca gcaagtagaa
    31501 tcaacacggc ttttagcaca agtctagcta tgcctttctt catcctctgg tgaacaataa
    31561 taacaactgc tcctacaatc atcatagttg atgcagtatg ccagctagga aatgaataac
    31621 cgatggtatc aatcaaccat tcaatacttg gacgcggacg ttggtagaca tatttcaggg
    31681 ctgtggatgc cacacccatc gccgcaaaac tagcaagtag gaaataagct tctatcttcc
    31741 attttttata gtagtaaaag atagcagcta gaatcaaggt aatagctaaa ataataaccg
    31801 tatttcctaa aacagtaata gaggtccaaa attgactggc tccacttggt aaatttccac
    31861 gaatggcaga ctggacagtc gagtcaaaac ctgctagggt actaggataa aattttacta
    31921 catagcccaa tatcacaaag gccagagcaa aaaaagatgc gtttcgtaaa tggatttgtt
    31981 tattcttcat acagtatagt ttaccttata aaggttaaac tttctttaaa ataggttgag
    32041 ctgctttgta acagatataa aatattgctg aaagcacaat cccttgtaaa agattaaaag
    32101 gaagtaccat catcaaaaga tagttagtca gccccaagat ttctttaata tcaaaatttg
    32161 caaaggctgc ataaacaggc accgcataaa cgtaatttaa taccagcatc actgctgtcg
    32221 aaccaattgt cgcaacagcg gctgctttta aataattttt taacgtttgt tcatttttcc
    32281 agaaataagc tactgctaaa atgaaaactg acatagctgc aatattcatc ggtaagccaa
    32341 taattgtcga tggtccctga ttatttaaaa tcagtttgag aaaagttcgt accaaaagga
    32401 tagcaaaact agacttcata tctagaacaa gcagaccaaa taaaatcggt acgagagaaa
    32461 aatccacttc caggaaactg gctgttggaa tcagcggaaa tttcaaatac atgagcagaa
    32521 aggatactgc tgagagaatg gcgataatcg tcattttgcg tgtgtttgtc ataaggttcc
    32581 tccaattttt gaaaattgaa gaagcgtgga agagcaggca aaaagcctcc acttcgtctt
    32641 ctcccatcca gactttactg tcggttgtgg aattgcacca catcagcttt cgctcgcaga
    32701 ctaccaacgg tctattttgt tctaatactg cgttagctca tctcgacata cattcagtat
    32761 ggtcttcgat tcgctgccta gtcttaaaac aaattaccac gttttacact gccggtcggg
    32821 aatttcaccc tgccctgaag actatttcat cataccaaaa aagccttgca tttgcaagag
    32881 cttggtaagt tttcactatt ttaacttgtc cccatcatag gtgtgaacca aatctagacc
    32941 agcgaactgt tgctgccgaa gagcttcata tacaatcata cacgctgtat tagagacatt
    33001 aagactacgc acatgttcat cattcattgg aatacggata gccttctctg gatgttcacg
    33061 cataaaatct tctggcaagc ccttatcttc acgaccaaat aagaaataat gaatgttccc
    33121 atcattatag tcttcatccg aataggtttt atcagcaaat ttagatacta agtgaacacg
    33181 tccttgtttg ctggcataat ccataaattc tgctaaattg tcatagaagc gaacatctaa
    33241 cttatcccaa taatctagtc ctgcacgttt catcttacgg tcatcaattg gaaatcccat
    33301 aggcttaatg atatggagag gactattggt tgcagcacaa gttcgagcaa tattgcctgt
    33361 attctgtgga atctgtggtt caaataagac aatgtggttt ttggctgttt cttctatata
    33421 ctctaatgtt tcaatattca taaggacccc tctggtgaca tttcactaaa cacgaatacc
    33481 cttcgaaaat caaatccaaa ccatgtcaga tgcattttac cgtataccag tacggtctgt
    33541 tgcttgttat ctagtttctt tttttgattt tcattgagta aaaagactcg actgtctcct
    33601 atggcaagaa agacaaaaaa atagccacac tgcccggagt caagctcagc aaacagcatg
    33661 gtgaatgatg attcattcac ttaactcaca acaggtttga gttaaatcaa tgaaatcgtg
    33721 atactattgt agcttaaaga aggctgaaaa tcaagagttt tgccctattt ttttcaaatt
    33781 ttcatagaaa atcatggggg ctgggcaaaa agaccaacct agcttcgcag agttcgtgtc
    33841 aacatctgag cgcagtgatt gattggcttt aacagtccag tggactgtta atattgaggc
    33901 gaacttgctt cgccctatct ccagccttca aaggctccca aaccttttga gagagtacta
    33961 aaggcaacat aaaaacctat atttatacag aataaaaagt aggttgccct acttctgctt
    34021 atttcttttc aaactaaacc tgtccggcac aggatcttcc ccaccttcca caaagggatg
    34081 acagcgacca attcgagcca accccatcaa aaagcccctg agtccatgtt tttgtaaggc
    34141 ctcgatcata taagccgaac aagttggacg gtagcgacaa gagggctgaa aaagggggga
    34201 aataaatttc tgatagaatc ggaccaagcc gattaaaagt ctagtcatta tttttttact
    34261 ggcttagtaa cagccagggt atgtagttta ctgatgtctt tcttattgag cttgcggtat
    34321 tctcctggac gtaggccggt caagtcaaga ttaccaaagc gagtacgaga cagtttatct
    34381 acctgcaagc cgacagcctc aaacatcttc ttaacctggt ggtttcgacc ttcatggatt
    34441 gttaattcta caactgatcg gttcttaaca gggtccacct tgataatctc gtacaccgca
    34501 ggcttagtct ttttgccatc aatgacaaca ccacgggtca agggacgcaa aacttccttg
    34561 ttggcaactc ctttgacacg cgccaagtaa accttatcaa tctcattacg tgggtgaatc
    34621 atttcgtctg taaaatcacc gtcattggtc aaaatcaaga ccccagatgt atcccagtcc
    34681 agacgtccaa ctggataaat ccgctcctta actgttggca acaagtccac aactgtcttt
    34741 cttcccttgt cgtctgacac actagaaata acacctcgtg gtttattgag gagatagtag
    34801 accttctctt cgttataaat tggttttccc tcaacctcta ccttatcacc cgatttgata
    34861 actgtcccta gctcacgaac aacctgacca tttacagtaa ctagtccttg tttgattagt
    34921 tcttctgcct tacgacgact ggcaactcca gcatgggcaa tgtatttatt aattctcatt
    34981 ttctaactca tttctttcta cgaatagctc tgtttcttct tgaatcaaat ctatttcaga
    35041 cacatcaggc aattcttcta gactattaat tcccatgtaa tccaggaaat aatccgttgt
    35101 cacatagaga tttggtctac caagaacctc tttcttaccg ttctcacgaa tgaggtcaaa
    35161 ggcctgtaat ttactgatgg caccgctgga attgactccg cgaatatcat caacttcaat
    35221 ccgagtaatg ggttgcttat aggctacgat tgataaggtt tccaaaagag cccgtgacat
    35281 agtctgattg attggtgttt tggcatagat tcgcaaaagg tttgcatatt cttttttagt
    35341 aaccaacttg tagcgattgg aagactctaa gatggctaag cctgacgctt tgtctgccat
    35401 atatttctca ctaagtttct ctaactgctg gctgacagct gtcggctgca tttccaacat
    35461 ctctgccaaa tttcgtaacg tcaagccatc ctcacctgcc acaaagagca ggacttcgat
    35521 ttcagctaag cgattcatct tcactcctta ctagataaat atctccaaaa gtctctgtct
    35581 gctccaagac gatttcatga accttgacca actctaaagt cgcaaggaag atcgtaatca
    35641 tttcattgac atcttgactt tcttgaaaaa gctgacggag ttcaaggcgt ggacctgtct
    35701 cgaaacgact gcgaacaaag tccatcatgt cttcgatttt atattcatca cgggcaatgg
    35761 tcgcatgaga ctgacggagg cttgcctgtt tttcagccat tactttagaa aaagctagga
    35821 aaatgtcaat gatggtctta tccttagcta actgtacatc atcataaatc aaatctaatt
    35881 tgggttttga aaaataattg gcccgttcat catgttgctc ccctaatttc tcactgagaa
    35941 gcttgaactt gcggtattct tccaactggt ccaagaggtc catttcagga tcatcttcgg
    36001 gatcaatttg ctcaacaacc ttcggtaata accgacgact tttgatgacc atcaattgac
    36061 tagccatgag catatattct cccgctacct ctaaacgcat ggcttgcaag gtagcaatgt
    36121 aggccaaata ttgctcaata acctctgtaa tcggaacctc gtaaatatct acttgatact
    36181 tggacaccag gtgtagcagg agatcaagtg gcccttcaaa atcttttaat tttatatcca
    36241 ttatctaaat ttttccaaac tcatgcttgt tttcagtccc aactgcttgg cgatttggtc
    36301 caaggatttt ccttcgtcca tatgttttag aatatactgc tcccgtaatt tttgggctgt
    36361 ccaatcaggc ttgccgatgg actggacaaa ttctgtcaga cgattaaaaa accattgacg
    36421 agaataggtc tgtcccttct tatcgaagac atagcgtcca gacagatgag actccatata
    36481 gggtatcaat tccttgggca gagtgagcac ccgcttggct cctcccttct caactgtcag
    36541 gacttgaaaa tccagattga cctgctgact agtcagctct gctatttcac taggagtcag
    36601 ccctagtaag gcaatcaaaa gagtaatcag ttgcccatca agccaaggac tttcttgaaa
    36661 gaggagagtt aaatcctcac gctccagttt ctttttgacg cttgctggtt ctgacatcgt
    36721 ttgcaattta taaaaacgat ccaggagatt attttcataa agaaagtaga gaaattgatt
    36781 gaccgctgac atttttcttt tctgagcagc aggtttcaag tctagaagag actgctgata
    36841 gaccaaaaga gactgttggc taatctcccc ctttgttact gtcacaaact gctgcaggtc
    36901 ataggtatag gacttttggc tgttgacact gacctttttg ctctggataa aagattcaat
    36961 cgcctgcttc atttcttgcc ttcttttgat gccaagggaa aattatgcaa aagcgcattg
    37021 atggctttca gaatagattt acgggtaata atccccagaa attccctgtt ttctccaaga
    37081 actggtagga aggattggtc gatgagcttg cgcatgactt ctgtcaaatc ataatccaga
    37141 cctaccgttt cttcatctgt ctttacaatc acagaaatat ctctgtttaa ctcatcatcc
    37201 gatagttcat tttcagcttg atatttaatg atttctgtca agccgatggt tccaaaaaag
    37261 cggccatctt ctgttaccac aggtacgcgt gaataggtca tgtgactgag taacagtttt
    37321 gcatggtcaa tattatgcgt atcaataatt actgccaatt tatccgctgg tgtcaagaaa
    37381 gttccttcct ggtccaataa aaagacttca aattctcttg caatcatctt gaaatatcct
    37441 ttgtcaatgc tgggtaaagt tggtgctgtc gattgtagta atccacatgg aagtgatcat
    37501 catagatggt cacaagagca tagagacact ctctgaccaa accgcgaggt tgactaacgg
    37561 agccaggatt gaggaagagg gtcttgccac gcacttcggc atcaggcaca tgcagatgcc
    37621 catacaaaca aatatccgca tcaacttcct gtgcccaata atccaaccgc tgccagccgt
    37681 aattaatgcc ataaagatga ccatgagtct gagcgatagt cacatcaccc aattgagtaa
    37741 tgagctggtc tggataaccg ccaaaatagt cgcagttgcc atttaccact tgaataccat
    37801 cccagagact atcttgacta tccagctccg aatcaccatt gtgaaagatg gcatcgacct
    37861 tgccaagata atgatgttta atatcctcta caatctgtct atccccatga gagtcgctca
    37921 tgactaggat tgttttgctt gctcctgcca tactggaaat gcctccacta atttttctag
    37981 tgcttgtgca cggtgggaaa tcttattttt ttcttctagg gttaattctg ccgaggtctt
    38041 acctgtttca cctacgagga aaagtggatc atatccaaac ccatcttccc cacggaggtc
    38101 cataccgata aagccttccc agtccgcttc gacaaccaaa ctatcacgat ttggagcagc
    38161 catgaccaga gtacaatgga attgtgccga acggtctttc agttcaaata ccatggccaa
    38221 ttcgtgcaag agcttggcat tattgagctc atctgtggca tctgggcctg aaaaacgggc
    38281 agaccaaact cctggcaaac cacctaaagc atcaaccttc aaaccagaat catctgccaa
    38341 gaccatcttg cctgtcagct ctgctatggt ttcagccttg agccgtgcat tttcctcaaa
    38401 agtcatacca gtttctgcta catctggcag gtcaggatag ttgttgaggt tctcaacctg
    38461 gtagccaaaa cgctcaaaaa acttacggaa ttccttggtc ttaccttcat tttttgtagc
    38521 gatcaagatg gtatctccta cgcttgccaa tcccttgtct tgaccgaaga aatctgccgt
    38581 gctaacccct gcttggggca aatggactaa gagaagtttg tcattctcag ttaccagaat
    38641 agctccttgg tgttggagaa ccttgaactg acgattgttt aactcattca aagtatcaca
    38701 ggcaaattga aagagggcaa attcagactg aagtttaatc acttcaatgt tgacacactg
    38761 gttaaagttc tcgtcttcat aattgccagc aatcagtttg tcaaataatt gaccaatctg
    38821 gtaaatttcc tgctctctgc cattttcacc aaatgaacca aatagattgg caaagctggc
    38881 ttttccgata aaccaattgt gttcatctct gtattcgtat atcttgtctg tcatagttct
    38941 acatgctcca catgaatatc aatgcccatc cagctttcag ctatttcttt aaaagctgcc
    39001 ggactagctg ttgtgtaaaa tctgtgctga atatcctttt cggtacgact gcggttgatt
    39061 tgaaaataat ttaataaaac agaaatatct cgcgcgcact ctgccccact gtcaatcaac
    39121 ttgacatcct tgcccatggc attctggatg atggggcgaa gtaggggata atgggtacat
    39181 cccaagacca aggtatccac tttcccaacg agtggtcgaa gtgtctcata aacaaccttt
    39241 ttggcaagac tggattggtg gctattggac tcaaccagtg gtgcaaattt gggacaggct
    39301 aggctgtcta cctgcgtttc tggagaaagg gcctgaatct tttgtcgata aatatctgat
    39361 tgaatggtca tagccgttcc taagacacca accttaccag tttgcgtcgc cttaatagct
    39421 gccgaagcac ctggtaaaat aactcccaaa acaggaatat ccaacttttc cttgacttct
    39481 tcccaggcta ccgctgttgc cgtattgcag gcaaagacaa tcatttttac attttttgtc
    39541 aaaaggaaat tgaccaactg ccaagtatat tctctgattt gttccgctgg acgggggcca
    39601 taaggtgccc gtgccgagtc ccctatataa acaatttctt catggggaag ttggcgcatt
    39661 aactcacgcg caaccgttaa tccccccaca cctgaatcta aaaaacctat tggtcgatta
    39721 tccataatac tgagaatagc cagaaaatct gactagcctt tcttttctac tcaaaaaatg
    39781 ggatctggga atgaatatcc cagtcccagt ttgattattt tttcttgctt gccacttttt
    39841 gttggctctt gatttggcga agtacttgtt gtacttttgc ctcgcttggt ttttgcccca
    39901 tttggctcat catcaaacgc aaagcatttt catccaaaac tggcttgtca gcaatgtagt
    39961 tttccacttg tttgcgtgac aagtaaatac ccaaggctac accacctgca aatgccaata
    40021 caataagtaa aattgctaaa cctaagttca tttgtcaatc tcctgactct tctaaaaata
    40081 attcattcgg aattgccctg cgacaatctc ttaatgaatc tattatacca aatttagcag
    40141 gcttttccaa gacttacctg tcaaaatcaa aaccgtaaat ggtcgcgaaa taatcctctg
    40201 gtgtttcagc acgacgaatc atacgcgctg tgccatcttc ctgcaaaagg atttcagagg
    40261 aacgcagacg accgttgtag ttgtagccca tggagaagcc gtgggcacca ctgtcatgaa
    40321 tgaccaaggt gtctcctact tctgcgcgtg gtaattcccg attaaccgca aacttgtcgt
    40381 tgttttcaca gagggaacct gccacatcca caacttcgat tggcgcatct gggcgcgtga
    40441 tattggtgat atggtggtag gcgccataga aggctggacg cataaggttt gcagccgaag
    40501 catccacacc tatataagtc cgataggttt ccttacgatg gagcaccttt gtaatcaagt
    40561 gaccgtgtgg cgccaacata aagcgaccca attctgtaaa gattttaata tgtcccatac
    40621 cagctggcgt gagaatttcc tcataaacct tacggacacc ctcaccaatg acagcaatgt
    40681 cgtttggttc ttgctcagga cgataattga ctccaatccc acctgatagg tcgatgaagt
    40741 ccaaggtcac atctgtttcc tcacgaattt ccaaggccaa ttcaaaaagt tgatgagcta
    40801 agacaggata gtagtcattt gttactgtat tcgaagctag aaaggcatga ataccaaatt
    40861 ccttgacacc aagctctttt agttccttat agcctttcat caactgttcc ttggtcatcc
    40921 caaacttaga ctcttctggg tggtccataa tatccgttcc cagcgagaag accccacctg
    40981 gattgtaacg gaggcagacc gtttctggga taccagcaac atttttcaaa aactcaatat
    41041 gctcgtaggc atcaaggtta atggtcgccc caactttacg agcatagaca aactcttgcg
    41101 cttgggtatc atttgatgtg aacatgatgt ccttaaagcc caatttttca ctcatgagta
    41161 cttctacatc cgtcgcacag tccactccac aaccttcttc ttgtaaaatt ttcaaaatag
    41221 cgggtgtcgg tgtcgccttg accgcaaaat attccttaaa gcctttgttc catgcaaatg
    41281 ctgcattgag ggcacgggcc ttctcacgaa tgcctttttc atcatacaaa tgaaaaggag
    41341 tcggaaattg ctccgtaatg gtttctaaaa cttctttact aacaaatggt gtcttggtca
    41401 tgtcactacc tcatcaaata tttttcctat tatatcacaa atatgtgagg aactgtagct
    41461 ttcaactcca ccaaatactt gcaaaataaa ttatgagcgc tataatgtga ttatcattaa
    41521 aaaaggagta atatatgtca acattagatt ttgattttac agaacgcttg tatgccaact
    41581 atctagctaa tccaagccta caggcaaccg aaaatgccgt tagccacaac ggacttttga
    41641 aatccttaga aacacgccaa agcgccatcg acaatgacta tgtcttttca attgacttga
    41701 ccaaggacgc tgtttcaaac caaaaggctt ctggacgttg ctggatgttt gctgcattaa
    41761 acaccttccg ccacaagctc atctctgatt tcaaactgga gaattttgag ctatcacagg
    41821 cccatacctt cttttgggat aaatatgaaa aatccaactg gttcctcgaa caaatcattg
    41881 ccacagctga ccaagaaatt ggtagccgta aggtaaaatt cttattggat accccgcaac
    41941 aagatggcgg tcaatgggat atggttgttg ccctatttga aaaatatggt gtggtaccga
    42001 aatccgtcta tccagaatct atctcatcca gtgccagccg tgagctcaat cagtacctta
    42061 acaaattgct ccgtcaagat gcacaaatct tgcgagacct cctcgccaaa ggagcttcct
    42121 cgaaagaagt tcaaatacaa aaagaaaact tgcttcaaga aatctttaac ttcctagccg
    42181 tcaaccttgg actccctcca cgcagctttg attttgcata tagagataaa gacaatgtct
    42241 atcaccgcaa tacaaatgtg acacctcagg cattctacga gaaatacgtt ggtttgaaac
    42301 tatctgacta tgtctccatt atcaatgctc caactactga taaaccttac aataaatctt
    42361 atacagtcga attgttgggg aacgttgttg gtgcccctgc tgtccgctac ctcaatgtag
    42421 aaatgaaccg ttttaaagaa ctagctattg ctcaactcaa agctggtgag tccgtttggt
    42481 ttggttccga tgtcggtcaa agtagcaatc gtcaaactgg tattatggca accaacacct
    42541 acgacttctc ttcaggtctg ggtatccatt tccatcaaga caaggctgga agattagact
    42601 actccgaaag cttgatgacc cacgctatgg tcttaactgg tgttgattta gacgataatg
    42661 agcaacctct caaatggaaa gtagaaaact cttggggtga caaggttggg gacaagggat
    42721 acttcgtagc atcagatagc tggatggacg agtacactta tcagattgtt gtccgaaaag
    42781 aattcctcac acaagaagaa ctagcagctt atcaagctca accacaagtc cttgccccat
    42841 gggatccaat gggagctcta gcataacaaa cgacatataa aaaaagaggg cacccctctt
    42901 ttttatatgt cataattagt ctcgactcaa tccaccaaag atacggagta agttgaggaa
    42961 aaggtttata aagtcaagat agagctgaag cgccatagat acgacccaac cttgaccaac
    43021 attaccacca gtttgttcga aaacattgcg gatacgttgg ttgtcataag caatcaaacc
    43081 tgagaatacc aaaacagaaa tgatagacat cataaagctt agaccagagc tacgaaggaa
    43141 gatattaata acacttgcaa taataattcc ccatagagct gcacgcaatg cctgagccat
    43201 accagaaaga tccttcttcg ttgtcatccc aattacagcc atgatagcaa acataagagc
    43261 cgctgacaca aaggcaagaa caactgtttc gctggtatag aacatcaaga tcatgctgat
    43321 ggtaatccca tttgttactg agtaggcaag aaacattggt agagccattg ggctattttt
    43381 agctgccatt gctgaagcag aaacaaccaa ggcaatctga ccaatcataa tcagcatcat
    43441 gatgatggag cctgcactca gcagactaag caataaagat tgaaagactg taacagctag
    43501 gaatgatact aatgctgata gtccaattcc catagcaacc actccgtaaa tcttgccaaa
    43561 gaaacgattg agggcggtgt tatccacctg attaataata aaagaatcgt tattcatgac
    43621 attctccttt aaatcatctt attgaaaacg aaagaccttg cgatttttcc acttgtgttg
    43681 cataggcaga ctccattctc ttactgccca atacttgtca acacaagtca caatccaaga
    43741 ctctttatag cgaggaggag caatcgttgc accaaacatg tgcttcacaa taatatcttc
    43801 ttctaattta ttaagttgaa tgagtttctg agcattgcgc ttagcaatcc gtggatgaac
    43861 ccaagcatga cttttattaa acttagtatc tctccagtca tagaaaaaga gatcgtgtaa
    43921 tagcccaccg cgagcggtcg attttgcatc ccatccgaac tttttcgcaa ttttatagct
    43981 tgtataagat acgttaatgg aatgttccaa ccgtgtggag taataatgat gaggaatctt
    44041 ccccaatttt tgaactttag gtgtagcaat taaatgcccc acatagtcca tgtattcttt
    44101 atcttgttta tatgcaacca ttctttgaac ctcgttggat tattatacca cactatagta
    44161 caattggctt aaataaagct aaatagtaaa attcctgctg caatcgccac attgagactt
    44221 tcagcctgtc ctggcatggt gatgtgaaca agttgatccg cctcatcagc cactaaatca
    44281 gaaattccct gaccttcgtt tcccatgagc aaggcaaaac tagaatgtgg cgtaatttcc
    44341 ttatagtcaa ccgactgact agatagggtc gttgccaaga tttttatctg attgctttta
    44401 agagctgtaa gaatggagga aattggcatc cgataaactg gcaaatggaa gtgactcccc
    44461 tgcatggaac gaagcacttt catattataa atatcagccg acttatccga tagaaatact
    44521 ccatcaaaac cagctgcatc agctgtacga atcattgtcc caacatttcc agggtcctgc
    44581 acatcttcca gaaccaaaaa ttttccatcc aaagtctcag gtagaagttg gctcggcaaa
    44641 gcaagttgag ctactacccc ctgaggtgtc ttagaatcag ctaaatcttg cataatttca
    44701 ggactgacaa ctgtcacatt ggctaaacct gcaacctttt caaaatactc ttccaccaca
    44761 aaaatatgct caatattggc tccagcctcc atcgcttcct ccagcaaatg ccagccctca
    44821 atcagataag aagatgtccg atattttttc tgttgtaatt ttttaacttg tttgaccaaa
    44881 ttgttggtct ttgagcgaat gatgtccatg tttgtccctt ttctttttct gttcaacaac
    44941 tttattaata aaataccggg tacgcttgat accaaatata tcttattccg tcaagaaatc
    45001 atcatcaaga tggtgaacag gattacccaa ccatgatata ataaagtaaa ggtcttgtca
    45061 aaaggagaaa cttatgcgta aggtaaaaat gattgcatct ggtattgtcc aaggagttgg
    45121 ttttcgatgg tctgtccaat accttgctat ggaaattggt gatatagctg gtagggtctg
    45181 gaacaacgaa gatggtactg taaccatcct cgcccaatca gaaaatgctg agaagctcag
    45241 ccattttatt catgaaatac gaaaagggcc ctctcgtatg gccaaagtga cctacctaga
    45301 tgttaccctg gccaattttg aagactataa ggattttcag gttagctata gataaaactt
    45361 gtatatttcc gtcaaaaaaa gtaaaataga gagtatactg aaaaaaacaa aggaacgaaa
    45421 aaaattgaaa aataaacgtc tattcatgtt gtcaggcatg gccttatcaa cacttctttt
    45481 cttatctggt tgtgttcaaa ctgataaaag cggaaatcct acaggtctca tttgggattg
    45541 gttgggacaa ccaatgtcca acttgattcg cttctttgca gaagatcaag ctctaggatt
    45601 tggtcttgct attatcatcg tcaccttatt ggttcgattc atcatcctcc cattgggaat
    45661 ttaccagtct tggaaagctg ctatccaatc tgagaagatg aattatctca aaccgatttt
    45721 aggcccaatc caggagcgca tgaaaaatgc aagctctcaa gaagagcaac ttgctgcaca
    45781 acaagagtat tttgcaactc aaaaacaata cggtgtgagc atgctcggcg gaattggttg
    45841 tttgccgatg ctgattcaaa tgccattctt ctctgcaatc tactttgcgg ctcgccacac
    45901 accaggaatt tcagaagcta ctttccttgg tattaattta ggttcaacta gcctgatttt
    45961 gacagttgtt gctggtattt tatactatgc ccaatcgctc ttaatgcaag tcggcatgga
    46021 tgaagaacag aaaaaacaaa tgaaaaccat ggctctgatg aacccaatta tgatcatgat
    46081 gttctcattt gggtctcctg ctggtgtgac tctctactgg gttgtcggtg gtctcttcgg
    46141 tattcttcaa caagctatta caaacttcat tttgaaacct cgtattcgta aacaagtgga
    46201 agaggaattc aaaaatatca cagtgtcagc aactcctcgt aaaacgaagg acgttactcc
    46261 aactgcttca gcagttattg aagaaaagac atctaacaag aagagaaacc gtaatgcagg
    46321 aaaacaacgt tctagataat aaacactaaa agattggaat ttccaatctt ttttagcacc
    46381 ttcgtgaata aaaagagaga atctttcgac tctctccaca ccttatttcg ttttttcaac
    46441 cttcaagatt tttacatcat aactaccagc aggtgtttca attgttgcaa catctcctgt
    46501 ttttttacca atcaaagcat gaccaattgg gctttcattt gaaatcttgt ttgcaaaggc
    46561 atctgcacct gcagcaccaa cgatatgata gacttcttcc tcggtctcac caacttcttg
    46621 aacagtcaca gtcttaccaa ttgctacttc atccgcagca actgcatcac tgtttacgat
    46681 ttcagcatag cgaatttttg tttcgattgt tgagatttga ccttcaacaa aagcctgttc
    46741 atctttagct gcttcgtact cagagttttc tgaaaggtct ccgtaagaac gagcaatttt
    46801 aatacgttca acaatttctg gtcgacgaac tagctttagt tcctctaatt ctttttctag
    46861 tttttccttt tcttccaagg tcattggata tgttttttct gccatttgtc tttccttttc
    46921 ttt
//
LOCUS       DASGBY010000003        34266 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.003, whole genome shotgun sequence.
ACCESSION   DASGBY010000003 DASGBY010000000
VERSION     DASGBY010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 34266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34266
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.003"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            14..169
                     /locus_tag="U1396_000106"
     CDS             14..169
                     /locus_tag="U1396_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid-binding protein"
                     /protein_id="HEM5341335.1"
                     /translation="MDEYFTMMAVVSSDEKKDFTKLRAELEAFGQGLNVKINIQSAAI
                     FDAMHNL"
     gene            181..1518
                     /locus_tag="U1396_000107"
     CDS             181..1518
                     /locus_tag="U1396_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEM5341336.1"
                     /translation="MDIRQVRETIEMIEEQNFDIRTITMGISLLDCIDADIEKAAEKV
                     YTKIVTKAKNLVAVGDEIAAELGIPVVNKRVSVTPIALIGAATDATDYLPLAHALDKA
                     AHEIGIDFIGGFSALVQKGYQKGDEILINSIPQALAQTTKVCSSVNIGSTKTGINMTA
                     VRDMGRIIKETAEASDMGAAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGV
                     VKRALEKVRGESFDVVAETVKKTAFKITRIGQLVGNMASERLGVKFGIVDLSLAPTPA
                     VGDSVARVLEEMGLETVGTHGTTAALALLNDAVKKGGVMACNQVGGLSGAFIPVSEDE
                     GMIAAVQNGSLNLEKLEAMTAICSVGLDMIAIPETTPAETIAAMIADEAAIGVINQKT
                     TAVRIIPLGKEGDMIEFGGLLGTAPVMKVNQASSADFINRGGQIPAPIHSFKN"
     gene            1594..2289
                     /locus_tag="U1396_000108"
     CDS             1594..2289
                     /locus_tag="U1396_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5341337.1"
                     /translation="MADVRLYISRHGKTMFNTIGRVQGWCDTPLTKAGEEGIRELGLG
                     LKDAGLEFKLAVSSDLGRTVQTMTIAQRELGILGKIPYYQDKRIREWCFGSFEGMYDA
                     ELFQGVLPRLKGTVDATGMTFSEIAAGIQEADTAGWAESWEVLSNRILTGFEAIAQDL
                     EKQGGGNALVVSHGMTIATLAHLLEPERGANIFLDNGSITVLKYENGKLLIEAVGDLS
                     YRKRGAELIAQGK"
     gene            2511..3545
                     /gene="hrcA"
                     /locus_tag="U1396_000109"
     CDS             2511..3545
                     /gene="hrcA"
                     /locus_tag="U1396_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEM5341338.1"
                     /translation="MITQRQNDILNLIVELFTRHHEPVGSKALQEMIASSSATIRNDM
                     AKLEQLGLLEKAHTSSGRMPSRAGFQYFVNHSLNLEYIDEEDVYQVVKAFDFEAFKLE
                     DILERASQVLADLTGYTSVILDVEPTSQQLTSFDIVQLSSHDALAVLTLDQSKPVTVQ
                     FAIPKNFLTRDLEVLKRLVDERFVGQTVLAIHYKLRTEIPQVVQRYFTTTDNVLDLMD
                     YIFSNLFQESVFISGKVASLTYGNLATYQLLDNPQVLASELRQGLAPNQQTSISVAEH
                     REPALADVTVIHHRFPIPYRGMAQMSLLGPVNMNYRRQMSLINIISRVLFMKLTDYYR
                     YLSSNHYEVN"
     gene            3682..4194
                     /gene="grpE"
                     /locus_tag="U1396_000110"
     CDS             3682..4194
                     /gene="grpE"
                     /locus_tag="U1396_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEM5341339.1"
                     /translation="MSEEIKNEEIVEEVETTEEVVETPEKSELDLANERAEEFENKYL
                     RAHAEMQNIQRRANEERQTIQRYRSQDLAKKILPSLDNLERALQVEGLTEDVKKGLEM
                     VQESLIQALKEEGVEEVATDVFDPNLHMAIQTVPATDDCPAEHIAQVFQKGYKLHERL
                     LRPAMVVVSE"
     gene            4290..6113
                     /gene="dnaK"
                     /locus_tag="U1396_000111"
     CDS             4290..6113
                     /gene="dnaK"
                     /locus_tag="U1396_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002946936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEM5341340.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKN
                     GEIIVGDAAKRQAVTNPDTIISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAE
                     EYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDK
                     DEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKEN
                     GIDLSADKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGAAGPLHLEMTLTRAKFD
                     ELTYDLVERTKIPVRQALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAETGKEPNKS
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSK
                     SQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVTFDIDK
                     NGIVSVKAKDLGTQKEQTIVIQSNSGLTDEEIDRMMKDAEANAEADKKRKEEVDLRND
                     VDQAIFATEKTLKETEGKGFDAERDQAQVALDELKAAQEANNLDDMKAKLENLNEKAQ
                     ALAVKLYEQAAAAQQAAAGQEGAQTANNAGDDVVDGEFTEK"
     gene            6647..7783
                     /gene="dnaJ"
                     /locus_tag="U1396_000112"
     CDS             6647..7783
                     /gene="dnaJ"
                     /locus_tag="U1396_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEM5341341.1"
                     /translation="MNNTEFYDRLGVSKNASPDEIKKAYRKLSKKYHPDINKDPGAED
                     KYKEVQEAYETLSDPQKRSAYDQYGPAGANGGFGGGAGGFGGFDGAGFGGFEDIFSSF
                     FGGGGATRNPNAPRQGDDLQYAVNLKFEEAIFGVEREVSYNREATCRTCTGSGAKPGT
                     SPVTCGRCHGSGVINVDTQTPLGTMRRQMTCDVCHGRGKQIKDPCATCHGTGHEKQAH
                     TVTVKVPAGVETGQRIRLAGQGEAGFNGGPYGDLYVVIQVQPSDKFEREGTTIHYKLN
                     LNFVQAALGDTVHVPTVHGDVDMVIPEGTQTGKTFRLKGKGAPSVRGGAIGDQYVTVN
                     IVTPTGLNDRQKAALKEFAAAGNIDVKPHKKGFFDKVKDAFEDL"
     gene            8059..8886
                     /locus_tag="U1396_000113"
     CDS             8059..8886
                     /locus_tag="U1396_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HEM5341342.1"
                     /translation="MKSWVENVTIKKYEDRSGLTGLKQGPLVWTEVFLREVNRQSNTG
                     ILHFWPMDQTVILGMMDSQVAQLDKGLASIGQAGYSPIIRSLGGLAVVADDGILNVTL
                     IFPNPSGHKVDLRESYQVMVDLIAQALSDFPFEVVSGEVATSYCPGTYDLSIKGRKFA
                     GLAQRIYQEAIAISAYISVSGNQVKRGQVVADFYAASFAPQEVSDRFPQVNPNSMANL
                     SDLVAQDLTMEDMKIRIEHVLIENGAFLTTFYPSSDNMADFMALGKTIKQSMEKYGI"
     gene            8896..10344
                     /locus_tag="U1396_000114"
     CDS             8896..10344
                     /locus_tag="U1396_000114"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEM5341343.1"
                     /translation="MTWKDATAMAQAVNQKQVSAKELVQETIDRIEKLNPTLNAVVSK
                     QYEEALKEAEKEDYLGKPFAGVPFLLKDLGQNEKGQPSSAGSRLLAGRPAGHTDTYVQ
                     RLKDLGFIIVGRTNTPEFGFKNISDASLHGPVKLPLDPSRNAGGSSGGAAAALASGMV
                     SIAAASDGGGSIRIPASFNGLIGLKTSRGRIPVGPKSYRGWQGASVNFALTKSVRDTQ
                     RLLYHFQDYQLEAPFPLAKLSEEEVFGKLSRPLKIAYYTKSPVGSKVSPEAVEAVQKA
                     CHHLANLGHEVVELSEYPLDGVALMKSFYLMNSVDTAQMFDEIEAAFGRQMTLDDMEV
                     MSWAIYQSGQTIPAKLHSKALLDWDQFGASMARFHEEYDLLLTPTVADVAPKHGQFDL
                     SADLLDRLKQTQNYSMEEQQDLIWQMFEDSLALTPFTQQANICGQPAISLPTYVRADG
                     LPIGIQLTASKGREDLLLRLADQMEAAGLLNL"
     gene            10469..11344
                     /locus_tag="U1396_000115"
     CDS             10469..11344
                     /locus_tag="U1396_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000751024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5341344.1"
                     /translation="MLKKVLASALLVSTLTLAACSSSSSNTSSSSAEQTQWEKVQEAG
                     VLKVATPGTLFPTSYYNDAKELVGYEIDMINEIGKRLKLEIEYQEIGVAEAFTAVDSG
                     KVDISVNNFDMTEARKEKYNFSIPYKYSVGGYIVREDGSSGIEAADLSDWTGKKAGGG
                     AGTQYMKIAEKQGAEPVIYDNVTNDVYLRDVSTGRTDFIPNDYYTQVMAIKWANANFP
                     DIKVKMGDAKYNPTEQGIVMSKADTSLKEKIDEALEAMKADGTLKAISEKYYAGQDLT
                     VPVENADQLPVIEVE"
     gene            11435..12106
                     /locus_tag="U1396_000116"
     CDS             11435..12106
                     /locus_tag="U1396_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5341345.1"
                     /translation="MDINWQAVFNADIAREAIPQILEGLPYTLSLSLIGFALGTFCGF
                     FVAFMRMSKFGPLRWLAMAHISLMRGIPLMVLLFFIYFGLPFMGLQLDAISASIIAFT
                     SMSSAYISEIIRASLSAIDKGQWEAARSLGLRTNVIYRKIIIPQAFRIALPPLSNVLL
                     DMVKSTSLTAMITVPEIFNKAKIVGGAKSDYMTVYICVALIYWAICTLYAFGQLRLEK
                     RLATY"
     gene            complement(12143..12613)
                     /locus_tag="U1396_000117"
     CDS             complement(12143..12613)
                     /locus_tag="U1396_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341346.1"
                     /translation="MKKYISLIALCMMIPCLSACHSVTSEVNKEMQNELTAASIETEK
                     ALKTDERLAEIESFQQIVEIAASKGEFSLESSFSGKVYLMATKENLEKLSKEEFTLNK
                     KSFSTIDAGSSNDFNIRYKHQTYFTVQSLSVQDMEDFEYTKSSSTSAILVFYPN"
     gene            complement(12625..13131)
                     /locus_tag="U1396_000118"
     CDS             complement(12625..13131)
                     /locus_tag="U1396_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEM5341347.1"
                     /translation="MNKKIFFNIVIQLLTFIRHGLIALTGLIMLALLILLIGGKPIQN
                     SLQLDVPLPIIVIILIISILLVACFIYMATILKKLLINFQTGTIFSTENVVYTKIILG
                     TLIIWTSIQFASAFFLSYLDLENVSDLYDFSLSDYFINGVLIIIALLAKMVLEKGVLL
                     QAENDEII"
     gene            complement(13133..13348)
                     /locus_tag="U1396_000119"
     CDS             complement(13133..13348)
                     /locus_tag="U1396_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341348.1"
                     /translation="MEMIRVNLDKVLKDRQMTSKDLAEQVGITEANLSILKTGKAKGI
                     RFNTLMSICRILDCQPGDILEYVKEGE"
     gene            complement(13350..13874)
                     /locus_tag="U1396_000120"
     CDS             complement(13350..13874)
                     /locus_tag="U1396_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341349.1"
                     /translation="MKTNLLKTAGLLAGCVRYFFYLLIAGYIFFSLAGFRGDSFVIGS
                     WEYTFNKPIDQISVWLILLTSGLILIILAVLSHIAHLIQKLCKLLLEEDYFASASLEL
                     YQKLFISLLVLTAGQFCLTSLITLTNAAGPNNFLNLRWSDFILNALFIFLTYFVWTLV
                     QKGQQLETENSEFI"
     gene            complement(14009..15877)
                     /locus_tag="U1396_000121"
     CDS             complement(14009..15877)
                     /locus_tag="U1396_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011528775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEM5341350.1"
                     /translation="MTLVTNLKQHSNIITTALCLALILIGILLFQTGQGWAPILFISA
                     FVIGGYQSAKEGISELIFDKHLSVDLLMILAAIGSGLIGYWMEGALLIFIFSLSSTLE
                     ELAMEKSKNAIAALMNMTPPTARKIEENGDITVLDTAAIRIGDLLQVRKGDTVPLDAT
                     LISPQSIFDESMITGEPLPAEKMTGAAVIGGTINQGPTVTVQVTAEKGDALFDKIVQM
                     VENAQESKSKTATFIENMEDTYVKIVLVVVPLFILFAHFALCWDWLTAFYRGMILLTI
                     ASPCALVASSSPATLSAISRAARKGMIIKGGDIADNIANLEAIVFDKTGTLTIGKPEV
                     VDATYLGDEKLIREVVQAVEKQSSHPIAQALMTYTADSSAIALQSLEDVTGKGLVAGY
                     EGDSWKIGKAGFVVDSLVSPLSAGLLAQIDEAESTGKTLVYVSQNDVLVAIFMVEDSL
                     KPESKQLIAQLKEMGVTPILLTGDQEKTARYVASQVGIDRVIANCLPTDKAAVIQKLQ
                     TEFASVGMVGDGINDAPALAQANVSYAMGSGTDIAMESADIVLMEDLTRIPYSIRLSK
                     KMRGIIKQNIIFALSVIALLIVSNLFQSINLPLGVVGHEGSTILVILNGLRLLYFK"
     gene            complement(16039..16494)
                     /locus_tag="U1396_000122"
     CDS             complement(16039..16494)
                     /locus_tag="U1396_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEM5341351.1"
                     /translation="MELHSHFNAENQTAFEHVIQHLKEKGVRITETRKAVVAYIIESD
                     DHPSAEMIYQDLLPNYPNMSLATVYNNLKLLLEEGFVTKLKQTNDNTTYYDFMGHEHL
                     NVICEVCGKITDFMDVEIPSLKKEAHTQTGYKITKEVLSIYGICPDCQG"
     gene            16661..17410
                     /gene="truA"
                     /locus_tag="U1396_000123"
     CDS             16661..17410
                     /gene="truA"
                     /locus_tag="U1396_000123"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEM5341352.1"
                     /translation="MTRYKAIISYDGHDFSGFQRQTHARTVQEEIEKTLVRLNSGQPV
                     TVHGAGRTDAGVHAYGQVIHFDLAGSRDVEKLRFALDTQTPEDIDVVQVEQVADDFHC
                     RYAKHSKTYEFLVDIGRPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTAS
                     GTSVEDKVRTIKAASMEYDQRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQ
                     IKRILAEKDRGLAGPTAAGNGLYLKEIIYED"
     gene            17400..18161
                     /locus_tag="U1396_000124"
     CDS             17400..18161
                     /locus_tag="U1396_000124"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004184219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM5341353.1"
                     /translation="MKTKYILALSGNDIFSGGGLHADLTTYTVHGLHGFVAVTCLTAM
                     TEKGFEVIPTDAAVFAQQLASLKDVPFSAIKIGLLPTVDIAEQALAFVKAHQEIPVVL
                     DPVLVCKETHDTEVSQLRDELLKFLPYVSIITPNLAEAQLLLQKDIETVEEMKQAAVA
                     LYDLGAKAVVIKGGNRLGGSEAIDVFYDGQEVVVLQSPLLSENNVGAGCTFASSIASQ
                     LLLGREPFEAVRLSKDFVYAAIEKSDDYGVIQYEK"
     gene            18151..18636
                     /locus_tag="U1396_000125"
     CDS             18151..18636
                     /locus_tag="U1396_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5341354.1"
                     /translation="MRNKKTQELVLLAILTALSLVLAFVYVPTATGFVTLLDVGVYFT
                     AFYLGKKEGAIVGGLAGLLIDFLLGYPQWAFFSLLFHGAQGYFAGWTGKKRIFGLVLA
                     TLSMVGGYYLASRIYFNDLKAIESVLSNTLQNTVGLVVGYILAQAIERIGAVNHVIKG
                     N"
     gene            18617..19183
                     /locus_tag="U1396_000126"
     CDS             18617..19183
                     /locus_tag="U1396_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01440 family protein"
                     /protein_id="HEM5341355.1"
                     /translation="MSLREIKDQTQQVVQEVLELSNLQKGQIFVLGLSSSEVIGGHIG
                     KNSSLEVGEVVVETILEILDQKGIYLAVQGCEHLNRALLVERELAIQKDLEIVNVLPT
                     LHAGGSGQLAAFKYMKDPVEVEFITAQAGVDIGDTAIGMHIKHVQVPIRPSLREIGQA
                     HVTALASRPKLIGGVRAAYQEDKIRKGS"
     gene            19183..19797
                     /locus_tag="U1396_000127"
     CDS             19183..19797
                     /locus_tag="U1396_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1349 domain-containing protein"
                     /protein_id="HEM5341356.1"
                     /translation="MKEFTVKDLVWTRPPRQFTISDEEITITTHPQTDLWQKTYYHFV
                     NDNAPVLQMETEEDYFSFTVKTDFAGSHTRFDQCGIVLYQDSENWLKCSIEYENDDFQ
                     HLGSVVTNHGFSDWATTEISSQVKSIWFRLSRRGADYCFENSEDGIHFKQMRVCHFHQ
                     GTGKIAFGLYACSPENSSFTARFTNMELSDCKWLPHDGQEPDEI"
     gene            20070..20501
                     /locus_tag="U1396_000128"
     CDS             20070..20501
                     /locus_tag="U1396_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5341357.1"
                     /translation="MDTKFSVALHILTMISESKEILSSQALAESVGTNASYIRKVIAL
                     LKNAGLITSHQGRSGYQLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQH
                     IEGAMVPIFSSVEQDLENQLSRQSLDNVIDNLYQSAQETRI"
     gene            20581..21582
                     /locus_tag="U1396_000129"
     CDS             20581..21582
                     /locus_tag="U1396_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEM5341358.1"
                     /translation="MKAAQHTSYNKNKITLNLTEIAKPQIKPNQVLVKVTAAGVNPLD
                     NMISRGDVKLIVPYKLPQTAGNELVGLIEEVGSSVTTFVAGDRVFGRLPLDSIGAFAE
                     YVAVDAQALAKVPAYLTDEEAAAVPLTALTIMQALDLMGAEAGKTIFISGGTGGVGGM
                     AIPIAKAKGLTVITNGDGASGERVLKLGADRFIDYKTEDYTKTLSNVDYVLDTLGGAE
                     TEKQMSIMEKGGQLVSLRAMPNGEFAKRMNLPKWKQILFGLAGRSFDKMAKKYGVHYH
                     FIFVESNGRQLQEVADIFSKLEIKPSIDTVYPFEEVNAALDKVANGRSRGKTVLSFN"
     gene            21608..22453
                     /locus_tag="U1396_000130"
     CDS             21608..22453
                     /locus_tag="U1396_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5341359.1"
                     /translation="MSYITTKNQYITVSNNKIAYRELSKGKSDIPLVMLVHLAATLDN
                     WDPKLLDLLAEQHHVIVLDLPGVGASQGKVAPTIPGMAEQAVSIIKALGYEKINLLGL
                     SMGGFIAQEIVRLDSQLVNRLILAGTGPRGGFEVDKVTGKTFRYMLKAGLERVDPKRY
                     IFYNHDEAGRLEAEKVLGRMGQRSAAHADKDMNVPGFLTQLKAIKRWGREPQDDMTFI
                     TQPTLIVNGDKDMQVPTENSYTMHEKIKNSQLIIYPNAGHGSIFQNVEDFSKALLAFL
                     EETNA"
     gene            22446..23315
                     /locus_tag="U1396_000131"
     CDS             22446..23315
                     /locus_tag="U1396_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5341360.1"
                     /translation="MPKTILITGSTDGIGKHLAMKLASEGHEVILHGRNSEKFRVALS
                     DIQLKTGNKKIHGYLADFSKLADVYRFSQEIKRDFEQIDVLVNNAGAYFGDARVATAE
                     NIEMTFMLSVQVPYILTTELLPLLEKAVGRVIHTSSFMHHFAQTRGLDFGLEQSYSAA
                     MAYNNAKLYTIWLAIAQAEALEKQGSSVTVNAYHPGLIATNLGNDGVKRNLRSRILTS
                     LMKPFSKDLDQGIETGYYLSLSPEVAGQSGRYFAEKKVAKVSLKGFDVPKSQALLAYL
                     DKKIQVFKESYRD"
     gene            23308..24519
                     /locus_tag="U1396_000132"
     CDS             23308..24519
                     /locus_tag="U1396_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase family
                     protein"
                     /protein_id="HEM5341361.1"
                     /translation="MTKILLENLQLPNGQVLDNRFFKSAMSETMADSQGAPSDDLIAL
                     YDFWAKQGMGVLVTGNIMVDGRYLGEPGNVVLDSDDHLAQFRKWAAVGKKNGVPIWLQ
                     LNHPGKQMYRSINQTPIAPSAIPISGGSASAFRPPREMTVFDIKEARDKFIAAGLRAK
                     EAGFTGVQLHAAHGYLINQFLSPADNQRTDRYGGSLDNRMRFLVEVYQGLRDKVGPDF
                     TIALKLNASDFKEEGFGFEDCKHVVKTMSDLGIDLIEISGGNYETPVFGSEYENGAGF
                     VTYALALADLTSVPIVSTGGFRKVTQMEEAIKDGVSMIGLARPFVLRPSLVNDYRQVG
                     DVQLTTPRLTTGLPKLDKALGPIIGVSYYEAQMKRLAMGKSVTVSQHAWPYLLQTIKA
                     HGLSALKPRRK"
     gene            complement(24786..25295)
                     /locus_tag="U1396_000133"
     CDS             complement(24786..25295)
                     /locus_tag="U1396_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM5341362.1"
                     /translation="MERVKRKESLFVESVVEALWELLEDKSFEKISVSELVERAGIGR
                     VTFYRNFSNKEEVLERSFNMELQAWLSERQIDLSDWSDAHLLLALRQFFDFWYEQQDK
                     IRLLTTNHLDYLLEEVLDRYFKERLGDLTDDFHLQFIVGGFFRVLKTWVARGCKESPD
                     DIMRLMGEQ"
     gene            25438..26556
                     /locus_tag="U1396_000134"
     CDS             25438..26556
                     /locus_tag="U1396_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectin acetylesterase"
                     /protein_id="HEM5341363.1"
                     /translation="MKKVWKIVAAVTVVLALLGFIAYKKTFGWSAPELVAQTPQVNEW
                     YRLSPEGVVDSQGNQAHGLIRTGKEKNKVMVYFFGGGVSINEETASGGTRYFATTTGH
                     QDYVATWGIGSPQEDNPFKDWTMIVLPYGTGDFHAGTQNFSYVDDNGKEQVVHHQGYS
                     NLMSILAAAKPHVGNPDTLLVTGFSAGGFATSLLADDVISHFPTAKNVTVAVDSSFLR
                     HDNWKSIAENVWKTPTSISDRLHSDNIVLDSLVALHEKRGDSVKILFDISYRDGILQQ
                     YQAYIDQGKLADATEESSDHFQKELKKMIQELQSKIDGVGIFIWNYGQDEKTTATQHT
                     TINFSTFFTPMSKDKSVAEWLDDAVNGQVNSYGLELLE"
     gene            26566..27585
                     /locus_tag="U1396_000135"
     CDS             26566..27585
                     /locus_tag="U1396_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5341364.1"
                     /translation="MKKFKKIILWTLGIVASLGIIAYVSVTNHPQLVVGVIQSFMYKE
                     SSPNSYSPLYDPIDGLKENGQYLKSEIAYSKDYPNSFLDITYPDQNLEADRPTLFYFH
                     GGGFFGGSKNMGDPLAASQATYLIDDIVSKGYNVVNVDYALVPDYHFPTPVIQMNQAI
                     AYMKEHAEEYHLNMDNVVLMGSSAGAIMVAQYGSLLANNDYAQLLNIEPSIAKEHVKA
                     LVIDDAPLDYAKFSLSTKLLVGNYVSETIYLSEEEINAYNPISHVNKDYPASFLLGSE
                     YRTDMVSLNKALKQAGVENELVDPLAEEGLEKPHGFVANLRTDPVSAKAFERLITFID
                     DRTKE"
     gene            27807..29090
                     /locus_tag="U1396_000136"
     CDS             27807..29090
                     /locus_tag="U1396_000136"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEM5341365.1"
                     /translation="MSVSFEAKETNRGVLTFTIGQDAIKPELDRVFNKVKKDINLPGF
                     RKGHLPRAVFNQKFGEEALYQDVVNALLPAAYEAAVAEAGLEVVAQPKIDVVSMEKGQ
                     DWTITAEVVTKPEVKLGDYKNLAVSVEATKEVTDEEVDAKIEAARNNLAELVIKEGPA
                     AEGDTVVIDFVGSIDGVEFDGGKGENFSLGLGSGQFIPGFEAQLVGHAAGEEVNVEVT
                     FPEDYQAADLAGKPALFVTKIHEVKAKEVPALDDELAKDIDEEVETLDELKAKYRKEL
                     EAAKEVAFDDAVESAALELAVENAEIVELPEEMIHEEVHRAINEFLGGMQQQGISPDM
                     YFQITGTTREDLHKQYEADAEKRTKTNLVVEAVAKAEGFEATEEEINKEIEDLAATYN
                     MEVAQVRSLLSPEMLKHDIAVKKAVEVITSTATVK"
     gene            29141..30025
                     /locus_tag="U1396_000137"
     CDS             29141..30025
                     /locus_tag="U1396_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5341366.1"
                     /translation="MLQRNSLKNLVRPMQKWENVISVGGVVQVSQGVRITDGEVSHYQ
                     LPWSVLLCLQAIEYDCSFLGSRILLDYLQSNLIISGAFGLFYKEYVIAVGGYDRQTLG
                     EDMELVMKLHYFCKNNNIPYRICYETSAICWSQAPSSIGDLCKQRRRWFLGLYQCLKK
                     YRKMLSRVRFGAVGYFSYAYYMLFEFLAPFIETFGCFVILLSLIYHQLNISFFISLFF
                     LYSAFCSLITFVSFLQRVYSQDLFIGPMDLCKAFLATLFRYFFLHWVLNIVRLTSFIG
                     YKKRKREWGEIKRVKQFV"
     gene            30135..31055
                     /locus_tag="U1396_000138"
     CDS             30135..31055
                     /locus_tag="U1396_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM5341367.1"
                     /translation="MLKKVIRGCFVALFGFVLAACSAQKEASQVQPGMKIVTSFYPIY
                     SLVKEVSGNKNDVRMIGSRQGIHSYEPSAADIKAIYDADVFIYHSRILESWAGRLEPN
                     LQGSSVKVLEASTNLPLTKVPGLEDMEAGQGIDEASLYDPHTWLDPVLVGQEAVSIGE
                     LLAESDPKNADYYRQNAATLEEKAQKLADKYSPIFLKATSKTFVTQHTAFSYTAQRFG
                     LKQLGIAGVSEEEPSPRQLAEIKEFVDTYNVQTIFTEKGASDKLAKALASSTGVDLKV
                     LDPLEADPENNLTYLENLEQVLETLAQELK"
     gene            31089..34244
                     /locus_tag="U1396_000139"
     CDS             31089..34244
                     /locus_tag="U1396_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5341368.1"
                     /translation="MKKKAVVGSVAALVLGMSLCSYQLGRFQAMEEQKNRVSYIEDSQ
                     SVQTTVAEQLTPDQVSAKENIDAEQIVVKITDQGYVTSHGDHFHYYNGKVPFDAIFSE
                     ELVMKDPNYVLQDSHIINEVQDGYVIKVDGKYYLYLKDPSKHKNVRSKEEVERQKGIS
                     SADSKNQAAGNSKDGRYRTDDGYVFNPTDVIEDTGDGFIVPHGDHFHFIPKKDLSATE
                     LKAAQDYWNQKGSVSSASGSQYGDRNNRAQQTTISAGQGQDLASLLAQLDATPLSQRH
                     VEADGLVFDPRTITKKTAAGVIVPHGDHYHFIPYSQMSPLEEKISRMIGVNGAGVSSG
                     AQASHSQHTPTQPNRPVTPIGTVTTQPVSPTQPVLPTQPKQSTGKVVSYMGRQIPAYG
                     KGLDGKAYFTSDGYTFSKDSITSVDDQGLIASHGDHFHYVGFGELEDFEIKQVEEWVN
                     EKAGKQVPPKTSEQVGNDAKPTKPSQGNDSKPVKPIQEENRPAFEYKQVTAKRKLAGK
                     VVYEMEVGGKTYTYGRDELDLMKISFAELTLAEKDKQYIFDIAPLAEGDLKPAMLVGM
                     DQIPMKGANATYDTGQSFIIPHIDHIHVLPYTWLSKEQIATIRYIMQHPEIRPSAWTT
                     SGHGDGEATDLVPPILNATPKANRLGLKNWQIIHTAEEVMDARAKGKFATNDGYIFSA
                     EDVLDPASFVFSQAFSLPRATGGSLRSISKKDLSKEELEAVQTLLDKRDAEELAQNVT
                     PIEKRAGLKNWQIVHSAEELAEAKAAGKYTTKDGYIFDPADLLDPKVKIGTDNYRIPR
                     VITDGYRRINKSDLNYLSELIPAEAMVAQREKSNSSSPSTPAPTETGASAGETTKPEQ
                     PQVAKETAEEIYNRVEAKKVVPFEALTYNAGYATEVRNGTLVIPHQDHYHYVSFKWFD
                     QGSARSPEGYSLEDFLATVKYYMTNPQERPVSDDGWGVFTPNTPSESTEETETEESDE
                     EIISEETEEIDEFTEELKRRAEEFGMDFKTFEQSLVTLSDRYKVSFEAFEYDAASKVV
                     RLVDKDGVKRTISLPSLEEQV"
BASE COUNT         9972 a         7058 c         8057 g         9179 t
ORIGIN      
        1 ttcccaaact gttttggatg agtattttac catgatggcg gtggtgtcgt cggatgagaa
       61 gaaagatttc accaagcttc gtgcagaact agaagccttt ggtcaaggtt tgaacgtgaa
      121 aatcaacatt caaagtgcag ccatttttga tgctatgcac aacttgtaag gagagatttc
      181 atggatatta gacaggttag agaaaccatt gaaatgattg aggagcagaa tttcgatatt
      241 cggaccatca ccatgggaat ttccctcttg gactgtattg atgcggatat tgaaaaagct
      301 gcggagaaag tgtataccaa gattgtcacc aaggccaaga acttggtagc agtcggcgat
      361 gagattgcgg cagagctggg gattcctgtt gttaacaaac gggtgtcggt gacgcctatt
      421 gccttgattg gtgcggcgac ggatgccacg gattaccttc ccctagctca tgccttggac
      481 aaggcggctc atgagatcgg aattgatttt atcgggggct tttcagctct cgttcaaaag
      541 ggctaccaaa aaggagatga aatcctcatc aactctattc cgcaggcatt ggcccaaacg
      601 acaaaagtct gctcgtcggt caacatcggc tcgactaaga cgggtatcaa tatgacggct
      661 gtgcgggaca tggggcggat catcaaggag acggcggagg cttctgatat gggggctgcc
      721 aagttggtgg tctttgccaa tgcggtcgag gacaatccct ttatggcggg tgccttccat
      781 ggtgtcggtg aggcggatgt ggtcattaat gtcggcgtgt ctggacctgg tgtggtcaag
      841 cgtgcccttg aaaaagtgcg tggcgagagc tttgatgtgg tggcggagac cgtcaagaag
      901 accgccttca agattacccg tatcggtcag ttggtaggaa atatggccag cgaacgcctg
      961 ggtgtcaagt tcggtatcgt ggacctgtcc cttgctccaa cgccagcggt tggcgactca
     1021 gtggcacgag ttttggagga aatgggctta gaaaccgttg gtacgcacgg aacgactgct
     1081 gcccttgctc tgctcaatga cgcagtgaaa aagggtgggg tcatggcttg taaccaggtc
     1141 ggtggcttgt caggtgcctt catccctgtg tctgaggacg agggcatgat agctgcggtg
     1201 caaaatggct cccttaacct tgaaaaatta gaagctatga cggctatctg ttctgttggt
     1261 ttggacatga ttgctattcc agaaacaaca cctgctgaaa ccattgcagc tatgattgcg
     1321 gatgaagcgg ccattggggt tatcaaccag aaaacgactg cggtccgcat tattccgctt
     1381 ggaaaagaag gggacatgat cgaatttggc ggccttctgg gaacagcgcc agtcatgaag
     1441 gtcaatcagg cttcttctgc ggactttatc aaccgtggcg gacaaattcc agcaccgatt
     1501 cacagcttta agaactaaaa aacgtagacc gattgccaca agcagtcggt tttttgttat
     1561 actaatagta agaaatgaca aggagaaaaa cgaatggcag atgtaagatt atatatttct
     1621 cgtcacggga aaaccatgtt taataccatt gggcgcgtgc agggctggtg tgatacgccg
     1681 ctgaccaagg ctggtgagga agggattcgt gaattgggct tggggctcaa ggatgcgggc
     1741 cttgaattta aactagccgt gtccagtgac ctgggtcgaa ccgttcagac catgaccatc
     1801 gcccagcgtg agttggggat tttgggaaaa atcccttact accaagacaa gcgtatccgt
     1861 gaatggtgtt tcggtagttt tgaaggcatg tacgatgccg agcttttcca aggtgtcctg
     1921 cctcgtttga aagggacagt tgatgcgaca ggcatgactt tttcggaaat cgcagcaggt
     1981 attcaagaag cagacaccgc tggctgggca gaatcgtggg aggtcttgag taaccgtatc
     2041 ttgacaggtt ttgaggctat tgcccaagat ttggaaaaac agggcggtgg caatgctctt
     2101 gtggttagtc acggcatgac cattgccacc ctggctcatc tgttagagcc agagcgtggt
     2161 gctaatatct ttctcgataa cggctcaatc accgtcctca aatacgaaaa tggcaagctt
     2221 ttaattgaag cagttggcga cctatcctac cgaaaacgtg gagcagaatt gattgcccaa
     2281 gggaaataaa gatatgaaat cagggatatt ctctgatttt tttgattgaa gtagggaagt
     2341 aactaggtcc tcagactgat ttttagcact ctaggtaaaa gagtgctaat tttttgtctt
     2401 tttctcttga caatccattt tttcggcgta taatgggagt atatagttta gcactcgtca
     2461 tacgagagtg ctaaagctaa aaatcaatcg tgttcatgaa aggagcggag atgattaccc
     2521 aacgtcaaaa tgatattttg aatctgattg ttgaattatt tacgcgccat catgagccag
     2581 ttggttccaa ggccttgcag gaaatgattg cttcaagttc ggctaccatt cgcaatgaca
     2641 tggccaagct agagcaactg ggcttgctag aaaaggctca cacttcaagt ggtcggatgc
     2701 ccagtcgggc tggttttcaa tattttgtca accattcgct taatctggaa tatatcgatg
     2761 aagaagatgt ttatcaagtg gttaaggcct tcgactttga agccttcaag ctggaggaca
     2821 tcttggagcg ggcaagtcag gtcctagcgg atttgacagg ctacacctcg gtcattttag
     2881 atgtggagcc gaccagtcag cagctcacct cctttgacat cgtgcaactc agtagccacg
     2941 atgctctggc agtcttgacc ttggaccagt ctaaacctgt caccgttcag tttgccattc
     3001 ccaagaactt tttgaccagg gacttggaag tgctcaaacg cctggtggat gaacgcttcg
     3061 ttggacagac ggtcttggca atccattaca agctgcggac ggagattccc caggtggtgc
     3121 aacgttactt taccacgacg gacaatgtct tggatctcat ggactacatc ttttccaatc
     3181 ttttccaaga atcggtcttc atcagtggaa aagttgcctc gctgacctat ggcaatcttg
     3241 ctacctacca gctcttggat aatccgcagg tgcttgctag tgagttgcgg cagggcttgg
     3301 ctcccaacca gcagactagt atttccgtgg cggaacatcg agaacctgct cttgcagatg
     3361 tgacggtcat tcatcatcgc tttcctatcc cctatcgggg catggcccag atgagtttgc
     3421 tcggtcctgt taatatgaac taccgcaggc agatgagctt aatcaacatc atcagccgcg
     3481 tcctatttat gaaattaacc gattattacc gttatttgag cagtaatcat tatgaggtaa
     3541 attaagatgt gagggcgtga aggaaacgat tgaaaaatag gctgaaacag tccactggac
     3601 tatttcactt ttctgagttt ctagcccgaa ctcaatttat tattgttcaa agtaataata
     3661 gaaaatgaag aggtgaacaa tttgtcagaa gaaattaaaa acgaagaaat cgtagaagag
     3721 gttgaaacaa cagaagaagt tgtggagaca cctgaaaaat cggaattgga tttggcaaat
     3781 gagcgtgcag aggaatttga aaacaagtac ctccgtgccc acgctgaaat gcaaaatatc
     3841 caacgccgtg ccaatgagga acgccaaact attcaacgct accgttcgca agacttggcc
     3901 aagaaaatct tgccaagttt ggataacttg gaacgtgccc ttcaagttga aggcttgaca
     3961 gaagatgtca aaaaaggctt ggaaatggta caagaaagct tgattcaagc cctcaaagaa
     4021 gaaggggtgg aggaagtcgc aacagatgtc tttgacccaa atcttcacat ggctattcaa
     4081 acagtcccag ctacagacga ttgtccagca gaacacattg cacaagtctt ccaaaaaggc
     4141 tacaagctgc atgaacgtct gttgagaccg gctatggtag tcgtatcaga gtagtcgctc
     4201 tgctatttcc cgccccccca aaaaagaatc ctgaccgaga tgtcgttaaa ctacttgaaa
     4261 agaaagtaaa ttaaaaagag gtaacaaaca tgtctaaaat tatcggtatt gacttaggta
     4321 caacaaactc agcagttgca gttcttgaag gaactgaatc aaaaatcatc gcaaacccag
     4381 aaggaaaccg cacaactccg tctgttgtgt ctttcaaaaa tggtgaaatc attgttggtg
     4441 atgcggcaaa acgccaagca gtaaccaacc cagataccat catctctatc aaatcaaaaa
     4501 tgggaacttc tgaaaaagtt tctgcaaatg gcaaagaata cacaccacaa gaaatctcag
     4561 ctatgatcct tcaatacttg aaaggctacg ctgaagagta ccttggtgaa aaagtaacta
     4621 aagccgttat cacggttcct gcttacttca acgatgctca acgtcaagca accaaagacg
     4681 ctggtaaaat cgctggtctt gaagtagaac gtatcgtcaa cgaaccaact gcagcagccc
     4741 ttgcttatgg tttggacaag actgacaaag acgagaaaat cttggtattc gaccttggtg
     4801 gaggtacttt cgacgtatct atccttgaac ttggtgacgg tgtcttcgac gtacttgcaa
     4861 cagcaggtga taacaagctc ggtggtgacg actttgacca aaagattatc gaccacatgg
     4921 tagcagaatt caagaaagaa aacggtatcg acttgtcagc tgacaaaatg gctcttcaac
     4981 gtttgaaaga tgcggctgaa aaagctaaga aagacctttc tggtgtaacg tcaactcaaa
     5041 tcagcttgcc gttcatcact gcaggtgcag ctggtccgct tcacttggaa atgactttga
     5101 cacgtgcgaa atttgacgaa ttgacttacg accttgtaga acgtacaaaa attcctgttc
     5161 gtcaagctct ttcagatgca ggtctcagct tgtcagaaat cgacgaagtc atccttgttg
     5221 gtggttcaac tcgtatccca gccgttgtgg aagctgttaa ggctgaaact ggtaaagagc
     5281 caaacaaatc tgttaaccct gacgaagtgg ttgccatggg tgcagcaatc caaggtggtg
     5341 tcatcactgg tgatgtcaaa gacgttgtcc tccttgacgt aactccattg tcacttggta
     5401 tcgaaacaat gggtggcgtc tttacaaaac tcattgaccg taacacaact atcccaactt
     5461 ctaaatcaca agtcttctca actgcggcag acaaccagcc agctgttgat atccacgtgc
     5521 ttcaaggtga gcgtccaatg gccgcagaca acaagactct tggtcgcttc caattgactg
     5581 acatccctgc agcacctcgt ggtattccac aaatcgaagt aacattcgac atcgacaaga
     5641 acggtatcgt ttctgtaaaa gctaaagacc ttggtacgca aaaagagcaa actatcgtta
     5701 tccaatcaaa ctcaggtttg acagatgaag aaatcgaccg catgatgaaa gatgcagaag
     5761 caaacgctga agcagataag aaacgtaagg aagaagttga ccttcgtaac gatgttgacc
     5821 aagcaatctt tgcgactgag aaaactctga aagaaactga aggcaaaggc ttcgacgcag
     5881 agcgtgacca agctcaagta gctcttgatg agttgaaagc agcccaagaa gctaacaact
     5941 tggacgacat gaaggctaaa cttgaaaacc tcaacgaaaa agcccaagcc cttgcagtga
     6001 aactctacga gcaagccgca gcagcacaac aagcagccgc aggccaagaa ggtgcccaaa
     6061 cagctaacaa cgcaggcgat gatgttgtag acggcgagtt tacggaaaag taaaatagtc
     6121 ctgtggacta ttttagcccg tgagccagaa atgagaaacg agcggttgga ctgggagacc
     6181 tttttatcct gacttcttga aaattagtag gaagtcggtt aaggttctta gctcgaactc
     6241 aattcttatc ttcctgagaa tagaaatcat tcgtcaataa aatttccaat cacagaggtt
     6301 gcaacccagc ctctgttttt gggtaaatac ccttctaact tttacagaaa ggaaagtgtt
     6361 tgtaactgaa cacgggctac tttctaattt tcaaagaaag gaatacaagt tcgtttattc
     6421 gaacacaggc taaaaaccta gtgaaaaaga taaacctcct agtgtgtttt acacactgcg
     6481 tcagtttcct attttcactt ttccaaaact atgatagaaa ggaaagtgtt cgtaatcgaa
     6541 cacgggctac ggactgtgcc aaaaagatag tttttcctag gacggtgagg tcctgcgtca
     6601 aaactcctat tttggctgtg tccgctttac gcccttagta tcttatatga acaatactga
     6661 attttacgat cgtctggggg tttctaagaa tgcttcgcca gacgagatta agaaggctta
     6721 tcggaagctt tcgaaaaaat accatccaga tattaataag gatccgggtg cggaggataa
     6781 atacaaggag gtccaggagg cttatgagac tctgagcgac cctcaaaaac gttctgccta
     6841 tgaccagtat ggtcctgctg gtgccaatgg aggcttcggc ggaggagcag gtggctttgg
     6901 tggtttcgac ggagcaggtt tcggtggctt tgaagacatt ttctctagct tctttggtgg
     6961 aggtggtgcg acgcgcaatc ctaatgcacc tcgtcaaggg gatgacttgc aatatgcggt
     7021 caatttgaaa tttgaagaag cgatttttgg tgtggaacgt gaagtttcct ataaccgtga
     7081 ggcaacttgt cgaacctgta caggttccgg tgccaaacct ggaacaagtc cggtaacctg
     7141 tgggcgttgt catggttctg gagtgatcaa tgtggacacc caaactccac ttggaaccat
     7201 gcgtcgtcaa atgacctgtg atgtctgtca tggtcgcgga aaacaaatta aagatccatg
     7261 tgcaacctgt catggaactg gtcatgaaaa acaagcccat acggtaacgg ttaaggtgcc
     7321 agctggtgtt gagactggtc aacgtattcg cttggcaggt caaggtgaag ctggtttcaa
     7381 tggaggtcca tacggagatc tctacgttgt cattcaggtc caaccttcag acaagtttga
     7441 acgtgaagga accactattc actataaact gaacctcaac tttgtccaag cagcacttgg
     7501 agatacagtt catgtgccaa cagttcacgg tgatgtggat atggtcattc ctgaaggtac
     7561 tcagactggt aagaccttcc gactcaaagg aaaaggtgca ccaagtgttc gtggtggagc
     7621 tattggtgat caatatgtca cagtaaatat cgtcactccg acaggtttga atgaccgcca
     7681 aaaagcagct cttaaagaat ttgcggcagc tggaaatatt gatgtcaaac cccataaaaa
     7741 aggatttttt gacaaggtaa aagatgcctt tgaggattta taattctaag atgagactgg
     7801 gcaaaaagcc caggaccact actcagagtt cgtttcaaca tctcagcgca gtggttgatt
     7861 ggcagatttg ttcgtgtttt gcactccaaa tctggcctaa tcaactgtgc gggggtggga
     7921 agacgaactc tttttatctt ggtcgagttc tttcccactc ccctttcttt ttcagaaaat
     7981 cctctgggca ttttttccga cgcatcacag gctctgtgtt aaaataagat atagtaattt
     8041 gaaagagaac gcttacgaat gaaatcttgg gttgagaatg tgactataaa gaaatacgaa
     8101 gatcggtctg gtttgacggg tttgaaacag gggccactgg tgtggactga ggtctttttg
     8161 cgcgaggtca atcgtcagtc caatacaggg attttacatt tttggcccat ggaccaaacg
     8221 gtcattctgg ggatgatgga cagtcaggtt gcccagctgg acaagggctt agccagtatt
     8281 ggtcaggcag gctacagtcc tattattcgg agtttgggcg gtttggcagt cgttgcggat
     8341 gacgggattt taaatgtcac tctgattttt cccaatcctt ctggtcacaa ggttgatttg
     8401 cgggagtctt atcaggtcat ggtggatttg attgcccagg cgctttcaga ttttcccttc
     8461 gaggtggtca gtggtgaggt ggcaacttcc tactgccctg gaacctacga ccttagtatt
     8521 aaggggcgga agtttgctgg attggctcag cggatttacc aagaggctat tgccatttct
     8581 gcctatatca gtgtatcagg caatcaagtc aaacgtgggc aagtggtggc tgatttttat
     8641 gcggcaagtt ttgctccaca agaagtatcg gacagatttc cgcaagtaaa tccgaattcg
     8701 atggccaatc tgtcagactt ggtcgctcag gatttgacga tggaggatat gaaaatacga
     8761 atcgagcatg tgttgattga aaatggggct tttctgacca ccttttatcc ttcgtcggac
     8821 aacatggctg attttatggc gctcggaaag accatcaagc agtctatgga aaaatatggt
     8881 atctaggaga ttcttatgac atggaaagat gcgacagcca tggctcaggc tgtcaatcaa
     8941 aaacaggttt ctgccaagga attggtgcaa gaaaccattg acaggattga aaagctcaat
     9001 cccaccctca atgcggttgt cagcaagcag tatgaagagg ccttgaaaga agctgaaaaa
     9061 gaagactacc ttggcaagcc atttgctgga gttcctttct tgttgaagga tctggggcaa
     9121 aatgaaaagg ggcagccatc ttctgctggt tctcgcctgc ttgctggtcg accagcaggc
     9181 cataccgata cctatgtcca acgcttgaag gacttgggtt tcatcattgt cggtcgaact
     9241 aacacgccag aattcggctt caaaaatatc tcagatgcca gcctgcacgg tcctgtcaag
     9301 cttcccttag atcctagccg caatgctggt ggatcaagtg gtggtgcagc tgcagcactg
     9361 gcttcaggca tggtctctat tgctgcggca tcggatggtg gtgggtctat tcgcatccca
     9421 gcctccttca atggcttgat cgggctcaaa accagtcgtg gtcggattcc agttggacct
     9481 aagtcttatc gtggctggca gggagcatct gtcaattttg ccctgaccaa gtctgtccgt
     9541 gacacccagc gtctgctcta tcattttcag gactaccagc tggaagcccc ctttcccctt
     9601 gccaagctga gcgaagaaga ggtgtttgga aagttgtctc gccccctaaa aatcgcctac
     9661 tataccaaat ctccagtagg gagcaaggtc agtcctgaag cggtagaagc ggttcaaaaa
     9721 gcctgtcatc acttggcaaa tttggggcat gaagttgtgg aattatcaga atatcctctg
     9781 gatggagtgg ccctgatgaa atccttctac ctgatgaaca gcgtggacac ggcccagatg
     9841 tttgacgaaa tcgaagcggc ttttgggcgc cagatgaccc tggatgacat ggaagtcatg
     9901 tcctgggcta tttaccaaag cgggcaaacc attccagcca aattgcactc caaggcccta
     9961 ttggactggg atcagtttgg agccagcatg gcgcgtttcc atgaggaata cgacttgctc
    10021 ctgacgccga cagtggctga tgtagcgccc aagcatggac aatttgacct atcagcagat
    10081 ttgctggacc gcctcaagca gacccagaac tattctatgg aagagcagca agacttgatc
    10141 tggcaaatgt tcgaggacag cctagcccta actcccttta cgcagcaggc caatatttgt
    10201 ggtcagccag ccatttctct ccctacttat gtgcgggctg acggcttacc aatcggcatc
    10261 caattaacag catccaaggg acgagaggat ttactcttgc ggttggcaga tcaaatggag
    10321 gcggcaggtt tactcaactt gtaagggaat tcattttttc agttcaatta tttgccaaaa
    10381 cgttttcaaa atgttaacct gtaaaagttg gtgggttaac accgaaaaag taaaaaagga
    10441 agctatagct tccaaaggag attgttttat gttgaaaaaa gttttggcct cagctctctt
    10501 ggtttctact ttgaccttgg cagcatgttc tagctcaagt tctaatacta gcagttcttc
    10561 tgctgaacag actcaatggg aaaaagtaca agaagcaggt gtcttgaagg ttgcaacacc
    10621 agggaccctt ttcccaactt cttactacaa cgatgctaaa gaattggtcg gatatgaaat
    10681 tgacatgatc aatgaaattg gtaaacgttt gaaattggaa atcgaatatc aagaaatcgg
    10741 tgtggcagaa gcctttacag ctgtggacag tggtaaggtc gatatttctg ttaacaactt
    10801 tgacatgaca gaagcacgta aggaaaagta taacttctct atcccttaca agtattcagt
    10861 tggtggctac atcgttcgtg aagatggttc atcaggaatc gaagcagctg acttgagcga
    10921 ctggactggt aaaaaagctg gtggtggcgc aggtactcag tacatgaaaa ttgctgaaaa
    10981 acaaggagca gagccagtta tctatgacaa cgtaaccaat gatgtctatt tgcgtgatgt
    11041 atcaacaggt cgtacagact tcattccaaa cgactactat acacaagtca tggccatcaa
    11101 atgggcaaat gctaacttcc cagatatcaa agtgaagatg ggtgatgcaa aatacaatcc
    11161 aactgaacaa ggtattgtca tgagcaaggc tgacacaagc ttgaaagaaa aaattgacga
    11221 agctcttgaa gcgatgaaag ctgacggaac tttgaaggca atttctgaga aatactatgc
    11281 gggacaagat ttgacagtcc ctgttgaaaa tgcagaccaa ttgccagtta tcgaagttga
    11341 ataagacctc gtaacaaatt aaatgcatct tgtatagact ttgtcagtca caggctggca
    11401 aggtctatct ggtttttagg aaagaggaga agatatggat attaactggc aggcagtttt
    11461 taatgcagat attgcaagag aggctattcc acagattttg gagggacttc cctacactct
    11521 gtccctatcc ctaattggtt ttgccttggg gactttctgt ggattttttg tagccttcat
    11581 gcggatgtct aagtttggcc ccttgcgttg gttggctatg gcccatattt ctctcatgcg
    11641 tggaattccc ctcatggtcc ttctcttttt catctatttt ggattgcctt tcatggggct
    11701 acaactagat gctatctccg catctattat cgcctttacc tccatgtcca gtgcctacat
    11761 ttctgaaatt attcgtgcat ctctttcggc cattgataag ggacaatggg aggcagcgcg
    11821 ttccctgggc ttgcggacca atgtgattta cagaaaaatc attattcccc aagcctttcg
    11881 cattgccctt ccaccgctga gcaatgtcct cttagacatg gtcaaaagta cctctctgac
    11941 agccatgatt acggtaccag agattttcaa taaggccaag atagtcggcg gagccaagtc
    12001 tgattacatg acagtttata tctgtgttgc cttgatatat tgggccatct gcactctcta
    12061 cgcctttggt cagctcaggt tagaaaaacg cctggcgact tattaaaaaa ttcctcggtt
    12121 cttttgaatc gaggaatttt ttctagtttg gatagaacac aagaatagcg gaagtggaag
    12181 aggatttggt gtattcaaaa tcttccatat cttgcacgga taggctttga acagtgaagt
    12241 aagtttgatg tttgtagcgg atattaaaat cattgctact accagcatcg atagttgaga
    12301 agctcttttt attcagagta aactcttctt ttgagagttt ctcgagattt tcttttgttg
    12361 ccattaaata gaccttgcca gagaaagaag attcaagaga gaactctcct ttggatgcag
    12421 cgatttcgac aatttgctga aagctctcaa tctcagccag acgttcatct gtttttagag
    12481 ctttttctgt ttcaatggaa gctgctgtta gctcgttttg catttcttta ttaacttctg
    12541 aagtgacaga gtgacaagca cttaagcaag gtatcatcat gcagagtgca atgagggaaa
    12601 tatacttttt catcatgggc tcctttatat aatttcatca ttttcagctt gtaaaagcac
    12661 acctttttcc aacaccatct ttgctagtag tgcaataata atcagcacac catttatgaa
    12721 gtagtcacta agtgaaaaat catataaatc acttacattc tctaaatcta ggtaagatag
    12781 gaaaaaagca cttgcaaatt gtatgctcgt ccatatgatt aaggttccta aaattatctt
    12841 tgtatagact acattttcag ttgagaaaat agttcctgtt tgaaagttga tgagcaattt
    12901 tttgagtatg gtggccatgt agataaagca ggctaccaat aggatactta tgattagaat
    12961 aataacaatg ataggcaagg ggacgtctaa ttgtagacta ttttgaatag gtttcccgcc
    13021 tataagtaga ataagaagtg ccaacattat cagtcccgtt aaggcaatca atccatgacg
    13081 aataaacgtt agcaactgta tgacgatgtt gaaaaatatc tttttgttca tgctattccc
    13141 cctccttcac atattccaaa atatctcctg gttggcagtc taggatgcgg cagatgctca
    13201 tcagggtatt gaaacgaatc ccttttgcct tgcctgtctt gagaatggac agattggctt
    13261 cggtgatgcc gacttgctcc gccaagtcct tggaagtcat ttgtcggtct ttgaggacct
    13321 tgtctaggtt tacgcgaatc atttccatat cagataaact cgctgttctc ggtttcaagt
    13381 tgttgccctt tttgtactaa ggtccagaca aaataagtca ggaagataaa gagagcattg
    13441 aggatgaaat ctgaccaacg cagattgagg aagttgtttg gtccagcagc atttgtcaag
    13501 gtgatcaagc tggttaggca aaattgccca gcagtcaaga cgagcaaact gatgaagagt
    13561 ttctgataaa gttccagact agctgaagcg aaataatctt cttccagaag caatttacat
    13621 aacttttgaa tcaagtgggc aatgtgactg agtaccgcca agatgattaa gattaatcca
    13681 cttgttaaaa ggatgagcca aacactaatc tggtcaatgg gtttgttaaa ggtgtattcc
    13741 caagagccta tcacaaatga gtcgcctcgg aaaccagcca agctaaagaa aatatagcct
    13801 gcaattaata aatagaagaa atagcgaaca caaccagcta acaatcctgc tgttttgagt
    13861 agattggttt tcatagcaaa cctccaatta ttattgtttt atgataatat tatctgtaaa
    13921 attattataa aacaataatt tttagaatgc aagcgttttt ttaaaaaaag aataataaga
    13981 aaaccgccaa gtagctggcg gtttgaagct atttaaaata cagtaatctc aacccattca
    14041 aaatcaccaa aatcgttgat ccttcgtggc ccaccacacc gagtgggagg ttgatagact
    14101 ggaagaggtt ggaaacgata agaagagcaa tgacggacag agcaaagatg atgttctgct
    14161 tgatgatgcc ccgcattttc ttagagagac gaatggagta aggaattctc gtcaggtctt
    14221 ccatgagtac gatgtcagct gactccatag cgatgtccgt accgcttccc atagcatagc
    14281 tgacattggc ttgagcaagg gcaggagcat cgttgatacc gtctcccacc ataccgactg
    14341 acgcaaactc ggtttgcagt ttttggataa cagcagcctt atccgtcggc agacagttgg
    14401 caatcacacg gtcaataccg acctgactcg ccacgtaacg agccgtcttt tcttggtcac
    14461 ccgtcaagag aattggcgtc acgcccatct ctttcaactg ggcaattagc tgcttgctct
    14521 cgggtttcaa actatcttcc accatgaaga ttgccaccag cacatcattt tggctgacat
    14581 agaccagggt tttcccagta ctttccgcct catcgatctg tgccagcaag ccagcagaca
    14641 ggggactcac caggctgtcc accacaaatc ctgccttacc tattttccag ctgtcgccct
    14701 catagccagc caccaagcct tttccggtca cgtcttctag gctttggagg gcaatagcag
    14761 agctgtcagc cgtataggtc atgagagcct gagcgattgg gtggcttgat tgtttttcaa
    14821 ctgcctgaac aacttccctg attagttttt catcgccaag ataggtcgcg tctacaactt
    14881 caggtttacc aatggtcagg gtgcccgtct tgtcaaagac gatggcttct agattggcga
    14941 tgttatccgc aatatcacca cccttgataa tcataccctt gcgtgccgca cggctgatag
    15001 cagaaagtgt cgccggcgaa gaagaagcta cgagggcgca tggagaagcg atggtcaaga
    15061 gaatcatgcc acggtagaag gcagttaacc agtcccagca cagagcaaaa tgagcaaaga
    15121 gaatgaagag tggtaccacc accaagacaa tcttgacata ggtatcttcc atattttcaa
    15181 tgaaagtcgc tgtttttgat ttggattctt gggcgttttc aaccatttgg acgattttat
    15241 cgaagagggc atcgcctttt tcagccgtaa cttgtacggt cacagttgga ccttggttaa
    15301 tggttccgcc gataacagca gcgccagtca ttttctccgc agggagcggc tcgcctgtaa
    15361 tcatggattc gtcaaagatg gattgcggac tgatgagggt agcatccagt gggaccgtgt
    15421 cacccttgcg gacttgcagg aggtcgccga tgcggatggc tgcggtgtct aagacagtaa
    15481 tgtcaccatt ttcctcgatt ttgcgagccg ttggaggcgt catgttcatc agagctgcaa
    15541 tagcattctt gcttttttcc atggctaatt cttccagagt agaagaaagg gagaagatga
    15601 agatgagtag agccccttcc atccagtagc caattagacc agagccgata gcagctaaaa
    15661 tcatgagcag gtcgacagac aggtgcttgt cgaaaatcag ctcagaaatg ccttccttgg
    15721 ctgactggta gcccccgatg acaaaggctg agatgaagag gataggagcc catccctgtc
    15781 cagtctgaaa cagaaggata cctattagaa tgagcgccaa gcagagagcg gtcgtgatga
    15841 tgttgctgtg ttgtttgagg ttggttacga gtgtcatagt ttgctcttcc ttatttagaa
    15901 ttattatcat ttaactaagt taattataac aattataaaa agaaagtcaa ggtatttata
    15961 ataattctaa ataagactgt tctgataatt caaaggaaaa taaaaaaagc gacagaaagc
    16021 cgctttgata ttcgtctttt agccctgaca atcaggacaa atgccgtaga tggatagcac
    16081 ctcttttgta attttgtaac cagtttgggt atgagcttcc ttcttcaagc tcgggatttc
    16141 tacatccatg aaatcagtga tttttccaca gacttcacaa ataacattga ggtgctcgtg
    16201 ccccataaag tcgtaataag tagtattatc attggtctgt ttcaatttgg tcacgaaccc
    16261 ttcttccaat agaagtttga ggttgttgta aacagtcgcc agactcatgt tggggtagtt
    16321 aggtagtaga tcttgataaa tcatttcagc actagggtgg tcatcgcttt cgataatgta
    16381 ggcaacgact gcttttctag tttcggtaat gcgcacaccc ttttctttta gatgttggat
    16441 gacgtgttca aaagcagttt ggttttctgc attgaagtga gaatggagtt ccatagtttc
    16501 ctcctttcgt tattatttta taaaaattct aagatacaat attcagtttc attatagtgt
    16561 atttgggagg ttgtgtcaat tttgagacag gaaatctgtc ataggacagt ttggtgtctc
    16621 atgacttgtt tacatacttt tcctgtgcta caatcaaaac atgacaagat ataaggcaat
    16681 tatttcctac gacggacatg atttttctgg ttttcagcgc cagacccatg cccgtacagt
    16741 tcaggaagaa atcgaaaaaa cgttagtaag attgaatagt ggtcagccag taaccgttca
    16801 tggtgcaggt cgtacagatg caggggtaca cgcctacggt caggttatac actttgactt
    16861 ggctggcagt cgagatgtgg agaagctccg ctttgccctg gatacccaaa cccctgagga
    16921 tattgatgtg gtccaggtgg agcaggtggc ggatgatttt cattgccgct atgccaagca
    16981 cagcaagacc tatgagtttc tggtggatat cgggcgaccc aagaatccta tgatgcgcca
    17041 ctatgcgacc ttttatcctt atgatttgga cttgagtttg atagaagaag ccattcagga
    17101 cttggtgggg acccatgact ttacaggctt tacggcttcg gggacatcgg ttgaggacaa
    17161 ggtgcggacc attaaggcgg caagcatgga atatgaccag cggcggcagt tcttgatttt
    17221 tacattttca ggcaatggtt ttttgtacaa gcaggtgcgg aatatggtcg ggaccttact
    17281 gaaaattggt aacggtcgca tgcctgtggg acagattaag cggattttag cagaaaagga
    17341 tcgtggtttg gcgggaccga ctgcggcagg caatggcctc tatctaaagg agattatcta
    17401 tgaagactaa gtatattttg gcgctttcgg gcaacgatat tttcagcggt ggcgggctcc
    17461 acgcagatct gacaacctac acagtccatg gtctgcatgg ctttgtggcg gtgacttgct
    17521 tgacagctat gacggaaaaa ggttttgagg tcattccgac agatgcggcg gtgtttgccc
    17581 agcaactggc tagtttgaag gatgtgccct tttctgcgat taagatcggc ttgcttccta
    17641 cggtggacat agcagagcag gctttggcgt ttgtcaaggc tcaccaggag attcctgtgg
    17701 tcttggatcc ggtcttggtc tgcaaggaaa cgcacgatac cgaggtcagc cagttgagag
    17761 atgaactctt gaaattcctt ccttatgtca gcattatcac accaaatctg gcagaagctc
    17821 agctattact ccaaaaggat atcgaaacgg tggaagagat gaagcaggcg gcagtggcct
    17881 tgtatgactt gggagccaaa gcggtggtca tcaagggagg caatcgtctg ggtggctcag
    17941 aggcgatcga tgttttctat gacggtcagg aagtggtggt gctccagtcg cctctgctgt
    18001 cagaaaacaa tgtgggggca ggctgtacct ttgcatccag cattgccagt cagcttttgc
    18061 tgggaagaga acctttcgag gcagtcagac tgtccaagga ttttgtctat gcggcgattg
    18121 aaaaatcaga tgattatggg gtgattcaat atgagaaata aaaaaacaca ggaattagta
    18181 ttattagcta tcttaacagc tttgagcttg gtattagcct ttgtttatgt gccaactgca
    18241 actggttttg tcacactctt ggatgttggg gtatatttta cagcctttta cttgggcaag
    18301 aaagagggag cgattgtcgg cggtttggca gggctattga ttgacttctt gctgggctat
    18361 ccccagtggg ctttctttag tttgctcttc cacggggctc aaggttattt tgcgggttgg
    18421 acaggtaaga aacggatttt cggtttagtc ttggcgaccc tctctatggt ggggggctat
    18481 tacctagcat ctcggattta ttttaatgac ctcaaagcca ttgaaagtgt tctaagcaat
    18541 accttgcaaa acacagttgg tttggtagtt ggttacatct tggctcaggc aatagaaaga
    18601 attggtgcag taaatcatgt cattaaggga aattaaagac caaactcagc aagttgtgca
    18661 agaagtccta gaactcagca atcttcaaaa gggacagatt tttgtcctag gattgtcctc
    18721 tagtgaggtc attggtgggc atattggcaa aaattccagt ctggaagttg gtgaggtggt
    18781 tgttgaaacc atcttggaaa tcctggatca aaaaggtatc tatctagctg tccaaggctg
    18841 tgaacacctc aatcgtgcct tgctggtgga gcgggaattg gcaatccaga aggatttgga
    18901 aatagtcaat gtcctgccaa cccttcatgc aggtggttct ggtcagttgg cggccttcaa
    18961 gtatatgaag gacccggtgg aagtcgagtt tatcaccgct caggctggtg tagacatcgg
    19021 cgacacagct atcggcatgc acatcaagca tgtccaagtt ccgattagac ctagcctgcg
    19081 tgaaattgga caggcccatg tcacagctct tgccagccga ccaaaactaa tcggcggagt
    19141 ccgagcagcc tatcaggaag ataagatacg gaaaggttca taatgaaaga atttacagtc
    19201 aaggatttag tgtggacccg tccaccgaga caattcacta tttcagatga agaaattacc
    19261 attaccaccc acccccagac ggatttgtgg cagaagacct attaccattt tgtgaatgac
    19321 aatgctcctg tcttgcaaat ggaaacggag gaggactatt tttcctttac tgtgaagacg
    19381 gattttgcgg gtagtcatac tcgatttgac cagtgtggaa ttgtccttta tcaagattcg
    19441 gagaattggc tcaaatgttc gatagaatat gaaaatgatg acttccaaca cttgggaagt
    19501 gtggtgacca atcacggctt ttctgactgg gcaactactg aaatcagttc ccaagtcaaa
    19561 tccatttggt ttaggctcag tcgcagggga gctgattact gttttgaaaa ttccgaagac
    19621 ggtatccact tcaaacaaat gcgggtttgc cattttcatc aagggacggg gaaaatagct
    19681 tttgggctat atgcctgttc gccagaaaac tccagtttta cagctcgctt taccaatatg
    19741 gaattgagcg actgcaaatg gttgccccat gacggacaag agccagatga aatatagtga
    19801 gagtcatagg taagtagtaa cagaaaaata gttgaaactc atattcttcg aaaatcaaaa
    19861 agatccgttg tcaacttgcc ttgaagaact cctgttcaat cttcgccttc gtttcctagg
    19921 cgacttttga ttttcattga gtatcaggaa gtaactttcg actagtaaga gagttacttt
    19981 ttttatcttt tgatccaaat ccttgccaag aagtctggct tgtgataaac ttgctcctgt
    20041 aagtgataca agaacagaaa ggaaaccaga tggatacaaa gttttcagta gcccttcata
    20101 tactgaccat gatcagtgag agcaaggaaa tacttagctc gcaagcctta gctgagagcg
    20161 ttggcaccaa tgccagctac atccgcaagg tgattgcact tttgaaaaat gcaggcttaa
    20221 tcacttcgca ccaagggcga tcaggctacc aattgagcaa gtcccctaag gatattagct
    20281 tattggaaat ctaccttgct acgcaagaag tggagcatat tcgactattt cagatacacc
    20341 agaatgccaa tcttacttgt ccagttgggc agcatataga aggtgcaatg gttcccatct
    20401 tttccagcgt tgaacaagat ctggaaaatc aactcagtcg tcaatcctta gataatgtga
    20461 ttgataatct ctatcaatcc gcacaagaaa cccgaatctg acctcggtca gattttatta
    20521 actcaaacat agacctgtaa ttgatacagg aacaaaccaa agaatagaaa agagtaaacc
    20581 atgaaagcag cacaacacac atcttataat aaaaacaaga tcacccttaa ccttacagaa
    20641 attgctaaac cacaaatcaa acctaaccaa gtccttgtca aagtgaccgc agcaggcgtt
    20701 aacccattgg acaacatgat ttctcgcgga gatgtgaaat tgattgttcc ttataaattg
    20761 ccacaaacgg ctggaaatga actagttggc ttgattgaag aagtaggttc aagcgtgacg
    20821 acatttgtag caggtgatcg tgtcttcggc cgtcttccac ttgatagtat cggtgctttt
    20881 gctgagtatg tagcggttga cgctcaggct cttgctaagg ttcctgccta cttgacagat
    20941 gaagaagcgg ctgctgttcc tttgacagcc ttgaccatca tgcaggccct tgacctcatg
    21001 ggtgctgagg caggcaagac catcttcatc tcaggcggaa ctggtggtgt cggcggtatg
    21061 gctattccga ttgccaaagc caagggcttg accgttatca caaatggtga cggtgcaagt
    21121 ggtgaacgtg tcttgaaact cggtgcagac cggtttatcg attacaagac agaagattac
    21181 accaaaacac ttagcaatgt tgactatgtc ttggacacac tcggtggtgc agaaacggag
    21241 aaacaaatgt ccatcatgga aaaaggtgga cagctggttt cccttcgtgc catgccaaat
    21301 ggtgaatttg ccaaacgtat gaatttgcca aaatggaaac aaatcttgtt tggcctagct
    21361 ggtcgttcat ttgacaaaat ggctaagaaa tatggtgttc actaccattt cattttcgta
    21421 gagagcaatg gtcgccagct gcaagaagta gcagacattt tcagcaagct cgaaattaaa
    21481 ccgtcaatcg ataccgttta tccatttgaa gaagtcaacg cagcactgga taaggttgcc
    21541 aacggtcgtt cacgcggaaa aaccgtcctc agtttcaact aaaagataaa atatacaggg
    21601 aaacatcatg tcatatatta caactaaaaa ccaatacatc accgtttcaa acaataaaat
    21661 tgcctaccgt gagctcagca agggcaagtc tgatattcct ttggtcatgc tggttcacct
    21721 agccgcgacc ttggacaact gggatccaaa attactggat ttgctggctg aacagcacca
    21781 tgtaattgtc ctagaccttc ctggcgtagg agctagtcaa ggcaaggtgg ctccgactat
    21841 tccaggaatg gctgagcagg ctgtttccat tatcaaggct ttgggttatg agaaaatcaa
    21901 tttgctgggt ctgtctatgg gtggtttcat tgctcaagaa atcgttcgtc tggatagtca
    21961 gctggtcaac cgtttgattt tagcaggcac aggtcctcgt ggtggttttg aagtcgataa
    22021 ggtgactgga aaaaccttcc gctacatgct gaaggctggt ttggagcgtg tggatccaaa
    22081 acgctacatc ttctacaatc atgatgaggc aggtcgtttg gaggcagaaa aagtcttggg
    22141 tcgtatgggg caaagaagtg ctgctcatgc agacaaggac atgaatgttc caggattttt
    22201 gacccagctg aaagctatca aacgctgggg aagagagccg caagatgata tgacctttat
    22261 cacccaacca actctgatcg tcaacggtga taaggatatg caggttccaa ctgaaaattc
    22321 ctataccatg catgagaaga tcaaaaatag ccaactgatc atctatccaa atgcaggaca
    22381 cggctctatc ttccaaaatg tagaggattt ttcgaaagcc ttactagcct ttttggagga
    22441 aaccaatgcc taaaaccatt ttaatcactg gttcgacgga tggaatcggc aaacacctag
    22501 ccatgaaact agctagtgaa ggccatgaag tgatcttgca cggacgaaat agcgaaaagt
    22561 tccgtgtagc cctcagtgat attcaactaa aaacaggaaa taaaaagatt cacggctatc
    22621 ttgcagattt ttccaagttg gcagatgtct atcgtttcag ccaagaaatt aaacgcgatt
    22681 ttgagcagat tgatgtcttg gtaaacaatg caggagctta ctttggtgat gctcgcgtgg
    22741 caacggcaga aaatatcgag atgaccttta tgctgtctgt ccaagttccc tatatcttga
    22801 cgacggagtt gctgcctttg ctggaaaaag cagtaggtag ggtcattcat acctcttcct
    22861 tcatgcacca ttttgcacaa accagaggct tggattttgg tttagagcag agctattctg
    22921 cagctatggc ttacaataat gccaagctat acaccatttg gctggccatt gctcaggcag
    22981 aggccttaga aaagcaaggt tcatctgtga ctgtcaatgc ctaccatcct ggcttgattg
    23041 cgacaaattt gggcaatgat ggggtcaaac gcaacctgag aagtcggatt cttaccagtc
    23101 tgatgaaacc attttccaag gatttggacc aggggattga aacaggttat tacttaagtt
    23161 tgtcaccaga ggtagctggg cagtcaggtc gctattttgc agagaaaaaa gtggcaaagg
    23221 tcagcctaaa aggctttgat gtgccaaaga gccaagcctt actagcctat cttgataaga
    23281 aaatccaagt attcaaggag agctaccgtg actaagattt tgttagaaaa cctccaactg
    23341 cccaatggtc aggttttaga caatcgcttt ttcaaatccg ccatgagcga aaccatggca
    23401 gatagtcagg gagctccctc agatgacctg attgccttat atgatttttg ggccaagcag
    23461 ggaatgggtg tcctagtgac agggaatatc atggtggacg gccgctacct tggtgagccg
    23521 ggcaatgtgg tccttgattc agacgatcat ctggctcaat ttcggaaatg ggcagccgtt
    23581 gggaaaaaga acggtgtgcc tatctggctc cagctcaatc accctggcaa acagatgtat
    23641 cggtcgatca atcaaactcc gattgcaccc agtgctattc caatttctgg aggttcagct
    23701 tcggcctttc gcccaccgag agaaatgacc gtgtttgaca tcaaagaagc tagagataaa
    23761 tttattgcag caggccttcg ggcaaaagaa gcaggattta caggtgtaca gttacatgct
    23821 gcacatggtt acttgatcaa tcaattcctc tcaccagcag ataatcagcg gacggaccgc
    23881 tatggtggca gtctggacaa tcgcatgcga ttcttggtgg aagtctatca aggtctgcgt
    23941 gacaaagtgg gaccagattt taccatcgcc ttgaaattga atgcttctga ttttaaggaa
    24001 gaaggctttg gttttgaaga ttgtaagcat gtggtgaaaa ccatgtctga cttgggtatc
    24061 gacctgattg aaatttcagg tggcaattat gagacacctg tttttggcag tgagtatgag
    24121 aatggtgctg gatttgtcac ctacgcccta gccttagcgg atttgacttc tgttcctatt
    24181 gtttcaacag gcggtttccg aaaagtcact cagatggagg aggctatcaa ggatggtgtg
    24241 tccatgattg gccttgctag accctttgtc cttcgtccaa gtcttgtcaa tgattaccgt
    24301 caagtcggtg atgtgcaact gacaacgcct cgcctgacaa caggtcttcc aaaactagat
    24361 aaggctcttg gtcccattat cggtgttagt tattacgagg cccagatgaa acgcttggct
    24421 atgggaaaaa gtgtcaccgt cagtcaacat gcctggccct atcttctcca aaccatcaag
    24481 gcacacggtc tgtcagcctt gaaaccgagg aggaagtaga atgatgctaa tcatgacgat
    24541 actaaattaa ttttaaagct acttttacaa tgcgtgtatg agtagcttta ttttcattat
    24601 agatattcga ttgaggagag gttcaagcct aacgccgctt ctcaagattt gtattacagt
    24661 acttgaaatc attattaaaa atatccagag agatgatatt atgcacaaaa aagacttaga
    24721 gtgactgaaa aacagttgcc taagtctttt tgcttggtct ggtcaagaac attgacaagc
    24781 ttgctctatt gctcacccat caaccgcatg atgtcatcag ggctttcctt acagcctcta
    24841 gcaacccagg ttttaagcac tcggaaaaat cctcctacga taaattgcag gtgaaaatca
    24901 tcagtcaagt cccccagcct ttctttgaaa tagcgatcca agacctcctc gagcaagtag
    24961 tccaaatggt tggtagtcaa taagcgaatc ttatcctgct gctcatacca aaagtcaaaa
    25021 aattgccgta aagctagtaa gagatgggca tctgaccaat ccgacaagtc aatctgccgc
    25081 tctgacaacc aggcttgtaa ctccatgttg aaggaccgtt cgagcacctc ttccttattg
    25141 gaaaagtttc ggtaaaaggt cacccgaccg atgccagctc gctctaccaa ctcagataca
    25201 ctgatctttt caaaagattt gtcttccagc aactcccaca aagcctccac gacactctcc
    25261 acaaataacg attctttccg cttcactctt tccatgcgaa acacttcctt tcattatgtt
    25321 tccttttggg caaatagcag agctgggact agtttttcca ctgtccatct gctatactga
    25381 taaaaaacga aacacttgtt tctaaaaaaa taccataaag gacagaaaaa agaaagtatg
    25441 aaaaaagttt ggaaaatagt agcagctgta acagttgttc tagccttgct tggttttatt
    25501 gcctacaaaa agacatttgg ctggtcagct cctgagcttg ttgctcagac cccacaagtg
    25561 aatgaatggt accgcctcag tcccgaaggg gttgtagatt ctcagggcaa tcaggcacac
    25621 ggacttattc ggactggtaa agagaagaat aaggtgatgg tctatttctt cggtggcggg
    25681 gtgagtatta atgaagagac tgctagtggt ggcacacgtt attttgcgac cacaactggc
    25741 catcaagatt atgttgcgac ttggggaatt ggaagtccgc aggaagacaa tccatttaag
    25801 gactggacta tgattgtgct tccgtatggg acaggagatt ttcatgcagg gacccagaac
    25861 ttttcatatg tagacgataa cggaaaagag caagtagtcc atcaccaagg ttattccaat
    25921 ctgatgagta ttttagcagc agccaaaccg cacgttggca atcccgatac acttctagtg
    25981 actggatttt cagctggcgg atttgcgacc tcactgctag cggatgatgt catttctcat
    26041 tttccaacag cgaaaaatgt cacagttgca gtggacagtt cctttttgag acatgataac
    26101 tggaaaagca ttgcggaaaa tgtctggaaa acaccgactt ccattagtga tcgcctgcat
    26161 tcagacaata ttgttttaga tagcttagta gccctccatg agaaacgcgg ggatagcgtt
    26221 aagattttat ttgacatttc ctatcgagat ggaattcttc agcaatatca agcctatatt
    26281 gaccaaggga aactagcaga tgcaacagaa gagagtagtg accactttca aaaagaactt
    26341 aaaaaaatga ttcaagaact gcaatctaag attgatggcg tgggtatttt tatctggaat
    26401 tatgggcaag atgaaaaaac taccgctact cagcacacca ccattaactt ctcaacattc
    26461 tttaccccta tgtctaaaga caagagtgtg gcagaatggc tggatgatgc tgtcaatgga
    26521 caggtaaaca gttatggatt agaactatta gaataggaga acaacatgaa aaaatttaaa
    26581 aaaatcatct tatggaccct tgggattgta gctagtctcg gtatcattgc ttatgtgtct
    26641 gttaccaatc atccgcagtt ggtagtcggt gtcattcaat cgtttatgta caaggagagt
    26701 tcgccgaact cttatagtcc tctttatgat cccattgatg gtttgaaaga gaatggtcag
    26761 tatttaaaaa gtgagattgc ctatagcaag gactacccta acagcttttt agatattacc
    26821 tatccagacc aaaatcttga agctgaccgt ccaaccctct tctatttcca cggtggtgga
    26881 ttctttggag gcagcaagaa tatgggggac cctctggctg ccagccaagc gacctatctc
    26941 attgacgata tcgtttcaaa aggttacaac gttgtcaatg ttgactatgc ccttgttcca
    27001 gactatcatt ttccaacgcc tgtgattcag atgaatcagg ccattgccta catgaaggaa
    27061 cacgctgaag aataccattt gaacatggat aatgtcgtct tgatgggctc atcagcaggt
    27121 gccatcatgg tagcacaata cggtagcctc ttagccaaca atgattacgc tcagctattg
    27181 aacattgaac caagtattgc aaaagaacat gtcaaagctc tggttatcga cgacgctccc
    27241 ttagattacg ccaagtttag cttaagcacg aagctcttgg ttggaaatta tgtttcagaa
    27301 accatttatc taagtgagga agaaatcaat gcctataacc cgatttccca tgtgaacaag
    27361 gactacccag ctagtttcct tctgggaagc gagtatcgga cagatatggt gtcgctcaat
    27421 aaggccttga agcaagcggg agttgaaaat gaattggtcg atcctttagc agaagagggg
    27481 cttgaaaagc ctcatggttt tgtggcgaat ttacgaactg accctgtgtc tgccaaagca
    27541 tttgaacggt tgattacttt tatagacgat agaaccaagg agtagtagga gagtggataa
    27601 gctggaaact gatggggatt tgtccaatca atctgccgct ctgacaacca tgtttgtact
    27661 gagaaagtct acgccgaaaa attccaaatg agaacaataa gtcccagctc tgccatttcc
    27721 caaaagtacg ttataaaatc gttgaaatcc ttgtcaattg tgttataatg aagagtatgc
    27781 aataaaattt taaggagaat gacagaatgt ctgtatcatt tgaagcaaaa gaaacaaacc
    27841 gcggcgtttt gactttcaca atcggtcaag atgctatcaa accagaattg gaccgcgttt
    27901 tcaacaaagt taagaaagat atcaatcttc caggtttccg taaaggtcac ttgccacgtg
    27961 ccgttttcaa ccaaaaattt ggtgaagaag cactttatca agatgttgta aatgcattgt
    28021 taccagcagc ttatgaagca gcggttgcag aagctggtct tgaagtagtt gcacaaccaa
    28081 aaattgacgt tgtgtctatg gaaaaaggtc aagactggac aatcactgcg gaagttgtga
    28141 caaaacctga agtaaaattg ggtgactaca aaaacttggc agtttcagta gaagctacta
    28201 aagaagtaac agatgaagaa gttgatgcaa aaatcgaagc tgcacgcaac aacttggctg
    28261 aattggtcat caaagaagga ccagcagctg aaggcgatac agttgttatc gactttgtag
    28321 gttcaatcga cggcgttgaa tttgacggcg gtaaaggtga gaacttctca cttggacttg
    28381 gttcaggtca attcatccca ggtttcgaag cgcaattggt aggtcacgca gctggtgaag
    28441 aagtaaacgt tgaagtgact ttcccagaag actaccaagc agctgacctt gctggtaaac
    28501 cagccctctt cgtgacaaaa atccacgaag taaaagcaaa agaagttcca gctttggatg
    28561 acgaattggc aaaagacatc gacgaagaag tagaaacact tgatgagttg aaagctaaat
    28621 accgcaaaga attggaagca gcaaaagaag ttgcctttga cgatgcagtt gaatcagcag
    28681 ctcttgaatt ggctgtagaa aacgctgaaa tcgttgaatt gccagaagaa atgattcacg
    28741 aagaagttca ccgtgcaatc aatgaattct tgggtggtat gcaacaacaa ggtatctcac
    28801 cagatatgta cttccaaatc actggtacaa ctcgtgaaga ccttcataaa caatacgaag
    28861 cagatgctga aaaacgtact aagacaaact tggttgttga agcagtggct aaagcagaag
    28921 gtttcgaagc aactgaagaa gaaatcaaca aagaaatcga agacttggca gcaacttata
    28981 atatggaagt ggcacaagta cgtagcttgc tttcaccaga aatgcttaaa cacgacatcg
    29041 ctgtgaagaa agctgtagaa gtaattacaa gcactgcaac tgtaaaataa ttatttggaa
    29101 aactcgactc tagtcgggtt ttttgtttaa tcatctttcg atgttacaaa gaaactctct
    29161 gaaaaacctt gtccgtccca tgcagaaatg ggagaatgtc atatctgttg gtggagtcgt
    29221 ccaagtttca caaggggtac gaataactga cggagaggtc agtcattacc agttgccgtg
    29281 gtcggtgctc ctatgtttac aagctatcga atatgactgt tcttttttag ggagtagaat
    29341 tttattggac tatttgcaat ccaatctcat catatcaggt gcctttgggt tattttacaa
    29401 ggagtatgtc atagcagttg ggggttatga taggcagaca ctgggagaag atatggagct
    29461 agtcatgaaa ttgcattatt tctgtaaaaa taacaatatt ccttatcgaa tctgctatga
    29521 aaccagcgcc atttgttgga gtcaagcacc gagctctatc ggtgatttat gcaaacaacg
    29581 ccgtcgctgg ttcttgggac tctatcaatg tctaaaaaaa taccgaaaaa tgttatcgcg
    29641 agttcgtttt ggggcggtgg gatatttttc ctatgcttac tatatgctat ttgaattttt
    29701 ggctccgttt atagagactt tcggttgttt cgtgattcta ctgtcgttga tctatcacca
    29761 actaaacatc tcatttttca tatcgctctt tttcctctat agtgcttttt gctcactaat
    29821 cacctttgtg tcatttttgc aacgcgtcta ctcgcaagat ttatttattg gacctatgga
    29881 tttgtgtaaa gccttcctgg caaccttgtt tagatatttt ttcttgcatt gggtattgaa
    29941 tattgtccgt ctgacaagtt ttattggata taaaaagaga aagcgtgaat ggggagaaat
    30001 caaacgagtg aaacaattcg tttaagtaaa ggtaagactg gcttataaaa agaaagtctt
    30061 atcttttttt aaaaaaatac ttgactggtt aatattcttg tgatataatt aactggttaa
    30121 caaaggaggt agttatgtta aagaaagtga taagaggctg ttttgttgct ttattcggtt
    30181 ttgttttagc agcttgctcg gctcagaagg aagcgagtca agtgcagcca ggaatgaaaa
    30241 tagtcacctc attttacccg atttattcac tggttaagga agtgtcaggg aataaaaatg
    30301 atgttcgaat gattggctca agacagggta tacactctta tgaaccatcg gctgcggaca
    30361 taaaggccat atacgatgca gatgttttta tctatcattc gcgaattttg gaatcctggg
    30421 caggacgttt ggaacctaat ttgcaaggtt catctgtcaa ggttttggag gcttcgacaa
    30481 atttaccgct gacaaaggtt ccagggttag aagacatgga agctggtcaa gggattgatg
    30541 aagctagttt atatgacccc cacacatggc tggatccagt tttggttggt caggaagctg
    30601 tttcgattgg tgaactttta gcagaaagtg atcctaagaa tgcggattat tatcgtcaaa
    30661 atgccgcaac tttagaggaa aaggcgcaaa agttggcaga caagtatagc ccaatctttt
    30721 taaaagccac atcaaaaaca tttgtcactc aacatacagc cttctcttac actgcacaac
    30781 gcttcgggtt gaagcagttg ggaatcgcag gagtttcaga ggaagagcca agtcctagac
    30841 agttggcgga aattaaagaa tttgttgaca cctacaatgt gcaaacaatt tttacagaaa
    30901 aaggtgcctc ggataagctt gccaaggcat tggcgagttc gacaggtgta gatttaaaag
    30961 tgttggatcc tcttgaagca gatccagaaa ataatttaac ctatctagaa aatctagagc
    31021 aagtcttaga aacattagct caagagttaa aataaaatac cgaattctat cgaccgaaag
    31081 gagaaaaaat gaagaaaaaa gcagttgttg gctccgtagc cgcgcttgtt ttagggatga
    31141 gtctctgtag ctatcagctt ggacgtttcc aagcgatgga agagcaaaaa aatcgtgtgt
    31201 cctatattga agatagtcaa agtgtacaaa ctaccgttgc tgaacaatta acacctgatc
    31261 aagtttctgc caaggaaaat attgacgctg agcagatagt cgttaaaatt actgatcaag
    31321 gctatgtgac atcacacggt gaccatttcc actactataa tggtaaagtc ccttttgatg
    31381 cgatttttag tgaagagttg gtcatgaagg acccaaacta tgtcttacaa gacagtcaca
    31441 tcatcaatga agtccaggat ggctacgtca taaaagttga tgggaaatac tatctctatc
    31501 taaaagaccc tagcaaacat aaaaatgttc gtagcaaaga agaagtggag cggcaaaaag
    31561 gaatctcttc tgctgacagc aaaaatcagg cagcaggaaa tagtaaagac ggccgctaca
    31621 gaacagacga tggctatgtc tttaatccga cagatgttat tgaagacacg ggagatggtt
    31681 ttatcgttcc gcacggcgac cattttcact ttattcctaa aaaagattta tcagctaccg
    31741 aattgaaggc tgctcaagat tactggaatc aaaaaggaag tgtgagctcg gctagtggta
    31801 gtcaatatgg cgatagaaat aatagagctc aacagacaac aattagtgcg gggcaaggtc
    31861 aggatttggc tagtttattg gctcaattgg atgcaacacc cctatctcaa cgccatgtag
    31921 aagcagatgg attggtattt gacccaagaa cgattacgaa gaaaaccgca gcaggtgtca
    31981 tcgttccaca cggcgatcat taccacttta ttccatacag ccagatgtct cctctagaag
    32041 agaagatttc tcgaatgatt ggtgtaaatg gagcaggtgt ttcttctggt gcacaagcaa
    32101 gtcactccca acatacacca acacaaccaa atcgtccagt aacaccaatc ggcacggtta
    32161 caacgcaacc ggtatcgcct acacaaccag tattaccaac acaaccgaag cagtcaacag
    32221 ggaaagtggt ttcctatatg ggacgtcaaa ttcctgctta cggaaaaggg ttagatggta
    32281 aggcatattt tacaagtgat ggatacacct ttagcaaaga ctctattacc tcagttgatg
    32341 atcaagggct gatagctagt catggagatc atttccatta tgttggtttt ggcgaactcg
    32401 aagattttga aatcaagcaa gtagaggaat gggttaatga gaaggcgggc aaacaagtgc
    32461 cgccgaaaac atctgaacaa gtaggaaacg atgctaaacc cacaaaacca agtcaaggga
    32521 atgattcaaa acctgtaaaa ccaattcaag aagaaaatcg ccctgcattt gaatacaaac
    32581 aagtaacggc taaacgtaaa ttggctggaa aagttgttta tgaaatggaa gtaggtggaa
    32641 aaacttatac atatggtcgt gacgaactag atttgatgaa aatctctttt gctgagttga
    32701 ctttggcaga aaaagataag cagtatatct ttgatattgc accgcttgca gaaggagatc
    32761 ttaagccagc catgttggtc ggtatggatc aaattccgat gaagggagcg aatgcaacct
    32821 atgatactgg acaatccttt attattccac acattgatca catccacgtc ctaccttaca
    32881 catggttgag taaggaacaa attgcaacga tccgctatat catgcaacat cctgaaattc
    32941 gtccatctgc ttggactaca agtggacatg gtgatggaga agcaacggat cttgttcccc
    33001 caattttaaa tgcaacacct aaagccaacc gcttaggctt gaaaaattgg caaatcattc
    33061 acacagcaga agaagtcatg gatgcacgtg caaaagggaa atttgcgaca aatgatggct
    33121 atatcttctc ggcggaagac gtactagatc cagcaagttt tgtctttagt caagcgttca
    33181 gtctaccaag agcgacaggt ggttctctgc gttcaatttc caagaaagat ttatctaaag
    33241 aagaattgga agctgtacaa actcttcttg ataaacgaga cgctgaagaa ttggcgcaaa
    33301 atgtcacacc gattgagaaa cgtgcaggtt tgaaaaattg gcaaattgtt cactcggcag
    33361 aagagttggc agaagctaag gcagcaggaa aatatacaac gaaagatggc tatatttttg
    33421 acccagcaga tctattagat cccaaagtga aaataggtac ggataactat cgcatcccac
    33481 gtgtgattac agatggttat cgtcggatta acaagagtga tttgaattac ttaagtgagc
    33541 taatcccagc agaggctatg gtggctcaac gtgagaaatc taattctagt tcaccgtcaa
    33601 cacctgcacc aactgaaaca ggagcaagtg caggcgagac aacaaagcca gaacagccac
    33661 aagttgccaa agaaacagca gaggaaattt ataaccgagt ggaagcgaag aaagtcgttc
    33721 ctttcgaagc actgacctac aatgctggct atgcgaccga agtacgtaac gggactctgg
    33781 taattccgca tcaagatcac tatcactatg tatcctttaa atggtttgac caaggtagtg
    33841 caagaagtcc tgaagggtat agtttagaag atttcctagc aacggttaag tactacatga
    33901 ctaatccaca agaacgccct gtttcagacg atggctgggg agtatttaca ccaaatacac
    33961 catctgaatc aacagaagaa acagagacgg aagaaagtga tgaagaaatt atttctgagg
    34021 aaaccgagga aattgacgag tttacagaag aattaaaacg aagagcagaa gagtttggca
    34081 tggacttcaa aacctttgaa caaagtctgg tcacactctc agaccgttac aaagtttctt
    34141 ttgaagcttt cgaatatgat gcagcaagca aagttgttcg acttgtagat aaggatgggg
    34201 tcaaacggac catctccctt ccaagtttag aagaacaagt atagtaaaca aaatacctgt
    34261 agcgct
//
LOCUS       DASGBY010000004        34254 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.004, whole genome shotgun sequence.
ACCESSION   DASGBY010000004 DASGBY010000000
VERSION     DASGBY010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 34254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34254
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.004"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..610
                     /locus_tag="U1396_000140"
     CDS             <1..610
                     /locus_tag="U1396_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5341369.1"
                     /translation="INLGKITLGNHFDEIIYINLTDHINSSIERHKEGVVVTNPLRWE
                     IAKYYKEEFELGKKALSIIKKDLHVELPVDEAAFIALHFVNANLENIFQESYRITGII
                     MKIEQIIQDYYSTEFNQDSIDYYRFITHVKLFAHRLVEGNEYNDEDDVDLLELMKKKY
                     PREYQCGTRVADFIRLEYDYLLSPSELVYLIAHIRRLTKNLS"
     gene            621..2462
                     /locus_tag="U1396_000141"
     CDS             621..2462
                     /locus_tag="U1396_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5341370.1"
                     /translation="MKYKNTALAILEAVGGEKNVLRATHCVTRLRLELKDENIVSDER
                     VKSISGVLGIMKKNGQYQIILGNDVANYYKEFTALGKFDSDSVQQVKKANVLEQVIEY
                     IAGSMTPLIPAMLGGGMIKVLVIVLPMLGLLKADSQSISFLAFFGDAPYHFMPIFLAY
                     SASQKLKVTPALAMSVAGILLHPNFVQMVSSGDPLHFLGAPVTPASYGSSVIPILIMV
                     WLMKYIEAVFNKVTPAITKSFLQPTLVLLVSGFIALVLVGPLGVIVGEGLSQLVEQMH
                     GVAGWLTLAVLGAIMPFIVMTGMHWAFAPIFLAASIATPDVLILPAMLGSNLAQGAAS
                     MAVAFKSKNSNTKQIAFAAGFSALFAGVTEPALYGVTLKYKKPLYAAMIGGGLAGLFV
                     GLTGVKAYLFAVPSLIALPQFIYSEAASNITNAMIAAAISIIVTFILAYFLGIDEETS
                     TVNLEKVAPGISSRKNVFSPLSGQILPLEKVNDATFSKKMLGEGVAIIPKDGKVYAPF
                     DGAITSLFPTKHAIGLTSDEGVELLIHFGLETVELKGRGFVSHVSDGEKVEKGQLMLE
                     VDVEMLVAEGYDIVTPVVVTNTQEYLDVLLLSTKEEVNYADDLLAVL"
     gene            2477..3901
                     /locus_tag="U1396_000142"
     CDS             2477..3901
                     /locus_tag="U1396_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5341371.1"
                     /translation="MSIFPDNFLWGGAVAANQVEGAYNEGGKGLSVQDVLPNGGLGEA
                     TQEPTEDNLKLQAIDFYHRYKEDIALFSELGFKVFRTSIAWSRIFPNGDEEFPNEEGL
                     QFYDELFDELLKNGIEPLVTLSHYETPLYLARKYHGWVDRKMIQFFEKFARTVFERYK
                     DKVKYWLTFNEVNSVLELPFTSGGIDLPNEELSKQDLYQAIHHELVASSLVTKIAHEI
                     IPDCKVGCMVLAMPTYPMTPNPEDVWAAHAYENLNYLFSDIHVRGYYPNYAKRYFKEN
                     GIKITFMEGDEELLKNNTVDFLSFSYYMSITQAADPSKYSSGRGNILGGLVNPYLEAS
                     DWGWQIDPIGLRLTLNRYYDRYQIPLFIVENGLGAKDQLVKDEAGGLTVHDDYRIQYM
                     QEHLLQVAEAIQDGVEVMGYTSWGCIDCVSMSTAQLSKRYGLIYVDRNDDGSGSLTRY
                     RKKSFYWYKEVIQSNGSILGNSSK"
     gene            4658..5659
                     /locus_tag="U1396_000143"
     CDS             4658..5659
                     /locus_tag="U1396_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5341372.1"
                     /translation="MLKNKNLLATIVALTVMVVAALFLTQKEQNNSTNSTEKVKIGVL
                     QFVTHDSLDEIYKGIKAGLEEGGYTTTDNLEIDFMNAEGDQSQVQTMSKKLVDNGNEL
                     LIGIATPAAQSLANATTELPIIMGAVTDPVGANLVTDLKNPGGNITGVSDQTPVADAV
                     SLIKEITPDAKTIGVLYSSNEDNSKIQVAEFKAAAEEAGYTVLEYAVASSNEIAATVE
                     VASSKADVLFTPVDNTVASAFSTVVSVANKTKTPIFTSVEDMVEGGGIASVTLSQYDL
                     GVATGKMAAKILDGANPADTPVQIFNEGTVVVNQKVAKELGITLSDDVISKASKVIE"
     gene            5682..6548
                     /locus_tag="U1396_000144"
     CDS             5682..6548
                     /locus_tag="U1396_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5341373.1"
                     /translation="MIVSTVSQALLWAVLGLGIFVTFRILNFPDMTTEGSFPLGGAVA
                     VTLLTQGVHPILATLAAVLVGCLAGFVTGLLYTKGKIPTLLAGILVMSSCHSVILFIM
                     GRANLGLLNTKRLQDFLPFSEQVNGLLLGLGSLAVVIGALMFFLYTRFGQAFIATGDN
                     PDMARSFGINTSRMELLGLVLSNGIIALAGALIAQQEGYADVSRGIGVIVVGMASLII
                     GEVIYGNLTMLERFLAIVVGAIFYQFLILVVISLGINTSYLRIFSAMILATCLMVPEL
                     KNKLLKGASLSR"
     gene            6545..7303
                     /locus_tag="U1396_000145"
     CDS             6545..7303
                     /locus_tag="U1396_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341374.1"
                     /translation="MKAIVELKNATKVVTNGFDEERVILDNVNLTIYQGDFITILGGN
                     GAGKSTLFNVIAGTLPLTSGSVHILGEDVTNWPAEKRAKYLARVFQDPKMGTAPRMTV
                     AENLLIAKYRGEGRGLVPRRLAQQTEEFAQLLPRVGNGLEKHLDTPAGLLSGGQRQAL
                     SLLMASLKQPELLLLDEHTAALDPKTSQSLMQLTDELIETKGMTALMVTHQMEDALRH
                     GNRLIVMKNGQIIQDQTAEEKSKMKLEDYYKLFD"
     gene            7486..7971
                     /locus_tag="U1396_000146"
     CDS             7486..7971
                     /locus_tag="U1396_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HEM5341375.1"
                     /translation="MDKLVFESLADLGMDYIVVEHPPALTTEEADRYIEGLEGVRTKS
                     MFLTNKKKTAFYLLIMDDQKQLDMDRFRDLVGANRIRMASSDSLMEKMHLPAGAVSVF
                     GLLHNVDKDIQVFFDKEILSEPILTFHPNVNTKTIFVKTEDVLRFVEEIGFSAKIVDL
                     G"
     gene            7977..8381
                     /locus_tag="U1396_000147"
     CDS             7977..8381
                     /locus_tag="U1396_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEM5341376.1"
                     /translation="MRKCLAICSLLCCLFLVGCRTGAAYQAEIEPMEQSELYTEKEIE
                     AAILVVQDYFDHHFNSCKLLTIGYSGDNEKEFDEWAEHYGAEEAIILTSSFKVAAEGA
                     EPTLEPNSTHTDWKWILVRNVGGKWEHKGHGY"
     gene            8637..10298
                     /locus_tag="U1396_000148"
     CDS             8637..10298
                     /locus_tag="U1396_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM5341377.1"
                     /translation="MSTIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLG
                     VDVVVPNFDYLEENKHRVAGVFLSHGHADAIGALPYLLEKVKVPVFGSHLTIELAKLL
                     VKGNNATKKFNDFHVINAETEIDFGDSVVSFFQTTHSIPESLGIVVKTDEGNIVYTGD
                     FKFDQAADKFYRTDFGRLAEIGNEGVLALLSDSANADSNVQVASMHEAGEEILNTIAD
                     CDGRVIVAAVASNIVRIQQIFDAAEATGRRVVLTGHDVENIVRTAIQLKKLRLVSERL
                     LVKPKDMNKYEDHELIILETGRMGEPLNGLRKMSIGRHRYVEIKEGDLVYIVTTPSIS
                     KEAVVARVENLIYKAGGTVKSITKNLRVSGHGNARDLQLMLNIMKPKYLFPVQGEYRQ
                     LDAHAKAALEIGMYPENIIIVKRGDVMAFEEGDFVHSGAVPAGDVMIDGNAMGDVGNI
                     VLRDRKILSEDGIFIVAITVNRREKKIISKAKVNTRGFVYVKKSKDILREASELVNTT
                     VENYFTKDSFDWAELKSAVRDDLAKFLFDQTKRRPAILPVIMEVK"
     gene            10363..11139
                     /locus_tag="U1396_000149"
     CDS             10363..11139
                     /locus_tag="U1396_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM5341378.1"
                     /translation="MAIMKIEYHSEALDMSRQVTVLYPDRNRVENPDDNDIPVLYLLH
                     GMGGNQDSWLNRSTVERLVRYTNLIVVMVNTDKGWYTNTTYGMNYFDAIAVELPQILK
                     RFFPNMSDKREKNFIAGLSMGGYGTFKIAMMTNRFSHAASLSGALYFDFDNPAAAELG
                     SLSYWQGVFGDISDKQNPNNLLEIAKQSDKKTKFYAWCGEEDFLFEGHQKAVGELKEL
                     GFDIEASFGPGKHEWYYWNQQIEKVLAWLPIDFKLEERLS"
     gene            11205..11900
                     /locus_tag="U1396_000150"
     CDS             11205..11900
                     /locus_tag="U1396_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEM5341379.1"
                     /translation="MKLIGNILRWIWRTFWGLIWLSMMLLACGLGLLFYFQQEAAPQM
                     LQTLAQEVQLMVKGQSEVTIEEGVNTIKHLTTDTVNTADHGRWESNTATVYIETQNPT
                     FVAAYETAIANWNATGAFTFVMTSDPNQADIIATEMNDGNTQAAGEANSTTNLLTNYY
                     SSVTVRLNSFYLLNDQYGYDMDRIIHTAEHELGHAIGLDHEDSQTSVMESAGSNHGIQ
                     QADIDAVLALYSE"
     gene            11911..12276
                     /locus_tag="U1396_000151"
     CDS             11911..12276
                     /locus_tag="U1396_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341380.1"
                     /translation="MLRTITNTIKRYPEQALLFLYNAGIFAWMQSTSHSIMEQIGIDS
                     NWFDKIPEPIKAWTGASLESMQTLLNSSAWGWLIVSMILMLVIRFVKGLIKFVIMLII
                     IGGGLYLLWQNKELVQSLV"
     gene            12327..14225
                     /locus_tag="U1396_000152"
     CDS             12327..14225
                     /locus_tag="U1396_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5341381.1"
                     /translation="MIILSGNKIERSFAGEVLFNNINIQVDERDRIALVGKNGAGKST
                     LLKILVGEETATSGEISTKRDLSLSYLAQDSRFESANTIYDEMLHVFDDLRTTEKRLR
                     SMEEQMGSLSGSDLDQLMKTYDSLSEEFRLAGGFSYEADIRAILNGFKFDQTMWDMKI
                     SELSGGQNTRLALAKMLLESPELLVLDEPTNHLDIDTIAWLENYLVHYKGALIIVSHD
                     RYFLDKVATLTLDLTKHSLDRYVGNYSQFVELKEQKLQTELQNYEKQQKEIAKLEDFV
                     QKNIVRASTTKRAQARRKQLEKMERLDKPTTGQKSANMTFQSDKTSGNIVLTVENAAV
                     GYDGDILSQPISIDQRKLDAIAIVGPNGIGKTTLLKSIIGALPFIKGEAKLGANVEVG
                     YYDQTQSALTPSNTVLEELWSAFPTTPEVEIRNRLGAFLFSGDDVKKSVAMLSGGEKA
                     RLLLAKLSMENNNFLILDEPTNHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVAT
                     KVLEISETGSTLYLGDYDYYLEKKAELEVEAQPDQLESTSQSAGAMDYQAQKENQKEQ
                     RKLARRIEQIEAEIETIENRLSELNQAMLETNDIGQLTDYQKEIDQLTSQQESLMEEW
                     EELSEQMG"
     gene            14234..14563
                     /locus_tag="U1396_000153"
     CDS             14234..14563
                     /locus_tag="U1396_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341382.1"
                     /translation="MIQQNTETLEDNLRFNKLSKLIQTKLSQYFETYPSAVQCQLVCF
                     DRDETRRKVLSYDIYSDFDKLFWVESIAKPISSYSYGHQIDKKDIDKLDREFILDTFL
                     GIDEERG"
     gene            14570..15397
                     /locus_tag="U1396_000154"
     CDS             14570..15397
                     /locus_tag="U1396_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM5341383.1"
                     /translation="MTKHQRFLNSDQFFACPHCGQALGLELNSLRCPNRHTFDIAKQG
                     YVNLAPQVKQSANYHKSSFENRQAFLEAGYYDHLYEALERKIAELGLRSVLDIGCGEG
                     FYSRKLAEKMDLDILAFDISKDSILLAAKSDRTKSVKWFVSDLTKLPIQDKTIDGILD
                     IFSPANYQEFARVLKAGGAILKLVPGPNHLKELRHLAKDQLRKESYDNQDIVDHFKSY
                     LGQVEQVLVSRTLPITAAHAQVLADMTPLFFQVDQSKLDLSQLTEITIEGVLLIGTI"
     gene            complement(15437..16222)
                     /locus_tag="U1396_000155"
     CDS             complement(15437..16222)
                     /locus_tag="U1396_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019770702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM5341384.1"
                     /translation="MVYTSLKSPEKDYTYDLHIAHLYGDLMNTYGDNGNILMLKYVAE
                     KLGARVQVDIVSLTDEFDKNFYDIAFFGGGQDYEQSILAKDLPTKKDSLADFIENDGV
                     MLAICGGFQLLGQYYIEAGGRKIDGLGIMGHYTLNQTNNRYIGDIKIHNDEFNETYYG
                     FENHQGRTFLADNQKPLGKVVYGNGNNKEDGGEGLHYKNTFGSYFHGPILSRNANLAY
                     RLVTTALRKKYGQDIQLASYADILSKEVAEEYGDVKSKAEFEK"
     gene            complement(16222..17565)
                     /locus_tag="U1396_000156"
     CDS             complement(16222..17565)
                     /locus_tag="U1396_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEM5341385.1"
                     /translation="MKVNTALGILAGKSSQFILKKLGRGTTLPGKIALKFDKHILDSL
                     AKDYEVVVITGTNGKTLTTALTVGILQEAFGEITTNTSGANMITGITATFLSAKKNKK
                     GKKIAVLEIDEASLARVTDFIKPSLIVFTNIFRDQMDRYGEIYTTYQMILDGAAKAPQ
                     ATILANGDSPLFNSTNVINPVKYYGFATEEHEPRLAHYNTEGVLCPHCHQIIQYKLNT
                     YANLGSYICNNCGFCRPELDYKLTDLKEITNTSSTFAIDGQDYKINIGGLYNIYNALA
                     AVSVAAFFGVTPEKIKAGFDKSKAVFGRQETFKLGDKDCTLVLIKNPVGATQAIEMMK
                     LAPYDFSLSVLLNANYADGIDTSWIWDADFEQITQMDIPQVFAGGVRSSEIARRLRVT
                     GYPENQITETPKLEDIMALIEQSSSQHAYILATYTAMLEFRDLLAQRQAVGKEMK"
     gene            17747..18601
                     /locus_tag="U1396_000157"
     CDS             17747..18601
                     /locus_tag="U1396_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HEM5341386.1"
                     /translation="MLNLNQLLDTGYWSSLIASPWTALLHLIDISIVVYLIYNFSKAI
                     AGTKIMTLIRGVFLFIIVQIIASLFGLQTIAWLINQVITYGVIAAVVIFAPELRAMLE
                     KLGRTTQIFGTNTVSAEEKLIVAFLKSVAYMSPRKIGALVAVEQAQTLQEYRATGIPL
                     NADISQELLINIFIPNTPLHDGAVIVKEDKVAVACAYLPLSESAGISKEFGTRHRAAI
                     GLSEVSDAFVFIVSEETGSISIARNGIFKHDLTLDEFEAELRATFISENVEKKSIWKR
                     LGGGKHER"
     gene            18591..19295
                     /locus_tag="U1396_000158"
     CDS             18591..19295
                     /locus_tag="U1396_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341387.1"
                     /translation="MNDKFKAVGHLALSIFLALLLFFYATTTNYKNSESAAQNTESET
                     YVHTLSNVPIEIEYDTNKYFISGLSSTVAVELRGSNRVLLQRESDESTRTFQVTADLR
                     ELSDGTQTVKLQLTNLPAGVSATLAPDAITVKIGKKVSKAFPVAGRVYSNQLAEGYSL
                     SKVSVNVDTVKVTTDEETMAKIDRVEAVAMDVSNLSENYSGTAKLQAVDSDGNVLPVV
                     LSQTEANMQIILTKTK"
     gene            19308..20657
                     /locus_tag="U1396_000159"
     CDS             19308..20657
                     /locus_tag="U1396_000159"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006270661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEM5341388.1"
                     /translation="MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETDVPRV
                     FVARDTRISGQMLEAALIAGLLSVGIHVYKLGVLATPGVAHLVKTEKASAGVMISASH
                     NPAQDNGIKFFAGDGFKLDDALEAEIEALLDAEEDTLPRPSAQGLGDVVEYPEGLRKY
                     QQFLVSTGTDLDGMKVALDTANGAAATSARQIFVDLGADLTVMAEKPDGLNINEGVGS
                     THPEKLQELVKETGSQIGLAFDGDSDRLIAVDENGDLVDGDRIMYIVGKYLADRGLLA
                     KNTIVTTVMSNLGFHKALDREGIEKAVTAVGDRYVVEEMRKEGYNVGGEQSGHVILMD
                     YNTTGDGQLTAVQLTKIMKETGKKLSELAAEVTIYPQKLVNIRVENSMKDKAMEVPAI
                     AAIIEKMEAEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRAEIGI"
     gene            20803..22347
                     /locus_tag="U1396_000160"
     CDS             20803..22347
                     /locus_tag="U1396_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000025412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5341389.1"
                     /translation="MSILEVKNLSHGFGDRAIFENVSFRLLKGEHIGLVGANGEGKST
                     FMSIVTGQLQPDEGKVEWSRYVTAGYLDQHAKLEKGQSVRDVLRTAFDELFKTEARIN
                     DIYMSMAEEGADMDALMEEVGELQDRLESRDFYTLDAKIDEVARALGVMDYGMDKDVT
                     ELSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDI
                     PFLNDVINIVYHVENQLLTRYTGDYYQFQEVHAMKRAQLEAAYERQQKEIADLQDFVN
                     RNKARVATRNMAMSRQKKLDKMEIIELQAEKPKPSFDFKMARTPSRFIFQTTDLEIGY
                     DRVLTRKPLNLTFERNQKIAIVGANGIGKSTLLKSLLGIIPPLGGSVERGEYLELGYF
                     EQEVAGGNRQTPLEAVWDAFPALNQAEVRAALARCGLTSKHIESQIQVLSGGEQAKVR
                     FCLLMNRENNVLVLDEPTNHLDVDAKDELKRALQAYKGSILMVCHEPDFYEGWVDDVW
                     DFNELT"
     gene            22575..23222
                     /locus_tag="U1396_000161"
     CDS             22575..23222
                     /locus_tag="U1396_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5341390.1"
                     /translation="MTVGKTVPLDWFEKAQGKKLLGLACGGGQQGPIFAAHGYETTIL
                     DFSKEQLDKDRLVAERENLDLQTVQADMTQAFLFEDESFDIIFCPVSNVYVEDLTNMW
                     QESYRVLKKGGLLMVGYMNPWIYVFDSDDVWDYPDKTLVPKYSLPFNARQLEEAGQIT
                     IDPEYGYEFSHTLEEQIAGQLRAGFAMIDFYESKDSRNRLTQYASDYLANLSIKW"
     gene            23385..24590
                     /gene="sstT"
                     /locus_tag="U1396_000162"
     CDS             23385..24590
                     /gene="sstT"
                     /locus_tag="U1396_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEM5341391.1"
                     /translation="MNKIISVWKKMNLIRKIGIGVVLGVLLGLIAPKITVIALFGSLF
                     VGALKAIAPLLVLTLVAHALSQAPAGQKSNMRTVICLYLFGTFAAAFIAVGASYLFPI
                     KLVLSTTTTTDIIPPQGIAEVFQDLLLKVVDNPINALATANYIGVLTWAAVFGLAFRH
                     ASKTTKDLLQSAAEVTSKVVGWIIGLAPFGIMGLVFDTIANNGLTALKDYGLLLLLLV
                     GSMIFVALVVNPLIAFLVMKKNPYPLVFECIRVSGVTAFFTRSSAANIPVNMQLCKRL
                     GVDPDTYSVSIPLGATINMAGAAITINILTMAAVHTLGISVDFSSALLLSVVASLSAA
                     GASGVAGGSLLLIPVACSLFGIPNELAMQVVGVGFVVGVIQDSCETALNSSTDVLFTV
                     VAERSAWKK"
     gene            24852..26252
                     /gene="pepV"
                     /locus_tag="U1396_000163"
     CDS             24852..26252
                     /gene="pepV"
                     /locus_tag="U1396_000163"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HEM5341392.1"
                     /translation="MTVDFRAEFDKRKDEFLADLFDLLRINSERDDSQADAQHPFGPG
                     PVRALDKFLEIAQRDGYPTKNVDNYAGHFEFGEGDEVLGIFGHLDVVPAGSGWDTDPY
                     EPQIIDGRLFARGSSDDKGPTMACYYGLKIIKELGLPTSKKVRFIVGTDEESGWADMD
                     YYFENVGLPLPDFGFSPDAEFPIINGEKGNITAYLHFAGENSGAAKLHSFTGGLRENM
                     VPESATAIISGDLADLDSKLADFTAAYGLKADAETLENGQIQVTVIGKSAHGSTPEEG
                     VNGATYLAKFLSQFAFDGAAKAYLDLAGQVLLEDHDAQKLGVAIYDEQMGALSMNAGV
                     FKFDETSSDNTIALNFRYPKNTNPETIKAGLEKLGVEAVSLSEHGHTPHYCPIDDPMV
                     ATLLSVYEKHTGLKGHEQVIGGGTFGRLLKRGVAYGAMFPGDVNTMHQANEFIEVEQL
                     YRAAAIYAEAIYELIK"
     gene            26293..26751
                     /locus_tag="U1396_000164"
     CDS             26293..26751
                     /locus_tag="U1396_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341393.1"
                     /translation="MKLKELTVADLEMVKQLFLSVFSQEPWNDDWSDEEQLDCYIGDL
                     LGHPRALCFGLFDPEKVIGLSLGYIRYWCEGTEYRIEEFCISRDYQGQGHGASLLADI
                     EKQLADRKIVHILLQTERNLSAYSFYKKCGFRALEEDVTMVKKVGHHGTC"
     gene            26738..27316
                     /locus_tag="U1396_000165"
     CDS             26738..27316
                     /locus_tag="U1396_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEM5341394.1"
                     /translation="MELADIRQAIIEDVANRDFTNKGIAPLFQAPSTAKILIIGQAPG
                     LKTQEKGRLFDDASGNNLRQWLGVDRQTFYESGHFAILPMDFYYPGKGKSGDLPPRKD
                     FAPKWHPLIMKQLPQIELTILVGNYAQTYYLEKSQRNLTERVKHADDYLPKYFPLPHP
                     SPRNNIWQAKHPWFVEQTLPILKNNINILLGK"
     gene            27388..28170
                     /locus_tag="U1396_000166"
     CDS             27388..28170
                     /locus_tag="U1396_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEM5341395.1"
                     /translation="MRKWKKIIIGCFALLTVCLLFAPTLARANQIPDRPTGTTVVDET
                     QLLSSETIAEIDQLNRSWASTEQALQVGVYVTESLSSDIESLANETFRHWQVGFAGTD
                     NGVLLVVAIADRAFRIETSDNAATVITDVEAKDILENAREFFRQEDYSGGISYIVNSI
                     GDRFYGTSIGKNQLAAIEEGTSEKDDGFWLFLIVILIAILFGIIDKSSRGGGGPGNLL
                     WMLVDDHHHYHNHHSSNSSSSSFGGGSWSGGGGGGGGASSGW"
     gene            28243..28824
                     /locus_tag="U1396_000167"
     CDS             28243..28824
                     /locus_tag="U1396_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM5341396.1"
                     /translation="MKKKWLAILLPILALLFLGMGAVGQYNGLVDSYAEVENAQANVD
                     TQLQCRYDLIPNVVAAVKGAMEHEEEIFTAIAEARAKIGSSQVGTSDYNQAQSQLDSA
                     VSRLLVVAENYPQLTANQQVSALITELEGTENRILVARKDYNSVATTYNKKIKRFPTS
                     IYANLFGYEKVELFQATNDAATTVPSVDLSDKE"
     gene            28836..30299
                     /locus_tag="U1396_000168"
     CDS             28836..30299
                     /locus_tag="U1396_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEM5341397.1"
                     /translation="MDFGFDILAIMIPIIVVVLFVLLFVFGYVSAKPNEAIVITGLGK
                     PRTLIGRSGFMIPFIEKRSYISIEQFSTDVQTTDFVPTLDFINVKADAVVKVKVGISD
                     ELLNAAAQNFLNWKTADISASIQDVLEGNLREIIGQMELRDMVNNRQAFAEKVQSNAA
                     PDLAKMGLEIIAFTVQSFTDDNDVIKNLGIDNIVTIQKDAANARAKAEREQAEVRARE
                     DKAANDARVAADLEIAKKQNELAIEQANLKRQSDVQLAQANAAYGIEEQAQRKEIERA
                     TAEANIVKQQKEAEVKAEEVKVREQELSATIRKQAEAEKYARQQAAEADLIERQRKAE
                     AELYETQREAEAQKARAEAAKYAAEQEAAGIEAKGRAEAEAIRLKLEAEAEGLSKKAD
                     AMAKFNDAAVTEMVVNVLPEIAKNIAAPLGNVDKITMYGEGNASKMVGDLMTTMDKTT
                     EGLGLNVRDLISATLTGRAMSTGLLTAQETKEAEGDK"
     gene            30388..30696
                     /locus_tag="U1396_000169"
     CDS             30388..30696
                     /locus_tag="U1396_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341398.1"
                     /translation="MKMFRNSKKSKLFIQKINELLSDSELKLSKALKFQLLEAMELCE
                     KGSKISYLSYKIYPWVLEELALNRIQSDKLKMFKRYLEQERWKYYFGSALGMAFTSIR
                     "
     gene            complement(30818..31894)
                     /locus_tag="U1396_000170"
     CDS             complement(30818..31894)
                     /locus_tag="U1396_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341399.1"
                     /translation="MKKLLICIVLLSCLVFPFIGWKLYAYQHNTITLTSEADFYLIYP
                     GKVEAFQLNGQEPELLHTQKMNSEGYFGSGENYVIDSRYLVFANDQQKFINDNLISID
                     FNTGTVLRKPSQYSSYISGTDGQDFYTAGPYHILAQFDRNFDTIQTHVLNDDFIPNAP
                     VMVDQTSVYLTGFVKDFTQEGPEENVLIVFDKKDFSKQEVFKYDNTIATGEGPWVNGT
                     IYLPNLGKKTSEYTDIEQSSELLTFDTKTKTFSSVTLEHPSPSTLHALKDQKLLLIEH
                     QNDMFSPISFTIYNTQTGQESYHRLDELNPRPYYIDHVRQLDGNRLLLILAGKALIYD
                     WQAKKVLSQTILSENYVSGVWVND"
     gene            complement(32006..33379)
                     /gene="mnmE"
                     /locus_tag="U1396_000171"
     CDS             complement(32006..33379)
                     /gene="mnmE"
                     /locus_tag="U1396_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEM5341400.1"
                     /translation="MITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDL
                     ATVPSHSLNYGHIIDPATGQVLDEVILGVMRSPKTFTREDVIEINTHGGIAVTNEILQ
                     LLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQ
                     LINDTRQEILNTLAQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGK
                     ILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLI
                     DTAGIRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDLANRIV
                     LLNKTDLEEQIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFENAGLVEQDATYLSN
                     SRHISLIEQAVQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLF
                     SQFCLGK"
     gene            34063..>34254
                     /locus_tag="U1396_000172"
     CDS             34063..>34254
                     /locus_tag="U1396_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012962169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341401.1"
                     /translation="MSNGKILGLDIGIASVGVGVIDAQTGEIIHASSRIFPSANAANN
                     AERRTFRGSRRLIRRKKHRI"
BASE COUNT         9825 a         6495 c         8108 g         9826 t
ORIGIN      
        1 aataaattta ggaaagataa cacttggaaa tcattttgat gagattattt acatcaattt
       61 gacagatcat atcaattcta gtatagaaag acataaggaa ggagtagtcg ttacgaaccc
      121 tcttagatgg gaaattgcca aatattataa agaggagttt gaactgggga aaaaagcatt
      181 atccatcata aaaaaagatt tacatgtcga actcccagtt gatgaagcag ccttcatcgc
      241 tttgcatttt gtcaatgcga atttggaaaa tatttttcaa gaatcttatc gtattactgg
      301 aattatcatg aagattgaac aaattattca agactattat tctacagaat tcaatcagga
      361 ttctattgat tactaccgat tcatcacaca tgttaaattg tttgctcatc gtttggtaga
      421 ggggaatgaa tacaatgatg aagatgatgt ggatctttta gagttaatga aaaagaagta
      481 tccaagagag taccaatgtg gaactcgagt agcggacttt attcggttag aatatgatta
      541 tctactgagt ccaagtgaat tagtctattt aattgctcac attcgacgtt taacaaaaaa
      601 tttatcataa ggagtctatt atgaagtaca agaatactgc attggcaatc ctagaggcag
      661 tcggaggaga aaagaatgtt cttcgtgcaa cccattgcgt tactagattg cgactggaat
      721 tgaaagatga gaatatcgtg tccgatgaac gtgttaaatc catttctgga gtactcggta
      781 ttatgaagaa aaatggacag tatcaaatta tcttaggtaa tgatgtagct aattactata
      841 aagaatttac tgcattagga aaatttgatt ctgattcagt tcaacaggtt aaaaaagcaa
      901 atgtcttaga acaagtcatc gagtatatcg ctggctctat gacaccactt attccagcta
      961 tgcttggtgg aggtatgata aaagttctag tcattgtctt accgatgctg gggcttttaa
     1021 aagcggattc ccaatctatt tcatttttag ccttttttgg agatgcacca tatcacttta
     1081 tgccgatttt tttggcctac tcagcttcac aaaaacttaa agttacacct gctttagcca
     1141 tgtcggttgc tggtattttg ctacatccta attttgttca aatggtatct tcaggtgatc
     1201 cacttcattt tttaggtgcc cctgttacac ctgctagcta tggttcatca gttattccaa
     1261 ttcttattat ggtttggcta atgaagtata ttgaagctgt tttcaataag gtcactccag
     1321 caataacaaa aagtttctta cagccaacct tggtcctgct tgtttcaggt ttcatagctt
     1381 tagttcttgt tggacctctc ggcgttattg ttggtgaagg attatcgcaa ttggttgaac
     1441 aaatgcatgg tgtagctggt tggttaactt tagcagttct tggagcaatc atgccattta
     1501 tcgttatgac cggtatgcac tgggcttttg caccgatttt cttggcagct tcaatcgcga
     1561 cacctgatgt actgattcta ccagcgatgt taggttctaa cttggcacaa ggtgccgctt
     1621 ctatggcagt tgcatttaag agtaaaaata gtaacacgaa acaaatagcc tttgcagctg
     1681 gattttcagc tttatttgct ggtgtcactg agcctgcttt atatggtgtt actctaaagt
     1741 ataaaaaacc attgtatgca gcaatgattg gtggtggtct agcaggatta tttgttggtt
     1801 tgacaggtgt aaaagcatac ctttttgcag taccttctct cattgctttg ccacaattta
     1861 tttactctga agcagcttca aacattacta acgctatgat tgctgcggca atttcaatta
     1921 ttgtcacatt tattttggcc tatttcctag gtatcgatga agaaacgtca acagttaatt
     1981 tagaaaaagt agcacctggc atttcaagta gaaaaaatgt cttctctcct ctttcaggtc
     2041 aaattctccc tttagaaaaa gtaaatgatg caacgttttc aaaaaaaatg cttggagaag
     2101 gagttgcaat tatccctaag gatggaaaag tctatgctcc atttgacggg gctattacca
     2161 gtctttttcc aacaaaacat gcaatcggtt taacaagtga tgaaggggta gagttgctta
     2221 tccactttgg attagaaact gtcgagctaa aaggaagagg ttttgtaagc catgtttcag
     2281 atggggaaaa agttgaaaag ggtcaactga tgctggaagt ggatgtagaa atgcttgtcg
     2341 cagaagggta cgatatagtg actcctgtag ttgttacaaa tacacaggaa tatctggatg
     2401 ttctcttgct ttcgacaaaa gaggaagtca actatgctga tgatttatta gcagtcttat
     2461 aattagagga gggtatatgt caatttttcc agacaatttc ttatggggag gagcagtagc
     2521 tgcaaaccaa gtagaaggtg catataatga gggaggaaaa ggattatccg ttcaagatgt
     2581 tcttcccaat ggtggactgg gtgaagctac ccaagaacca acggaagata atttgaaatt
     2641 acaagctatt gatttttacc atcgatacaa ggaagatata gccctgtttt cagagttggg
     2701 atttaaggta tttagaacat caattgcttg gagtagaata tttccgaatg gagatgaaga
     2761 atttccaaat gaagaagggc tacagtttta tgatgaactt tttgatgaac ttctaaagaa
     2821 tggtatagag cctcttgtaa ctctttctca ctatgaaact cccctgtatc tggcaaggaa
     2881 atatcatggc tgggtggata gaaaaatgat tcaatttttt gaaaaatttg ctcgtacagt
     2941 ttttgagcga tacaaagata aggttaagta ctggttgaca tttaacgagg tcaattctgt
     3001 cttagaactg ccttttacaa gtggtggaat tgacttgccg aatgaagaac tttcaaaaca
     3061 agatttatat caggccattc accatgaact tgtagcttct agtcttgtta ccaaaattgc
     3121 tcatgaaatt attcctgact gtaaggttgg ctgtatggtc ttagctatgc cgacctatcc
     3181 aatgacacct aatcctgaag atgtttgggc ggctcatgcc tatgaaaatt tgaactattt
     3241 attttcggat atacatgtta gaggatatta tcctaattat gccaaaaggt actttaaaga
     3301 aaatggcata aagattactt ttatggaagg tgatgaagag ttattaaaaa ataatacggt
     3361 tgattttctc tccttcagtt attatatgag tattactcag gcagcagatc catcaaaata
     3421 ttcatctgga agaggaaata tcttgggtgg tttggtcaat ccttatttag aagcttctga
     3481 ttggggttgg cagattgatc caattggttt aagattgaca ctaaatcgtt attatgatcg
     3541 ataccagatt cctttattca ttgttgaaaa tggtttggga gctaaagatc agctagtgaa
     3601 ggatgaggct ggtggtttga ctgttcatga cgattatcga attcaataca tgcaagaaca
     3661 ccttttacaa gttgcggagg cgatacagga tggcgtagaa gtcatgggtt atacttcttg
     3721 gggctgtatt gattgtgtat ctatgtctac cgcacaatta tctaaaagat atggactaat
     3781 ttatgttgat agaaatgatg atggaagcgg cagtctaact agatatagaa agaaatcatt
     3841 ttactggtat aaagaagtta ttcaatccaa tggcagtatc ttgggcaata gctcaaaata
     3901 gactcttaag gtattaaaaa gttttcagaa aatttaatca aaagtattga caaagtgatt
     3961 ttgataccgt ataatcatct gtaatcagaa gaagtagtaa agcagaagtc ttcagggagc
     4021 ctgtggtgct gagaacaggt ggcagagttt tatgaaatgg gctgatgtgc atttatgtct
     4081 attttatgac gtcgttagtc ggtcttgccg taccaccagt actgccttcg cccgactgcc
     4141 tagtcctaaa atgccctaaa ttcacaagga ttgtttggca taacatactt tgcgtagact
     4201 gttttggctg agtacgaggc aggtcgacgc agcttatact agcggtatag caaggagagc
     4261 taacgaagta atcagccaaa acagtcacgt aaatgaactt aaaacaatga tagttcggtc
     4321 cgcacacctt acagtgcaac tccttgttag aggagatgag atatgggagg gttctagaca
     4381 attcccataa gtgaggtggc accgtgtcat tgacgccctc gcaggaagtt ttttcctgcg
     4441 ggggcttttt ccttgtcttt gtagattgct tttatatttt gttacgattg gcttgcctaa
     4501 cttgagttat gtctgcgcct ccgttcctta tctaaaagca atctactttg acaattatta
     4561 acaaaacgag gtaatcatga tgaaacgatg gcgatggtgg gataatatat tgatgacgta
     4621 gaaattgtat attgtgtatt ttacgaggag aatgaatatg ttgaaaaata aaaatttact
     4681 tgctacaatt gttgccctta ctgttatggt agttgctgcc ctgtttttga cgcaaaaaga
     4741 acagaacaat tcaacgaata gcacagaaaa agtcaaaatt ggggtcctcc aatttgtgac
     4801 gcatgattca ctagacgaaa tttacaaggg aatcaaagca ggacttgaag aaggtggtta
     4861 taccacaacg gataatttag aaattgattt tatgaatgca gaaggtgatc agtcacaggt
     4921 tcaaaccatg agtaaaaaat tggtggacaa tggcaatgaa ttattgattg gtatcgcaac
     4981 acctgctgca caaagtcttg ccaatgcaac cacagaatta cccattatca tgggggctgt
     5041 aacagatcca gtcggagcca acctggtgac ggatttgaaa aatcctggtg gaaatattac
     5101 aggggtatct gaccaaacac cagtagcaga cgcagtttct ctcattaaag aaattacacc
     5161 agacgctaaa actatcggtg tcctctattc ttcaaatgag gacaattcaa aaattcaagt
     5221 agcggaattt aaggcagcag cagaagaggc tggctatact gttcttgaat atgcagttgc
     5281 ttctagtaat gaaattgcag cgacagtaga ggtcgcaagt agtaaagcag atgttctctt
     5341 tacaccagta gacaacacag ttgcctcagc attttcaact gtcgtatctg tggcaaataa
     5401 aaccaaaact ccgattttca ctagcgtaga agacatggta gaaggtggag gtatcgcatc
     5461 tgttaccctt agccaatatg acttgggtgt ggcaactggt aagatggctg cgaaaattct
     5521 tgatggtgcc aatccagcgg atacacctgt acaaatcttt aacgagggta ccgttgttgt
     5581 caaccaaaaa gttgctaaag aattaggaat taccttgtca gatgatgtga ttagtaaagc
     5641 aagcaaggtt attgaataag agataagaga aaaggaaaaa tatgattgta tcaacagttt
     5701 cacaggctct tttatgggct gtactaggtt tgggaatatt cgttaccttt cggattctga
     5761 attttcctga tatgacgaca gaggggtctt tcccgcttgg aggagcggtt gctgttacct
     5821 tattgacgca aggagttcat cctatcttgg ctactctagc agcagttctt gttggctgtt
     5881 tggcgggctt tgtcacaggc ttgctttata ccaaggggaa aattcccact ctcctagctg
     5941 gtatcttggt catgtcttcc tgtcactctg tcattctatt tatcatgggt agggcaaatc
     6001 taggcttact gaataccaaa cgtttacaag atttccttcc tttttctgag caagtcaatg
     6061 gtctcttgct aggtctaggt agcctagcgg tggtgattgg tgccttgatg ttcttcctct
     6121 atactcgctt tggacaggcc tttattgcaa ccggggataa tccagatatg gctcgcagtt
     6181 ttggtatcaa tacaagtcga atggagttgc taggtcttgt tctttcaaat gggatcatcg
     6241 ctcttgcagg tgccttgatt gcacaacaag aaggctatgc ggatgtgtcg cgtggtattg
     6301 gtgtcattgt ggtcggtatg gctagtctga ttatcggtga ggtaatttat ggtaacctta
     6361 ctatgttaga acgattcttg gccattgttg tcggagcgat tttctatcag ttcttaattt
     6421 tggtggtcat ttccctcggt atcaatacca gctacctccg tatcttctcg gccatgattc
     6481 tggcaacttg cctcatggtt cctgagttga aaaataaact tctgaaagga gccagtctgt
     6541 cacgatgaaa gcaattgttg aattaaaaaa tgccaccaag gtggtgacaa acggttttga
     6601 tgaagaacgt gtgattttgg ataatgtcaa tctgaccatt taccagggtg attttattac
     6661 cattttgggt ggaaatgggg ctgggaagtc aaccctcttt aatgtcattg ctggaaccct
     6721 acccttgacc agtggttcag tccatattct tggtgaggat gtgaccaatt ggcctgcaga
     6781 aaaacgtgct aagtatctgg cacgtgtttt ccaagatccc aaaatgggta cagcgccacg
     6841 gatgacggtg gcagaaaatc tactgatagc taagtaccgt ggcgaggggc ggggcttagt
     6901 gccacgcaga ttggcccaac agacggaaga atttgcccag cttttgccga gagtgggaaa
     6961 tggtttggaa aaacatttgg acacgccagc agggctctta tcaggtggtc aacgccaggc
     7021 attgagtttg ttgatggcga gtttgaaaca gcctgaactt ttactcttgg atgagcatac
     7081 tgcagccctc gaccctaaaa ccagccaatc cttgatgcaa ttaacggacg agttgattga
     7141 gaccaaggga atgacggccc tcatggtcac tcaccagatg gaagatgctc tgcgtcacgg
     7201 taatcgcttg attgtcatga aaaatggtca gattattcag gaccaaacgg ctgaagaaaa
     7261 atccaagatg aaactggaag attattataa gttgtttgat taagaacctg tgtggatagt
     7321 tcgcaacttc caaccaagtt tggttttggc taaaactgaa tcttatatca aacagaacac
     7381 ttgtgaatac aggtctaaag tctggagtaa tccaggcttt tattatcctt tgaattttta
     7441 gttaaaaagt agtataatat actaaatatg tcaagaggtg ctgtcatgga taaattggtt
     7501 tttgaaagct tagctgactt gggaatggac tacatcgttg tagagcatcc accagctctg
     7561 acaactgagg aagcagaccg ttacattgaa gggttagaag gagtacggac caagtccatg
     7621 tttctgacta ataagaaaaa gactgcattt tatttactga tcatggatga ccagaagcag
     7681 ctggatatgg accggtttcg tgatttggtg ggagccaacc gcattcggat ggcctcgagt
     7741 gatagcttga tggaaaaaat gcacttgcct gcgggtgcgg tatctgtttt tggcttgtta
     7801 cataatgttg ataaggatat tcaagtcttt tttgataaag aaatcctttc tgaacccatt
     7861 ctaaccttcc accccaatgt taatacgaaa acgatttttg taaaaacaga ggatgttttg
     7921 cgttttgtag aagagattgg cttttcagca aagattgttg acttggggta acaaagatga
     7981 gaaaatgttt agctatttgt agtctgttgt gttgtctttt tttggtagga tgtcggacag
     8041 gagcagctta tcaggcagag attgaaccga tggaacaatc agaattgtat acggaaaaag
     8101 agattgaggc ggctattctt gtagttcaag attactttga tcaccatttt aacagttgta
     8161 aattgctgac catcggttac agtggtgata atgagaagga atttgatgag tgggcggagc
     8221 actatggtgc agaggaagct attatcctaa cttcgtcttt taaggtagca gctgaggggg
     8281 cagagcccac cttagagcct aatagtaccc atacggattg gaaatggatt ttagtgcgga
     8341 atgttggtgg taagtgggaa cataagggac atggttacta atgtatatgt agaacttcgt
     8401 tgattttcag cggagttttt tgtaaatttt cttgaaaaaa tgtataatag aagcgatagc
     8461 tatttaggta tttctattta aaagttgcgt tgatggttga atataatttt gaaccaaagt
     8521 gtgtcttttg caaatagagc tccgacatag cagactgtaa ttcgacttgg aactcccaag
     8581 gaccgttggt aagaaaaata aaatggacac ctgtgggatg tccaaaagga gtaaagatga
     8641 gtacaattaa aattatggct cttgggggtg tgcgggaaaa tggaaaaaac ctgtacattg
     8701 ccgaagtgaa tgaacatatt tttgttttgg atgcaggggc aaagtatcct gagaatgaac
     8761 agttaggtgt ggatgtagtc gtcccaaatt tcgattattt ggaagaaaat aagcatcgtg
     8821 tagcaggggt ctttttatct cacgggcatg cagatgctat cggagcgctt ccttatctct
     8881 tggagaaagt gaaagtgcca gtatttggtt cgcacttgac tatcgaattg gctaagctac
     8941 ttgtcaaggg gaataatgct actaagaaat ttaatgattt ccatgttatc aatgctgaaa
     9001 ctgaaattga tttcggagat tcagtggtat ctttctttca gacgacccac tctattccag
     9061 agagtttagg aattgtcgtt aagacggatg agggaaatat tgtctacaca ggtgacttta
     9121 agtttgacca ggcggcagat aagttttatc gtacggattt tgggcgattg gctgaaatcg
     9181 gtaacgaagg tgtgttggcc ctcttgtcag actcagctaa tgcagatagc aatgttcaag
     9241 tagcgagcat gcatgaggct ggggaggaaa ttctcaatac gattgctgac tgtgacgggc
     9301 gtgttattgt ggcagcagtt gccagcaata ttgtacgtat tcaacagatt tttgacgcgg
     9361 cagaagcaac tggtcgtcgt gtcgtgttga caggacatga tgtggaaaac attgtccgaa
     9421 cagcgattca attgaaaaaa cttcgtttgg tcagcgaacg cttgttggta aaaccaaagg
     9481 atatgaacaa gtatgaagac catgaattga ttattttaga aactggtcgt atgggcgagc
     9541 cgttaaatgg attgcgtaaa atgtctatcg gtagacatcg ctacgttgaa atcaaagaag
     9601 gtgatctagt ttatattgtt accactccaa gtatttcaaa agaagcggtt gttgctcgtg
     9661 tggagaactt gatttacaag gctggtggta ccgtaaaatc tatcacaaag aatcttcgcg
     9721 tctctgggca tgggaatgct cgtgatttgc agctcatgct caacatcatg aagcctaaat
     9781 atcttttccc agttcaaggg gagtatcgtc aattggatgc tcacgctaag gctgcgcttg
     9841 aaattggtat gtatccagaa aacattatca tcgttaagcg tggggatgtc atggcttttg
     9901 aagaggggga ttttgtccat agcggagcgg ttcctgctgg tgatgtcatg attgacggaa
     9961 atgccatggg cgatgttgga aatatcgtcc ttcgtgaccg taaaatccta tcagaagacg
    10021 gtatctttat cgtggctatc actgtcaacc gccgtgagaa aaaaatcatt tctaaagcca
    10081 aggtcaatac tcgtggtttt gtctacgtga aaaagagcaa ggacatcttg cgtgaggcat
    10141 cagaattggt gaatacaacg gtggaaaatt actttacaaa ggatagcttt gactgggcag
    10201 agcttaagag tgctgttcgc gatgatttag caaaattcct ctttgaccaa actaaacgtc
    10261 gcccagctat tttgccggta attatggaag tcaagtaagc tgatttatat acataagaag
    10321 agccgaggga aactcaggct ctttaccata aggagaagat ttatggcaat aatgaaaatt
    10381 gaataccatt cagaagctct agatatgtct agacaggtta cggttttata tccagatcga
    10441 aatcgtgtgg aaaatcccga tgacaacgat attcctgtcc tatatctttt gcacggtatg
    10501 ggaggaaatc aggattcctg gctgaatcgt tctacagtgg aacggttggt tcgttatacc
    10561 aatcttatcg tggttatggt caatacagat aaaggttggt ataccaatac cacttacggt
    10621 atgaattact tcgatgccat tgcagtagag ttgcctcaaa ttctcaaacg atttttccca
    10681 aatatgtctg acaagcggga gaagaatttt atcgctggtt tgtctatggg tggttatggg
    10741 accttcaaga ttgccatgat gaccaatcgt ttttcacacg cagcttcgct ttcaggcgca
    10801 ttgtattttg attttgataa tccagcggca gcagaattgg gaagtctttc gtattggcaa
    10861 ggagtatttg gtgacatttc tgataaacag aatccgaata atttgttaga aattgctaaa
    10921 caatccgata aaaagactaa gttttatgcc tggtgtggtg aggaagattt tctctttgaa
    10981 gggcatcaaa aggcagttgg ggagttgaaa gagctgggat ttgatataga ggcaagtttc
    11041 ggacctggta aacatgagtg gtactactgg aatcagcaga ttgagaaggt attggcttgg
    11101 ttgccaattg atttcaaatt ggaagaaaga ctgtcctagt ttttaagaaa agtttcagaa
    11161 attatggcta tactaaaacc tatttctaga aagaggtata gtctatgaaa cttattggaa
    11221 atattctacg gtggatttgg cggacatttt ggggtctgat ttggttatca atgatgttat
    11281 tggcttgtgg tctaggtcta ttattctatt ttcaacagga agcagctcct cagatgttac
    11341 aaactctagc tcaagaagtg caattgatgg tcaaaggaca gtctgaagtg acgattgagg
    11401 aaggtgttaa taccattaag cacctgacga ctgatacggt caatacagct gatcatggtc
    11461 gatgggaaag caatactgcg actgtttaca ttgaaaccca gaatccaaca tttgtagctg
    11521 cctatgaaac agccattgca aattggaacg cgacaggggc atttactttt gtgatgacaa
    11581 gtgatccaaa tcaggctgat attattgcta ctgagatgaa tgatggaaat acccaggcag
    11641 caggtgaggc caattcaacg actaatttat tgacgaatta ttatagctcg gtaacggtgc
    11701 gtctgaatag tttttattta ttaaacgacc aatatggtta tgatatggat agaattatcc
    11761 atacagctga gcatgaattg ggccatgcta ttggcctaga tcatgaagat agtcagacct
    11821 ctgttatgga atcggcaggt tctaatcatg gtatccagca ggcagatatt gatgcggtcc
    11881 ttgccttgta ttcagaatag aagggaaaat atgcttcgaa caattacaaa cacaataaaa
    11941 cgttatcctg agcaagctct gctctttctc tataatgctg ggatttttgc atggatgcag
    12001 tctaccagtc attcgattat ggaacaaatc ggtatagata gcaactggtt tgataaaatc
    12061 cccgaaccta tcaaggcctg gacaggtgcc agtctagaga gtatgcaaac cttactcaat
    12121 tcttctgctt ggggatggct gattgtatct atgatattga tgttggtcat ccgctttgtt
    12181 aagggcttga ttaagtttgt catcatgctc atcattattg gtggtggtct ttatctgctc
    12241 tggcagaata aggagcttgt tcaatccttg gtataaatag aggaatcaaa tcagccttgt
    12301 gctgattttt ttggtataat attttcatga ttattctaag tggaaacaag attgaacgct
    12361 cttttgcggg cgaagtttta tttaacaata tcaacattca agtggacgag cgggatcgga
    12421 ttgcccttgt cggaaaaaat ggggcaggca agtctactct gcttaaaatc cttgtcggag
    12481 aagagactgc gacaagcgga gagatttcaa ccaagcgtga tttgtcactg tcttatctgg
    12541 cacaggacag ccgttttgag tcggcaaata ccatttacga tgaaatgctc catgtttttg
    12601 acgacctgcg gacgacggaa aaacgcctgc ggtctatgga agagcagatg ggcagcctat
    12661 ctggtagcga cctagatcaa ctgatgaaaa cctacgatag tctgtcagag gaatttcgtc
    12721 tggcaggtgg ttttagctat gaggcggata ttcgtgccat tttgaacggc tttaagtttg
    12781 accagaccat gtgggacatg aaaatctctg aactctcagg tggtcagaat actcgacttg
    12841 cactggcaaa aatgcttctt gaaagcccag aactcttggt cctggacgag ccgaccaacc
    12901 acctggacat cgacacgatt gcttggttag aaaactacct agtgcattac aagggagcct
    12961 tgattatcgt cagccatgac cgctatttct tggacaaggt ggcgacactg acactggact
    13021 tgaccaagca ttccttggat cgctatgtgg gcaattattc tcagtttgtc gagctcaaag
    13081 agcagaagtt gcaaacagaa ttgcaaaact atgaaaagca acagaaggaa attgccaaac
    13141 tagaagactt tgtccagaaa aatattgtcc gtgcttcgac caccaagcgc gctcaggcta
    13201 gacgcaagca gttggaaaag atggagcgac tggacaagcc aacaactggt cagaagtctg
    13261 ctaacatgac cttccagtcg gacaagactt ctggcaatat cgtcttgaca gtggaaaatg
    13321 ctgcggtggg ctacgatgga gatatccttt ctcagcccat ttctattgac caacggaaac
    13381 tagatgccat tgccattgtc ggtccgaatg gaatcggaaa aactaccctg ctcaaatcaa
    13441 tcatcggagc tttgccattt atcaaagggg aagccaagct aggtgccaat gtggaagtgg
    13501 gttactacga ccagacccag tcagccctaa caccttccaa tacagtcttg gaggagctct
    13561 ggtcagcctt tccgactacg cctgaagtgg agatccgcaa ccgccttgga gccttcctct
    13621 tctcaggaga tgatgtcaaa aagtccgttg ccatgctgtc gggtggggaa aaggcccgtc
    13681 tgctcctcgc taagctatct atggaaaaca acaacttcct catcctcgac gagccgacca
    13741 accacctgga catcgacagt aaggaggtcc tggaaaatgc ccttatcgac tttgacggca
    13801 ccctgctctt tgtcagccac gaccgctatt tcatcaaccg cgtcgccacc aaggtgctcg
    13861 aaatctcgga aacgggctcc acgctctact tgggcgacta tgactattat ttggagaaaa
    13921 aggcagagct ggaagtagaa gcccagcctg accagctaga aagtactagc caatcagccg
    13981 gagccatgga ctaccaagcc caaaaggaaa accaaaaaga gcaacgcaaa ctagctcgcc
    14041 gcatcgagca aatcgaggca gaaatcgaga caatcgaaaa tcgcctgagc gagctcaacc
    14101 aagccatgtt agaaaccaac gacattggcc agttgaccga ttaccagaaa gaaatcgacc
    14161 aactgaccag ccaacaagaa agtcttatgg aagaatggga agaattatct gagcagatgg
    14221 ggtaagaaat aagatgatcc aacagaatac agaaacactc gaagataact tacgatttaa
    14281 taaattatcc aaactgattc agacaaaatt gtcccaatat tttgaaacct atccttcagc
    14341 tgtccagtgc caattagttt gttttgatag agatgaaact cgtagaaaag tccttagcta
    14401 tgacatttat tccgattttg ataagctctt ctgggtagag tcaatagcaa agcctatttc
    14461 tagttattcc tacggacatc aaattgataa aaaagatata gacaaactag atagggagtt
    14521 tatcttggat acttttcttg gaatagatga agaaagagga tagattttca tgaccaaaca
    14581 ccaacgtttc cttaatagcg accaattttt tgcctgtcca cattgtgggc aggctcttgg
    14641 tcttgagctc aacagcctcc gctgtcccaa ccgccacacc ttcgacatcg ccaagcaggg
    14701 ctacgtcaat ctggcacccc aggtcaagca gtctgctaac taccacaagt ctagctttga
    14761 aaaccgccag gcctttttag aggcaggcta ttacgatcat ctctacgagg ctttggagag
    14821 gaaaatagca gagctgggct tgcggtctgt cttggacatc ggctgtggag agggctttta
    14881 ttcccgtaag ttagccgaga aaatggactt ggacattctt gcttttgata tttccaagga
    14941 ttccattctc ttggcagcca aatctgacag gaccaagtcg gtcaaatggt ttgtcagtga
    15001 cttgaccaag ttacctattc aagataagac cattgacggc atcttggaca tcttttcccc
    15061 agccaattat caggaatttg ccagagtgct gaaagctggt ggggcaattc taaaattagt
    15121 cccaggcccc aatcacctca aggagctccg ccatttagcc aaagaccaac tccgcaagga
    15181 atcctatgat aaccaggata ttgtggacca tttcaagtct tacctgggac aggtggagca
    15241 agtgctagtc agtcgaactc tgccgattac agccgcccat gctcaggtct tggcagacat
    15301 gacacccctc tttttccaag tagaccagtc caagttggat ttgagccagt tgaccgagat
    15361 tacgattgag ggagtgctct tgattggaac tatataaaaa atgaaaccgc ctctggatat
    15421 cagaagcggt tttgctttat ttctcaaact ctgccttgct tttcacatcg ccgtattctt
    15481 cagcgacttc tttgctgagg atgtcggcgt agctggcaag ttggatgtct tgtccgtatt
    15541 ttttgcggag ggcagtagtg accaggcggt aggccaggtt ggcattgcgg gataagattg
    15601 gtccgtggaa gtagctaccg aaggtgtttt tgtagtgcag accttcgccg ccgtcttcct
    15661 tgttattgcc attaccgtag acaaccttgc ccagcggttt ttggttgtca gctaggaaag
    15721 tacgcccttg gtggttttca aaaccgtagt aggtttcgtt gaactcatca ttgtgaattt
    15781 tgatgtcacc gatgtagcgg ttattggtct ggttgagggt gtagtggccc atgattccta
    15841 gaccgtcaat cttgcgaccg ccagcttcaa tataatattg accgagcaac tggaagccac
    15901 cgcagatagc tagcatgacg ccatcgtttt cgataaagtc tgctaggctg tctttttttg
    15961 tcggtaaatc cttagcaaga atggattgtt catagtcctg tccaccgccg aaaaaggcga
    16021 tgtcgtagaa atttttgtca aattcatctg tcagggaaac gatgtccacc tggacacgag
    16081 cccccagctt ttcagccaca tacttaagca tgaggatatt gccattgtca ccgtaggtgt
    16141 tcatcaaatc accgtagagg tgggcgatgt ggagatcgta agtgtaatct ttttcaggac
    16201 tttttaatga cgtatagacc attatttcat ctcctttcca acggcttggc gttgagccag
    16261 caggtcacgg aattcgagca tagctgtata agtagctaaa atataagcat gctggctact
    16321 cgattgctca atcaaggcca tgatatcttc tagttttggt gtttcagtaa tctggttctc
    16381 aggatagcca gtcacacgga ggcgacgggc gatttcagac gagcggacac cacctgcaaa
    16441 gacttgtgga atgtccattt gagtgatttg ttcaaagtca gcgtcccaaa tccagctggt
    16501 atcaattccg tcagcgtagt tggcattgag aaggacggac aggctaaaat cgtatggagc
    16561 cagtttcatc atttcaatag cctgagtcgc accgaccggg tttttaatca agaccagtgt
    16621 acaatcttta tcacccagct tgaaggtttc ttggcgaccg aagactgcct tggacttgtc
    16681 aaaacctgcc ttgatttttt caggagttac accgaaaaat gctgctacgc tgacagctgc
    16741 tagggcattg tagatgttgt agaggcctcc gatgttgatt ttgtaatcct gaccgtcaat
    16801 ggcaaaggta gaagaagtat tggtgatttc tttcaagtct gtcaacttat agtccagctc
    16861 tggtcggcaa aagccacagt tgttacagat atagctgccc aagttagcgt aggtattgag
    16921 cttgtactgg ataatctggt ggcaatgagg acagagaacg ccttcggtat tgtaatgggc
    16981 cagacgaggt tcatgttctt ccgtcgcaaa accgtagtat tttactggat tgataacgtt
    17041 tgtcgagtta aaaagtggac tatcaccatt ggccaaaata gttgcctgcg gagcttttgc
    17101 agccccgtcc aaaatcatct ggtaggtggt ataaatctca ccgtagcggt ccatctggtc
    17161 acggaagata ttggtgaaaa caatcaggct cggcttgata aagtcggtta cacgggcaag
    17221 acttgcttcg tcaatctcca agacggcaat cttcttgccc tttttatttt tcttggcaga
    17281 caaaaaggtt gctgtaattc ctgtgatcat attggcaccg ctggtattag tcgtgatttc
    17341 tccaaaggct tcttggagaa tcccaacggt caaggcagtt gttaaagtct taccattggt
    17401 tccagtaata acaacgactt cataatcttt agccaaacta tctaaaatat gtttatcgaa
    17461 tttgagggca attttcccag gcagagtagt accacgtcct agttttttca aaatgaactg
    17521 ggaacttttt cctgctagaa tacccaaagc tgtatttact ttcatgggac tattttatca
    17581 taaagactgg ggattttcta gaatggagtg tgttggaacg tgatatattc ctgcagtaaa
    17641 tctgtaatat ttttaacagg aaggtcacta ttttctaaag aaaaggggaa aaaatatggt
    17701 ataatgagta cattactatg tatgagttag aaagtatgag aatgatatgt taaacctaaa
    17761 ccagttactg gatacagggt attggtcgag tttgatagcc agtccttgga ccgcgctgct
    17821 gcacctaatt gatattagta tagttgttta tttgatttat aattttagta aggctattgc
    17881 aggtactaaa attatgacat tgattcgagg ggtttttctc ttcattattg tccagattat
    17941 agcgagttta ttcggtctgc agacgattgc ttggctgatt aatcaagtaa tcacgtatgg
    18001 ggttattgcg gcagtagtta tttttgcacc agagttgcgt gctatgcttg aaaaactcgg
    18061 taggacaact cagatttttg ggacaaatac agtgagtgca gaagaaaagt taattgttgc
    18121 ttttctcaaa tcggttgctt atatgtctcc gcgtaaaatc ggagcgcttg tggcagtaga
    18181 acaagcccaa acattgcaag aatatagagc aacggggatt ccacttaatg cggatatatc
    18241 acaggaattg ttaataaata ttttcatccc gaatacaccg ttacatgatg gggctgtaat
    18301 tgtcaaggaa gacaaggtag ctgttgcttg tgcttatttg cccctgtcag agagcgcagg
    18361 aatttcaaag gaatttggaa cacgacatcg tgcagccatt ggcttatcgg aggtatctga
    18421 tgcgtttgta tttattgtct ctgaagaaac tggcagtatc tctattgcac gaaacgggat
    18481 attcaaacat gatttgactt tggatgagtt tgaagcagag ttgcgagcga cttttatttc
    18541 tgaaaatgta gagaaaaagt ccatctggaa gcgattagga ggtggcaaac atgaacgata
    18601 agtttaaagc tgtaggtcac ttagccttat ctatttttct agcattgttg ctctttttct
    18661 atgcaacaac caccaactat aaaaattcag aatcagctgc acagaacacg gagtcagaaa
    18721 cctatgttca cacactgagc aatgtaccga ttgaaattga atatgataca aacaagtatt
    18781 ttatttctgg actttcttcg acggtggcag ttgaattaag gggctctaat cgtgttctcc
    18841 tacagagaga atcagatgag tcaactcgga cgtttcaagt gactgcggat ttgagagagt
    18901 tgagtgatgg gacacagact gtcaagctac aattgaccaa tttgccggct ggagtgagtg
    18961 cgacactagc acctgatgcg attaccgtca agattggtaa aaaagttagc aaggcattcc
    19021 cagtagcagg tcgagtatat agtaatcaat tggcagaagg ttacagtctg tctaaggttt
    19081 cagtcaacgt agataccgtt aaagtgacaa cggatgaaga aacaatggct aagattgatc
    19141 gggtcgaagc tgttgcgatg gatgtgagca atctgtctga gaattatagt ggtacagcta
    19201 aattacaggc tgtagatagc gacggcaatg tcttgccagt tgtactgtct cagacggaag
    19261 caaatatgca aattatactt acaaaaacaa aataagaggt tatgaaaatg ggtaaatatt
    19321 ttgggacaga tggtgtccgt ggagaagcaa acgtagaatt aacgccagaa ttagcattca
    19381 aattgggtcg ttttggtggt tatgtcctta gccagcatga gacggatgtt cctcgtgtct
    19441 ttgtggcgcg tgacacacgt atctcaggtc aaatgttaga ggctgccttg attgcaggac
    19501 ttctatcagt agggattcat gtgtataaat tgggagtttt ggcgacaccg ggtgttgccc
    19561 acctagtcaa aactgaaaaa gcaagtgcag gtgtcatgat ttctgcaagt cataacccag
    19621 cacaagataa cggtatcaaa ttctttgctg gtgatggttt caaattggat gatgcattgg
    19681 aagcggaaat tgaggctctt cttgacgctg aggaagacac attgccacgc ccatctgctc
    19741 aaggtttagg agatgtggta gaatatccag aaggtctacg taagtaccag caattcttgg
    19801 tgtcaactgg tacagatttg gacggtatga aagttgccct cgatacagcc aatggtgccg
    19861 cagcaacatc tgcacgtcaa atttttgtag atttgggagc agatttgaca gtaatggctg
    19921 aaaagccaga cggtttaaat atcaatgagg gtgttggttc aactcatcct gaaaaattgc
    19981 aagaactggt caaggaaaca ggaagtcaaa ttggacttgc ctttgatggt gacagtgacc
    20041 gcttgattgc cgtcgatgaa aatggtgatt tagtagacgg tgaccgtatc atgtacatcg
    20101 ttggtaaata ccttgctgat cgaggtctat tggccaaaaa tacaattgtg accacagtta
    20161 tgtctaacct tggtttccat aaggctttgg atcgtgaagg tattgaaaaa gctgtgaccg
    20221 cagttggtga ccgctatgtg gttgaagaaa tgcgcaagga aggctacaat gtcggtggtg
    20281 agcagtcagg acacgtgatt ctgatggatt ataataccac aggcgacggc cagttgaccg
    20341 ctgtgcaatt gaccaaaatc atgaaagaaa ctggtaagaa gttgtcagaa ttggcagcag
    20401 aagtgaccat ttacccacaa aaattggtca atatccgtgt ggaaaacagc atgaaagaca
    20461 aggcaatgga agtgcctgct attgcagcta tcattgaaaa aatggaagca gaaatggctg
    20521 gcaacggtcg tatcttggta cgcccaagtg gtactgagcc cctcttgcgt gtcatggcag
    20581 aagcgccaac ggatgctgaa gtcgattact acgtggacac cattgccgat gtggtccgtg
    20641 cggaaattgg aatttaagca gaaatcaatc atttgttaag atgatttcat tgtcttgaac
    20701 taccagattg attaggtggc tagtagttcc actcaagact gcgagaataa aagtaaaaac
    20761 tggagtttgg ttactccagt tctttgatgt tgtgaggaaa ttatgagtat tttagaagta
    20821 aagaatttaa gtcatggttt tggtgaccgc gcaatttttg agaatgtctc cttccgtctc
    20881 ttgaaagggg agcatatcgg tcttgtcggt gccaatggag aagggaaatc gaccttcatg
    20941 tccatcgtga caggtcaatt gcagccagat gaaggtaagg ttgaatggtc acgttatgta
    21001 acggcaggtt atttagacca gcatgctaaa ttagaaaagg gtcaatcagt ccgtgatgtc
    21061 ttgcggacag cattcgatga actcttcaag acagaagccc gtatcaatga catttacatg
    21121 tctatggcag aagagggtgc cgatatggat gccctcatgg aagaggttgg tgaactgcag
    21181 gatcgtctgg aaagccgtga tttctatacg cttgatgcca agattgacga agtagcgcgt
    21241 gcgcttggtg tcatggacta tggcatggac aaggatgtga cggagttatc agggggacaa
    21301 cgaactaaag ttcttcttgc aaaattgctc ctggaaaagc ctgacatctt gcttctggat
    21361 gagccgacca actacttgga tgctgagcat attgactggc tcaaacgcta cttgcagaac
    21421 tatgaaaatg cctttgtctt gatttcgcat gacattcctt tcttgaatga tgtgataaac
    21481 attgtctacc atgtggaaaa tcagctcttg actcgctata caggtgatta ctaccaattc
    21541 caagaagtcc atgctatgaa gcgggctcag ttggaggcag cttatgagcg ccagcagaag
    21601 gaaattgcag acttgcagga cttcgttaac cgtaataagg cccgtgttgc gactcgaaac
    21661 atggccatgt ctcgtcagaa gaaattggac aagatggaga ttattgagct tcaagcagag
    21721 aaaccaaagc catcatttga tttcaaaatg gctcgaactc caagtcgctt tatcttccaa
    21781 acgactgatt tggaaattgg ttatgaccgt gtattgacac gtaaaccgct caatctgacc
    21841 tttgaacgca accagaagat tgccattgtc ggtgccaacg gtatcggtaa atccactctt
    21901 cttaaaagtt tgctggggat tattccaccg ctgggcggtt ctgtagagcg tggggagtat
    21961 ttggaactag gctatttcga gcaagaagta gctggtggca atcgtcagac tccgcttgaa
    22021 gccgtttggg atgcctttcc agcccttaac caggcggaag ttcgggcagc cttggctcgt
    22081 tgcggtctga cttccaagca tatcgaaagc caaattcaag ttctttcagg tggtgagcaa
    22141 gccaaagttc gcttctgttt gcttatgaac cgtgaaaaca atgtcttggt tctcgacgag
    22201 ccgaccaacc acttggatgt ggatgccaag gatgaactca aacgtgccct tcaagcctac
    22261 aagggctcta tcctcatggt ctgccacgag cctgatttct atgaaggctg ggtggacgat
    22321 gtatgggatt ttaatgaatt gacttagatt gaaagctatc gaacgatagc tttttctttg
    22381 tgcttatact ataatagaat gagcatagta aaggaggtaa aaaatgaaaa gaacagaacg
    22441 aggccagatt tgctaggcct ctctagagga agtaaaacgg tctggggata gaccgtttta
    22501 gctcaacaac tagaaataaa gacttgttga cgaactcttt ttgaccagtc gagttctttc
    22561 ccactcgcgt ttctttgacg gttggaaaga cagtaccgct tgactggttt gaaaaagccc
    22621 aaggtaagaa attgctgggt ctagcatgcg gtggtggtca acagggacca atttttgcgg
    22681 ctcatggcta tgagacaact attttggact tctccaagga acagttggac aaggataggt
    22741 tagttgctga gcgggaaaat ctggatttgc aaacggtcca ggcagatatg acacaagcct
    22801 ttctttttga agacgagagt tttgatatca tcttttgtcc tgtttcaaat gtttatgtcg
    22861 aagatttgac caatatgtgg caggagtctt atcgggtctt gaaaaaagga ggcttgctca
    22921 tggttggcta catgaaccct tggatttatg tatttgacag tgacgatgtt tgggattatc
    22981 cagacaagac cttggttcca aagtatagcc tacctttcaa cgcacgacaa ttagaagaag
    23041 caggacaaat cacgattgat ccagaatatg gctatgaatt tagccacacc ttagaagaac
    23101 agattgctgg gcaattacga gctggttttg ccatgattga tttttatgaa tccaaagaca
    23161 gtcgcaatcg cttgactcaa tatgcctcag attacctagc gaatttatcg ataaagtggt
    23221 agaaacaagc caccgaaaga tggtcttttc aactcagtag gtaaagttga aatgattgtg
    23281 caagattttt caggcttccg ctgtataata tctcattttt tatgctattg acctgactgg
    23341 atttttctgc tatgattgaa aaatgtttgt ttggaggtaa atgagtgaat aaaataatat
    23401 ctgtatggaa aaaaatgaat ttaatccgaa aaatcggaat tggtgttgtt ttgggagtgt
    23461 tactaggctt aattgctcca aaaataacgg tcattgctct ctttggtagt ctatttgtag
    23521 gagcattgaa agctatagcc cctcttttgg ttctgacact agttgcacat gctctatcac
    23581 aagctcctgc tggtcaaaaa tcgaatatga ggacagttat ctgcttgtat ctatttggca
    23641 cttttgcggc ggccttcatt gctgtaggag caagctattt attccctatt aaactggttc
    23701 tttctactac aacgactacg gacattattc ctccacaagg gattgctgaa gtattccaag
    23761 acctcttgtt gaaggtcgtt gacaatccaa tcaatgctct tgcaacggct aattatattg
    23821 gtgtgttgac atgggcggca gtgtttggct tggcctttcg tcatgcaagc aagacaacca
    23881 aagatttatt gcaatctgcg gcagaagtga cttctaaagt tgtaggctgg attattggtc
    23941 tggcaccatt tggtatcatg ggcttggttt tcgataccat tgcaaataat ggtctgacag
    24001 ctttaaaaga ctatggttta ctgctcttac tcttggttgg aagcatgatt tttgtcgcgc
    24061 ttgttgtcaa tcccttgatt gcttttcttg taatgaagaa aaatccttac ccgctggtat
    24121 ttgaatgtat tcgggttagt ggggttacgg cattttttac aagaagttca gcagctaata
    24181 tccctgtcaa tatgcagctc tgcaaacgtt taggagtgga tcccgataca tactcagtat
    24241 ccattccgct cggtgccaca attaatatgg ctggcgcggc tattacgatt aatattttaa
    24301 caatggcagc tgttcataca cttggcatca gtgttgattt cagctcagct cttcttttat
    24361 ccgttgttgc atcactatca gcagcaggag catctggggt agcaggtggc tcgcttctcc
    24421 tcatcccagt agcatgtagt ctttttggta ttccaaatga gttagccatg caagtagttg
    24481 gagtcggatt tgtggtcgga gtgattcagg actcttgtga aacagccctc aactcatcaa
    24541 ccgatgtttt gtttacagtt gtagcagaac gatctgcttg gaaaaaatag aaagaagttg
    24601 ggagaccaac tttttttctt cgctttactt ctgaaatctc tttcattttg tgataaaata
    24661 gacttacttt gatatagtct ttgggtttac ttttagaact aggcaacgag ccgcaggcat
    24721 aactggagtt aggcaaggtg agttcaaaca ctccagtgga gtgtttgaag ttggaaataa
    24781 ggaaacgatg tttcctcgct cgtcgaagta ataaaagata aaccaaatga cgacactgaa
    24841 aaggagaaca tatgacagta gattttagag cagagtttga caaacgcaaa gatgagtttc
    24901 tagcggacct ctttgacctc ttacgcatca attctgagcg tgacgacagc caggcagatg
    24961 cccagcaccc atttgggcca ggaccagtgc gtgccttgga caagtttcta gaaattgctc
    25021 agcgtgatgg ctatccgacc aagaacgttg acaactacgc aggtcacttt gagtttggtg
    25081 aaggcgacga agtccttggt attttcggtc acttggatgt ggtgccagca ggaagcggat
    25141 gggataccga cccctacgag ccgcaaatca tcgacggtag gctctttgcc cgcggctcct
    25201 ctgacgacaa ggggccaacc atggcttgtt actacggctt gaaaatcatc aaggagttgg
    25261 gccttccgac ctctaaaaaa gtccgtttca tcgtcggtac cgatgaagag tcaggctggg
    25321 cggacatgga ttactacttt gagaacgttg gtctgccatt accagatttc ggattctctc
    25381 cagacgctga gttcccgatt atcaacggcg aaaagggaaa tatcacagct tatcttcatt
    25441 ttgcggggga aaatagcgga gctgctaaac tgcattcctt cacaggcggc ctgcgtgaga
    25501 acatggtgcc tgaatctgcg acagctatta tctctggcga cctagcagac ctggacagca
    25561 agttggcaga tttcacagca gcctatggcc taaaagctga cgcggaaacc cttgaaaacg
    25621 gtcaaattca agtcaccgtc atcggaaaat cagcccacgg ttcaacccca gaagaaggtg
    25681 tcaacggagc aacctatttg gcaaaattcc ttagccaatt tgcctttgat ggagcagcca
    25741 aagcctatct tgacttagca ggacaagtcc ttctggaaga ccacgatgcc caaaaactcg
    25801 gcgtagccat ctacgatgag caaatgggag ctctttctat gaatgcaggt gtctttaagt
    25861 ttgatgaaac ctcatctgac aacacaattg ccctcaactt ccgttatcca aaaaatacca
    25921 accctgaaac catcaaggct ggtttggaaa aactgggcgt ggaagctgtt agcctgtctg
    25981 agcatggcca taccccacat tactgcccaa tcgatgaccc aatggtcgca accctcttgt
    26041 ctgtttatga aaaacacaca ggcttgaaag gtcacgaaca agtaatcggt ggcggaacat
    26101 ttggacgcct gctcaaacgt ggcgttgcct acggagccat gttcccaggc gatgtcaaca
    26161 ccatgcacca agccaacgaa tttatcgaag tcgagcaact ctaccgcgcc gctgccattt
    26221 acgcagaagc tatctacgaa ctcattaagt aatacatgaa gacgggtacg cccgtctttt
    26281 ttaggaggaa gaatgaaact gaaagaactc accgttgcag atttggaaat ggtcaaacag
    26341 ctcttcttgt ctgtctttag ccaagaacct tggaatgatg attggtcaga tgaggaacaa
    26401 ttagattgct acataggcga tttactggga cacccaagag cactctgttt tggcctgttt
    26461 gacccggaaa aagtgatagg gctgtcactt ggttacattc gctattggtg tgagggaaca
    26521 gagtatcgaa ttgaagagtt ctgcatttcc cgtgattacc aagggcaagg acatggtgct
    26581 agtttattag ctgatattga gaagcagtta gctgatagaa aaattgttca tattcttctg
    26641 caaaccgaac gcaacctttc agcctattct ttctacaaaa aatgcggttt ccgagcctta
    26701 gaagaagatg tgaccatggt caagaaagta ggacatcatg gaacttgctg atattcgtca
    26761 agccatcatt gaggatgttg ctaaccgaga ctttacgaac aagggaatag ctcccctttt
    26821 ccaagctcct tcgaccgcaa aaattctcat tattggacag gcacctggct tgaaaaccca
    26881 ggaaaaaggg cgtttatttg acgacgccag tggtaacaac cttcgtcaat ggttgggcgt
    26941 ggatcgacag actttttatg aatcgggtca ttttgctatt cttcctatgg atttctatta
    27001 tccaggaaaa gggaagtctg gggatttgcc gcctcgcaag gattttgcgc ccaaatggca
    27061 cccactcatt atgaagcaac tcccccagat tgagctgacc atattggtag gcaattatgc
    27121 tcaaacttat tatttggaaa aatcccaaag gaacctgacg gagagagtga aacatgcaga
    27181 tgattacctt cccaagtatt ttcctttgcc ccatccatca cctagaaaca atatctggca
    27241 agctaaacat ccttggtttg ttgaacagac tctaccgata ctgaaaaaca acataaatat
    27301 attgttggga aaatgataat atgatataat tgtatatata tacctaataa atttttctta
    27361 tctttgttca tcgaaggagg tgttctgatg agaaaatgga aaaaaattat catcggctgt
    27421 ttcgctcttc taacggtttg cttgctattt gctcccacac tagctagagc aaatcagatc
    27481 ccagaccgac ccacaggtac aacggtagtg gatgagacgc agttactctc gagtgagacc
    27541 attgcagaaa ttgatcaact caatcgaagt tgggcaagca ccgagcaagc tttacaggtt
    27601 ggtgtttatg taacagaaag tctgtccagt gatattgaaa gtttggctaa tgaaaccttt
    27661 cgtcactggc aggtcggttt tgcaggaacg gacaacggag ttcttttagt ggttgccata
    27721 gctgacagag catttcggat agaaacctca gacaatgctg ccacagtcat cacggatgta
    27781 gaagccaagg atattctaga gaatgcaagg gaattctttc gacaggaaga ctacagtgga
    27841 ggaatttcct atatcgtcaa ctccattggg gataggtttt atggtacaag cattggtaaa
    27901 aatcagttag ctgctataga agaaggtaca agtgagaagg atgacggctt ctggctgttt
    27961 ctcatagtta ttctgatcgc tatcctattt ggtattattg acaaatctag tcgtggtggt
    28021 ggaggtccag gcaatctact ctggatgttg gttgatgatc atcatcacta tcacaatcat
    28081 cactcatcta attcctcatc gtctagtttt ggcggaggta gttggtcagg tggtggaggc
    28141 ggcggtggcg gagcctcttc tggatggtaa ggcatcgtat aaggcttctg atagttgttt
    28201 gcttttttac gaatgtttaa tcgtagttag aaaggaaatc ttatgaaaaa gaaatggtta
    28261 gccatacttc tcccgattct cgctctgctg tttttaggaa tgggagcagt tgggcaatac
    28321 aatggcttag ttgacagtta tgctgaggtt gaaaatgcgc aagccaatgt agacacacag
    28381 ttgcaatgtc gctatgactt gataccaaat gtagtcgcag ctgtcaaagg cgccatggaa
    28441 cacgaggaag aaatatttac tgctattgca gaagcgcgtg ctaaaatcgg ttccagccaa
    28501 gtaggaacca gcgactacaa tcaggcacaa agtcagctag attcggcagt gtctagattg
    28561 ttggtagtgg ctgagaatta tccgcaatta acagccaacc aacaggtatc tgccctgata
    28621 acagagcttg aaggtacgga aaatcggata ctggtagccc gtaaagacta taattcggta
    28681 gcaactacct acaataaaaa aatcaagcgg ttcccgacct ccatctatgc taacttattt
    28741 ggctatgaaa aagtcgagct tttccaggca acaaatgatg cggcgacgac tgtaccaagt
    28801 gttgatttga gtgataagga ataaaggaga taaatatgga ctttggattt gatatattgg
    28861 caattatgat accaattatt gttgttgtac tatttgtttt attgtttgta tttggttatg
    28921 tgtctgctaa gcctaacgaa gcgattgtca ttactggctt gggcaaacct cggactttaa
    28981 ttggtcgttc tggttttatg attcccttta tcgaaaaacg ctcctatatc tctattgagc
    29041 agttttcaac agatgtgcag accacagatt ttgtaccgac tcttgatttt attaacgtaa
    29101 aagctgacgc ggtcgtaaaa gtaaaggttg ggatatccga tgaattgctc aatgcggcag
    29161 ctcaaaactt ccttaactgg aaaactgcag atatttctgc ctctattcaa gatgtcttgg
    29221 aaggaaatct gcgtgaaatc attggccaga tggaactgcg tgacatggtt aataaccgcc
    29281 aggcttttgc agaaaaagtc caatccaacg cagctcctga cttggctaaa atggggctgg
    29341 aaatcattgc ctttacggtt caatccttca cagatgacaa cgatgtcatt aaaaacctgg
    29401 gtattgacaa tattgtgacc atccagaagg atgccgcaaa tgctcgtgcc aaagcagagc
    29461 gggaacaagc agaagtccgt gcccgtgagg ataaggcggc taatgatgcg cgtgttgctg
    29521 cagacttaga aatcgccaag aaacagaatg aactagctat tgagcaagct aatctaaaac
    29581 gtcagtccga tgtccaactg gcacaggcaa acgcagccta tggcattgag gagcaagctc
    29641 aacggaaaga aatcgagcgt gctactgctg aagccaatat tgtcaagcaa caaaaagaag
    29701 cagaagtaaa agcagaggaa gttaaggtcc gtgaacaaga gctctcagct actatccgca
    29761 aacaggcaga ggcagaaaaa tacgctcgtc aacaagctgc agaagcagat ttgattgaac
    29821 gtcaacgcaa ggcagaagca gaactctacg aaacgcagcg tgaagcggaa gctcaaaaag
    29881 cgcgtgccga agctgctaag tatgctgcgg agcaagaagc ggcaggtatt gaggccaaag
    29941 gacgtgccga agcagaagcc atccgtttga aactcgaagc agaggcagaa ggtcttagca
    30001 agaaggcgga tgccatggct aagtttaatg atgcagcggt gacagaaatg gtggttaatg
    30061 ttcttccaga aatcgccaag aatattgctg caccacttgg aaatgttgat aagattacca
    30121 tgtacggcga agggaatgcc tcaaaaatgg tgggagacct gatgacgacc atggacaaga
    30181 caacagaagg tctaggactc aatgtccgtg atttaatcag cgcaacccta actggtcgtg
    30241 ccatgtcaac aggtttactg actgcccaag aaacaaagga agcggaaggg gacaaataaa
    30301 aataataagc agttggaaga gatgggtgac tgagtaggtt tacaccatca tttccatcgc
    30361 atgattgttt cagaaatccc tacgaagatg aaaatgttta gaaacagtaa aaaaagtaag
    30421 ttgtttatac aaaaaataaa tgaactatta tctgattcag aattaaagtt gagcaaagca
    30481 ttgaaattcc agttgttgga agcaatggag ttgtgtgaaa aaggtagtaa gattagctat
    30541 ctttcatata aaatttatcc atgggtattg gaagaactag ctttgaatag gattcaatcg
    30601 gataaattaa agatgtttaa gcgctattta gagcaagaaa ggtggaaata ttattttggt
    30661 tctgctttgg gaatggcgtt tacttcgatt agataatggt tccgaggatt tgtaagtaca
    30721 ttgattgtgc tgtgcaactt cgatagaata tgcgaaagtc ccaagaaaga gtaatcttgg
    30781 gacttttaca atctttattg agattcgttt ttgtttatca gtcatttacc cacactccgc
    30841 tgacataatt ctcagataga atggtttgac ttaaaacttt ttttgcttgc cagtcataga
    30901 tgagtgcctt accagccaga atcaataata atctgttacc gtctagttga cggacatggt
    30961 caatataata aggacgagga ttaagctcgt ctagacgatg gtagctctct tgacctgttt
    31021 gggtattgta aatggtaaaa gagattgggc taaacatgtc attttgatgt tcgatgagga
    31081 gaagcttctg gtctttgaga gcatgtagtg tgcttggtga ggggtgttct aaagttactg
    31141 acgaaaatgt ttttgttttt gtatcaaagg ttaggagttc ggatgactgt tcaatgtcag
    31201 tatactcact tgtttttttc cctaaatttg ggagatagat ggttccattg acccaaggcc
    31261 cctctcctgt tgcaatggta ttgtcgtact tgaatacctc ttgttttgaa aaatctttct
    31321 tatcaaatac aatcaagaca ttttcttcgg gtccttcttg ggtaaaatct ttcacaaaac
    31381 cagttaaata gactgacgtt tggtccacca tgactggagc atttgggatg aagtcatcgt
    31441 ttaaaacgtg ggtttgaatg gtatcaaaat tcctgtcaaa ttgcgctagt atgtgatagg
    31501 gccccgctgt ataaaagtct tgtccatctg taccactgat atagctacta tactgacttg
    31561 gctttcgcaa gacagtgcca gtattgaaat cgatggatat cagattgtcg ttaatgaatt
    31621 tttgctgatc gttggcaaag actagatacc gactgtctat gacataattt tcaccagaac
    31681 caaaataccc ttctgaattc attttttggg tatgaagcag ctctggttct tgaccattta
    31741 gctgaaaggc ttcgacctta ccgggataaa tcaagtaaaa atcagcttcc gacgttaatg
    31801 tgattgtatt gtgctggtag gcatatagtt tccagccgat aaatggaaag acaagacagg
    31861 atagaaggac aatacaaata agaagttttt tcatgggaat gccgcctttc actgtttagt
    31921 atatctaaat ttgtcatctt agacaagaaa ttatgtgtta atatacaaat aaagtcatgc
    31981 aagttttctt acatgacttt tgttcttatt ttccaagaca gaattggcta aagagttggg
    32041 taatgagttc atctggagca gcatcacctg ttatttctcc caaaatttgc caacagcgtg
    32101 tcaggtcaac ctgtaacaag tctactggca tgcccatttc cagcccatcg ttgacagctt
    32161 gtaggctttg gactgcctgt tcaatgaggg aaatgtggcg agaattggag aggtaggtgg
    32221 catcttgctc gaccagacct gcattttcaa agaagagttg attgattttt tcttcgattt
    32281 ggtcgatatt ctggtttttc aagacggaaa tgcggatgac atcctcaggc agttggtctg
    32341 cttcaatctg ttcttccagg tcggtcttgt tgagtaggac gatacggttg gccaggtctg
    32401 aaatggctag gaggttgcga tcttgctcgg tcaggggttc agatgcgttg aggactagca
    32461 ggatgaggtc ggcctcctca agggcttttt tagagcgctc cacaccgatt ttttcaacga
    32521 tgtcgtctgt ttcacggata cctgctgtat caatgagctt gagggggacg cctttgatgt
    32581 tgacgtattc ttcgataacg tcgcgggttg ttcctgcgat gtctgtaacg atggcttttt
    32641 cctcgcggag gaggttattg agcaggctgg attttcccac atttggacga ccgataatag
    32701 cggttgcgat gccttcacgc aggatttttc cacggcgggc agtacggagg agattttcta
    32761 gaagagcttg gaactggaga gttttctcgc ggaccagctc tgtcgtcgcc tcctcgacgt
    32821 cgtcatactc agggtagtcg atgttgacct cgacctgtgc cagcgtgttg agaatctcct
    32881 ggcgggtgtc gttaatgagc tgggagaggg agccgtcaag ctggcggacg gcattgtgca
    32941 tggccttgtc ggtcttggca cggataacat ccatgacggc ctcggcctgt gtcaaatcca
    33001 cacgaccgtt gagaaaggct cgcttggtaa actcgcccgg ctcagccatt cgagcacctt
    33061 ggcgaatcag gagctggaga atttcgttgg taacggcgat gcctccgtgg gtattaatct
    33121 caatgacatc ttcgcgcgtg aaggtctttg gggaacgcat gacacccagt atgacctcgt
    33181 caagcacttg ccctgtcgca gggtcaataa tgtggccgta gttgaggctg tggctaggaa
    33241 ccgttgctaa gtcctttccc ttgaaaacct tgctggcaat ggcaaaagca tccgtcccag
    33301 acaggcggac aatcccgata gcgccctcac cgagaggggt ggaaatggct gttattgtgt
    33361 cgaattcttt ggtgatcata ataatgtgct ttctaactag aatctgtatt tacaagtaaa
    33421 atacttggat ataagagata gtttgttgct aatcaaggca gttttttggg ggatgggctc
    33481 aagcccagtg ccacttctca gagttcgtgt caacatctca gcgcagtggt tgattggctt
    33541 taacagtcca gtggactgtt aaaggttgga gataggattt gtgaagcaaa tctctgcaat
    33601 tcgtgtttca cactccaaat ccgacctcta cgactgttgc gaacaagttc gcttcatttc
    33661 caacctccaa cagtcactac tctgactgtt ggagctgtgc gggggtggga gtaaaatagt
    33721 ccggtggagt gaaacagttt agggaactgt ttcagctggt caccttaaaa ctagaaagtg
    33781 accatagaag ctgaacctac tgtattggaa gtgagggaaa ctcgttttga gatcaatcga
    33841 gttctttctc actccccaaa aactaacgat gaatagctga taaactagct ttagatggaa
    33901 gtgctgaact gtgaatacag gttcttaaat cttacttata agtttaacat ggaatgaaga
    33961 aaaaagcaca ttttagagat gctgatacaa agatatgtat tgaaaacgtt ttgaaaaagg
    34021 tgtaaaatag atgtggaata ataaagagaa agtaggtttt gtatgtcaaa cggtaaaatt
    34081 ttaggccttg atattggtat tgcttccgtc ggagtaggcg tcatagatgc acaaacggga
    34141 gaaatcattc atgcaagctc tcgtattttt ccctctgcaa atgctgctaa taatgcagaa
    34201 cgccgaactt ttcgtggaag tcgtcgattg attaggagaa aaaaacatag aatt
//
LOCUS       DASGBY010000005        32631 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.005, whole genome shotgun sequence.
ACCESSION   DASGBY010000005 DASGBY010000000
VERSION     DASGBY010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 32631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32631
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.005"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..242)
                     /locus_tag="U1396_000173"
     CDS             complement(<1..242)
                     /locus_tag="U1396_000173"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5341402.1"
                     /translation="MKLSYEDKIEIYELRQSGQSIKNLSNQFTISESVIQYMLRLIDR
                     YGINIVKKGKNTYSPPELKQEMIDKVLLQKQSSLSVS"
     gene            complement(325..1053)
                     /locus_tag="U1396_000174"
     CDS             complement(325..1053)
                     /locus_tag="U1396_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5341403.1"
                     /translation="MRLDKFLVDCGVGSRTEVKKLLKNKQVTVNGQVETSPKQQIDEK
                     SDQIAVAGQVLSHETFVYYVLNKPKGVISATEDDRHRTVLDLLDNTARQKEVFPVGRL
                     DIDTHGLLLLTNNGQLAHVMLSPKKHVDKLYRAQVDGIMTQEDVERFAAGIELKDLTC
                     QPAQLTILSTDEAKQTSLVDITIREGKFHQVKRMVQACGKTVTDLQRLTMGPLRLDPK
                     LALGEYRRLTAAELKQLEVFGVEL"
     gene            complement(1044..1493)
                     /locus_tag="U1396_000175"
     CDS             complement(1044..1493)
                     /locus_tag="U1396_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341404.1"
                     /translation="MDYFYIMPLPQDLALEIANQWRYQPPLDAYTISANPETYAEMIS
                     PEARGDRFFAVIRNAALMGYFCIDQDGETVDIRLGMKPSLTGQGNGRAFYQAIEDYLV
                     EHVQPASIKLTVASSHQVAQKLFHALGFTEIEKQSEYIKMEKKLVCD"
     gene            complement(1500..1670)
                     /locus_tag="U1396_000176"
                     /pseudo
     CDS             complement(1500..1670)
                     /locus_tag="U1396_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028520.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            complement(1707..2870)
                     /locus_tag="U1396_000177"
     CDS             complement(1707..2870)
                     /locus_tag="U1396_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5341405.1"
                     /translation="MKRILEKASLLALSTMLVSTFAVSPAIPQMIEHFAQQGIAAAQV
                     ENLITVTSFAIMVTLLANGLVVRFLSERNIIIAGLLLMAIGGALPMFLTAYPLILLAR
                     ILLGLGIGLINARAINIIGNFFTGQERVQMMGLRGSAEVLGSAGLTLLVGWLTQFGWQ
                     PAFLVYLFALVILALFLLFVPKEELLARMEVKVEENAPKVKLDKTMWMMGIYLAFLAF
                     FVINVNTFLTIRIPQIVLAKGIGTAQQASLILSLMQVMGIVAGTVFSSLVGRLKGWLL
                     AVSYVVFGLAVVGIAFADNLWVLGLGGMVSGFFYSIILTIVFSQVTDRAPKALLNAVM
                     TIVLMGCNIGGATSAILPTYLEKLNPTPTGAFGIYAIGCALISAGLIYKQLKK"
     gene            3000..3614
                     /locus_tag="U1396_000178"
     CDS             3000..3614
                     /locus_tag="U1396_000178"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM5341406.1"
                     /translation="MSVIERLTKAAHLIDMDDIIREGHPTLRQVAEEVAFPLSDQEII
                     LGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQ
                     AYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKH
                     RIKLKGFNAIVVQHEIDHLNGIMFYDRIDPEHPFAVKEGMLVIE"
     gene            complement(3803..4588)
                     /locus_tag="U1396_000179"
     CDS             complement(3803..4588)
                     /locus_tag="U1396_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HEM5341407.1"
                     /translation="MTKQIHWDGALSQEGFDIIKGEGGVIVCPTKVGYIIMTADKAGL
                     ERKFDAKERKRNKPGVVLCGSMEELRELAQLTPEIDAFYQKHWDEDILLGCILPWKPE
                     AYAKLQAYGDGREELMTDVRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGK
                     GNRGKVEGIGERIASKVDLIIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPE
                     QGMDSRSISPCPVVIRKGLDIDKIMMHLSDHFNSWDYRQGEYY"
     gene            complement(4651..5244)
                     /gene="leuD"
                     /locus_tag="U1396_000180"
     CDS             complement(4651..5244)
                     /gene="leuD"
                     /locus_tag="U1396_000180"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEM5341408.1"
                     /translation="MHQFTTWTGTTVPLMNDNIDTDQLLPKQFLKLIDKKGFGKYLLY
                     AWRYLDDNYTDNPDFILNQPDYQGASILISGDNFGAGSSREHAAWALADYGFKVIIAG
                     SFGDIHYNNDLNNGILPIIQPKEVRDQLAQLAPDQEITVDLADQLIRTPFGEFPFDIE
                     QDWKHKLLNGLDDIGITLQYQDLITEYEGNRPSYWQE"
     gene            complement(5244..6635)
                     /gene="leuC"
                     /locus_tag="U1396_000181"
     CDS             complement(5244..6635)
                     /gene="leuC"
                     /locus_tag="U1396_000181"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEM5341409.1"
                     /translation="MSGKSIFDKLWDRHVITGQEGQPQLLYVDQHYIHEVTSPQAFDG
                     LREAGRQVRRPELTFATFDHNVPTVDIHNIRDVISKAQMDALAKNIEDFGIPHAAHGS
                     EHQGIVHMVGPETGRTQPGKFIVCGDSHTATHGAFGAIAFGIGTSEVEHVLATQTIWQ
                     VKPKRLLVEFVGQAQRGVYAKDFILALIARYGVDCGLGHVVEFAGPVIDRLSMEERMT
                     ICNMSIEFGSKMGIMAPDQTTFDYLRGRECAPADFDAAVADWKELYSDADTVYDKHLV
                     LDVSDLAPMVTWGTTPAMGVSFDEIFPAIRDHNDERAYAYMDLAPGQKAADIPVGYVF
                     LGSCTNARLSDLQLAARIVKGRKIAEQVTAIVVPGSRPVKRAAEKLGLDKIFMEAGFE
                     WRDPGCSMCLGMNPDKVPAGVHCASTSNRNFEDRQGFGAKTHLCSPAMAAAAALYGRF
                     VDTRQLDILKEGV"
     gene            complement(6632..7683)
                     /gene="leuB"
                     /locus_tag="U1396_000182"
                     /pseudo
     CDS             complement(6632..7683)
                     /gene="leuB"
                     /locus_tag="U1396_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910859.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
     gene            complement(7692..9254)
                     /locus_tag="U1396_000183"
     CDS             complement(7692..9254)
                     /locus_tag="U1396_000183"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEM5341410.1"
                     /translation="MRVIEFLDTTLRDGEQTPGVNFSIKEKVTIAKQLEKWGISAIEA
                     GFPAASPDSFEAVRQIAAAMTKTAVTGLARSVKSDIDACYEALKDAKYPQIHVFIATS
                     PIHREFKLQKTKEEILAQITEHVSYARERFEVVEFSPEDATRTELDYLLEVVQTAVDA
                     GATYINIPDTVGFTTPQHYGEIFRHLITNVKSDREIIFSPHCHNDLGMAVANTLSAIK
                     NGAGRVEGTINGIGERAGNAALEEVAVALEIRKDFYDVTSPIVLKEMLNTSELVSRFS
                     GIAIPRNKAVVGGNAFSHESGIHQDGVLKNPLTYEIITPELVGVKKNSLPLGKLSGRH
                     AFVEKLKELDLYFEEGDVASLFARFKNLADKKEKITDADIRALVAGTEISNRDGFQFK
                     DLRLDSQSDGSIQAQVIFINQDEEEVVVAESGKGSVEAVFNAVDQFFHQEISLERYHI
                     DAITDGIDAQARVLVAVENKATETIFNASGIDFDVVKASAIAYIHANVMVQKENSGQI
                     DKKLSEKELPTS"
     gene            complement(9818..10051)
                     /locus_tag="U1396_000184"
     CDS             complement(9818..10051)
                     /locus_tag="U1396_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEM5341411.1"
                     /translation="MLTSIIAGAIIGLIAGALTSSDDRRGCLGNIILGLAGSWIGQLL
                     FGDWGPQFAGMALVPSVFGAVLLVAIFSSSRRN"
     gene            complement(10260..11501)
                     /locus_tag="U1396_000185"
     CDS             complement(10260..11501)
                     /locus_tag="U1396_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEM5341412.1"
                     /translation="MVLPNFKENLAKYAKLLVSTGINVQPGHTVQLTIGVEQAELARL
                     IVKEAYARGAKEVLVNWLDDVIARERLVNVDVELLEQVHPQRITEMNYLLERKASRLV
                     VLSEDPGAYDGVDPEKLSRNARALSQALNPMRQASQANKISWTLGAASGLEWAKKVFP
                     NAASDEEAVDLLWDQIFKTCRIYEEDPIKAWEEHEARLVAKAKVLNDEQFVKLHYTAP
                     GTDLVLGMPKNHLWEAAGSVNAQGEHFIANMPTEEVFTAPDYRVADGYVTSTKPLSYN
                     GNIIEGIKVTFKDGEIVDVTAEKGDEVMKKLVFDNAGARGLGEVALVPDKSPISQSGV
                     TFFNTLFDENASNHLAIGQAYAFSIEGGTEMSQEELKEAGLNRSDVHVDFMIGSNKMN
                     IDGIREDGTRVPIFRDGEWAI"
     gene            complement(12092..12694)
                     /locus_tag="U1396_000186"
     CDS             complement(12092..12694)
                     /locus_tag="U1396_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM5341413.1"
                     /translation="MSNFAKLQETRRSIYALGKDLPVSNEEVVALVEKAMKESPSAFN
                     SQSSRAVVLFGAESEAFWNEIAYSELEKVTPAEAFEATKGRLAGFAAGAGTILFFEDQ
                     DVVKGLQESFPLYAENFPIWSEQAHGINLYAVWLAFAEKNIGMNVQHYNPLVDAQVAE
                     KYGIPANWKLRAQAPFGSIAAPAADKDYMADSDLVKVFGN"
     gene            complement(12930..13601)
                     /locus_tag="U1396_000187"
     CDS             complement(12930..13601)
                     /locus_tag="U1396_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM5341414.1"
                     /translation="MKKRNILVELLKGIGLVLLSTILWTLILSFATPESSSGIYEPFP
                     GFTVIAGILTSFILHIIMKYNQLRQAEQAAKASKSHIVVIEERNQALMKKANRLVEKH
                     QNLEKETILDINKSVSKIRTVEEKTVMKSTKIESSQEFGQFLRQMPEFMANKHIERLL
                     NEIFETENNLAQWKISYNQQVEYFNTLLHQFPISVIAKIIRLKDLEFYKEHSLTDFTD
                     EMLGL"
     gene            complement(13613..18004)
                     /locus_tag="U1396_000188"
     CDS             complement(13613..18004)
                     /locus_tag="U1396_000188"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HEM5341415.1"
                     /translation="MSDKFQLLLQQIGMPLDARQSGAFSTATIEKVVLHKVSKLWEFT
                     FRFETPLPLMDYQLFKARLATEFEKVGNKIQFSIVSDAEAFEAGLVEAYYPEAFTEDL
                     CQSAGFKALFQPLEVAYRDGVLWIKGPETIDTDHFRKNHLPNLVEQYKRFGFGNLAVD
                     IQVCQEMTQQQAEIFHAQNEEIYQQANEENLAALEQLAQMAPPPEAAQPFVPEYKKNR
                     PAKVNIEKAEITPMIEVDSEENRIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTL
                     QKWAKNEEEAQKFDMVKKGNWLRVRGNVETNNFTRDLTMNVQEVQEVKKEIRKDLMPE
                     GEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKA
                     GIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETTGLSAVNNALIQIAASKM
                     HKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVA
                     HNATFDVGFMNVNYERAGLPIISQPVIDTLEFARNLYPDFKRHGLGPLTKRFGVALEH
                     HHMANYDAEATGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKAHVKHATLYVIN
                     QVGLKNMFKLVSLSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGID
                     EAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGN
                     VHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPKAHFRTTSEMLDEFAFL
                     GESLAHEIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEETVAELTYQKAFEIYGNPL
                     PDIIDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVGSRGSVGSSFVATMIGI
                     TEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLG
                     FDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAFRAGTVGTVAAKTAYGFVRGYERD
                     YGKFYRDVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQ
                     TTHFNFHDIDENVLKLDILGHDDPTMVRKLQDLSGIDPQTIPADDKGVMALFSGTEIL
                     GVTPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVWLGNAQD
                     LIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEEERNGYIQ
                     AMKDNKVPDWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIRAK
                     AFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD
                     LYKSHATDFLIEEDTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGT
                     LVEKMDEMGILGKMPEDNQLSLFDDLF"
     gene            complement(18083..19117)
                     /gene="dhaQ"
                     /locus_tag="U1396_000189"
     CDS             complement(18083..19117)
                     /gene="dhaQ"
                     /locus_tag="U1396_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DhaKLM operon coactivator DhaQ"
                     /protein_id="HEM5341416.1"
                     /translation="MVFIRNRQATIIEDYLDGFCRTNPKVKKVKGLPIVLQKVQDDHL
                     VPIISGGGSGHEPAHIGFVGKGMLTAAVYGEIFTPPTAEEVLAAIRAVDKGKGVFLIV
                     KNFEADLVSFRKAIELARQEGIAVKYIVSHDDISVDTKNNFRMRHRGLAGTILLHKIL
                     GAAALTGYSLDELEQLGLSLATEIATIGFATKSAYLPNAALPLFDLEEGQISYGIGIH
                     GEEGYRTVRFESSEQLANEIVNKLKLKFRWKEGEDYILLVNNLGSMSEVEQGIFLNDI
                     CQFLELEGLQLSYIKTGKFMTSLDMGGISVTLCRVKDRKWLDFLEAPTEAAAWWATNF
                     YRNQISQEMT"
     gene            complement(19128..19673)
                     /gene="dhaS"
                     /locus_tag="U1396_000190"
     CDS             complement(19128..19673)
                     /gene="dhaS"
                     /locus_tag="U1396_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase transcriptional
                     activator DhaS"
                     /protein_id="HEM5341417.1"
                     /translation="MPTSLITKKRIAKAFKKQLSQKSFDKISVVDIMQEAGIRRQTFY
                     NHFLDKYELLDWIFETELQEQVTDNLTYISGIKLLDELLYYIESNQSFYRQLFEIKGQ
                     NDFVSYLEGYFMVLMEKIINEYQLQEGKMISQQDKHFLILYHANAWIGLIKEGLTQSP
                     CQIHSYWKQMVALVRESFVIL"
     gene            19821..20810
                     /gene="dhaK"
                     /locus_tag="U1396_000191"
     CDS             19821..20810
                     /gene="dhaK"
                     /locus_tag="U1396_000191"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003049938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM5341418.1"
                     /translation="MKKIINQPERVVDEMLKGLVFMHQDLVDRIDGFDVIIRKAEKTG
                     KVGIISGGGSGHEPSHAGFVGKGMLSAAVCGAVFTSPTPDQILEAIKAADEGAGVFMV
                     IKNYSGDIMNFEMAQELAEMEGIEVDSVVVDDDIAVENSLYTQGRRGVAGTILVHKIL
                     GHAAETGKSLAEIKELADRLVPQIKTIGLALSGATVPEVGKPGFVLEEDEFEYGVGIH
                     GEPGYKKEKLQPSAKLAEELVEKLAEGFDIQDGEHYGVLINGLGATPLMEQYVFANDV
                     AQLLAKKGVVVDYKKIGNYMTSIDMAGLSLTLIKLEDPSWIDALQAPVEVVAW"
     gene            20821..21396
                     /gene="dhaL"
                     /locus_tag="U1396_000192"
     CDS             20821..21396
                     /gene="dhaL"
                     /locus_tag="U1396_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM5341419.1"
                     /translation="MDAKQALLWMETFNKKIQEDKDYLSELDSPIGDGDHGGNMVRGM
                     AAVMQELSEKDYETADQVFKVVAMQLLSKVGGASGPLYGSAFMGITKASQAGADLADT
                     LQAGLEMIQKRGKAELGEKTMVDVWIPVIAALRESQLTTEIIHKAVQGTKDIAATKGR
                     ASYVGERSIGHIDPGSFSSGLLFEAMLEAGL"
     gene            21393..21767
                     /locus_tag="U1396_000193"
     CDS             21393..21767
                     /locus_tag="U1396_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002960428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM5341420.1"
                     /translation="MTKVGILLVSHSKNLAQGIIDLVSEVAKDIPITYCGGLEDGSIG
                     TSFEIVQERVEANPADTLLAFFDLGSARMNMELAADFTDKQILIQTVPVVEGCYTAAA
                     LLQAGADLETILEQLKELTINK"
     gene            21777..22487
                     /locus_tag="U1396_000194"
     CDS             21777..22487
                     /locus_tag="U1396_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003062665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM5341421.1"
                     /translation="MNLIGELLGTFILVLLGNGVVASCILSKTKAENSGWLTIVLGWG
                     IAVTIAVYISGIFGPAHLNPAVTIAMASIGSLPWAQVPGFLLAQFAGAMLASIILYLH
                     FYPHWQETKDSGTILATFSTGPALRHTASNLLGEALGTAVLVMGILAIGPNNVSAGLG
                     PIIVGLIVFAIGFSLGSTTGYAVNPARDLGPRIMHAILPIPNKGDSDWSYSWIPVAGP
                     ILGGVAGAILYNLLLNML"
     gene            complement(22825..24687)
                     /locus_tag="U1396_000195"
     CDS             complement(22825..24687)
                     /locus_tag="U1396_000195"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEM5341422.1"
                     /translation="MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLP
                     LANRVIEKAKNIMREELDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGS
                     DFILGPTHEETVTLLARDAVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDG
                     YSFHASYESLDQTYDDYKAAYEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRT
                     DLDRWVVLDKSVASFEEIPEDVLEAIKEELLAWSVSGEDTIAYSSESGYAANLEMATS
                     EYKPSTAVVVEEDLVKIATPDAKTIDEVAAFLNIAEEQTIKTMLFMADGEPVVALLVG
                     NDQVNDVKLKNHLGADFFDVAGPADAEKIFGAGFGSLGPVGLPENIKIIADRKVQDVK
                     NAVVGANEDGFHYTGANAGRDFQVTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIF
                     KLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYR
                     YAWGINFPKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRNERVGVK
                     FSDSDLIGLPIRVTVGKKAADGIVEVKIKGTGDTVEVHVDQLLETLQILTKENE"
     gene            complement(24911..26170)
                     /gene="rseP"
                     /locus_tag="U1396_000196"
     CDS             complement(24911..26170)
                     /gene="rseP"
                     /locus_tag="U1396_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEM5341423.1"
                     /translation="MKGILAFIFIFGVIVVVHEFGHFYFAKKAGILVREFAIGMGPKI
                     FAHTGKDGTLYTIRILPLGGYVRMAGWGEDKTEIKTGSPASLSLNEAGVVTRINLSGK
                     QLDSLSLPMNVTSFDFEEKLEITGLVLEESKTYRVDHDATIVEEDGTEVRIAPLDVQY
                     QNATVWGRLMTNFAGPMNNFILGILVFIILFFMQGGVANPSSNAVSITEGGALQAAGV
                     VTGDKILSVNGNTTDSYTEVATIISKAATDATTAPSFDLVVEHDGKNRHVSVTAEQVD
                     GAYRIGISPILKTGFVDKIIGGFQEAGATALRVVTALKNLIANFDVKQLGGPVAIYKV
                     SSQAAEFGLASVLGLMAALSINLGIFNLIPIPALDGGKIVMNILEAIRRKPLKPETES
                     YITLAGVAVMVVLMIVVTWNDIIRVFF"
     gene            complement(26180..26986)
                     /locus_tag="U1396_000197"
     CDS             complement(26180..26986)
                     /locus_tag="U1396_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEM5341424.1"
                     /translation="MTNDLQKRVIFGGIALAIFIPFLLAGGMAFQFFVGLLAIIATAE
                     LIKMHRLAPNSIEGVLAMLASLVLALPLQNYLTFLPTDGNYTAYAIVVFLLLGSTVFN
                     IGHYNYSDVVFPIASSFYVGIGFHSLILARMDGLNKVFFALCLVWATDIGAYLIGRQI
                     GRRKLLPKVSPNKTVEGFAGGILSAVVVAIIFLIVDKSLLAGYSFGMMLLLVVIFSIF
                     SQFGDLVESAIKRHFGVKDSGKIIPGHGGILDRFDGMIFVFPIMHFFGLF"
     gene            complement(26996..27751)
                     /locus_tag="U1396_000198"
     CDS             complement(26996..27751)
                     /locus_tag="U1396_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEM5341425.1"
                     /translation="MFKFNFKKKESIETAIEVPKHIAVIMDGNGRWAKKRMQPRIMGH
                     KAGMDALQKVTKTASDLGVKVLTVYAFSTENWSRPEKEVKFIMNLPVEFYDKYVPELH
                     ANNVKIQMIGDHSKLPVPTLNALYKAEQKTKSNTGLILNFALNYGGRDEVTRAVKAIA
                     QDVLDAKFNPGDIDEKLIADYLYTGTLSPTLRDPDLVIRTSGELRLSNFLPWQTAYSE
                     LYFTDIAWPDFDGEALKLAIKEYNRRHRRFGGV"
     gene            complement(27865..28188)
                     /gene="yajC"
                     /locus_tag="U1396_000199"
     CDS             complement(27865..28188)
                     /gene="yajC"
                     /locus_tag="U1396_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM5341426.1"
                     /translation="MEGLFLPLVMVAMIGFMFYSQRKQQKQRQEALNQIKKGDEIVTI
                     GGLFGIVDEIDDKKVVLDVDGVYLTFERGAIRNRVASSNTTSAVVEEVAVETTEATPE
                     AAIEE"
     gene            complement(28298..29590)
                     /locus_tag="U1396_000200"
     CDS             complement(28298..29590)
                     /locus_tag="U1396_000200"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEM5341427.1"
                     /translation="MTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIV
                     IDGTKYKLHLIPSGIFFPEKISVIGNGVVVNPKSLVKEINYLHDSGVTTDNLRISDRA
                     HVILPYHIKLDQLQEESKGENKIGTTNKGIGPAYMDKAARVGIRIADLLDKEIFAERL
                     RTNLAEKNRLFEKMYESTPIEFDEIFEEYYAYGQEIKKYVTDTSVILNDALDQGKRVL
                     FEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGP
                     FPTELHDEIGDRIREIGKEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVL
                     SGLETLKICVAYDLDGERIDHYPASLEQLKRCKPIYEEMPGWSEDITGVRSLDELPEA
                     ARNYVRRISELVGVRISTFSVGPGREQTNILESVWSAK"
     gene            29955..32186
                     /gene="gshAB"
                     /locus_tag="U1396_000201"
     CDS             29955..32186
                     /gene="gshAB"
                     /locus_tag="U1396_000201"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HEM5341428.1"
                     /translation="MLQKLSPNSPILQATFGIERESLRINSNHRVAQTPHPHKLGSRS
                     FHPYIQTDYSEPQLELITPIAQSTKEARRLLGAITDVAARSMDKQEYLWPLSMPPVIS
                     EEEIQIAQLDSDYEYQYRVGLGERYGKLVQSMSGIHYNFELGKDLTQQLFELSEETDF
                     IAFKNTLYLKLAQNFLNYRWLLTYLYGASSLAEKGFLTTEVGCVRSIRNSKYGYVNSD
                     NVHISFSSLQQYVADIEQAVQSGQLSAEKEFYSSVRLRGAKTSRDYLSKGISYLEFRS
                     FDLNPYDPLAISQETLDTVHLFILSLLWLDQLTDVDNTLAKADKLNNLIALSHPHTPL
                     PNDADATPILTAMKAIVLHFGLDDYYGQLIAHAEAALQDPRLTLSGKIAEQVEDGSLE
                     KFGQQQGQVFHDYAWTAPYALKGYENMELSTQMILFDAIQLGLNVEILDEEDQFLKLW
                     HGDHVEYIKNGNMTSKDNYVIPLAMANKVVTKKILDQAGFPVPAGAEFANKTDALRYY
                     GQVTSSAIVVKPKSTNFGLGISIFQEPASLADYEKALDIAFSEDSHVLVEEFVAGTEY
                     RFFILDGKCEAVLLRVAANVVGDGSSTIRELVEQKNQDPLRGRDHRSPLEIINLGDIE
                     LLMLEQQGYTPDTVLPEGVQAFLRGNSNISTGGDSIDMTDQMDESYKQLAAAMATAMG
                     AWACGVDLIIPDRTKPASKEDPNCTCIELNFNPAMYLHTYTYAGPGQSITPKILKKLF
                     PEL"
BASE COUNT         9112 a         7972 c         6706 g         8841 t
ORIGIN      
        1 gagactgaca gactcgactg cttttgaaga agtactttat caatcatttc ctgcttgagt
       61 tctggaggag aataagtgtt cttacctttc ttgacaatgt ttattccata cctatcaatc
      121 agtcgaagca tatattggat aacagattct gaaatagtaa attggtttga caagttcttg
      181 atagactgac cactttggcg tagttcatag atttcgattt tatcttcata gctcaatttc
      241 ataaaaatag caccccaaat gttagatttt ttctgtctaa cttttggggt gcagttcaat
      301 cgggagcaag tctcttctat ttatctataa ttccacacca aagacttcta attgctttaa
      361 ttcggcagca gtcaacctgc ggtattctcc aagcgctaat tttggatcta agcgaagagg
      421 ccccatggtc aatcgttgca agtctgtcac cgtctttcca caggcctgca ccatgcgttt
      481 gacctggtga aatttccctt ctcggatggt gatgtcaacg agcgaggtct gcttagcttc
      541 atctgtagag aggatggtca actgggctgg ttgacaggtt aagtctttca gctcaattcc
      601 tgccgcaaat cgttcgacat cctcttgggt catgatcccg tccacctgtg cacggtagag
      661 tttatcaaca tgttttttcg gagaaagcat gacatgagcc agctgaccgt tgttggttaa
      721 gaggagcaag ccatgggtat caatgtccaa gcgtccaact ggaaaaactt ccttctggcg
      781 agctgtatta tctagcaggt ccaagacagt ccgatgacgg tcatcctcgg ttgctgaaat
      841 aactcccttg ggtttgttca atacataata aacaaaggtt tcatgactca agacctgacc
      901 tgctactgca atctgatctg acttttcatc aatctgctgt tttggggagg tttctacttg
      961 gccgttgact gtgacttgct tgtttttcag gagtttcttg acttctgtcc gactgccaac
     1021 accgcaatcc actaaaaatt tatctaatcg catacgagtt tcttttccat tttgatatat
     1081 tctgattgct tttctatttc tgtaaaacca agagcatgaa agagtttttg agcaacttga
     1141 tgagagctag caactgtcag tttgatacta gctggctgaa catgctctac taaatagtct
     1201 tcaatagcct gatagaaagc tctgccattt ccctgacctg tcaaagaagg tttcataccc
     1261 aaacgaatgt caacggtctc gccatcttgg tcaatacaga aatagcccat gagggcggca
     1321 ttgcggatga ctgcaaaaaa gcggtcccca cgcgcctctg gtgagatcat ctcagcataa
     1381 gtctcggggt ttgcactaat cgtataggca tccaaaggtg gttgatagcg ccattggtta
     1441 gcaatttcca atgccagatc ctggggcagg ggcatgatgt aaaagtaatc cattcttcgg
     1501 aaattttttg ccaaattttt aatccgacgg ttttgggtgg cgtaactatc tgtctgataa
     1561 acataatcca catagcccaa ctgataggag ggaatcatgt ccttaaaaat caactgaaca
     1621 tcctcgggaa aacgtagtat taattcattt aagcggttat tttctaacat aagaatatta
     1681 taccaaaaag gagcggaaat ccgctcctac ttcttcagtt gtttataaat caagcctgcg
     1741 cttatcaagg cacagccgat ggcgtaaata ccaaaggcac ctgttggggt tgggttgagt
     1801 ttttccagat aagtcggtaa gatagcagat gtcgcaccgc cgatattgca gcccataagg
     1861 acgattgtca tgaccgcatt gagcaaggcc ttgggtgcac ggtctgttac ctgactaaag
     1921 acaatggtta gaatgatgct gtagaaaaat cctgacacca tgccaccgag tcccagcacc
     1981 cagagattat ccgcaaaggc aatgccgaca accgcgagtc caaagaccac gtaggaaaca
     2041 gctaaaagcc aacccttcaa acgaccaacc aggctactaa agaccgtccc tgccacaatc
     2101 cccatgacct gcataagact gagaatgaga ctggcttgct gagcagtacc gatgcccttg
     2161 gctaaaacaa tctgaggaat acgaatggtc agaaaggtat tgacgttgat aacaaagaag
     2221 gctaagaatg ccagataaat tcccatcatc cacatggtct tgtccagttt gaccttgggc
     2281 gcgttctcct caacctttac ctccatgcga gccagcaatt cctccttggg aacaaagaga
     2341 aggaagagag ccaagatgac caaggcaaaa aggtagacca agaaggcagg ttgccaacca
     2401 aactgggtca accaaccgac aaggagggtg agccctgcac ttcccaaaac ctctgctgaa
     2461 ccgcgcaagc ccatcatctg tacccgctcc tgaccggtga aaaaattacc gatgatgtta
     2521 atggcacgcg cattgattaa gccaatcccc aaaccaagca agatgcgagc caataaaatc
     2581 agaggataag cagttagaaa catgggcaaa gctccaccga tggccataag caaaagccct
     2641 gcaatgataa tgtttcgttc agacaagaaa cggacaacta gaccatttgc caatagagta
     2701 accataatag caaaggaggt caccgtaatt aagttttcca cctgggccgc tgcaattccc
     2761 tgctgggcaa aatgctcaat catctgtgga atagctggcg agacagcaaa tgtcgaaacc
     2821 agcatggtgg atagggccaa caaactggct ttttctaaaa ttcttttcat ttttctccct
     2881 ttcaacgttc gtcttttact agtataacag atttgaaagc gaatggatag aaaagtccga
     2941 cttttattct ctcccatttc atgctatact tatcttaact atattcaaag gagagaatca
     3001 tgtctgttat tgaacgattg acaaaagctg cccatttgat tgacatggat gacatcatcc
     3061 gtgaagggca tccaacccta cgccaagttg ccgaagaagt tgcatttcca ctatctgatc
     3121 aggaaattat tttaggcgaa aaaatgatgc agttcctcaa acattcgcag gatcctgtca
     3181 tggctgaaaa aatgaaactc cgtggcggag ttggtctagc tgcacctcag attgacgttt
     3241 ccaaacgcat cattgctgtc ttagtcccaa atccagaaga tgaggaaggc aatccacctg
     3301 cccaagccta ctccctccaa gaggtcatgt acaaccctaa aatcgtggca cattctgtcc
     3361 aagaagctgc tatggaaggg ggcgagggct gcctatccgt tgaccgcgaa gtccaaggtt
     3421 acgttgtccg ccatgcgcgc gtgactgttg attacatgga caaaaacgga gaaaagcacc
     3481 gtatcaaact caaaggcttt aatgccatcg tggtccaaca cgaaatcgac cacctcaacg
     3541 gtatcatgtt ctacgaccgc attgacccag aacacccatt tgccgttaaa gaaggcatgt
     3601 tggtaattga ataaacataa gaaactgact gaaaaatttt cagccagttt tttatgtgag
     3661 tacgaaaaaa cgaccctttc ggatcgatct caataatagt cttttagttt acttttagta
     3721 ctaggcaacg agccgcaggc ataactggag ttaggcaagg tgagttaacg acgtaataaa
     3781 agataaacta aatgacgata tcttagtaat attccccttg tctgtagtcc caagaattga
     3841 aatggtcaga caagtgcatc atgattttat caatgtccag acccttacgg ataacaactg
     3901 ggcatgggct gatagaacgg ctatccatgc cttgttctgg aatgagttta ccatctttgt
     3961 ctaccataga caccataacc ccttgctcat agcgagtttc aatggtcttg tctggctgga
     4021 tagatgccac atagtcatcc gcctcgataa tcaaatccac cttagaagcg atacgctcac
     4081 cgataccttc taccttacca cgatttccct tacctgacgg gttagcagat gacgcataga
     4141 ccatacgacc ttctttttcc cacatttcct tggcaatctg ctcgccagct acaccaaact
     4201 tgataacaaa gcaagaagtc ccacgaacgt cggtcatcag ctcttcacga ccatcgccat
     4261 aggcttgcaa cttagcataa gcctctggtt tccaaggtag gatacacccc aacaaaatgt
     4321 cctcatccca atgtttttgg tagaaggcat caatctcagg agtcaactga gccaactcac
     4381 gaagctcctc catgctacca caaaggacta cgcccggctt attacgctta cgctctttag
     4441 cgtcaaactt acgctccaaa ccagccttgt cggcagtcat gataatataa ccaaccttag
     4501 tcgggcagac aatcacgcct ccctccccct tgataatgtc aaatccttct tgtgaaagtg
     4561 cgccatccca gtgaatttgt ttcgtcataa tagtttcctc ttttcttttg ttccatagca
     4621 gagcgatctg cttgttttct aatctttatt ttattcttgc cagtagcttg ggcgattccc
     4681 ctcatactca gtaatcaaat cctgatactg aagggtaatc ccaatatcat ctaagccatt
     4741 gagcaacttg tgtttccagt cttgttcgat gtcaaatggg aattccccaa aaggcgtccg
     4801 tatcaactga tctgccaagt caaccgtgat ttcttggtca ggagccagct gagctagttg
     4861 gtccctgact tctttgggct ggataatggg cagaatgcca ttgttcaagt cattgttgta
     4921 atgaatatct ccaaaggagc ctgcaatgat aaccttgaag ccataatctg ccagagccca
     4981 agcagcgtgt tccctagaag aacctgctcc gaagttatcc ccagatatga ggatactagc
     5041 gccttgatag tcaggctggt tgagaatgaa atcaggattg tccgtgtagt tatcgtccaa
     5101 gtaccgccaa gcatatagca aatacttgcc aaagcccttt ttgtcaatca gcttgagaaa
     5161 ctgcttgggc aagagctggt cggtatcaat attatcattc atgagcggaa cagtcgtccc
     5221 tgtccatgtg gtaaattggt gcattagact ccctccttga gaatgtctag ctgtctggtg
     5281 tcgacaaaac gtccataaag cgcagctgcg gcagccatcg caggactaca caagtgggtc
     5341 ttggccccaa agccctgtcg gtcttcaaag tttcgattac ttgtagaggc gcagtggaca
     5401 cccgcaggga ccttgtctgg attcatgccc agacacatgg agcaaccagg atcccgccac
     5461 tcaaaaccag cctccataaa aatcttgtct agaccaagct tttctgcagc tcgcttgaca
     5521 gggcgactgc ctggtacgac aatagccgta acctgctctg ctattttccg ccccttaaca
     5581 atcctagctg ccagctgcaa atcgctgagg cgagcattgg tacaggagcc taggaagaca
     5641 tagccaacgg gaatgtccgc agccttttgc ccaggagcta agtccatgta agcataggcc
     5701 cgctcgtcgt tgtggtcacg gatggctggg aagatttcgt caaagctaac ccccatagca
     5761 ggcgtcgttc cccaagtgac catgggtgcc aagtctgaca catcaaggac caggtgcttg
     5821 tcatagacgg tgtccgcatc cgagtagagc tccttccagt ctgccaccgc cgcatcgaag
     5881 tccgctggtg cacactcccg acctcgcagg tagtcaaagg tggtctggtc tggagccata
     5941 atgcccatct tagagccgaa ctcaatggac atattgcaga tagtcatccg ctcttccatg
     6001 ctgagtcggt cgatgacggg tcctgcgaac tcgaccacat gacccaaacc acaatccacg
     6061 ccgtagcggg caatcagagc caggataaag tccttggcat agacacctct ttgcgcctga
     6121 ccgacaaact ctactaagag tcgcttaggt ttgacctgcc aaatggtctg ggtagcgaga
     6181 acgtgctcca cttcagaagt accaatccca aaggcaatag ctccaaatgc tccgtgagtc
     6241 gctgtatggc tatctccgca gacaatgaac ttacctggct gggtcctgcc tgtttctggt
     6301 ccaaccatgt ggacaatccc ctgatgttcc gaaccgtggg ctgcgtgggg aatgccgaaa
     6361 tcttctatat tcttagccaa ggcatccatc tgagccttgg aaatgacatc acggatattg
     6421 tgaatatcaa cggttggtac gttgtggtca aaagtcgcaa aggtcaattc tggccgacgg
     6481 acctgacgtc ctgcctctcg cagaccatca aaagcctggg gactggtcac ctcatgaata
     6541 tagtgctggt ccacatagag gagctggggc tgaccttcct gccctgtaat cacatggcgg
     6601 tcccagagct tatcaaaaat agatttgcca ctcatatctc ttccctctca atctgggcaa
     6661 taatggcctc cgtcatctcc ttggtagaag cggtcccacc gagatccttg gtgaaaatgc
     6721 cctctgcaaa gaccgcttca acagcttgac gaatggtctg acctgcttgg accaaatcaa
     6781 aactttcttc cagcatcatg gcaacagata gaatcatact gacaggattg gcaatgccct
     6841 gaccggcaat atccggtgcc gaaccatgga taggttcgta gagactggga cctgctaccg
     6901 catgactagc agaaggcaga acccccagcg ttcctgttaa tacgctggcc tcatccgaca
     6961 aaatatctcc gaaaagattt tccgtcacca agacgtcaaa tcgactagga ttggtaatca
     7021 agagcatggc tgcactgtcc accaactggt gctccaaggt cacatctggg tagtccttcg
     7081 ccacttcatc cgccaccttc cgccataatt ttgacgtcgc cagtacattc tgcttatcaa
     7141 tgctggtgac tttttttgtc ttttttgggc taggtcaaag gcagagcgga caactcgttc
     7201 aatctcttct gcctgatagg tattgctatc gctggcttgg tatgtttcca gaatatgctt
     7261 tccaaaataa attccgcctg tcaactcccg taccatgacc aaatccacac cgtccagccg
     7321 gtcggctttc agaggagaat agtctttcag gctatcaaaa attttcaccg gacggatatt
     7381 ggcaaagaga cctaattcct tcctaagttg aagcagacct tgttctggtc gaacagctgc
     7441 atcatcatac tgagggctac cgatagctgc taacaaaatc gcatccgcct gacggcaggc
     7501 ttgtaaggta gcatttggta gaggatggcc agccgcatca atcccagcgc caccaaaagc
     7561 tctctcctca atctcataat caaatcctac ttgcccagca acagcctcga ggacttctag
     7621 gccagcctcc atgatttcag gaccgattcc atcaccagcc aaggctacaa tttttttcgt
     7681 catatttcct cctagctagt tggcaactct ttctcagata atttcttatc aatctgtccg
     7741 ctattttctt tctgtaccat gacattggca tggatatagg caatggcaga agccttcacc
     7801 acgtcaaagt caataccaga ggcattgaag attgtttccg ttgccttgtt ttctacagcg
     7861 acaagcacac gcgcctgggc atcaattcca tcggtgatgg cgtcaatatg gtagcgttcc
     7921 aagctaatct cttggtggaa gaattggtca acagcattaa agacagcctc aacagaaccc
     7981 ttgcctgact ctgcaacaac cacttcttcc tcatcctgat tgatgaagat gacctgagcc
     8041 tgaatacttc cgtcagactg actatccaaa cgcaaatctt taaattggaa accatcacgg
     8101 ttgctaattt ctgtcccagc taccaaggca cgaatatctg catccgtgat tttttccttc
     8161 ttgtctgcca ggtttttgaa acgagcaaac aagctagcaa cgtctccttc ttcaaaatac
     8221 aagtctagtt cttttagctt ttctacaaag gcgtgacgac cagatagttt acccagtggc
     8281 agagaatttt tcttgacccc taccaactca ggtgtaatga tttcataggt caatggattt
     8341 ttcaagacac catcctgatg gataccagat tcatgtgaga aggcattgcc accaaccacc
     8401 gccttattgc gtggaatggc aatcccagaa aagcgagata ctaattccga agtattgagc
     8461 atttccttaa gaacaatcgg actagtcaca tcatagaaat ctttccgaat ttcaagggca
     8521 acagctactt cttcaagggc cgcattccct gctcgctcac cgataccgtt gatggtgccc
     8581 tcgacacgac cggcaccgtt tttaatggcc gatagggtat tggcaactgc catacctagg
     8641 tcattgtggc aatgcggact gaaaataatc tcacggtccg atttgacgtt tgttatcaag
     8701 tgacggaaaa tttctccgta gtgctgagga gtcgtaaagc cgactgtatc tggaatgttg
     8761 atgtaggtcg caccagcatc taccgctgtc tgcaccactt caagcaagta atccaactcc
     8821 gtccgtgtcg catcctctgg cgagaattcc accacctcaa aacgctcacg tgcatagctg
     8881 acatgttcag tgatttgcgc caaaatttct tctttggtct tttgaagttt aaattcacga
     8941 tgaatggggc tggtcgcaat gaaaacatgg atctgcggat acttggcatc tttcagagcc
     9001 tcataacaag catcaatgtc tgattttact gaccgtgcca aacctgtcac agccgtcttg
     9061 gtcatcgctg ccgcaatctg acgaaccgct tcaaacgaat caggactggc cgctgggaaa
     9121 cccgcttcaa tagcagaaat cccccatttt tccaactgct tggcgatggt cactttttct
     9181 ttaatcgaaa aattcacacc cggcgtctgt tcaccatctc gtaaagtcgt atctaaaaat
     9241 tcaatcacac gcataagaat acctttctaa acaatacaaa cttcaatact atcgtccttg
     9301 agtttacttt tagtactagc tccaacagtc agagtagtga ctgttggagg tgggaaatag
     9361 agcgaactta gttcgcatca aaaaccgcag gcataactgg agttaggcaa ggcgagttca
     9421 aataatgacg aaattatttg aagttggaaa taaggaaacg aagtttcctc attcgtcgaa
     9481 gtaataaaag taaactaaat gacgataaaa aagaaaacac ctcgaggata actacctgcg
     9541 agatgttgtc aacagcgccc gcttggtaag ccaaacagga ctaatgcatt ctttcagcac
     9601 tagcccgacc gtcgcaacaa caatgcaaag aattttgtag tgacaggttt catttgactt
     9661 tttcctttca gtattttaat tatttacaat gataccctac ttattttcac ttgtcaacag
     9721 aaaaatggaa attttctgaa aaatccgaac aatacggcaa ttcgtacaaa tccagataat
     9781 agaaaaccat gctccaattg aagcacggtt caggtgttta attccgtcta gaactgctaa
     9841 aaattgccac cagcaatact gctccaaaga ctgacggtac cagggccata ccagcaaact
     9901 gtggtcccca atcaccgaag agcagttgtc caatccacga accagcaagt ccaaggatga
     9961 tatttccaag acaaccacga cggtcatctg acgaagtaag agcacctgca atcaagccaa
    10021 taatggcacc tgcgataata cttgttaaca tcttgttttc ctccttattt acaaaatggg
    10081 agtgggaaag aactcgacta ggtcaaaaag agttcgtctt cccacccccg cacagttgat
    10141 taggtcagat ttggagtgca aaacacgaac aaatctgcca atcaaccact gcgctgagat
    10201 gttgatacga actctgagaa gtgatcctgg gctttttgcc cagtttcatt caaatatcat
    10261 taaatcgccc actcaccatc acggaagatt ggcacacggg taccgtcttc gcggataccg
    10321 tcaatgttca tcttgttaga accaatcatg aagtccacgt gaacatctga gcggttgaga
    10381 ccagcttctt tgagctcttc ttggctcatt tccgtaccac cttcgataga aaaggcatag
    10441 gcttgaccaa tcgccaagtg gtttgaggca ttttcatcaa agagagtatt gaagaaggtc
    10501 acgcctgatt gagaaatcgg actcttgtct ggaacaaggg caacttcacc gagaccgcga
    10561 gcaccagcat tatcaaagac taatttcttc atgacttcat cgcctttttc agccgtcacg
    10621 tccacgattt caccgtcttt gaaggttacc ttgatgcctt cgatgatgtt accgttgtag
    10681 ctgagtggtt ttgtagacgt tacataaccg tctgccacac ggtagtcagg tgctgtgaag
    10741 acctcttctg ttggcatgtt ggcaataaag tgttcacctt gggcattgac cgaaccagcc
    10801 gcttcccaca agtgattctt cggcataccg agaacgaggt cagttcctgg tgctgtgtag
    10861 tgcaatttga caaactgctc gtcgttaagc accttagcct tagccaccaa gcgtgcttcg
    10921 tgctcttccc aagccttgat tggatcttcc tcgtagatac ggcaagtctt gaagatttgg
    10981 tcccaaagga ggtccactgc ctcttcgtca gacgctgcat ttggaaagac ttttttagcc
    11041 cattccaaac cagaggctgc accgagtgtc cagctgattt tgttagcttg ggatgcttgc
    11101 cgcattgggt tcaaagcctg gctgagtgca cgagcgttgc gagacaattt ctctggatcc
    11161 acgccatcgt aagcacctgg atcttctgac aaaacaacca aacggctagc cttacgctcc
    11221 aaaaggtagt tcatttcagt gatgcgttgt ggatgaactt gttccaagag ttccacatcg
    11281 acattgacca aacgctcacg agcaatcaca tcgtccaacc agttgaccaa gacttcctta
    11341 gcaccgcggg cgtaagcttc tttgacaatc aaacgagcca actcagcctg ctccacacca
    11401 attgtcaact gcaccgtgtg accaggttgg acattgatac ctgttgaaac caagagttta
    11461 gcatatttag cgagattttc tttaaaattt ggtaatacca tctttttctc ctttgtactt
    11521 tgagataccc tattattgta tcatatttta agctagacag ataaaaaaac ttcctgctga
    11581 tgcaggaagt tagctctggg agatagttga agcttggaga tgaaacgaat ggagttcgtg
    11641 tcagcaagcc gcaggcataa ccctgctcct ctcttgtttt aagggaacag gccgaaaaac
    11701 tccactggag cttttcactc atcaaggtca gctgacaacg gatatttcca attttcgcag
    11761 ggtaaagttt acagtttgct tttagtacta ggcaacgagc tacaggctgc ttcaacagtc
    11821 agggtagtga ctgttgaagg ttggaaatct tacttacgat agtaagtaac gctcgtaacg
    11881 tacgccaaag cgagttcaaa caatccagtg gattgtttga agttggaaat aaggaaacga
    11941 agtttcctca actgccgacg taataaagca aactgaaata aattatatat actcaatgaa
    12001 aattggaatc agactaggcg acgtagatgt agatagaact taagttcatc acatcaagtc
    12061 aacaacgtct gatcccaatt ttcgcagagt attagttacc aaaaaccttt acaaggtcag
    12121 aatccgccat atagtctttg tctgctgctg gagctgcaat gcttccgaat ggtgcttggg
    12181 cacggagttt ccagttagct gggataccgt atttttcagc aacttgtgca tcaaccaatg
    12241 ggttgtagtg ttgtacgttc ataccgatat ttttctcagc aaaggccaac catactgcgt
    12301 acaagttgat accatgagct tgttcagacc agattgggaa gttttcagcg taaagtggga
    12361 agctttcttg taagcctttc accacgtctt ggtcttcgaa gaacaagata gtaccggcac
    12421 cagccgcaaa accagctaag cgaccttttg tagcttcaaa agcttctgca ggcgttactt
    12481 tttccaattc gctgtaggca atttcgttcc agaaagcttc tgactccgca ccaaaaagta
    12541 ccactgcacg gctagattgt gagttgaaag ctgatggaga ttctttcatg gctttctcaa
    12601 caagtgctac tacttcttca tttgatactg gcaagtcttt accaagtgcg tagattgaac
    12661 ggcgagtttc ttgaagtttt gcaaagtttg acatatgttt tcctcttttc tatttgttac
    12721 tacatagtag tttttatcac tatagggaga ttgtatcatt attactaagt agtgtcaaat
    12781 tcctagtctg acttttttat actccgtgaa aattaagcta gttacagcag atagtctgat
    12841 tttcataaag tagtgacaga gaatttacaa aaagatggca aaaaaagcct atcaaatact
    12901 taagatacat tgatagaccc ttctttatct tatagcccca acatctcgtc tgtaaaatca
    12961 gtcagcgaat gttccttata aaattccaag tccttcaggc gaatgatttt ggcaatgacg
    13021 ctaatcggaa actgatgcaa cagagtattg aaatactcaa cctgctgatt gtatgaaatc
    13081 ttccattgtg ctaaattatt ttctgtttca aaaatttcat tcagtaacct ttcaatatgt
    13141 ttattggcca tgaattccgg catttgacgc aaaaattgac caaattcttg tgaactttca
    13201 atcttggtgg atttcataac agttttttct tcaaccgttc gaattttgga aacggattta
    13261 ttgatgtcca aaatggtttc tttttcaaga ttctggtgtt tttcaaccaa gcggtttgct
    13321 ttcttcatca aggcctgatt gcgctcttca ataacaacga tatgactttt actagctttc
    13381 gcggcttgtt cagcctgacg aagttggtta tacttcataa tgatatggag aatgaaactc
    13441 gttagtatac cagcaatcac agtaaaacct ggaaaaggtt cgtaaatacc tgatgatgat
    13501 tccggtgtgg caaaagataa gatcaatgtc cacaagatag tagaaagcag tactagacca
    13561 attcctttta ataactcaac taaaatattt ctttttttca tcatttcctt ttttaaaaca
    13621 aatcatcaaa gagactcaac tggttatcct ctggcatttt accgaggatg cccatttcat
    13681 ccattttttc aacaagcgta cctgacaatc caccacgttt acggagttct gtcttggaga
    13741 gaaattctcc ttcggcacgc gccgccacaa cctgcttggc aacgttctct cccagaccat
    13801 ccatagcgac aaatggtggg atgagggtat cttcttcaat cagaaagtcg gtcgcatggg
    13861 atttgtagag gtccaactta ccgaacttga agccacgttc cagcatttca tttaccaatt
    13921 caagtgtggt atagagatcc tgctcaacgt tcgaagcttc attgtttttc ttcttgaggg
    13981 cgatttcttc catcttagcc ttgactcgtt ccaagccacc ggacatggtt gccaaatcaa
    14041 atgccttggc ccgaatagag aaataagcgc aatagtagta aagtgggtga tgaaccttga
    14101 aataggcaac ccgcaaggcc atcataacgt aggcagccgc gtgggcttta gggaacatgt
    14161 acttgatttt tccacaggat tcgatgtacc agtctggcac cttgttatcc ttcatggctt
    14221 gaatgtagcc atttcgctct tcctcagaaa tcttgagcca caagcccttc cgcacccgct
    14281 ccatgatatt aaaggccatc ttaggtggca aacctgcgtg catgaggtaa accatgatgt
    14341 catcccgaca accgataaca gtagatagat tagcaattcc tgccttaatc aagtcctggg
    14401 cattgcccaa ccaaacgtct gtaccgtgcg atagaccaga taactgcaag agttccgaaa
    14461 aagtggtcgg tttggtttcc tccaccatcc cccgtacaaa gttggttcca aattcaggaa
    14521 tgcccagcat acctgtcggt gtcccaatct gctctggggt aacacccaga atttccgtac
    14581 cagaaaaaag agccataacc cccttatcat cagcaggaat agtttgcgga tcgatgcctg
    14641 acaagtcctg caacttccga accatggttg gatcatcgtg tcccagaata tcgagtttca
    14701 agacgttttc atcaatatcg tggaagttaa agtgggtggt ctgccagctg gctgtcacat
    14761 catcggcagg atactgaaca ggggtaaagt catagacatc catgtagtca ggaaatacaa
    14821 taattccccc tgggtgctga ccagtcgttc gtttgacacc agctgctcca gcagccaggc
    14881 gttctacttc cacatctcta tagaatttgc cataatcccg ctcatagcct cggacaaaac
    14941 cataggcagt cttggcagct accgtaccaa ccgttcctgc acggaaggca ttttcttcac
    15001 caaaaatatc ccgaacatcc aaatgggcag acggttggtc atcccctgag aagttcaagt
    15061 caatatcggg aaccttgtct ccatcgaaac caaggaaggt ctcgaaagga atgtcctgtc
    15121 catctttttt atacttggtc ccacactttt cacaatcctt gtctggcagg tcaaaacctg
    15181 aaccatagga accatctgtg ataaattcac tgtgttgaca atttggacag acatagtgag
    15241 gaggcatagg gtttacttcg gtaatcccaa tcatggtcgc aacgaaactg gagccgacag
    15301 acccccgtga acccaccagg tagccccgct cgttggaacg gtgcaccaac atctgcgatg
    15361 ccaggtaaat cacggcgaat ccattaccta aaatggaagt cagttccttt tcgattcgca
    15421 ggtcgataat gtctggcaag gggttgccat aaatctcaaa ggctttctga taggtcaatt
    15481 ccgcaaccgt ttcctcggcc ttctcaatat aaggcgtata aaggtcggtc ttaaccacct
    15541 gaacatcttc aaaccggtcc agcatggcat tgggattggt aatgacaatc tcatgggcca
    15601 gactttctcc caagaatgca aactcgtcca acatctcgct ggtcgttcta aagtgggctt
    15661 ttggcagtgg tgctggctga gcgttctcac catttccgat agtccagtta atcggtgccc
    15721 cttgacctag agcacgaaca atgatttccc gatagatttc ctcttcgggg tcaatgtagt
    15781 gaacatttcc tgtcgccaga acaggcagac ctgccctacg tcctacctca atcaactgct
    15841 taatagtctc ttcaatctct gccatgtcct taaactgctc cttggcaatc atgggagcat
    15901 atagggcagg tggcataact tcgataaaat cataataggc tgccgtttta accgcttcat
    15961 ctatcccttt ggagagcaag tcatcgaaga cctcaccctc ttgacaggct gttcccaata
    16021 ttaaaccttc acgatgggca ttgagaacgg tccgtggaat acgtggaact ccttcaaaat
    16081 acttggtatt ggaaagagag accagtttga acatattttt caaaccaacc tgattaatca
    16141 catagagcgt ggcatgcttg acatgagcct tcttatagga atcctccgca atcagctccg
    16201 tatttagctg gttgagattg gtcaaattgt gcttctccaa ggcatctttt aggaagatga
    16261 agagcaggcg ccctgtcgcc tccgcatcgt agttagccat gtggtggtgt tcaagagcaa
    16321 caccaaaccg cttggtgaga ggacctaaac catgacgctt aaagtcggga taaaggttac
    16381 gagcaaattc caaggtatca atgacaggct ggctaataat aggtaagcct gctcgttcat
    16441 agttgacatt cataaagcca acgtcaaagg tcgcgttgtg ggcaaccatg acggaatctt
    16501 gacagaaatc ttgaaactca cgcagaactt gttctagagg tttagaacca cgcacatgct
    16561 catctgtgat tcctgtcaga tctgttgtaa attgactgag cggatgaccc ggatcgataa
    16621 actcatcaaa ttctgcaatg atattgccct tgtgcatctt agacgccgca atctgaatca
    16681 gggcattgtt aactgcagag agacctgttg tttccacgtc aaagaccaca taggtggcat
    16741 cagacaggac tacatctgct tcgttgtaag caataggcac agagtcctcg acaatattag
    16801 cctccatccc gaagagcggc ttaatcccag ctttacgggc agcatgatag ccatggggga
    16861 aggattgaac attgccgtgg tcggtaatcg ccaccgcctt gtgtccccag gctgctgcac
    16921 gcgccaccaa gtcctcaacg gcaggcaggg catccatagt agacatgttg gtatgggcat
    16981 gaaactcaac ccgcttctca ccctcaggca taaggtcctt acgaatttcc ttcttgacct
    17041 cctggacttc ctgtacgttc atagtcaaat cacgagtgaa attattggtc tccacattgc
    17101 ctcgcacccg caaccagttg ccctttttga ccatatcaaa cttctgggcc tcttcctcat
    17161 tcttagccca cttctgcaag gtaaaggacg aagtatagtc ggtcatctta aagttgataa
    17221 tgactcgccc cgtcttggtc gtcttctgct cgacctcaaa gaccagtccc tcaaagacaa
    17281 tccgattctc ctcgctatcc acctcaatca taggcgtaat ctcagccttt tcgatattga
    17341 ccttggcagg acgatttttc ttatattctg ggacaaatgg ctgagctgcc tctggtggtg
    17401 gcgccatttg agccagttgt tcaagggccg ccaagttttc ttcattagcc tgctggtaaa
    17461 tttcttcatt ttgcgcatgg aaaatctccg cttgttgctg cgtcatttcc tgacagactt
    17521 ggatgtccac cgcaagatta ccaaaaccaa atcgcttgta ttgctccaca agatttggca
    17581 gatgattctt ccgaaaatga tctgtgtcaa tggtttcagg accttttatc cacaaaacac
    17641 catctctata agccacctct aatggctgaa aaagagcctt gaagcctgca ctctggcaca
    17701 aatcttccgt aaaagcttct ggataatatg cttctaccaa accagcttca aaagcctccg
    17761 catcgctgac aatagaaaat tgaatcttat tgcccacctt ttcaaactcc gtcgccaaac
    17821 gagccttgaa gagttgatag tccatgagcg gcaagggggt ttcaaaacgg aaggtaaatt
    17881 cccaaagttt actgaccttg tgcaagacta ctttctcaat cgttgcagtc gaaaaagccc
    17941 ctgattgtcg tgcatcaaga ggcattccga tttgttgtag caagagttga aacttatctg
    18001 acatacttat ttcctttgta gttcgttaga aacattttac cataaatgag gtattttttc
    18061 ctgagtcagg aagaaaaaac tctcaggtca tttcctgaga gatctgattt ctatagaaat
    18121 tagtagccca ccaagccgca gcttctgtag gcgcctctaa aaaatccagc cattttcgat
    18181 ccttaacacg acagagggtg acagaaattc ctcccatatc aagactggtc ataaatttac
    18241 ctgtttttat ataggaaagc tgtaaacctt ctagctctag aaattggcaa atgtcattca
    18301 aaaagattcc ttgctcaacc tcagacatag atccaagatt attgaccaga agaatatagt
    18361 cttccccctc cttccagcgg aattttaatt ttaatttgtt cacaatttcg ttggctaact
    18421 gctcagagga ttcaaaacga acggtccgat agccttcttc tccatggata ccgatgccgt
    18481 aagatatttg tccctcctcc aaatcaaaca aaggcagggc agcattgggc aaataggccg
    18541 acttggttgc aaaaccgatg gtcgcaatct ctgttgccag agacagtccc agctgttcca
    18601 attcatctag gctatagcca gtaagggcag cagctcctaa tatcttatga agtagaatgg
    18661 tccctgcaag ccccctatgc cgcatacgga aattattctt agtatcgacc gaaatatcgt
    18721 catgggatac gatgtacttg actgcaattc cctcctgccg agccaattcg atggcttttc
    18781 taaaagagac aaggtctgcc tcaaagtttt ttacaattag aaaaactccc ttacccttat
    18841 ctactgcacg aatggctgcc aatacttctt cagcggttgg gggcgtaaat atttcaccat
    18901 atactgctgc agtcagcata ccctttccga caaatccaat atgtgccggt tcatgccccg
    18961 atccaccacc tgaaataatt ggaactaaat ggtcatcctg cactttctga agcacaatcg
    19021 gaagtccctt cactttcttc actttaggat tggttcgaca gaaaccatcc aaataatctt
    19081 caataattgt tgcctgtcta tttctaataa acaccatata ttaactccta caaaatcaca
    19141 aacgactcgc gaacaagagc caccatttgc ttccaataac tgtgaatctg acaaggtgac
    19201 tgtgtcagtc cttcctttat cagtccaatc caagcattag catgatagag aatcaaaaaa
    19261 tgcttatcct gttgggaaat cattttaccc tcctggagct ggtactcgtt gataattttc
    19321 tccatcaaaa ccataaagta gccttctaaa tagctgacaa aatcattttg ccccttaatc
    19381 tcaaagagtt gcctatagaa agattggtta ctctcgatgt agtacaaaag ctcatccaga
    19441 agcttgattc cactaatata ggtcagattg tcagttacct gctcctgcaa ttctgtctca
    19501 aatatccagt ccagcaactc atacttgtct aaaaaatggt tgtaaaaggt ttgacgacga
    19561 atccctgctt cctgcatgat gtcgacaact gagattttat caaaggattt ttgggatagc
    19621 tgttttttaa aagcctttgc aatccttttc tttgtaatca acgaggttgg catatgtcac
    19681 ttcctttcgc ttcctcttta ttatacccta tcatgctttt ctttggaaca aaagggacac
    19741 attggacaat ctgtcccttc cttttttctt ttggacaatg tagaatgaaa gcgcaaacaa
    19801 aaaaacaaag gagttttctc atgaaaaaaa ttatcaatca acctgaacgt gtcgttgatg
    19861 aaatgttaaa aggacttgtc tttatgcacc aagatcttgt cgatcgtatc gatggatttg
    19921 atgtgattat ccgcaaggct gaaaaaactg gtaaagtcgg catcatctca ggaggtggct
    19981 ctggtcacga accttctcat gcaggctttg tcggcaaggg catgttgtcc gccgctgtat
    20041 gtggcgcagt atttacctca ccaacaccag accaaatctt ggaagccatc aaggctgctg
    20101 acgagggagc tggcgtcttt atggtcatca aaaactactc tggcgacatc atgaactttg
    20161 agatggcgca agaattggcg gaaatggagg gcattgaagt ggacagtgtc gttgtggacg
    20221 atgacatcgc tgtggaaaac agcctctata cccaaggacg tcgtggtgta gcaggtacca
    20281 tccttgtcca caagattctc ggtcacgctg cagaaacggg caaatcgctg gctgagatta
    20341 aggaactggc tgaccgtctc gtcccacaaa tcaagactat cggcttagcc ctatcaggtg
    20401 ctacggtacc agaagtgggc aaaccaggct tcgtccttga agaggatgaa tttgaatacg
    20461 gtgtcggtat ccatggtgaa cctggctata agaaagaaaa actccaacca tctgctaaat
    20521 tggctgaaga attggttgag aaattggcag aaggctttga tattcaagat ggcgagcact
    20581 atggtgtcct tatcaacggt ctcggcgcaa cccctctcat ggaacaatat gtctttgcca
    20641 acgacgttgc tcaattgctg gctaaaaaag gtgtggtcgt tgactacaag aaaatcggta
    20701 actacatgac atcgattgat atggctggac tgtcattgac cttaatcaaa ctagaagacc
    20761 caagctggat tgacgctttg caggcccctg ttgaagtggt agcttggtag gagaaagact
    20821 atggatgcaa aacaagcact gctctggatg gagacattca acaaaaaaat tcaagaagac
    20881 aaagattatt tgagtgagct agattctcca attggagacg gagatcacgg gggcaacatg
    20941 gtgcgaggaa tggctgccgt catgcaggag ctatctgaga aagactatga gactgctgac
    21001 caagtcttta aggtggttgc catgcaactt ctcagcaagg ttggcggtgc ttccggtcct
    21061 ctctacggct ctgcctttat gggtattact aaagccagtc aagctggcgc tgatttggca
    21121 gatacgcttc aagcaggttt ggagatgatc caaaaacgcg gcaaggctga attgggcgag
    21181 aaaaccatgg tagacgtgtg gattcccgtc attgctgccc taagagaaag ccagctgaca
    21241 acggaaatta tccataaagc cgttcaaggt acaaaggata ttgctgcgac caagggacgc
    21301 gcgtcctatg ttggggaaag gtctattgga cacattgatc caggctcttt ctcatctgga
    21361 cttctctttg aagccatgtt ggaggcagga ctatgacaaa ggttggtatc ttactcgtat
    21421 cccattcaaa aaatttggcc cagggaatca tcgacctagt atctgaagtc gcaaaagata
    21481 ttcccatcac ctactgtggc ggactagaag atggtagcat cggtaccagc tttgaaatcg
    21541 tacaagagcg agttgaagca aaccctgctg ataccctcct tgcctttttc gacctaggta
    21601 gcgcccgaat gaacatggaa cttgctgccg attttacaga caaacaaatt cttatccaaa
    21661 ccgtaccagt cgtcgaaggt tgctatactg ccgcagctct cttacaggct ggagctgact
    21721 tggagactat tcttgaacaa ttaaaagaac tgacaatcaa taaataggag gtcattatga
    21781 atctgattgg agaattactt ggaactttca tactagtatt acttggaaac ggtgtggttg
    21841 catcctgcat cctctctaaa accaaggctg aaaatagcgg ctggctgacc atcgtactag
    21901 gatggggcat cgctgtaaca attgccgtct acatatcagg aatttttgga cctgcccacc
    21961 tgaatccagc tgtcactatc gcaatggcat ctatcggctc cctaccatgg gctcaagtcc
    22021 caggcttcct acttgcccaa tttgctggag caatgttggc atccatcatc ctctatctcc
    22081 atttctaccc acattggcag gaaacaaaag atagcggaac aatccttgct actttctcta
    22141 ctggaccagc tcttcgtcac acagcttcaa acttgctcgg cgaagctctt ggtacagctg
    22201 tcttagtcat gggaatcctt gcaattggtc ctaacaatgt cagcgctggc ctcggcccaa
    22261 tcatcgtggg acttatcgta tttgcaatcg gcttctcact aggatcaacg acaggctacg
    22321 cagtcaatcc agctcgtgac ttaggtcctc gtatcatgca tgccatcctt ccaattccaa
    22381 acaagggaga ttctgactgg tcttatagct ggatcccagt tgctggccca attcttggag
    22441 gagtcgcagg agctatcctc tataacctcc tactaaatat gttataaaaa aataggcttt
    22501 tggaaaaagc ccagcgcaac ttatcagagt tcgtatcaac atctcagcgc agtggttgat
    22561 tggcagattt attcgtgttt cacactccaa atctgaccta tacgactgaa gcgaacagag
    22621 ttcgcttcat ctccaacctc aaactatctc ccagacagtt tgagctgtgc gggggtggga
    22681 gtgaaacagt ctggggatag actgtttcag ctcaacaact taaaacgaaa aattgttgac
    22741 gaactctgtt tgacctagtc gagttctttc ccactcccat tttatcaaca aagacttggc
    22801 tattatcaac caagtctttt tctgttattc attttctttt gtaaggattt gcaaggtttc
    22861 aaggagttgg tccacatgga cttctacagt atcacctgtg cccttgattt tcacttcgac
    22921 gatgccatca gctgctttct taccaacagt cacacggatt ggcaagccaa tcaagtcact
    22981 gtcagaaaac ttaacgccga cacgctcatt acggtcgtca gttaatactt catagcctgc
    23041 accaaccaaa cttgcttcga tagactgagt caattccatc gccgcttcat ctttgacatt
    23101 gactggaatc aaatgcacat caaacggtgc caattcttta gggaagttga tcccccaagc
    23161 gtaacggtat tcgccttttg gtgtcttgtt aacaaagagg cgagcgtgtt gttcaagaac
    23221 ggctgacaag agacggctaa caccgattcc gtagcatccc atgataatcg gcatagaacg
    23281 accgttctca tccaagatgt tggcattcat gctgtctgaa tagcgtgtac cgagtttgaa
    23341 gatgtgacca atctcgatac cacgggcaaa gttgagaacc ccgtgtccat ctggagaagg
    23401 ctcgccttcc ttgacttcgc gaatatccac atactcagtc acttggaaat cacgccctgc
    23461 attggcacct gtgtagtgga aaccgtcttc gttggcaccg acaacagcat ttttcacatc
    23521 ttgaaccttg cggtctgcaa taatcttgat gttttctggc aagccaactg gtccaaggga
    23581 accaaaacct gcaccgaaga ttttttcagc atccgctggg cctgctacat caaaaaaatc
    23641 tgctccaagg tggtttttca acttgacatc gttaacttga tcattgccaa caaggagggc
    23701 aacaactggc tcaccgtctg ccataaagag catggttttg atagtttgtt cttccgcaat
    23761 attcaagaag gcggcaactt cgtcgatggt tttagcatct ggtgtagcaa ttttaaccaa
    23821 gtcttcttcg acgacaactg ctgtacttgg tttatattca ctagttgcca tttctaggtt
    23881 ggcagcgtaa cctgattcgc tagagtaggc aatggtgtct tcaccagaca cagaccatgc
    23941 caagagttct tccttgattg cttcaagaac atcctctggg atttcttcaa aagaagcaac
    24001 agacttgtcc aagacaaccc aacggtccag gtcagtacgg tctggtgtaa tagccataaa
    24061 ctcctggcta tccttaccac ccatggcacc accgtcaccg ataatggcct tgaactccaa
    24121 tcctgcacga gtgaagattg cctcgtaagc cgccttgtag tcatcgtagg tctggtccaa
    24181 gctttcatag ctagcgtgga agctgtagcc atctttcatg ataaactcgc gaccacggag
    24241 aagaccgtta cgagggcgtt tttcatcacg gtattttggc tggatttggt agatgttaag
    24301 cggcaactgc ttgtaagact ggaccgcatc acgcgccaat agcgtcaccg tttcttcgtg
    24361 ggttggaccc aagataaagt cagaaccctc acggtttttg agcttgtaga ggtcgtcacc
    24421 ataggtttca taacgacctg actcacgcca aatatccgcg gacaagaggg ctggtgccaa
    24481 aaattcaatg gcatcaatct tatcaagctc ctcacgcatg atattttttg ctttttcaat
    24541 cacacggtta gccaaaggca agtagctgta aataccagca gaaatctgac ggacatagcc
    24601 cgcacgtaac atcaaagcgt ggctaatcac cgacgcatcc gaaggcatct cccgcaaagt
    24661 agggataatc attttagact gtttcataat aagatacaaa gggcgtggaa accaaagcaa
    24721 aaataggaaa tcattgcagt gtgctggcac acaaaatgat ttatcttttt tgcacaggtt
    24781 tcagcccgtg ttcagttcct ttcatagttt tcagaacttc ctgcgtttag cacgcattca
    24841 attcctttcg tatttttcag aacatcctgc gtagcacgca ttcaattcct ttcataaatt
    24901 tcaaattatc ttagaagaag actcttataa tatcattcca agtgactact atcataagaa
    24961 ccaccataac ggctacacct gctagagtga tataagattc cgtctctggt ttgagtggtt
    25021 ttctgcgaat ggcttccaga atattcataa caatcttacc accatccaag gctggaattg
    25081 gaatcaaatt gaagattcca aggttaatgg agagcgcagc cattagcccc aatacagaag
    25141 ccaaaccaaa ttcagccgct tgagaactta ctttataaat agcaaccggt ccccccaact
    25201 gcttaacatc aaagtttgca attaggttct tcaaagctgt tacaacccta agagctgtcg
    25261 ctcccgcttc ttggaaacca ccgataattt tatcaacgaa accagttttc aaaatcggtg
    25321 aaataccaat tcgataggcc ccatctactt gttcagcagt aacggagaca tgacggtttt
    25381 tcccatcatg ctcaacaacc aaatcaaagc ttggggctgt tgttgcatct gtcgctgctt
    25441 tgctaataat cgttgcaact tctgtgtagc tgtctgtcgt gttcccattg accgaaagaa
    25501 tcttgtcccc tgtgacaaca cctgccgcct gcaaagcacc accttcagta atacttactg
    25561 cattgcttga tgggttggca acccctcctt gcatgaagaa caaaataata aatactagaa
    25621 tccctaaaat aaagttattc atgggacccg caaagttggt catcaaccgt ccccagactg
    25681 tcgcattttg atactgaaca tcaagtggag caatccgaac ttctgttcca tcttcctcta
    25741 caatcgtggc gtcgtgatca accctatagg tcttgctttc ttccaagacc aagcctgtga
    25801 tttccaattt ttcctcgaag tcaaaactgg ttacattcat tggcaaactg agactatcca
    25861 gttgcttacc agacaaatta atccgcgtca caacaccagc ttcattcagg ctgaggctgg
    25921 caggactacc tgtcttaatc tctgtcttat cttcacccca tccagccatt cgaacatagc
    25981 cacctagggg aaggatacgg atggtgtaaa gtgtcccatc cttacctgta tgagcgaaaa
    26041 ttttgggacc catcccaatc gcaaattccc tcacaaggat accagctttc ttggcaaagt
    26101 agaaatgacc aaattcatgg acaaccacaa tcacaccaaa tataaatata aatgctaaaa
    26161 ttcccttcat agtacctcct taaaataatc caaagaagtg catgattgga aagacaaaaa
    26221 tcataccgtc aaaacgatcc aggataccac cgtgtcctgg aataattttt ccagaatcct
    26281 tcacaccaaa atggcgttta atagcacttt ctactaaatc tccgaattgt gagaatatcg
    26341 agaaaatcac aactaacaac aacatcatgc caaatgaata gcccgccaac aaagacttat
    26401 cgacaatcaa gaaaatgata gcaactacca ccgcagaaag aataccgcct gcaaagcctt
    26461 caaccgtttt attcggtgaa accttcggca ataattttct ccgaccaatc tgacgaccga
    26521 ttaagtaggc accaatgtct gttgcccaga ctaaacagag ggcaaagaag actttattga
    26581 gcccatccat acgagccagt atcaaactat gaaagccgat accaacatag aaacttgatg
    26641 caattggaaa gactacatct gaatagttgt aatgaccgat attaaaaacc gtcgaaccaa
    26701 gcagtaaaaa tactacaata gcgtaggctg tgtaatttcc atccgtcggt aaaaatgtca
    26761 gataattctg gagcggaaga gccaagacta aactggccaa catagctaag acaccctcga
    26821 tagaatttgg tgctaggcga tgcattttaa tcaattcagc cgtagcaatg atggctaaca
    26881 ggcctacaaa aaattgaaat gccatcccac cagccaacaa aaagggaatg aaaatagcta
    26941 gagcaatgcc gccaaatatc actcgtttct gtaaatcgtt tgtcatacct tctccttata
    27001 caccgccaaa acgtctgtgg cgacggttgt attctttaat cgctaattta agtgcttctc
    27061 catcaaaatc aggccaagca atatctgtaa agtacagctc gctgtaggct gtttgccacg
    27121 gcaggaagtt gctaagacga agttcaccac ttgtacggat aactagatcg ggatcgcgta
    27181 acgttggtga taaggttcct gtatagaggt aatccgctat taatttctca tcaatatccc
    27241 caggattgaa cttggcatcc aagacatctt gcgcaatagc cttgactgcg cgagtcacct
    27301 catcacgacc gccatagtta agagcgaaat tgagaatcaa accagtgtta ctctttgtct
    27361 tttgttcggc tttataaagc gcattgagag tcgggacagg aagttttgaa tggtcaccaa
    27421 tcatctgaat tttgacatta ttggcatgga gttcaggaac atacttatca taaaactcca
    27481 caggtagatt catgataaac ttcacttctt tttccggtcg agaccagttt tctgtagaaa
    27541 aggcatagac agttaacacc tttactccca aatcagaagc cgtcttggta accttttgca
    27601 gtgcatccat accagcctta tgccccataa tacgtggctg catccgcttt ttcgcccaac
    27661 ggccattgcc atccataatc acagcgatat gcttagggac ttcaattgca gtttcaatgc
    27721 tttctttctt tttaaaatta aatttaaaca tggtattttc cttattgtat aatcgtttca
    27781 ttataccata tttttaccta ggatagcaaa aatcaggcag ggctaaaaca agagaaaacc
    27841 aaggtttccc tcggtttttc atccttattc ttcaattgca gcttctggag ttgcttctgt
    27901 cgtttcaact gccacttctt caacaactgc cgatgtagta tttgaacttg ctacacgatt
    27961 acgaatagca ccacgttcaa atgtcaagta aacaccatca acatcgagaa caaccttctt
    28021 atcatcaatt tcatcgacaa taccaaatag cccaccaatg gtcacaattt catcaccttt
    28081 tttgatttga tttagtgctt cttgacgttg tttttgttgt ttacgttgcg aatagaacat
    28141 aaaaccaatc atggcaacca tgacaagcgg caaaaataaa ccttccattt gtttacctct
    28201 tttattgttt gataagcatg attatatcaa attctggaca agaaagcaaa gttcgaccaa
    28261 acagaaaaag accgaacttt cgttcagtct tcgcacatta ttttgcgctc catacacttt
    28321 caaggatatt ggtctgttca cgacctggtc caactgagaa ggttgagata cgcacgccga
    28381 ccaattcgct gatacgacga acatagttgc gagccgcttc tggcaattca tccaggctac
    28441 gtacacctgt gatgtcttca gaccaacctg gcatttcttc gtagattggt ttgcaacgtt
    28501 tgagttgctc caaacttgca gggtagtggt caatacgctc accatccaag tcataagcca
    28561 cgcagatttt caaggtctca agacctgaca agacgtcaat cgagttgagg gacaagttgg
    28621 taatacctga cacacggcga ctatggcgca tcaccactga gtcaaaccaa ccgacacggc
    28681 gtggacggcc agttgtcgta ccgtattcct taccgatttc gcggatacgg tctccgattt
    28741 catcgtgcaa ttcagtcggg aatggtccgt caccaacacg gctagtgtag gccttacata
    28801 caccaacaac cttatcaatc ttgcttgggc cgacaccgct accgatcgtc acaccaccag
    28861 caactgggtt tgaagaagta acgaatggat aggtaccttg gtcaatgtcc aacataaccc
    28921 cttgcgcacc ttcaaataag acacgcttgc cttgatcgag ggcatcgttc aagataacag
    28981 aggtatctgt tacatacttt ttgatttctt gaccataagc gtagtattct tcaaagattt
    29041 cgtcaaactc aatcggagtt gactcataca ttttctcaaa caaacggttt ttctcagcca
    29101 agtttgttct caaacgctcc gcaaaaatct ccttgtccaa gaggtctgca atacggatac
    29161 caacacgcgc agccttgtcc atgtaggctg gaccgatacc cttgttggtt gtaccaatct
    29221 tgttctcacc tttagactct tcttgcaact ggtccaattt gatgtggtaa ggcaagatga
    29281 catgtgcgcg gtctgaaatc cgcaaattat ctgttgtcac acctgaatca tggagatagt
    29341 tgatttcctt caccaaagat tttggattga caaccacacc attaccgatt acagaaatct
    29401 tttctgggaa gaagattcct gacggaatca agtgcaattt atacttcgtg ccatcgataa
    29461 cgatagtgtg tccagcgtta tcaccgcctt gataacgtgc gattacttca gcattagcag
    29521 acaagaagtc tgtaatttta cccttacctt cgtcgcccca ctgggttcct acaacaacta
    29581 ctgatgtcat attcactctt tctctgaact ggctaaccag cccagccttt cttctacttc
    29641 tggcaggaat ctcacctgca agtttcgttt tacacactat tctatcaaaa aacgaacatt
    29701 ttttcaagaa attccaatat tttcgtttat atcagatgtt gtttcttgtt acattatttt
    29761 caatctcaaa atacgaacaa atgcttatcc tgaacatttt taaaattgtt tttgacggga
    29821 attcccgaag cctcccaatc ctgtcctctt atcaacttca ttttttcttt caaaacgtag
    29881 cagaaatttg tatttgctct ccaatctaga taaaattgga ataagacttt gacagaaata
    29941 taaaggactt agatatgtta caaaaattat caccaaacag ccccattctt caggctactt
    30001 ttggaattga gcgcgaatca cttcgcatca attcaaacca cagagttgca caaactcccc
    30061 atcctcataa actgggttct cgtagcttcc acccctatat ccagacagac tacagcgagc
    30121 cacagttaga gttgattaca ccaatcgctc agtcgactaa ggaagcgcgt cgcctactgg
    30181 gagccattac agatgttgct gcacgttcta tggataagca agaatacctc tggcccctat
    30241 ccatgccacc tgtgatttca gaagaagaaa tccaaattgc tcaactagat agcgactatg
    30301 agtaccaata tcgtgtcggt ttgggggaac gctatggcaa gctcgtccag tctatgtctg
    30361 gcatccatta taattttgaa ttaggaaaag acttaaccca acaacttttt gaattaagcg
    30421 aggaaacaga ttttatcgca ttcaaaaata ccctctacct caaattagca caaaacttcc
    30481 tcaactatcg ttggctctta acctacctat atggagcaag tagcctagcc gaaaaaggat
    30541 tcctaaccac ggaagtcggt tgcgtccgtt ccattcgtaa ttccaagtac ggctatgtca
    30601 actccgataa tgttcatatt tccttttctt ctctccaaca gtacgtggcc gacatcgaac
    30661 aagctgtcca atctggtcaa ctatccgctg agaaggaatt ttactcttcc gtccgactac
    30721 gtggagcaaa gactagccgt gactacctca gcaaggggat ttcttattta gaattccggt
    30781 ccttcgacct gaacccctat gacccgcttg ctattagtca agaaaccctt gatacagtcc
    30841 acctctttat cttatctctt ctttggctag accaactgac agatgttgat aacaccctag
    30901 caaaagcaga taaacttaac aatctcatcg ccctcagtca tccccacaca cctctaccta
    30961 acgatgccga tgccacgcca atcttgacgg ccatgaaagc catagttcta cactttggac
    31021 tggatgacta ctatggccaa ctcattgcac atgcggaagc agcccttcaa gaccctcgtc
    31081 tgaccctttc tggaaaaata gcagagcagg ttgaagatgg atctctagaa aagtttggtc
    31141 agcaacaggg acaagtcttt catgactatg cttggacagc cccttacgct ctcaagggct
    31201 atgaaaacat ggaactctcc acccagatga ttctctttga cgccattcag ctgggcttga
    31261 atgtggagat tttagatgaa gaagaccagt ttctcaaact ctggcatggt gaccatgtcg
    31321 agtacatcaa aaatggcaac atgacctcca aggacaatta cgtcattcct ctcgccatgg
    31381 ccaacaaggt cgtgaccaag aaaatcttgg accaggctgg ttttccagta cctgcaggag
    31441 ctgaatttgc aaacaagaca gatgccctgc ggtattacgg acaggtaacc agctctgcta
    31501 ttgtagtcaa accaaaatct accaacttcg gccttggcat ctctatcttc caggagccag
    31561 ccagccttgc agactatgaa aaagccctgg acatcgcctt ttcggaagat agccatgtac
    31621 tagtggagga attcgtggcg ggaaccgagt accgtttctt catccttgat ggcaagtgcg
    31681 aggctgttct gctccgcgta gcggccaatg tcgtggggga cggtagctca accatccgtg
    31741 aattagtaga gcaaaaaaac caagatccac tgcgagggcg tgaccaccgt tcaccgctgg
    31801 agatcattaa cttgggcgat atcgaactgc ttatgttaga acagcagggc tacacacctg
    31861 atacggtctt gccagaaggc gtccaagcct ttctgcgtgg caattccaac atctccaccg
    31921 gtggcgactc cattgatatg accgaccaga tggacgagtc ctacaagcaa ctggctgccg
    31981 ctatggcgac tgctatggga gcttgggcct gcggtgtaga tctgattatc cccgaccgca
    32041 ccaagccagc cagcaaggaa gatccaaact gcacctgcat cgaactcaac ttcaaccctg
    32101 ccatgtacct gcacacctat acttacgcag gacctggaca gagcattacg ccgaagattt
    32161 tgaaaaaatt atttccagag ctatagtttc ccattttcct tactttgtta gtacttacct
    32221 caaaggttcg tggaactttt gaaggccgga gatagagcaa agcacgttcg cctcaatagc
    32281 tgcaggttgc aagaacattc taggttggaa ataaggcttg cctcgcaagt cacttctgta
    32341 tagtacggca aagcgagttc aaaaaaatca gtggattgtt tgaagcggga aagccagaaa
    32401 cggagttcct cttgcgccga agtaaaaaaa gtcaacaaaa ggactatata tctgctttgc
    32461 ccttttgttc cttcacaaaa actcccaact aatgttaaac aaaatgaata tggcaccaag
    32521 aaaatcattt atatctcggt gctttttttg tgaaccaatt cccatcactc aaccgctttg
    32581 ttcgtttttt gtttcgtttt ccaatttatt tttactattt catttgaatt t
//
LOCUS       DASGBY010000006        30435 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.006, whole genome shotgun sequence.
ACCESSION   DASGBY010000006 DASGBY010000000
VERSION     DASGBY010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 30435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30435
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.006"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(139..447)
                     /locus_tag="U1396_000202"
     CDS             complement(139..447)
                     /locus_tag="U1396_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000420335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341429.1"
                     /translation="MELVMPNNYVVLEEEEMMYLDGGEIATATVLGIISAAVAAGGAA
                     YGAGLAAGTRVYYAGLRNSQYQKIKWQVRAAALVVGNVWGGIFMTGFKNAFYAKVTGK
                     "
     gene            complement(588..1991)
                     /locus_tag="U1396_000203"
     CDS             complement(588..1991)
                     /locus_tag="U1396_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001865356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEM5341430.1"
                     /translation="MKLYNKSELRYSRIFFDKRPPAYAFILIFSTLATLIIAFAVSAY
                     LPKNYIVKARGTSVITGTEYVSALSNGKIVTLHKKEGDSVKAGEVILSLSSGQEGLQT
                     ESLTKQLDKLKAKESLFQKYEQSLNEKVNYMANSGEEQEYYGKVEYYLSQLSSENYND
                     GSQYAKLQEEYTKLNKLVAEKSQLETDLSSYQSQLANLEAELATLSVQETAETNSDSE
                     TSSSSVDTSSNSIQLEQLNTKISEVKIKIETTTSSIQGKGTEIESLQSSIREMERSYN
                     DPTSQAYNTYAQLISELGTARAANNKSITELEANLGIATGQDRGLTVSASSDGTLHYV
                     TPLKQGMSVQQNQTVAEIAGSDREAYVEAFVLATDISRVTVGAEVDIAITGVNSQKFG
                     TLKGAVTQIDSGTITQETQNGNVSFYKVVVALEELTLKKDEEIVVLQKDMPVEARIVY
                     DNETYLDWILELLSFKQ"
     gene            complement(1988..2455)
                     /locus_tag="U1396_000204"
     CDS             complement(1988..2455)
                     /locus_tag="U1396_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5341431.1"
                     /translation="MSKLEVLENKKLVLKKVICKKLSSLQFEDLEQEIDKFYQHLQLL
                     KVQMFGPLIVKNSGTILHEDGTITVDYDLYVQAHDFRQYDKFYTVYEEIVCPHCVYVR
                     FEDSPEYLQYAYSKLDLHFYENDLETDGIIYTVYVNTNNETMTVDIFRPIISL"
     gene            complement(2448..4667)
                     /locus_tag="U1396_000205"
     CDS             complement(2448..4667)
                     /locus_tag="U1396_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HEM5341432.1"
                     /translation="MFKKYACTLQHDQSDCAAAVVSTVLLTYKKELSIMKIREIIGTD
                     MCGTTVHGIVSGLEKLNFTVKAVRVSLDDLSGDISFPAILQIRNSLGQNHFIVIHKIK
                     KDGNYLVADPAKGLDMLSITELEEVYQGIAIFMVPNSEFEKGNMKGKGLFNLFSALIL
                     TQKGLVGTIILASFLLSIVGILSSLFSKVIMDEIIPFGLKNSLYLFLIVFGIVSLVQS
                     LLSAFRQHILLFLSRKIDIPVLLGYYDHIIHLPYSFFGSRRVGDVLTRFQDAMTIKNV
                     FTSVSISLVMDISLSLISAFVLWHLNPTLFLILVMMVIVNIVLIYCFKKPYKKINNEQ
                     MEANSMLNSQLIESIRNIDTIKSQHDERQRLDKLEENFVHTLEIGYKEGVLQNIQSTI
                     SSIAGTLGNLIFMGVGALFIIDNKMTIGDLLVFQTLSQYFTEPVQNLVGLQLTFQEVQ
                     VAVSRLQELMDVEREDSQVGNSIHNFSLLEDIVFKNVSFAYGSRPPIIRDFSLTIKQG
                     EKIAFVGESGAGKSTLVRLLLHFIQPIEGQIKFGEYDLGDLDYGELRKRIAYIPQTVE
                     LFSGTIIDNLKIGNPEASYEDMIRVCRIVGIHDTIQKLQNRYGSFVEEGGQNFSGGEK
                     QRLAIARALLSKADLYIFDEATSNLDSFSEQIIQNLIFEKIIGKTTIVVAHRLSTILR
                     CDKICFLEDGKIVEYGTHDELMKLGGRYATMVGLQSIQLDKQEKTVATSWSEEVVYE"
     gene            complement(4940..5809)
                     /locus_tag="U1396_000206"
     CDS             complement(4940..5809)
                     /locus_tag="U1396_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341433.1"
                     /translation="MKVLLATRLKNRRKELGWSQKELAEGVCDQGQISRIEKGTYMPG
                     ADLLHALAKKLQVRMDYFFDEEESEIVSDLKHFRKLAKNCLIQRDYEALGFLYEREKG
                     SLFHLTFPDQVYLEWVEAVLAANLEARREDAIQKLRELLERVGENRRGYLYLYNSLLI
                     LLIRDEKNAEAEQFYNEVIEKIDKNKLDLLVDIDAYFSIQSNYTRYLWLTNQLEKGIE
                     LVTACIEEFKSIYPIHFLADFYCDLGNVTEDFADKKLVKERYELSRLLYELAGIDAIA
                     LKIEKYLKETYTD"
     gene            complement(5904..6716)
                     /gene="purR"
                     /locus_tag="U1396_000207"
     CDS             complement(5904..6716)
                     /gene="purR"
                     /locus_tag="U1396_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HEM5341434.1"
                     /translation="MKLRRSERMVVISNYLINHPYELTSLNTFAEKYESAKSSISEDI
                     AIIKKAFEESSIGHIETITGASGGVVFTPSISEAESVEIAQALRDQMAESNRILPGGY
                     IYSSDLLSTPHILKNVGRIIADAFKDEKIDAVMTVATKGVPLANAVANVLNVPFVIVR
                     RDLKITEGSTVSVNYVSGSSDRIEKMFLSKRSLKAGSRVLIVDDFLKNGGTINGMISL
                     LSEFDSTLVGVAVFAENQKGDRSVANYKSLLAVTDINVKENRVDVELGNIFE"
     gene            complement(6818..7684)
                     /locus_tag="U1396_000208"
     CDS             complement(6818..7684)
                     /locus_tag="U1396_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEM5341435.1"
                     /translation="MAVRIVSRQPLTKGWSTDQKYKVQLEDGRLGLLRIAERPAYEAK
                     RLEFQLVENLFGLGLPVAEPLSFWADDLSVYTLYEWVEGQDMNEVATSLSDSVLYDLG
                     CQSGKFLRTLHALPIDQSQRDWNSFYQVKIDNKLAAYQAASHSYPTGPAMIDFVQANR
                     HLLEGRPIAYHHGDFHTGNFLLGPDGKLKILDFDRYDIGDPWEEFNRLIFTADLSPAF
                     ARGQVDAYFDGAIPEEFWKLMALYVTVNCLAALSWAEQVDSEQIPMMKLQAQKISEWY
                     EYFNHHLPKWYM"
     gene            complement(7684..8625)
                     /locus_tag="U1396_000209"
     CDS             complement(7684..8625)
                     /locus_tag="U1396_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM family protein"
                     /protein_id="HEM5341436.1"
                     /translation="MKINQMKKDEFFEGFYLIKTADVRQTRAGKDYLALTFQDDTGEI
                     EGKVWDAQPGKIKDFTAGTVVHMQGRREVYNNTPQVNQLVLRLPKAGEPNDPADFKEK
                     PPVDVKDTKDYLSQMIFRIENATWQRIVRALYSKYDKEFYSYPAAKTNHHAFYSGLSF
                     HTATMVRLADKIGDIYPQLNKSLLFAGIMLHDLAKVIELTGPDNTGYTVRGNLIGHIS
                     LIDEEITKVLMELGIDDSLEEVTVLRHVILSHHGLLEYGSPVRPQIMEAEILHMIDNI
                     DAEMMMMLSALDKVGPGEMTNRIFAMDNRAFYKPNID"
     gene            complement(8615..9853)
                     /gene="rmuC"
                     /locus_tag="U1396_000210"
     CDS             complement(8615..9853)
                     /gene="rmuC"
                     /locus_tag="U1396_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEM5341437.1"
                     /translation="MDIVLLILLILVLLALVFLYGKWQSLALLLQDQAEDTADNLSDQ
                     LSYQLENATLKQQQAIHQEVERLRTELYQQLTDIRQELNKSHLETRDATDRRLQAIQE
                     SNEKRLEEMRQTVEEKLEKTLQTRLQASFETVSKQLESVNRGLGEMQTVARDVGSLNK
                     VLSGTKTRGIMGELQLGQIIEDILTPSQYEREFATVSGSSERVEYAVKLPGRTEGDYI
                     YLPIDSKFPLADYYRLEDAYESGDRDQIDLHRKNLLAAIKRFAKDIQSKYLNPPETTN
                     FGVLFLPTEGLYSEVVRNPIFFDELRRQENIVVAGPTTLSALLNSLSVGFKTLNIQRS
                     ADDISKVLGNVKLEFGKFSDLLLKAQKQLNQASSNIDKLLTTRTNAIERSLRTIDLYE
                     DDQTKGLLGLSPLDEEDNEN"
     gene            complement(9854..10486)
                     /locus_tag="U1396_000211"
     CDS             complement(9854..10486)
                     /locus_tag="U1396_000211"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HEM5341438.1"
                     /translation="MIKIALIAGGSFDCLPEPADLYVGVDAGSLRLLEHSLPLDWAIG
                     DFDSVTSEELGRIKDQAERFLQAPAEKDDTDLELALKEIFKAYPQAQVRIYAALGGRM
                     DHMMANLFLPAEPDLAVYMEQIELMDCQNIIRFRPAGSHRISSIAGMKYISFMPSDQS
                     RLTIRHAKYSLDASNYFFKKCYASNEFIDRDIVIQLDQGYVVLIYSKDKD"
     gene            complement(10479..11138)
                     /locus_tag="U1396_000212"
     CDS             complement(10479..11138)
                     /locus_tag="U1396_000212"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM5341439.1"
                     /translation="MSHYKIAPSILAADYANFEKELKRLEKTGVEYVHIDVMDGHFVP
                     NISFGADVVAAMRPHSKLVFDCHLMVSNPENHIETFARAGADILTIHAEATVHLQGTL
                     QKIRAAGMKVGVVINPGTPLVTIEPVLNLVDQVLLMTVNPGFGGQAYIPEVAEKIEAL
                     VKLREARGLNFDIEVDGGIDDKTIHSAKNAGANVFVAGSYLFKGDLDANVAKLRAALN
                     D"
     gene            complement(11153..12028)
                     /gene="rsgA"
                     /locus_tag="U1396_000213"
     CDS             complement(11153..12028)
                     /gene="rsgA"
                     /locus_tag="U1396_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM5341440.1"
                     /translation="MQGRIIKALAGFYYVEADGQIYQTRARGNFRKKGQTPYVGDFVD
                     FSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNANLLDRFLVLLEQK
                     DMDPIIYISKMDLVEERAEMDAFKAIYEKIGYPFVYSLEELTPLLQDKVTVFMGQTGV
                     GKSTLLNRIAPELALETGAISDSLGRGRHTTRAVSFYNVFGGKIADTPGFSSLDYEVK
                     EAEALTDCFPEIAEASQNCKFRTCTHTHEPDCAVKEAVASSAISQSRFDNYLQFLSEI
                     QNQRETYAKVSKKFK"
     gene            12153..12234
                     /locus_tag="U1396_000214"
     tRNA            12153..12234
                     /locus_tag="U1396_000214"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12186..12188,aa:Leu,seq:cag)
     gene            complement(12285..13877)
                     /locus_tag="U1396_000215"
     CDS             complement(12285..13877)
                     /locus_tag="U1396_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341441.1"
                     /translation="MKKIIYQLRSVIAIQLVFHILYSLTNVVLPELNKYLFDYIFQMG
                     WTGLVWLLLAYALTIIANSVFQYISQVYEWKVSQVFYVTAKKGLANSLLSQPLAKFSE
                     KNVSAYLSIFDNDLETIEESYLSPLMDIIRSSLSMFIYAVSLFLFVHPLVAVGIILSS
                     ALAVFIPKWISGPLSQRQRAFLQSLESYFQVVTDLFSAKNRVNPETFSSISRVHHRSV
                     EESEQARFRFGQFKTLANVVNGFSMFLVQLTAFGLVGYLLLQKELTVGAAIATFSYVE
                     NFIYPMKYILLDVNSIHSTKETVANLEGYLAGQVLSEQVPSYPNVTALEVREVAYHVG
                     ELAVADFSYRFDKGKKYAIIGPSASGKSTFLRVLAGELALDKGSVSYLENDVLHEMEA
                     ATAFYLSQFEHLYHTDFENNVSVFGTYEKGRDVMLGLLRRLPASLQDTSMTASNPSLL
                     SGGEKNVLCLLRALMSGKEILLLDEPTAHLDPALTKQVLTNLLQLEDKLIITILHESD
                     SAILDMFDVVLEMRDGKLSEKI"
     gene            complement(13912..15489)
                     /locus_tag="U1396_000216"
     CDS             complement(13912..15489)
                     /locus_tag="U1396_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341442.1"
                     /translation="MKKRNFWLTLSCIFAVALLNVGFLYQYRFIIDAIAVGDRQAFVS
                     YFVLMVLSVLVMLVFEYIRQIANVSYLNQVGFQLQATFIGKIFDLPFRQFVEQGAGAY
                     ISQLNNDLETVKEDYYDAFFTIFQGACTFGIASLALLSLDGLTAIFLILISFLPVVIP
                     YLFKKRRRLNQEAISDSQQVYNTRVSDTFLSYLQVKNSRQRQQVLDGLNDRYQAVNDK
                     VNQANRTTVTMRLLVGFVFYLTTLSIIFIGGFQVLSGALTIGGLTAILTISEQLVDPI
                     NSIAAAFLDRHAVKELKQEFELSTLGQETKGQELASAFQSIQLVKASYAIGEKQVFED
                     LTVAFERGKKYLILGESGSGKSSLALILTKNSQLQAGDIYVDKTSLSDLSYQAIQDKI
                     AYLPQEGALFHDTVLYNLTMGREVPDDRLMFLIKTMNLDSRFPSYASLSEEISDDSGL
                     SGGQKQRLLLIRALLQDKDILLLDESLSALDQETYAVIENYLTSLADKTLIHISHRVS
                     DDVLSRYDGVVPIGESN"
     gene            complement(15593..16459)
                     /locus_tag="U1396_000217"
     CDS             complement(15593..16459)
                     /locus_tag="U1396_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5341443.1"
                     /translation="MNRFGRTLKLIREGKGKSLAEVAKGHISTSQLSRFENGESDITV
                     SKLFGVLAEMNVDVDEFVYASQDFKKDELTRILEQLKQSIYIRDVVTIKKILSEQLAK
                     AERDSRREFHRLNAILIAYKLSDLDKTVVVSKEDTAFLTDYLFQVDNWSYYELLLFAN
                     TMDELEHQTMMLFCRELIGRTQFYREMKLHRLAISQILLSAYLVSVQHKELADAIFLE
                     KTIKGLFFDETEIFERILFKFGKAFYDYRKTGSANAILEMRKCIRLLRAVDSQNIADW
                     YETILEKIVNEK"
     gene            complement(16586..19030)
                     /locus_tag="U1396_000218"
     CDS             complement(16586..19030)
                     /locus_tag="U1396_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEM5341444.1"
                     /translation="MKQINPKASKQFILVMIITVLLAMGRALLLSGVSFPLWFIPLPL
                     LAYSIFTFYVLVLLDTYEKFVKTKTFAKYVGYFLGFLYLVNLVYRLNAKKYQPWNIFR
                     NNLFQFELLLMLLLPVLLAFLWRKKTGIREKLSQWSANHLVPDGYLLLTSLLSLSPLA
                     ISYWKDSHYESLVEKGSYIEFFSQTPLFAPIHFIGTYIFLRYLHKAFVEFKANRTNVH
                     SMLFISLALATLSHIGYQASMAGATGSYFTRHLFPGAIVFQIACLFFLNVIISLVINL
                     QILSVAVIASLNVILVTANFLKFRYRSEPLTPNDFKWVGNLGMILSFISLRVVLVSLV
                     FIVLLVFIYRRIHKKYFQGRIVASIWKRLAGISVIVSLILGMGWAIRNEKDHKIAGWI
                     PILSQVNNWRNVDWKGYAFVARYRTLSFLWLQQLSKTSMEMPENYSEKTMKAIVNKYT
                     ALAEEINAERTGQLTDQTVIYILSESLADPRRIPGVTLSQNVLPNIEYIMSQTTSGLM
                     KSDHYGGGTANIEFQVYSGLPFYNYSSSISSVYLDVAPNMKKLPSISDLYPADNRIAI
                     HPYYDTSYNRNSIYKQLGIEQFYTLNSAKYPLTVTAEDYQGNFVSDKKTYDLILDQVR
                     SADTSFVSAITMQNHVQWNSLEPAGITASGEGFTAEENENLTSYVRLLSFTDQATRDF
                     LDQLKTLDKKVTVVFYGDHLPGLYPESAFVTDPSAQYKTDYFVWSNFETEDYHYDLVN
                     SSDMNALMLETTNNKVSPYYALLTEVLHKDRVGQAERDAKVAEELKLVQYDLSTGKGY
                     LLKYKDFFKVATETTE"
     gene            complement(19043..20773)
                     /locus_tag="U1396_000219"
     CDS             complement(19043..20773)
                     /locus_tag="U1396_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341445.1"
                     /translation="MLKTMLKKHPHLVALGLFVGFSLLLLVPHLLTKGMVTGADLIFH
                     YNRFYDAAMQMKEGNFSYIISLYGYQQSGRIVNALYGPYFAYLQGALVLLSGTWFRYQ
                     ILTNLLLGTLSATSLYLLMREVKVKYAHSILLSLFFVTTYSIQYWWATQGFTSWGVAL
                     FPLCLIPAVRFLQTKKVPIFLMAGAVGLMLQVHMLSTLFLVIAYGVLFLIGWWKSDQK
                     MKIIGQVALSVGIFLLLTINIWLPLIYINATNTLVPPFVNKKFVLNTVTWLKTAFLYY
                     PYPLPIFFGIYLYFLVKNWKKQSLVLAGLALTYAVFLILSTNLFPWQLFAGKGITLVE
                     LIQFPFRFFLYANVLLLAVVGVQVSGVSDKIQKIFSGLTVISLLVSVGFLWNQSYKEI
                     NGHYYSDTFLQKRIHTTLYGTTEELRASFYSKDLGEFIHIAQKSTPDYVPDLSDSTGH
                     ITNEESDNTYFTYRDQVILPNQEFIKEVDGDQLVVTWTASEAEETALPIIVYQDSQLV
                     LNDQVLDREEMELSTIGVPTVTSKKGQNTLVLSYKQQWWLLPVIFISLTGWLVWLIYY
                     IFAYRKSNLS"
     gene            complement(20976..21884)
                     /gene="rsmA"
                     /locus_tag="U1396_000220"
     CDS             complement(20976..21884)
                     /gene="rsmA"
                     /locus_tag="U1396_000220"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEM5341446.1"
                     /translation="MKWRNKKQERTHMRIADKNVTRAVLERHGFTFKKSFGQNFLTDT
                     NILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLGR
                     FDNVTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLPYYITTPILMHLIESKIPFSEF
                     VVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM
                     VRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNHFGKSEEVKDKLTQALGMAEL
                     EASVRGEALSMADFARLSDSLQEVGL"
     gene            complement(21868..22398)
                     /locus_tag="U1396_000221"
     CDS             complement(21868..22398)
                     /locus_tag="U1396_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEM5341447.1"
                     /translation="MKKVVLLRGVTPVGKNKIPKMSHLAEILTEVGLTSVQTYIQSGN
                     VVCETDILDEELSRLIHQTIKEKIGAELAIIVKHQMELTQAVAENSFGEGYDPFRVHL
                     VFTNDEINGEKLNKLLHQDFGDEELRLGSQCLYMYLPRDARKKKLNTNYLEKQLDITA
                     TMRKLSVISRLSEMAK"
     gene            complement(22412..22669)
                     /locus_tag="U1396_000222"
     CDS             complement(22412..22669)
                     /locus_tag="U1396_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HEM5341448.1"
                     /translation="MGIHFTEDAWEDYLYWQGQDKKTLKRINKIIKDMQRHPFEGIAK
                     PEPLKYDYQGAWSRRIDAENRLIYMVEVDKLYILSLKDHYG"
     gene            complement(22671..22931)
                     /locus_tag="U1396_000223"
     CDS             complement(22671..22931)
                     /locus_tag="U1396_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEM5341449.1"
                     /translation="MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKS
                     EWDSLQETLAVARNTYLSQKVLRGMAKVKTGQTQERNLIEAD"
     gene            complement(23007..23462)
                     /locus_tag="U1396_000224"
     CDS             complement(23007..23462)
                     /locus_tag="U1396_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5341450.1"
                     /translation="MSRREQVVLTNMCMITDGQRVLVQDRKSEKWPGVTFPGGHVEPN
                     ESIISSVIREVKEETGLTVSNLELCGIQNWTDPTDHYRYLVFCYKTSHFSGSIQSSDE
                     GEVFWINRADLKNVQLADGFEPMLEIFEQPQLTENFCWFEDGEWKVENR"
     gene            complement(23466..23834)
                     /locus_tag="U1396_000225"
     CDS             complement(23466..23834)
                     /locus_tag="U1396_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341451.1"
                     /translation="MDRVYAVKCLVKNEFEPSYENYSSYEEVTYLLPADVLVWEDEQV
                     DKNKLADYLRGLVEDGYVNADGIWKQSRLFHIAGVQEMDDRVEFDGLAVEVYRWFYNF
                     EHPVTEEEFLNLYYFDDLGR"
     gene            complement(23827..24417)
                     /gene="rnmV"
                     /locus_tag="U1396_000226"
     CDS             complement(23827..24417)
                     /gene="rnmV"
                     /locus_tag="U1396_000226"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HEM5341452.1"
                     /translation="MQGACSELTQKIKIQEVLVVEGKDDTANLKRFYEVDTYETRGSA
                     ISDDDLERIEKLHDLRGVIVFTDPDYNGERIRKMIMQAIPTVKHAFLQRDEATPKSKT
                     KGRSLGIEHASFADLEKALAGVRGYYDDEHNFDITKSDLMRLGLLMGGDSRKRREYLG
                     EKLRIGYCNGKQLLKRLELFGISLAEVEEAMGSYHG"
     gene            complement(24380..25162)
                     /locus_tag="U1396_000227"
     CDS             complement(24380..25162)
                     /locus_tag="U1396_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM5341453.1"
                     /translation="MIQIFDTHTHLNVEQFDGRVQEELDFAKEMGVTLHNVVGFDRAT
                     IDKAMELADQHPEIYLTLGWHPTEAGTYDEEVENYLLKALQHPKVIALGEIGLDYYWM
                     TADKEIQARVFKRQMELAKQLDLPFVVHTRDALEDTYQIIKEVGVGPRGGIMHSFSGT
                     LEEAQAFMDLGMHISFSGVVTFKKAVELQEAAQALPLEKILVETDAPYLAPVPKRGRE
                     NRTGYTRYVVDMLAQLRNQSVEEVARATYENARSLFRIDSEN"
     gene            complement(25270..25407)
                     /gene="rpmH"
                     /locus_tag="U1396_000228"
     CDS             complement(25270..25407)
                     /gene="rpmH"
                     /locus_tag="U1396_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEM5341454.1"
                     /translation="MKRTFQPSKIRRARKHGFRSRMATKNSRRVLAARRRKGRKVLTV
                     A"
     gene            complement(25575..26570)
                     /locus_tag="U1396_000229"
     CDS             complement(25575..26570)
                     /locus_tag="U1396_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HEM5341455.1"
                     /translation="MKFTGASVEEAIQNGLVELNIPRKKAHITVVAREKKGFLGFGKK
                     PAIVDIDVINETTVVKANQKAVRGVPSEINDLNEPVKSVSEATIDLGKVVAAVKEFEK
                     SGQTLDDDIKAQILKNEKEATTILEETGRIEILSEDLLTTTDATTSAKEDVNQEVVSE
                     NQADNFADLDIKIEPQYDIEQVVSEVTAYVQEILDDMDVEARIDTSHNRRTINIQVDT
                     NEPGRVIGYHGKVLKALQLLAQNFLYNRYERNFYITINVNDYVEHRAEVLQGYAQKLA
                     ERVLAEQEAYHTDPMSSSERKIIHRIISKMDGLTSYSEGSEPNRYVVVDIEGNHD"
     gene            complement(26590..27402)
                     /locus_tag="U1396_000230"
     CDS             complement(26590..27402)
                     /locus_tag="U1396_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM5341456.1"
                     /translation="MKKKVKWAGLLVASLIVLTACGTGPVTSQSTDAWDRLIYWFASI
                     IQFLSINGQIGIGIILFTILIRTLLLPLFQIQMNSSRKMQELQPQLKKLQAEYPGTDM
                     ESRQQLYEATQALYKENGVSMRASMIPLFIQMPILLALFQALTRVEALKVGHFLWLNL
                     GEPDPFFILPIMAAVFTFLSSWLTNKSAIEKNMAMTIMTYVMPVMIFFFAVAAASGVA
                     LYWTVSNAYQVAQTLVFNNPFKIIAERQAKIDAEKERQAKIRRAQKKAQKKK"
     gene            complement(27386..27745)
                     /gene="rnpA"
                     /locus_tag="U1396_000231"
     CDS             complement(27386..27745)
                     /gene="rnpA"
                     /locus_tag="U1396_000231"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEM5341457.1"
                     /translation="MKKSYRVKRERDFNDIFTKGNNVANRRFVVYRLPKEQKHFRVGL
                     SVSKKLGNAVMRNKIKRRIRHILIECQHQLVADDFVIIARKGVEELSYQEMKQNLIHV
                     LKLAKLYQEGVVIEKES"
     gene            complement(27816..29210)
                     /gene="argH"
                     /locus_tag="U1396_000232"
     CDS             complement(27816..29210)
                     /gene="argH"
                     /locus_tag="U1396_000232"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEM5341458.1"
                     /translation="MEAKKLWGGRFEASLEEWVEEFGASIRFDQKLAKYDIQGSLAHV
                     KMLGQTGIVSQAEAQVIQAGLEELLEEYEAGKLVFDIRNEDIHMNIESLLTEKIGSVA
                     GKIHTARSRNDQVATDMHLYLKDTLFQVVDKLTNLRQILVDLAQEHVETIMPGYTHLQ
                     HAQPISFAQHLLAYYNMFSRDSERFAFNMQHTNVSPLGAAALAGTTFPIDRRMTSDLM
                     GFAKPYSNSLDAVSDRDFILEFLSNASILMMHMSRLCEEIINWCSHEYQFVTLSDTFS
                     TGSSIMPQKKNPDMAELIRGKTGRVYGNLVGLLTVMKSLPLTYNKDLQEDKEGMFDTA
                     ETVLISIDILAGMLQSMTVHKERMAQSTEKDFSNATELADYLASKGLPFRQAHEIVGK
                     LVLECSKAGHYLQDVSFETYQAISPLIQADIYDALSSKVAVSRRNSLGGTGFESIADQ
                     LKSAKEEIQNAKSL"
     gene            complement(29224..30417)
                     /locus_tag="U1396_000233"
     CDS             complement(29224..30417)
                     /locus_tag="U1396_000233"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEM5341459.1"
                     /translation="MTKEKLILAYSGGLDTSVAIAWLKKDYDVIAVCMDVGEGKDLDF
                     IHDKALSIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVE
                     MAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWKWAREEEIIFAKEN
                     GVPVPADLDSPYSVDQNLWGRANECGVLENPWNEAPEDAFGITTSPENAPDTPEYVDI
                     EFKAGIPVAVNGEKLSLANLIQRLNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI
                     TLLTAHKEIEDLTLVREVSHFKPIVSNELSNLIYNGLWFNPATDALKAYLAQTQAVVN
                     GTAKVKLYKGSAKVVARKSPNSLYDEDLATYTSADTFDQDAAVGFIKLWGLPTKVNAE
                     IHKKS"
BASE COUNT         8788 a         7046 c         5866 g         8735 t
ORIGIN      
        1 aatttgtgct aatgtaacaa taagtgcaac ccccgataac tgattaaact cattttgcga
       61 aaaatatatt gtaccgcata acaaaagaac aatactgcct tctatgaata agaacaaagg
      121 taaatatttc ataaatgatt acttcccagt tacttttgca tagaaagcat ttttaaatcc
      181 ggtcataaaa atacctcccc aaacatttcc aacaactagt gccgccgccc gaacttgcca
      241 tttgattttt tgatattgcg aatttcttaa ccctgcatag tatactctag tacctgcagc
      301 taagccagct ccataagctg ctccacccgc agctacggca gctgatatta tccctaatac
      361 agtagctgtg gctatttcac ccccatcaag gtacatcatt tcttcttctt caagaactac
      421 ataattattc ggcattacta attccataaa aattctcctt taaaaaatca tagttagaca
      481 caatcctcta actggatata atcaacgttt ctcattcttt acctagatag cagaaggacc
      541 tttcatccat actgtttgga tttatctact gtaaagatat aaaaccacta ttgtttaaaa
      601 ctcaacaatt ctagaatcca atccaaatag gtttcattat cataaacgat acgagcctcc
      661 actggcatat ctttttgtaa aactacaatt tcttcatctt tttttagagt caattcttca
      721 agagcaacaa ctactttgta aaaactaaca ttaccattct gagtttcctg agtaatcgtt
      781 ccagagtcaa tctgagttac agcacccttt aaggtaccaa atttctgact gtttacacct
      841 gtgatagcta tatctacctc tgcaccgact gttacacggg aaatatctgt cgcaagaaca
      901 aaggcttcta cataggcttc tctatcacta ccagcaattt cagcgacagt ctgattttgt
      961 tggacagaca tgccttgctt gagcggagta acataatgta gagttccgtc actggaggca
     1021 gaaacagtta gccctctatc ctgacctgtg gcaatcccta aattagcttc taactctgtt
     1081 atgcttttat tattggccgc ccttgctgtt cctaactcac tgattaactg ggcataagtg
     1141 ttgtaagctt gagaagtagg atcattgtaa gaacgctcca tctccctaat actagactgt
     1201 agggactcta tttccgtccc ctttccttgt atagaagaag tagtcgtttc aatttttatt
     1261 ttgacctctg atatttttgt atttagctgc tccaactgaa tgctattaga agaagtgtca
     1321 acggatgatg aactggtctc actatcggaa ttcgtttctg ctgtctcttg aacagaaaga
     1381 gttgccaatt ctgcctctaa attagcaagt tgcgattggt aactagacaa gtccgtttct
     1441 aattgacttt tctccgccac taatttattc aacttagtgt actcttcctg caacttagca
     1501 tattgactac catcattata gttttctgag ctaagttgag atagataata ttctaccttc
     1561 ccgtaatact cctgctcttc acctgaattt gccatataat taactttttc attcagagac
     1621 tgttcatact tttgaaagag actctcttta gctttgagct tgtccaattg tttagttaaa
     1681 gattcagtct gaagtccttc ttgtccacta gatagagaaa gaataacctc accagctttt
     1741 acactatccc cttccttttt atgaagtgtc acaatcttcc cattgctcag agcagataca
     1801 tactctgttc ctgttatcac ggaagtcccc ctagctttga ctatgtaatt tttaggcaaa
     1861 taggcagata ctgcaaaagc tataatcaaa gtagctagtg tactaaagat taggataaac
     1921 gcgtaggctg gaggacgctt atcgaagaag attctagaat aacgaagttc agatttgtta
     1981 tatagtttca taagctaata atcggtctaa aaatatccac cgtcatggtt tcattatttg
     2041 tattgacata gacggtgtaa ataatgccat ctgtttccaa atcattttca tagaaatgta
     2101 aatctagttt agaatatgca tattgcaaat actctggact atcttcaaat cgtacataga
     2161 cacaatgtgg acaaacaatt tcttcataaa cagtataaaa cttatcatac tggcgaaaat
     2221 catgagcttg gacatacaaa tcatagtcta cagtaatagt cccatcttca tgaagaatag
     2281 ttccactatt ttttacaatc aaagggccaa acatttgcac tttcagtaat tgtaagtgct
     2341 gataaaactt atctatttct tgttccaagt cttcaaactg aaggctactt agcttcttac
     2401 aaatcacttt tttcaaaact aattttttgt tttctaatac ttctaactta ctcatatact
     2461 acctcttctg accagctagt agcaactgtt ttttcttgct tatctagttg gatgctttgt
     2521 aagccaacca ttgttgcata gcggccaccc aacttcatca attcatcatg cgtcccatat
     2581 tctacaattt tcccgtcttc caaaaaacag attttatcac aacgtagaat cgttgataat
     2641 ctgtgggcca ctacaatagt cgtcttgcca ataatttttt caaatattaa attttggata
     2701 atctgttcac taaaggaatc tagattggaa gttgcttcat caaaaatata aagatctgct
     2761 ttactaagaa gagctcgggc aatagcaaga cgttgttttt ctcctcctga gaaattctga
     2821 ccaccttctt caacaaaaga accatatcgg ttttgtaatt tttgaatcgt gtcatgaatc
     2881 cctactatgc ggcatacacg tatcatatcc tcatagctag cttctggatt tcctatcttt
     2941 aaattatcaa ttatagtccc tgaaaagagc tcgactgttt gagggatata agctattctt
     3001 ttccgtaatt ctccataatc taaatcccct aagtcatact caccaaactt tatttgacct
     3061 tcaataggct gaatgaaatg aagaagaagt cgtacaagag tactctttcc cgcgccactt
     3121 tcacctacaa aagctatttt ttcaccttgt ttgattgtca aactaaaatc tcgaataata
     3181 ggcggtctag atccataagc gaaagaaacg tttttgaaga caatatcttc caataacgaa
     3241 aaattatgga tactattccc tacttgacta tcttcacgct caacatccat caattcttga
     3301 agtctgctaa cagcaacctg aacttcctgg aaagtaagtt ggagaccaac caaattctga
     3361 acaggctcag taaaatactg actcaaggtc tgaaaaacaa gaagatcacc aattgtcatc
     3421 ttgttatcaa taataaataa ggcacccact cccataaaaa tcaaattccc tagagttcca
     3481 gctatagaag aaatcgtaga ttgaatattt tgtaaaacac cttctttata gccaatttct
     3541 aaggtgtgaa caaaattctc ttctagttta tccaaacgtt gtcgttcatc atgctgtgat
     3601 tttatggtat ctatgttacg aatagattct atcaattgcg aattaagcat agagtttgct
     3661 tccatctgct cattattaat cttcttataa ggtttcttga agcaataaat taacacgata
     3721 ttcacaatca ccatcataac caatattaga aataaagtgg gattgaggtg ccataaaaca
     3781 aaggcactta tcagtgatag gctaatatcc ataactaacg aaatagaaac cgaggtaaaa
     3841 acattcttta tcgtcatggc atcttgaaac cgtgtcaaga catcacccac ccttctgcta
     3901 ccgaaaaaac tataaggtag gtgaataata tggtcataat agcccaggag cacaggaata
     3961 tcaatttttc ttgataggaa gagcaaaata tgttgcctaa aagcagataa gagactctgc
     4021 actaaagaaa cgatgccaaa aacaatcaag aataagtata agctgttctt taatccaaag
     4081 ggaataatct catccataat aacttttgaa aagagactag acaaaatacc aacgatactt
     4141 agcaagaatg atgctaagat gattgtcccc acaagtcctt tctgtgttaa tatcagagct
     4201 gaaaataagt taaatagtcc tttgcctttc atgtttcctt tttcaaactc gctatttgga
     4261 accatgaaaa tggctattcc ttgataaact tcctcaagtt ctgtaattga aagcatatcc
     4321 agtccttttg ctggatcagc taccaaataa ttaccatctt tctttatctt atgaatcact
     4381 ataaaatgat tctgccccag actattccgt atttgtagta tagctggaaa gctaatatct
     4441 ccacttaagt catccaagga tactcgaact gcctttacgg taaaatttaa cttttcaaga
     4501 ccagaaacaa ttccgtgaac ggtcgttcca cacatatctg ttccaataat ttcccgaatt
     4561 ttcattattg aaagttcttt tttataggtc aataatacag tggagacaac agctgctgca
     4621 caatctgact ggtcatgttg caaagtgcaa gcatattttt taaacatata tactccgccc
     4681 taactatttt gtatagataa atatttcttc tctatctaca ccaaaaactc tcggcaattg
     4741 tggaactcta attaaaataa ccgctagtaa tcccaccacc aaaacactct taactattct
     4801 tttcattttg taaccccttt cttttctaca gtataaccgt ttcgttaccc attgtcaatg
     4861 ttttttgata ttttttctaa taaaatttat tattgttata tttttgatat aaaaagaagc
     4921 ctgcccctct agagcaagct caatctgtat aggtttcttt gaggtatttt tctattttca
     4981 aagcaatagc atcaatacct gctaactcgt aaagaaggcg tgatagttca tagcgttctt
     5041 tgaccaattt cttatccgca aagtcttctg tcacatttcc taagtcacaa taaaaatctg
     5101 ccaagaaatg aataggatag attgacttga attcctcaat gcaggctgta accagctcaa
     5161 ttcccttttc caactgattt gtcaaccata ggtagcgggt gtagttagac tgaatactga
     5221 agtaagcatc tatatctacc aataaatcca acttattttt atcaatcttt tcgattacct
     5281 cattatagaa ttgctctgcc tcagcattct tctcatctcg aatcaataga atcaataaac
     5341 tattgtagag atagaggtag cctctcctat tctccccgac tcgttccagc aactccctca
     5401 atttctgaat agcatcttct cgccttgctt ccaaattcgc tgctaaaaca gcctccaccc
     5461 attccaaata tacttggtct ggaaaggtca gatgaaatag ggagcctttt tccctctcat
     5521 acagaaatcc caaagcctca taatctcttt ggataagaca gtttttggca agttttctaa
     5581 agtgtttcag gtcagagaca atttcgcttt cctcttcatc aaaaaaatag tccattctga
     5641 cttggagttt tttagcaagg gcatgaagta agtctgcacc aggcatgtag gttcccttct
     5701 caatgcggct aatctgccct tgatcacaga ctccttccgc caactccttc tgcgaccagc
     5761 ccaattcttt tcttctattt tttaaccttg ttgctagtaa aactttcata tcaacctctc
     5821 agaatccaat ctatatttat tataacaggt taagacctag cagacaaaca ccaaaaaacc
     5881 tctcatcaag agaggcttag aggttactca aaaatatttc ccaactcaac atccacgcga
     5941 ttttccttga cattgatgtc ggtcacagcg agcagagact tgtagttagc tacgctacgg
     6001 tccccttttt ggttttctgc aaagacagcc acgcctacca aggttgagtc aaactcagac
     6061 aagaggctaa tcataccatt gatggtgcca ccatttttca agaagtcatc gacgattaag
     6121 acacggcttc ctgccttcaa actacgctta gacaggaaca tcttttcgat acggtcgcta
     6181 gatcctgaca catagttgac agaaacggtt gaaccttctg tgattttcaa atcacgacgc
     6241 acaatcacaa acggtacatt aaggacattg gcaacagcat tggccaaagg gaccccctta
     6301 gtcgcaactg tcatgaccgc atcaatcttc tcatctttga aagcatctgc aatgatacga
     6361 ccgacatttt tcaaaatatg tggtgtagac agcaagtcag atgaatagat ataaccgcct
     6421 ggcaagatac gattactttc ggccatctga tcacgaaggg cctgtgcaat ttcgacagac
     6481 tctgcctcag agattgatgg agtaaaaaca actcctccac tggcaccagt aatggtttca
     6541 atatgcccga tagagctttc ctcaaaagcc tttttaatga tggcaatatc ctctgagata
     6601 gatgacttgg cagattcata cttttccgca aaggtattca aactagttaa ttcataaggg
     6661 tggttgatga ggtaattgga aatgacaacc atacgctcac ttcttcttaa tttcataaaa
     6721 tcatcctctt tcactttttt atattatatc acaacaaact acaaaaagcg aacttttttg
     6781 attaaaaagt ccgtcttttt cgtattttgt ttatcgctta catataccac tttggaagat
     6841 gatgattaaa atattcatac cattcagaaa tcttctgcgc ttgcaacttc atcattggaa
     6901 tttgttcgga atctacttgt tctgcccaag aaagagcggc tagacaattt actgttacat
     6961 aaagagccat gagtttccaa aattcctctg gaatagcgcc gtcaaaatag gcatctacct
     7021 gaccacgcgc aaaggctgga gacaaatctg ccgtgaaaat caaacggttg aattcttccc
     7081 aggggtctcc tatgtcgtag cgatcaaagt ctaatatttt cagtttccca tccggaccca
     7141 gtaggaagtt acctgtgtga aaatctccat gatggtaagc aatcggtctc ccttcaagca
     7201 agtgacgatt ggcctgaaca aagtctatca tagctggacc agttgggtag gaatgactag
     7261 ctgcttggta ggcagctaat ttattgtcaa tcttaacctg ataaaaactg ttccagtccc
     7321 gttgactttg gtcaattggt agggcatgca aggttcgcaa aaacttccct gactgacagc
     7381 ccaaatcata taagacagaa tcagacaagc tagtagccac ttcattcata tcctgacctt
     7441 ctacccattc ataaagggtg tagactgaca agtcatccgc ccaaaaactt agtggctctg
     7501 ccacaggcaa acctagacca aacaggtttt caactaactg aaactctaat cgcttagcct
     7561 cataggctgg tcgctctgct attctcaaca gaccaaggcg accatcttct agctggacct
     7621 tatacttttg gtccgtggac cagcctttgg tgaggggctg tcgagacact atcctaactg
     7681 ccatcagtcg atgttgggct tatagaaggc gcggttatcc atggcaaaga tgcggttggt
     7741 catctcgcct gggccgacct tgtccaaggc cgatagcatc atcatcattt ccgcatcgat
     7801 gttgtcaatc atgtggagga tttctgcctc cataatctgc ggacggacag gactgccata
     7861 ctccaagagg ccatggtggc tgaggataac gtggcgcaga acagtcactt cctccagact
     7921 gtcatcgatg cccaattcca tcaagacctt ggtaatctct tcatcaatca aggaaatgtg
     7981 accaatcaga ttgccacgga cagtgtagcc tgtgttatca ggacctgtca gttcaatcac
     8041 cttggctagg tcatgaagca tgattcctgc aaagagcagg ctcttgttga gctggggata
     8101 gatgtcacca attttatctg ccaagcgtac catggtcgct gtatggaagg acaagcctga
     8161 gtagaaggca tggtgattgg tcttggctgc tggataggaa tagaattcct tgtcgtactt
     8221 gctgtaaaga gcacggacaa tccgctgcca agtggcattt tcaatgcgga aaatcatctg
     8281 gctcaaatag tccttggtgt ccttgacatc cacaggtggt ttttccttga aatcagcagg
     8341 gtcgttgggc tcgcctgcct ttggcaaacg aagaaccagt tgattgacct ggggggtgtt
     8401 gttgtaaacc tcacggcgac cctgcatgtg aacaacagtt ccagcagtaa agtctttgat
     8461 tttccctggt tgggcatccc agaccttgcc ttcaatctcg cccgtatcat cttggaaggt
     8521 cagagctagg tagtctttgc cagctcgtgt ttgacggaca tctgcggtct tgatgagata
     8581 gaatccttcg aagaattcat cttttttcat ttggttaatt ttcattatct tcctcatcta
     8641 atggggacag gccaagcagt cccttggttt ggtcatcttc gtacaggtca atggtacgaa
     8701 gactacgctc gatggcgttg gtgcgagtgg ttaggagttt gtcaatattg ctgctggctt
     8761 gattgagttg tttctgagcc ttaagcaaga ggtcagaaaa cttgccaaat tccagcttga
     8821 cattgcccaa gaccttggaa atatcatcgg ctgaccgttg aatattgagg gtcttaaagc
     8881 cgacggagag ggaattgagc agggcagaca gtgtggtcgg tcctgctacc acgatatttt
     8941 cctgacggcg aagctcatca aagaaaatgg gattgcggac cacctctgaa tacagccctt
     9001 cggttggcaa aaacaacacg ccaaaattag tggtttcagg cggattgagg tacttgctct
     9061 gaatatcctt ggcaaaacgt ttaatagccg ccaagagatt tttgcgatgg aggtcaatct
     9121 ggtccctgtc cccactttcg taagcatctt ccaagcggta gtaatccgcc agcggaaact
     9181 tggaatcgat tggcaagtag atatagtcgc cttccgtccg tcctggtagt ttgaccgcat
     9241 actccacacg ctcactagag cctgaaactg tggcaaactc tcgctcatat tggctaggtg
     9301 tcaaaatatc ctcgataatc tgtcccagct gtaattcacc catgatgcca cgggttttgg
     9361 tgccagacag gaccttgtta agactgccca catcacgcgc caccgtctgc atttcaccca
     9421 gaccacgatt gaccgattcc aactgcttgg acaccgtttc aaaggaggct tgtaggcggg
     9481 tttgcagggt tttctccagc ttttcctcaa ccgtctgccg catttcttcc aggcgttttt
     9541 cattggactc ctgaatggcc tgcaaacggc ggtcggtggc atctcgcgtt tccaagtggc
     9601 tcttattcag ctcttgacgg atgtcggtta gctgttggta aagctccgtg cggagtcttt
     9661 ccacctcctg atgaatggct tgctgctgtt tgagggtagc attttccagt tgatagctga
     9721 gctgatcaga caaattgtct gctgtatctt cggcttgatc ttgcaaaagc agggccaagc
     9781 tctgccattt tccataaaga aaaaccaagg caagcaagac cagtatcagc aaaataagta
     9841 atacaatatc catctaatcc ttgtccttac tgtagatcag gaccacgtag ccctgatcca
     9901 gttgaataac tatgtctcta tctataaatt cgttagaggc atagcatttt ttgaaaaaat
     9961 aattgctggc atccaacgag tacttggcat gacgaatggt caggcgactc tggtccgacg
    10021 gcataaagga aatgtacttc ataccagcaa tcgacgaaat cctatgactg cctgcaggtc
    10081 gaaaacgaat gatgttttga caatccatca gttcaatctg ctccatatag accgccaagt
    10141 ctggctcagc tggcaaaaag agattggcca tcatgtgatc catgcgtcca cccaaagcag
    10201 catatatgcg aacctgggcc tgcggatacg ccttgaagat ttcctttaaa gccagctcca
    10261 aatctgtatc atctttttca gcaggagctt gcaaaaaacg ctctgcttga tcctttatcc
    10321 gccccaactc ctccgaggtc accgagtcaa aatcaccgat agcccagtca agaggtaagg
    10381 aatgttccaa tagacgaagt gagcctgcat ctacccctac atagaggtct gcaggctcag
    10441 gaaggcagtc aaatgaacca cctgctatta gggcaatctt aatcattgag ggcagctctc
    10501 aatttggcaa cgttggcatc caaatcgcct ttgaagaggt aggaacctgc cacaaagaca
    10561 ttggcacccg catttttggc tgaatgaatg gtcttatcgt caatcccgcc gtccacttcg
    10621 atgtcaaagt tcaagcctct ggcttcacgt agtttgacca aggcctcaat cttctcagcc
    10681 acttctggaa tgtaggcttg tccaccaaaa cctgggttga ccgtcatgag aagcacctga
    10741 tccaccaagt tgagcacagg ctcaatggtc acaagaggtg tacctggatt gatgaccacg
    10801 cccaccttca taccagcagc gcggattttc tgcaaggttc cctgcaggtg aacggttgct
    10861 tctgcatgaa tggttaaaat atctgcaccc gcacgtgcaa aggtctcaat atgattttca
    10921 ggattggaca ccatgagatg gcaatcaaaa accagcttgc tatgaggacg catagccgca
    10981 accacatccg ccccaaagct aatatttggc acgaaatgac cgtccatgac atcaatgtgc
    11041 acatactcca cacctgtctt ttctagacgt ttgagctctt tttcaaaatt tgcataatct
    11101 gccgccaaaa tagacggtgc aatcttataa tgtgacatag agaaccaact ttctatttga
    11161 atttcttact aaccttggca taggtttcac gctgattttg gatttcgctg aggaattgga
    11221 gataattgtc aaagcgactt tgggaaatag cagagctggc aacagcttct ttgactgcac
    11281 aatccggctc atgggtgtgg gtacaggtcc taaatttgca gttctggctg gcttccgcaa
    11341 tctctgggaa acaatctgtc agtgcctcag cctccttgac ttcatagtct agcgatgaaa
    11401 aacctggcgt atccgcaatt ttcccaccga agacattgta gaaactgacc gcacgagtgg
    11461 tatggcgacc acgccccaga ctatctgaaa tcgcccctgt ttccaaggct aattctggcg
    11521 caatgcgatt gagaagtgtc gatttgccaa cccctgtctg ccccataaag accgtcacct
    11581 tatcctgcaa taatggcgtc aattcctcca aactatagac aaaaggatag ccaattttct
    11641 catagattgc cttgaaggca tccatctccg cccgttcttc taccaagtcc atcttagaga
    11701 tatagataat gggatccatg tccttctgtt ccaaaagaac aaggaaacgg tctagtaaat
    11761 tggcgttaaa atcaggttcc ttggccgaca tgataaccac cgcctgatcg atattgacga
    11821 taggagggcg aaccaaacta tttttccgct catgaatctt taatatatag ccttctgagt
    11881 tttcctccgc agaaaagtcc acaaaatcac ccacgtaggg cgtttggcct ttcttacgaa
    11941 aatttcctct ggctctggtt tgataaatct gtccatccgc ctcgacatag taaaaaccag
    12001 ccaaggcctt gataattctt ccttgcaatg aagactcctt cgtgtgtact tgttcctatt
    12061 ataccaaatt tcctacaaaa aaaccgcaag cggtttcgat tttacatttt cctctagtca
    12121 tttcaatgta aaaatagtat aataaaaagc aagcggaggt ggtggaacgg cagacacgca
    12181 tgcttcaggc gcatgtgccc atcgggtgtg agggttcaaa tcccttcctc cgcattattt
    12241 ataaaggata accccaagtc aaaattgatg acttgggggc atttttatat cttctcactc
    12301 agtttcccat cacgcatctc caaaaccaca tcaaacatgt ctaggatggc agagtctgat
    12361 tcatgcaaga tggtgatgat aagtttgtcc tccagctgca agaggttggt caaaacctgc
    12421 ttagtcaggg cagggtctaa atgggcggtc ggttcatcca agagcaatat ctccttacca
    12481 ctcatcaagg cacggagcag gcacaggaca tttttctcgc ctccacttaa gagactagga
    12541 ttacttgcgg tcatcgatgt gtcctgtaaa ctcgctggca atctccttaa caagccaagc
    12601 atgacatctc ttcccttctc ataggttcca aaaacagaca cattgttttc aaaatcggta
    12661 tggtaaagat gctcaaactg gctgagatag aaggcggtag ctgcttccat ttcatgcaaa
    12721 acatcgtttt ccagatagga aacacttccc ttgtccagag ccagttctcc tgccaacact
    12781 cgtaaaaaag tggattttcc gctggctgac ggaccaatga tggcatactt tttccccttg
    12841 tcaaaccgat aggaaaaatc tgctaccgct aattctccca catgataggc cacttccctg
    12901 acttctaagg ctgtcacatt gggatagctt ggcacttgct cagacaagac ctgaccagca
    12961 agataacctt ctaggttggc aactgtttcc ttggtcgaat ggatagaatt gacatccaag
    13021 aggatgtatt tcataggata gatgaaattt tcaacatagc taaaagtcgc aatggcagca
    13081 ccgacggtca actctttttg cagcaagaga tagccgacca agccaaaagc tgttaattgc
    13141 accaaaaaca tggaaaatcc attgacaaca ttggccaggg tcttgaattg accaaagcga
    13201 aaacgggcct gttcactttc ttctactgac cgatggtgga cacggctgat ggagctaaat
    13261 gtttcgggat tgacacggtt cttagcagaa aagaggtcag tcaccacctg aaaatagctt
    13321 tccaaactct gtaaaaatgc ccgctgacgc tgagaaagag gtcctgaaat ccacttggga
    13381 atgaaaaccg ccaaggccga tgacaaaata atgcctaccg caaccagcgg atgaacaaag
    13441 agaaagaggg aaaccgcata gatgaacatg ctcaaactag agcggataat gtccatgagg
    13501 ggactcaggt aactctcctc aatggtttcc aaatcgttgt caaaaatgga cagataggca
    13561 gagacattct tctctgaaaa tttggctaaa ggctgtgata acaagctgtt tgccagacct
    13621 tttttagccg tgacataaaa aacctgagac accttccact cataaacctg ggaaatgtac
    13681 tggaagactg aattggcaat gatggtcaaa gcgtaggcca acaagagcca gacaagtcct
    13741 gtccagccca tctgaaaaat ataatcaaaa agatacttat ttaactcagg taatacgaca
    13801 ttggtcaaac tatataagat atggaaaacc aactgaatgg caataacaga ccgaagttga
    13861 tagatgattt ttttcataac tcctcctaga ataggaacaa tctgacaaaa attaattgct
    13921 ctccccaatc ggtaccaccc catcataacg agaaaggaca tcatcggaca cacggtggga
    13981 aatatgaatg agcgtcttat cagctagtga ggtaaggtaa ttttcaatca ctgcataggt
    14041 ttcctgatcc aaggcagaca gactttcatc cagcaacaag atatccttat cttgcagcaa
    14101 ggcacgaatc aagagcaggc gttgcttttg tccgccagac agtccgctat catcactaat
    14161 ttcctcgctc aaagaagcat aacttgggaa acgactgtca aggttcatgg tcttaatgag
    14221 aaacatcagc ctatcgtctg gaacctcccg tcccatggtc aagttgtaga gaaccgtatc
    14281 atggaaaaga gctccctctt gtggcagata ggcaatctta tcttgaatgg cttggtagga
    14341 caagtctgaa agagaggttt tatcaacgta aatatcccct gcttgcagtt ggctattctt
    14401 ggtcaaaata agagccaagg aagatttgcc agaaccactt tccccaagaa ttaaatactt
    14461 cttaccacgt tcaaacgcta cggtcaggtc ttcaaagacc tgtttttcac cgatagcata
    14521 actagccttg accagttgaa tactctggaa agctgaagct agttcctgtc ccttcgtttc
    14581 ttgacccaaa gtagatagct caaactcttg tttcaattcc ttaacggcat gcctgtccaa
    14641 aaaggctgcc gcaatgctat taattggatc caccaactgc tctgaaatgg tcagaatagc
    14701 tgtcaagcca ccgatggtca aggccccaga taaaacctga aaaccaccga taaagataat
    14761 cgaaagagta gtcagataaa agacaaaacc gactaagagc cgcatggtta ctgtcgttcg
    14821 attggcctga ttgaccttgt cattaactgc ttgatagcga tcattcagcc catctaaaac
    14881 ttgctgtctt tggcgactat ttttcacttg caaatagctc agaaaggtat ctgaaaccct
    14941 tgtattatag acctgctgac tgtccgaaat cgcctcctga ttgagccttc tccgcttttt
    15001 aaacaaatag ggaatcacaa ctggcaagaa tgagatcaga atcaagaaaa tagctgtcag
    15061 accatccaag ctaagaaggg ccaaactggc aatgccaaag gtacaagcac cttgaaaaat
    15121 cgtaaagaaa gcgtcgtaat aatcttcttt caccgtctcc aaatcattat tgagctgaga
    15181 aatataggcc cctgccccct gctcaacaaa ctgcctaaaa ggtaaatcaa aaattttccc
    15241 aataaaggta gcctgcaatt ggaaacctac ttgattgaga tagctgacat tggcaatctg
    15301 acgaatgtat tcaaagacca gcataacaag gacacttagc accatcagca caaaatagga
    15361 cacaaaggct tgtctatctc caaccgcaat agcatcaata ataaagcgat attggtacag
    15421 aaagccaaca ttgagcaggg ctactgcaaa aatacaagat aaggttagcc aaaaattcct
    15481 ctttttcatt tctcctccac tgtttgatag atttctgagc aaacatttgg tcgctttcat
    15541 ctatattata gaataggaat tggagatgat ttcattcgtc ccctatatgc aactatttct
    15601 cgttcactat tttttcaagt atcgtttcat accaatctgc tatattctgg ctatcaaccg
    15661 ctcgtaaaag tctgatacac tttctcatct ccaaaatagc attggcactt cctgtttttc
    15721 gataatcata aaaagcctta ccaaatttaa acaaaatccg ttcaaaaatt tccgtttcat
    15781 cgaaaaacag acctttgatg gtcttttcaa gaaagattgc gtcggcaagt tccttatgtt
    15841 gaacgctgac gagataggca ctaagtaaaa tttgagaaat tgccaatcga tgtagtttca
    15901 tttcacgata aaactgtgta cgaccaatta gttccctgca aaaaagcatc atagtctggt
    15961 gttctaattc atccatggta ttggcaaata gcaagagctc gtaataactc cagttgtcca
    16021 cttgaaataa gtaatccgtt aaaaaggctg tatcttcttt cgaaacaact actgtcttat
    16081 ctaagtcgct cagtttatac gcgattaaaa tagcattcaa ccggtgaaac tccctacgag
    16141 aatctctttc tgcttttgct aattgttcag acaagatttt ctttatggtt acaacatctc
    16201 tgatatagat ggattgtttt agttgttcca aaattctagt cagctcatct tttttgaaat
    16261 cctgactggc atacacgaac tcgtccacat ccacattcat ttctgccagc acaccaaata
    16321 atttactaac agtaatgtcg gattccccat tttcaaaccg agaaagttga gaagtagaaa
    16381 tatgtccctt ggcgacctcc gccagactct tcccctttcc ctctcttatc aattttaacg
    16441 tcctaccaaa acgattcatg cttcacctct acactcacga ttaaaaaatc atttgtaaac
    16501 ataattatta taccactcct tcccctattt gtgtccattt tcacataaag aaaaaccaag
    16561 ccagctatct gacttggtcg tgattttatt ctgtcgtttc agtcgctact ttgaaaaagt
    16621 ctttgtattt caaaaggtag ccttttcctg tggagaggtc gtattggacc agtttgagtt
    16681 cttctgcaac tttcgcatct cgctcagcct gtcctactcg gtccttatga agcacttctg
    16741 tcaagagggc atagtaagga ctgaccttgt tgttggtcgt ctccagcatc agtgcattca
    16801 tgtcgctaga attgaccaaa tcataatggt agtcttctgt ttcaaaatta ctccacacga
    16861 aataatctgt cttgtactgc gcgcttgggt ccgtcacgaa ggcagactct ggatacaaac
    16921 ctggtaggtg gtcaccgtaa aaaacaactg tcactttctt atccaaggtc ttaagctggt
    16981 ctagaaaatc ccttgttgcc tgatccgtaa aggataggag gcgaacatag ctggtcaagt
    17041 tttcattttc ctcagccgtg aagccctcac ccgatgctgt tatacctgca ggctctagag
    17101 aattccactg cacatggttc tgcatggtaa tagccgacac aaagctggta tcggcagaac
    17161 gtacctgatc caaaatcaag tcataggtct tcttgtcact gacaaaattc ccctgataat
    17221 cctcagccgt cacagtaaga ggatacttgg cactattgag agtgtagaat tgctcaatcc
    17281 ccagctgctt atagatagaa tttcggttgt aactggtatc gtagtaagga tggatggcaa
    17341 tacgattatc tgctggatag aggtcactga tacttggcaa cttcttcata tttggcgcca
    17401 catccaaata gactgaagaa atggatgagc tgtaattgta gaagggcaga ccactataga
    17461 cctgaaactc gatattagcc gtaccaccac catagtggtc actcttcatc aagccactgg
    17521 tagtctggct catgatgtac tcaatatttg gaaggacatt ttgactaagg gttacacctg
    17581 gaatccgacg cgggtcagcc aaactctcac taagaatgta gataaccgtc tggtcagtca
    17641 attgacctgt ccgttctgca ttgatttcct cagccaaggc ggtatactta ttcacaatag
    17701 ccttcatggt cttctcagag taattctcag gcatttccat actggtcttg ctgagttgct
    17761 gcaaccagag gaatgaaaga gtgcgataac gagccacaaa ggcgtagccc ttccagtcta
    17821 cgttccgcca gttattgacc tgagaaagaa taggaatcca gccagcaatc ttatggtctt
    17881 tttcattgcg aattgcccaa cccattccta aaatcaagga tacgatgact gaaattcctg
    17941 ccagcctttt ccagatagaa gcgacaatcc ttccttggaa gtacttctta tgaatacgtc
    18001 ggtagataaa cacaaggagg actataaaga cgagcgatac caagacaaca cgtagactga
    18061 taaagctgag aatcatcccc aagttcccga cccatttgaa atcattgggg gtcaatggct
    18121 ccgaacggta gcggaatttg agaaaattgg ccgtaaccaa aatgacgttt agactagcaa
    18181 tcacggcaac agataagatt tgaaggttga taactaggct aatgatgaca ttgaggaaaa
    18241 agaggcaggc aatttggaag acaatagccc ctggaaagag atggcgtgtg aaataagaac
    18301 cagtcgctcc agccatagaa gcctgataac caatatgcga tagcgtagcc agtgccaaac
    18361 tgataaagag catgctgtgg acattggttc gattggcctt aaactctaca aatgccttat
    18421 gaagatagcg aagaaaaatg taagtcccta taaaatgaat aggtgcaaac agcggtgtct
    18481 ggctgaaaaa ctctatgtaa gaacctttct caaccaaact ctcataatgg ctatctttcc
    18541 aataagatat agctagtgga ctgagagaaa gtaagctggt caagagcaaa tagccatctg
    18601 gtaccaagtg attggctgac cactggctta atttttctcg aattcccgtc ttcttccgcc
    18661 ataaaaatgc caacaatacg ggaagaagca acatcaatag aagttcaaac tgaaagagat
    18721 tattacggaa aatattccag ggttgatact tcttggcatt gagccgatag accaggttga
    18781 caagatatag aaaacctaga aaatagccga catacttggc aaaggttttg gtctttacaa
    18841 acttctcgta tgtatcaagc aagaccaata cataaaacgt aaaaatagaa taggcaagca
    18901 agggcagagg aataaaccag agcggaaaag atacaccgct taacaaaaga gcccgaccca
    18961 tcgccagcaa aacggttata atcataacca gaataaattg cttgcttgcc ttgggattga
    19021 tttgtttcat aacatttctc tcttaggaaa gatttgattt tcgataggca aagatatagt
    19081 aaatcaacca gactagccat ccagtcaaac tgataaagat aactggcaat aaccaccact
    19141 gttgcttgta ggataggaca agggtattct gccctttttt gctggtaacc gttggtacac
    19201 caatagtgga aagctccatt tcttctctat ccaagacctg gtcatttaaa acgagctgac
    19261 tatcttgata gacaatgatt ggcagggctg tttcctctgc ttccgacgcc gtccaagtca
    19321 ccaccagctg atcgccgtca acttctttga taaactcttg atttggtaaa atcacttggt
    19381 cacgataggt aaagtaggta ttatccgact cttcattggt gatgtgacct gtgctatctg
    19441 acaagtctgg tacgtagtct ggcgttgatt tctgagcaat gtggataaat tcgcccaagt
    19501 ctttagaata gaaagaagct cgtaactctt ccgttgtacc gtacagagtc gtatgaatgc
    19561 gtttttgcag gaaggtatcg ctatagtaat gcccattgat ttccttataa ctctgattcc
    19621 agaggaaacc aaccgaaaca agcaaagaaa taacagtcaa acctgaaaag attttctgta
    19681 ttttgtctga cacgcctgaa acctgtaccc ccacaaccgc caacaacaag acattggcat
    19741 ataggaaaaa gcgaaatgga aattgaatca attcgacaag tgtaattcct ttacctgcaa
    19801 acaactgcca agggaagagg ttggtcgaca agattaaaaa tactgcgtag gtcaaagcaa
    19861 gaccagccag aaccagcgat tgtttcttcc aatttttcac caagaaatag agatagattc
    19921 caaagaaaat tggcaatgga tatggatagt atagaaaggc tgttttgagc catgttacgg
    19981 tattgaggac aaattttttg ttaacaaatg gtggtaccaa agtgttggtc gcgttgatat
    20041 aaataagtgg caaccagatg ttgatggtca gaagcaaaaa aattcctacc gatagagcta
    20101 cttgcccaat aatcttcatt ttttggtctg atttccacca accaataagg aagagtacac
    20161 cataggcaat gaccaagaac aaggtcgata gcatatgaac ctgcaacatg agccctaccg
    20221 ctcctgccat gaggaatatc ggtacttttt tagtctgtaa gaaacgaacc gcaggaatca
    20281 aacaaagcgg aaagagagcc actccccagc tggtaaatcc ttgggtcgcc caccaatact
    20341 gaatggagta ggtcgtcaca aagaagaggg acaagaggat agaatgagca tatttgacct
    20401 tgacctcgcg catgagcagg tagagggagg tggcactcag agtacccaag agaagattgg
    20461 ttaaaatctg atagcggaac caggtcccac ttaagagtac caaggccccc tgtagatagg
    20521 caaaataagg cccatagaga gcattgacaa tccgtcctga ctgctgatag ccatacaaac
    20581 tgataatata ggagaaattc ccctccttca tctgcatagc agcatcatag aaacgattgt
    20641 agtggaaaat caagtccgca cctgtcacca tgcccttagt tagcaagtgg ggaaccaata
    20701 ataataaaga aaagcccaca aataggccta gtgctactaa atggggatgc tttttcagca
    20761 tagtttttaa catatagata ccttcataaa aaaagaggga aaccctctct tgtttttgta
    20821 aatattctgc caatttgcag acaatatttt tcaaaagtta gtcacatttc agtatagcaa
    20881 gctttctccc cactgtcaac gaacaaggca aacaggaaaa caattttcca ttaaaataaa
    20941 tattgattgc agatttctcc gcaatcaata cttgcttata aaccaacttc ctgaaggctg
    21001 tcagacaaac gtgcgaagtc agccatggaa agggcttctc cacgaacact ggcttccagc
    21061 tctgccatgc caagtgcctg cgtcagcttg tccttgactt cttcggactt gccgaaatgg
    21121 ttggtcaggt tgttccacag ggtcttgcgg cggtgcacaa agctggcctt ggacactcgg
    21181 aagaagaaat cttcgtcttt gacgctcacc agaggttgct cgcggcggac cattttgaga
    21241 atggcggagt ccacgtttgg tgcgggcaca aagacggtgc gaggcacgat aaaggccacc
    21301 ttggcagtca tgtagtactg gaccgcaatg gacaggcttc cgtaagcctt ggtgtttggc
    21361 tcggcagaaa tgcgatcggc cacctcccgc tgcatcatga ccacgaactc gctgaaggga
    21421 atcttgctct caatcaggtg catgaggatg ggggtggtga tgtagtaagg cagattagcc
    21481 acgaccttga tgggcaggtc agggttcttg aagttctgaa tctgggtctg caggtcggtc
    21541 tttaggatgt cttggttgac cacagtcaca ttgtcaaagc gacccaaggt atccgccaga
    21601 atcggaatca ggcggtcatc aatctcaaaa gccatgacct cagcggcatt ctccgccaaa
    21661 aactcggtca aggctccgat tccaggaccg atttcgatga cattgacatt ctgatcaatc
    21721 tctgccgtgt ccacaatctt ctgtaaaata ttggtatcgg tcaaaaagtt ctgaccgaag
    21781 gatttcttaa aggtaaaccc gtggcgttcc aggacagcac gagtaacgtt tttgtctgca
    21841 attctcatgt gtgttctttc ttgtttttta tttcgccatt tcactcaatc gtgaaataac
    21901 acttagtttt ctcatcgtcg ctgtaatgtc cagctgtttt tctaaataat tggtatttag
    21961 ttttttcttt cgagcatctc tcggaagata catgtataga cattgacttc ccagacgcaa
    22021 ctcctcatca ccaaagtctt ggtgcaataa tttgtttaat ttttcaccat ttatctcatc
    22081 attggtaaag accaaatgaa cacgaaaagg atcatagccc tcaccaaaag aattttcagc
    22141 aactgcttgt gttaactcca tctgatgttt gacaatgatt gctaactctg cacctatttt
    22201 ttctttaatg gtttgatgga taagccgact gagttcttca tctaatatat ctgtttcaca
    22261 aacaacattt ccactttgaa tataggtttg aacagaagtt aaaccaactt ccgtcaaaat
    22321 ttccgccaga tgggacatct taggaatttt attcttgcca acaggggtaa cacctcgaag
    22381 gaggacgact tttttcattt gttaatcccc ctcacccata atgatccttt aaagacaaaa
    22441 tatacagctt atctacttct accatataaa tcagccgatt ttcggcatca attctccgag
    22501 accaggcacc ctgataatca tacttcaagg gttctggttt ggcaatgcct tcaaaaggat
    22561 gtcgttgcat atccttgata atcttattga ttcgcttgag tgttttctta tcctgacctt
    22621 gccaataaag atagtcttcc caggcatcct ctgtaaaatg gattcccatg ttagtccgcc
    22681 tctatcaggt ttcgttcttg ggtttgtccc gttttgactt tagccatacc acgtaggact
    22741 ttttgagaca gataagtgtt ccgagcaaca gcgagggttt cttgtaaact atcccactca
    22801 ctctttgaga gtacaacaat atcttcctct ggatttttat taaccacgac caaaggttca
    22861 aactcgtcat tgaccttttt catatagtcc tttaagtgat ttcgaaaatg ggaatataca
    22921 atagcttcca taagcaatac ctctcatcat ttctaggctt actatagcat agaaaaaaag
    22981 agttgtcaaa cttattgtac aactctttaa cgattctcca ccttccactc accgtcttca
    23041 aaccagcaga aattctccgt cagctgtggc tgttcaaaaa tttccaacat gggttcaaaa
    23101 ccgtctgcca gctgaacatt cttcaaatcc gcacgattaa tccagaacac ttctccctca
    23161 tctgaagatt ggatagagcc tgaaaaatgg ctggttttgt agcaaaatac cagatagcga
    23221 tagtggtcag tagggtctgt ccagttttga atgccacaga gttctagatt ggataccgtc
    23281 aagcctgttt cttctttgac ctcgcggatg acggaggaaa taattgactc atttggctca
    23341 acatggcccc cagggaaagt cacaccaggc cacttttcag acttcctatc ctggactaac
    23401 accctctgac cgtctgtaat catgcacata ttggttaaga caacttgttc tcgtctagac
    23461 attccctatc tccccaaatc atcaaaataa tagagattca aaaattcttc ctcagtaact
    23521 ggatgttcaa aattgtaaaa ccagcgatag acttccacgg ctagtccatc aaactctacc
    23581 ctgtcgtcca tttcttgcac accggcaata tgaaacaaac ggctctgctt ccaaatacca
    23641 tccgcattga catagccatc ttcaactaga ccacgcaaat agtctgctag tttgttctta
    23701 tcaacctgct catcctccca aacaaggaca tcagccggca gcaagtaggt cacttcttca
    23761 taagatgaat aattttcata agaaggttca aactcgtttt taaccaagca cttaacagca
    23821 tagaccctat ccatgatagc tccccatcgc ctcctccact tccgctagac ttatcccaaa
    23881 cagctccaat cgtttgagga gttgcttacc gttgcagtag ccgatgcgga gtttttctcc
    23941 cagatactcc ctccgcttgc gactatctcc gcccataagg agccctaggc gcatcaggtc
    24001 tgacttggtg atgtcaaagt tatgttcatc atcatagtag ccacgcacgc ccgcgagcgc
    24061 cttttccaag tcggcaaagc tggcgtgctc aatgcccaag gaccgccctt ttgtcttgga
    24121 tttaggtgta gcctcgtccc gctgtaaaaa agcgtgttta accgtgggaa tggcctgcat
    24181 aatcatcttc cgaattcgct ctccattgta gtccgggtca gtaaagacaa tgacgccccg
    24241 caggtcatgg agtttctcga tgcgttctaa gtcatcgtct gatatggcag agcctctggt
    24301 ttcgtaggtg tccacctcgt aaaatcgttt taggtttgct gtatcatcct tgccctcgac
    24361 aacgaggact tcttgtatct taattttctg agtcaattct gaacaagctc cttgcattct
    24421 cgtaggtcgc tctcgccacc tcttcgaccg actggttgcg aagctgggcc agcatatcca
    24481 ccacatatct ggtgtagccg gtgcgatttt cccgaccacg cttgggaact ggggccaggt
    24541 agggcgcatc cgtctcgacc aggatttttt ctaggggcaa tgcttgcgcc gcttcctgaa
    24601 gttcaacggc ttttttgaag gtcaccactc ccgagaagga gatgtgcatg cccaggtcca
    24661 tgaaagcttg agcctcctcc agagtgccag agaaggaatg catgatgcct ccacgcggac
    24721 cgacgccgac ttccttgatg atctggtaag tatcttccaa agcatcgcga gtatggacca
    24781 caaagggcaa atccaactgc ttggccagct ccatctgtcg cttgaaaaca cgagcctgga
    24841 tttccttatc cgccgtcatc cagtagtaat ccagtccaat ctctcccagg gcaatgacct
    24901 tgggatgctg gagggctttg agcagatagt tttccacttc ctcgtcataa gtgccagcct
    24961 ctgtcggatg ccagcccaat gtcagataaa tttcagggtg ctggtcagca agctccatag
    25021 ccttgtcaat ggttgcacgg tcaaaaccga ccacattgtg gagggtgacc cccatctcct
    25081 tggcaaagtc taattcttct tggacccgac cgtcaaactg ctcgacgttg aggtgggtat
    25141 gggtatcaaa aatttgtatc atcgttccat cactttcttt cctactattg taacatattt
    25201 cagaagattc ttatgagaag aaaaaaaacc agcagactcg agtttctgct ggcttctctt
    25261 ttcatcttct tatgctactg taagaacttt acgtccctta cggcgacgag cagctaacac
    25321 gcgacggctg tttttagttg ccatacggct acggaaaccg tgtttacgcg cgcgacggat
    25381 tttacttggt tgaaaagtac gtttcacgat gaatacctcc tcttagattc ttgtattcgt
    25441 ttagccggct agttttgatc agttactaaa cataccaaac tattttatat aaattctgtt
    25501 cgtttgtcaa gctattctgc catactttta ggaaagaatc agaaaatcat tgaaaaaaga
    25561 ggactagcct ctttttaatc atgatttcct tcaatatcta caacgacata gcggtttggt
    25621 tcgctacctt ctgaatagct cgtcaaacca tccattttag agataatgcg gtggataatt
    25681 ttacgttcgc tacttgacat cggatctgta tggtaggctt cctgctctgc caaaacacgt
    25741 tctgccaatt tttgtgcgta gccttgaaga acctctgcgc ggtgttctac ataatcattc
    25801 acattgattg taatatagaa attacgctca taacggttgt ataagaagtt ctgagccaaa
    25861 agttgcaaag cctttaagac ttttccgtga taaccgataa cacgacctgg ttcattggta
    25921 tccacttgaa tattgattgt acggcgatta tgacttgtat caatacgcgc ctcaacatcc
    25981 atatcatcca gaatttcttg tacataagct gtcacttctg aaacaacttg ttcaatatca
    26041 tactggggct caatcttaat atctaaatca gcaaaattat ctgcttgatt ttctgagacg
    26101 acttcttgat ttacgtcttc cttagcagat gttgttgcat ctgtagtagt tagtaaatct
    26161 tctgaaagaa tttcaatccg acctgtttct tccaaaatcg ttgtcgcttc tttttcattt
    26221 ttcaagatct gcgctttaat atcatcatca agcgtttgac cagacttttc aaattctttt
    26281 accgctgcaa caacttttcc taggtcaatc gtagcctctg aaacgctttt tactggttca
    26341 ttgaggtcat taatttcact tggaacgcca cgaactgctt tctgattagc cttaacaacc
    26401 gttgtttcat tgatgacatc aatatccaca atcgctggct ttttaccgaa accaaggaaa
    26461 ccttttttct cacgcgcaac cacagtaata tgtgcttttt ttcgaggaat atttagctct
    26521 accaagccat tctggatggc ctcttcaaca cttgctcctg taaatttcat cttctctctc
    26581 ctagttttcc tatttctttt tctgtgcttt tttctgtgcc cgtcggattt ttgcctgacg
    26641 ttctttttcc gcatcaattt tcgcttgacg ctctgctatt attttaaacg gattattgaa
    26701 caccaaggtt tgagcaacct gataggcatt tgacactgtc caatacaaag ccaccccact
    26761 agcagctgcc acagcaaaga aaaagatcat cacgggcatg acataggtca taattgtcat
    26821 agccatattc ttctcaattg ctgatttatt ggtcaaccat gagctgagga atgtaaacac
    26881 tgcagccata atcggcaaaa taaagaacgg atccggctcc ccaagattta accaaaggaa
    26941 gtgacctact ttcaaggctt caacacgtgt cagagcttga aagagggcca aaaggattgg
    27001 catttgaata aagagcggaa tcatggacgc tctcatgctg acgccattct ctttgtagag
    27061 agcttgcgtt gcttcataaa gctgctggcg actttccata tccgttcctg gatactccgc
    27121 ttgcaacttt ttcagctgag gttgaagctc ctgcatcttc cgtgaggaat tcatctgtat
    27181 ttggaacaaa ggcaacagaa gggttcgaat taaaatggta aaaagtataa taccgattcc
    27241 aatttgaccg ttgatagata ggaactgaat aatgctggca aaccagtaaa ttaatctatc
    27301 ccacgcatct gtagattgac tggtcaccgg ccctgttccg caggctgtta aaacaattag
    27361 agatgctacc agtagacctg cccatttaac tttctttttc aatcacaaca ccttcctggt
    27421 atagtttagc tagtttcaaa acatggatga ggttttgctt catttcctga taggacaatt
    27481 cctccacacc ttttcgagca atgataacaa agtcatctgc taccagttga tgttggcatt
    27541 caattaagat gtgacgaatc ctgcgcttaa tcttatttcg catgacagcg tttcccaatt
    27601 ttttgctgac agataaacct actcggaaat gcttttgctc tttaggtaat cggtagacaa
    27661 caaacctccg attggcgaca ttgtttcctt ttgtaaaaat gtcattaaaa tctcgttcac
    27721 gcttgacacg atagcttttt ttcaaactgc cactccatct ttcaaaatta cttctattat
    27781 accacaaaat tcaaaaaagc caataaacat accgtttata ggctttttgc gttctgaatt
    27841 tcctctttgg cacttttcaa ctggtctgca atcgattcaa aacctgtccc gccaagggaa
    27901 tttctacgac taacagcaac tttggaggac aaggcatcat aaatatctgc ttgaataaga
    27961 ggcgaaatag cctgataggt ctcaaatgat acatcctgga gatagtgtcc tgccttgcta
    28021 cactccaaga ccagttttcc aacaatctca tgcgcttggc ggaagggcag acctttacta
    28081 gccaaataat cagccaactc tgtagcattt gaaaagtcct tctctgtcga ttgagccatc
    28141 ctttccttat ggaccgtcat agattgcaac atccctgcta aaatatcaat tgaaatcaaa
    28201 actgtttctg ccgtgtcaaa catgccttcc ttgtcttcct gcaagtcctt attataggtt
    28261 aaaggaaggg atttcatgac tgtcagtagg ccaactaagt tcccataaac tctacctgtt
    28321 ttcccccgaa tcagctcagc catatctgga tttttcttct gaggcatgat ggaagaacct
    28381 gttgaaaagg tatcggatag ggtgacaaat tggtattcat gtgaacacca gttaatgatt
    28441 tcttcacaca aacgcgacat gtgcatcatg aggatactgg catttgacag aaattccaag
    28501 ataaaatcac ggtcagacac agcatcaaga gaattactat agggcttggc aaatcccatc
    28561 aaatcagacg tcatccgacg gtcaatcgga aaggtcgtcc ctgccaaggc cgccgcacca
    28621 agtggggata catttgtatg ctgcatgttg aatgcaaagc gctcactgtc tcggctgaac
    28681 atgttgtaat aggctaacaa gtgctgagca aaactaatgg gctgggcatg ttgcaagtgg
    28741 gtatagccgg gcatgattgt ttccacatgc tcctgtgcaa ggtctaccaa aatctgacgt
    28801 aggttggtca atttgtctac aacttgaaag agggtatcct tcagatagag gtgcatatcc
    28861 gtagccactt ggtcgttacg agaacgagct gtatggattt tgcctgcaac tgagcctatt
    28921 ttctccgtca atagactttc aatattcatg tgaatgtctt cgtttcgaat atcaaatacc
    28981 agcttgccag cctcatactc ctctagcaat tcttccagac cagcttgaat gacctgagcc
    29041 tcagcttgag agacaatccc agtttgcccc agcatcttga catgggccag tgagccttga
    29101 atatcatact tggccaattt ttggtcaaag cgaatggagg ctccgaattc ttcaacccat
    29161 tcctcaagac tggcttcaaa gcgacctccc cataatttct ttgcttccat aagctcctac
    29221 tttctagctc tttttatgaa tttccgcatt gaccttggtt ggtaatcccc aaagcttgat
    29281 gaaaccaact gctgcatctt gatcaaaggt atctgcactg gtataggttg ccaaatcttc
    29341 gtcataaagg gaatttggag atttccgagc aaccactttg gctgacccct tatacaattt
    29401 tacttttgcg gtgccattaa caactgcctg ggtctgagca agataggcct tcaaggcatc
    29461 tgtcgcaggg ttgaaccaca ggccattgta aatcaagtta gagagttcat ttgaaacaat
    29521 tggtttgaaa tgcgatactt cccgcacaag ggtcaaatct tcgatttcct tgtgggctgt
    29581 cagaagggta atagcacctg gacactcata aatttcccgt gacttgattc cgactaaacg
    29641 attttccaca tggtcaatcc gacccacacc atgtttacca gcaatgacat tgagtctttg
    29701 aatgagatta gcaagactta acttttcacc atttacagca acaggaatac cggctttaaa
    29761 ctcaatatcg acatactcag gagtatctgg tgcattttct ggagaagtag tgatgccaaa
    29821 agcatcttct ggcgcttcat tccatggatt ttctaaaact ccgcactcat tggcccgtcc
    29881 ccaaaggttt tggtcgactg agtaaggact gtccaggtca gctgggactg gtacaccatt
    29941 ttccttggcg aagatgattt cttcttcacg cgcccacttc cattcacgga caggagccac
    30001 gactttcaag cttggatcta gggctgcaat ggctacctca aaccgcacct ggtcatttcc
    30061 cttaccagta cagccgtggg cgatagtggt tgctcctgtc ttatgagcca tttccaccaa
    30121 ctttttagaa atcaagggac ggctgagagc cgataccagc ggatattttt gctcatagta
    30181 ggcatgggct tgtagggctg gtaggacata ttcttgagcg aattcttctt ttacatccaa
    30241 tacatgggac tcaatagcac cgattgataa ggccttatca tgtatgaagt cgagatcctt
    30301 gccctctcca acatccatac aaaccgcaat gacatcatag tctttcttca accaagcaat
    30361 cgcaactgaa gtatcaagtc caccagaata ggctaaaatc aatttttctt ttgtcataag
    30421 tgttctcatt tctat
//
LOCUS       DASGBY010000007        30324 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.007, whole genome shotgun sequence.
ACCESSION   DASGBY010000007 DASGBY010000000
VERSION     DASGBY010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 30324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30324
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.007"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            103..1125
                     /locus_tag="U1396_000234"
     CDS             103..1125
                     /locus_tag="U1396_000234"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEM5341460.1"
                     /translation="MTVNIDWEKLGFSYMKLPYRFIAHFKNGQWSEGQLTEDAELHIS
                     ESSPALHYGQQAFEGLKAYRTKEGKLQLFRPDQNAERLQRTADRLLMEPVPTDLFIKA
                     CKEVVKANADYVPPYGTGGTLYLRPLLIGVGDIIGVKPAEEYIFTVFAMPVGNYFKGG
                     LAPTNFLIQDKYDRAAPNGTGAAKVGGNYAASLLPGQYAKKQGFSDVIYLDPATHTKI
                     EEVGSANFFGITADNEFVTPISPSILPSITKYSLLYLAEHRLGMKAVEREVLVEELDQ
                     FVEAGACGTAAVISPIGGIQIADKLHVLHSETEVGPVTRKLYEELTGIQFGDIEAPEG
                     WIVEVD"
     gene            1192..1425
                     /locus_tag="U1396_000235"
     CDS             1192..1425
                     /locus_tag="U1396_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2969 domain-containing protein"
                     /protein_id="HEM5341461.1"
                     /translation="MSKKDKKIEIQIEDSKVLVNREEFPGYRLVIGKKVIGEIAELAE
                     NNFAVIKNGNTESFYKKLEKAVGNIIENYNLSH"
     gene            1477..1557
                     /locus_tag="U1396_000236"
     tRNA            1477..1557
                     /locus_tag="U1396_000236"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1511..1513,aa:Tyr,seq:gta)
     gene            1833..1904
                     /locus_tag="U1396_000237"
     tRNA            1833..1904
                     /locus_tag="U1396_000237"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1865..1867,aa:Gln,seq:ttg)
     gene            2028..3233
                     /gene="rpsA"
                     /locus_tag="U1396_000238"
     CDS             2028..3233
                     /gene="rpsA"
                     /locus_tag="U1396_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEM5341462.1"
                     /translation="MNEFEDLLNSVSEVTPGDVVTAEVLTVDAGQANVAISGTGVEGV
                     LTLRELTNDRDADINDLVKVGETLELLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKL
                     VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTRNTERFVGQEFDAKIKE
                     VDPAENRFILSRRDVVEAEAAAARAEVFGKLAVGEVVTGKVARITSFGAFIDLGGVDG
                     LVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQPGPWDGVEQKL
                     AAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVL
                     EVNAADERVSLSIKALEERPAAVEGEEKAEKRAPRPRRQKREEKRDYELPETQSGFSM
                     ADLFGDIEL"
     gene            3271..3342
                     /locus_tag="U1396_000239"
     tRNA            3271..3342
                     /locus_tag="U1396_000239"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3304..3306,aa:Arg,seq:ccg)
     gene            3404..4432
                     /locus_tag="U1396_000240"
     CDS             3404..4432
                     /locus_tag="U1396_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016503195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid lyase"
                     /protein_id="HEM5341463.1"
                     /translation="MLHFENDYNKGAHPALLEALVASNQEGLSGYGTDKYTESAIEKI
                     RLATDCPHAQVTFLAGGTQTNQIVISSMLASYEGVIAADTGHIAVHEAGAIEFTGHKV
                     LALPHTDGKLVASEVENYISDFYADANHAHMVHPGMVYISHPTEYGTIYSKTELEDLS
                     KVCQQHNIPLFLDGARLGYGLAARETDLDLKTIAELTDVFYIGGTKLGALMGEALVFT
                     KNNQPKNFVSIVKHHGALLAKGRVTGVQFDCLFTDDLYLKLGRHTIAMAEQLTQILEE
                     KGFQFYLKSPTNQQFVIVKNEELTRLTEAGIAYGFWEKYDDSHSIIRFATSWSTSQAD
                     IDELINIL"
     gene            complement(4451..4834)
                     /locus_tag="U1396_000241"
     CDS             complement(4451..4834)
                     /locus_tag="U1396_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341464.1"
                     /translation="MKYVILKTPVFVWLLIFALIQIFGLSSFLPEPFDTRSLLPMGVL
                     TGCSIRVSSEVKDQDGQYAPFKYLWWVILGWTVIGILFGITIKAPLELHIALIVHAIA
                     GGIGYSLIERYAVYRYHYLQTKKKG"
     gene            complement(4895..5311)
                     /locus_tag="U1396_000242"
     CDS             complement(4895..5311)
                     /locus_tag="U1396_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341465.1"
                     /translation="MNTRKNTNKKPAGLTNFQKYLTFIGSILGIITACITIYTFTAKP
                     TTSSTSPSTTISSSSATSSPSQSSSDNPLTGVQDLTSSSSETTSSTQTETSSSVESTA
                     SSSSTETSATQASETRTETSTDTEVTSGASETTSNQ"
     gene            5424..6566
                     /locus_tag="U1396_000243"
     CDS             5424..6566
                     /locus_tag="U1396_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018543459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5341466.1"
                     /translation="MIYFDNAATTQVYPEVLKTYTEVATKIWGNPSSLHSLGSQATRI
                     LEASRKQIAELLGKDSKEIFFTSGGTEGDNWVIKGVAFEKAHLGKHIIVSAIEHPAVK
                     ESALWLKTQGFEVDLAPVNAQGFVDVSALESLIRPDTTLVSIMAVNNEIGAIQPIQEI
                     SQLLADKPTISFHVDAVQAIGKVPTERYLTDRVDFASFSGHKFHSVRGVGFVYVKAGK
                     KIAPLLTGGGQESDKRSTTENVAGIAATAKALRLTLDKAVDSQKRLAAMKQILVDELG
                     KYDDVTVFSGLEDFVPSIVTFGIKNIRGEVIVHAFEDHQIYISTTSACSSKAGKPAGT
                     LIAMGVPQKLAQTAVRISLDDDNDMGQIEQFLTIFKQIYQNTQKVR"
     gene            6568..7785
                     /gene="thiI"
                     /locus_tag="U1396_000244"
     CDS             6568..7785
                     /gene="thiI"
                     /locus_tag="U1396_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HEM5341467.1"
                     /translation="MNYSEIMIRYGELSTKGKNKMRFINKLRNNIKHVLSVYPEVTVY
                     FDRDRGHVYLNGADYQEVSASLKKIFGIQNFAPSYKIEKSVPALKEAVVEIMQSIYKE
                     GMTFKIAARRSDHNFELDSRDLNQVLGDAVFTAIPNVQVQMKSPDITLRVEIRPDAAY
                     ISHEEIKGAGGLPVGTSGKGTLMLSGGIDSPVAGYLALKRGVEIEALHFASPPYTSPG
                     ALKKAHDLTRKLTAFGGNITFIEVPFTEIQEEIKEKAPEAYLMTLTRRFMMRITDRVR
                     EERGAMVIINGESLGQVASQTLESMQAINAVTNTPVIRPVVTMDKLEIIDIAQEIDTF
                     DISIQPFEDCCTIFAPDRPKTNPKIKNVEQYEARMDVEGLVERAVAGIIVTEITPKEE
                     VKDEVDSLIEDLL"
     gene            7907..9232
                     /gene="brnQ"
                     /locus_tag="U1396_000245"
     CDS             7907..9232
                     /gene="brnQ"
                     /locus_tag="U1396_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HEM5341468.1"
                     /translation="MKKGALTGLLLFGMFFGAGNLIFPPALGVLSGENFWPAILGFVV
                     SGVGIAVIALIVGTLNPKGYVHEISRKISPTFATIYLVALYLAIGPFFAIPRTATTSF
                     EIGIAPLLGEANLGIWLFGFTALYFVAAYLIALNPSQILNSIGRILTPVFAILIVILV
                     VLGIFKYGSTSPLPAAEAYSAGQAFGTGFIEGYNTLDALASIAFSVVAVNTLKHLGFS
                     SKKEYVSTIWSVGLVVALAFSALYVGLAFLGNHFPVPADVLASDTNKGVYILSQATQA
                     IFGPGAQIFLAAMVIVTCFTTTAGLIVSSGEFFAERFPRFSYKVYATIFTLIGFGIAN
                     LGLNNIITFSVPVLLVLYPITICIVLIAIVNKFVPLSTYGMQLTVGVVTALSLVEVLA
                     GQFNWTAISKIISALPLAGQSLAWLLPALVGIVLSLFLPNKQESEVFEM"
     misc_feature    9300..9388
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            9424..9738
                     /gene="rplU"
                     /locus_tag="U1396_000246"
     CDS             9424..9738
                     /gene="rplU"
                     /locus_tag="U1396_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEM5341469.1"
                     /translation="MSTYAIIKTGGKQVKVEVGQAIYVEKLNVEAGQEVTFEEVVLVG
                     GEKTVVGTPLVAGATVVGTVEKQGKQKKVVTFKYKPKKGSHRKQGHRQPYTKVVINAI
                     NA"
     gene            9785..10078
                     /gene="rpmA"
                     /locus_tag="U1396_000247"
     CDS             9785..10078
                     /gene="rpmA"
                     /locus_tag="U1396_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEM5341470.1"
                     /translation="MLNLNLANLQFMAHKKGGGSTSNGRDSQAKRLGAKAADGQTVSG
                     GSILYRQRGTKIYPGANVGRGGDDTLYAKVEGVVRFERKGRDKKQVSVYPIAK"
     gene            10270..10419
                     /locus_tag="U1396_000248"
     CDS             10270..10419
                     /locus_tag="U1396_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341471.1"
                     /translation="MFRGSGMGSNLVKLVIDDLANRNSKAFQIAVEEEDLGTWKLYKR
                     RIVYL"
     gene            10491..11405
                     /locus_tag="U1396_000249"
     CDS             10491..11405
                     /locus_tag="U1396_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5341472.1"
                     /translation="MNIQQLRYVVAIANSGTFREAAEKMYVSQPSLSISIRDLEKELG
                     FQIFSRTSSGTFLTQKGMEFYEKAQALVKGFDQFEHLYLQPEEGEKTFSISSQHYDFL
                     PPLITEFSRSHPQYPHFRIFESTTVQILDEVAQGYSELGIIYLNERNTKGIMQKLDKL
                     HLQAVDLSAFQTHIYLREDHPLTKKAEVDPADLVGLPTVRFTQEKEAYLYYSENLIDT
                     SDSSVVFDVTDRATLNGILERTDAYATGSGYLDDESVNGITVIPLKGKVDNRMVYVKR
                     ANDELSSCAKDFIETMQAYFDKKKDENA"
     gene            11398..11862
                     /locus_tag="U1396_000250"
     CDS             11398..11862
                     /locus_tag="U1396_000250"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEM5341473.1"
                     /translation="MRKIGFPFLMVVLIGLDQFVKAWTVANIELDTVEPLLPGVISLA
                     YLRNYGAAWSILQNQQWFFTIMTIVAVTGLVWYYIKQIKGNIWTLFSLSLMIAGALGN
                     FIDRLRLGYVVDMFHLDFISFPVFNVADVCLTVGVGILFICIMKEESNGSKS"
     gene            11846..12739
                     /locus_tag="U1396_000251"
     CDS             11846..12739
                     /locus_tag="U1396_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5341474.1"
                     /translation="MEVRVEVGGIRLDKALSDLTDLSRSVANEQIKAGQILVNGQPKK
                     AKYSVQVGDVLTYQIPEVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTS
                     GTLVNALLYHVKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS
                     LRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTAKGKEAVTRFQVLERFGDYTLV
                     ELTLETGRTHQIRVHMAYIGHPVAGDEAYGPRKTLKGHGQFLHARTLGFTHPRTGEVV
                     EFTAEAPAIFQEALEKLRKAE"
     gene            12820..13158
                     /locus_tag="U1396_000252"
     CDS             12820..13158
                     /locus_tag="U1396_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEM5341475.1"
                     /translation="METLPNCPKCNSEYVYEDGALLVCPECAYEWNPADVAEEESGPV
                     AIDANGNRLADGDTVTLIKDLKVKGAPKDLKQGTRVKGIRIVEGDHNIDCKIDGFGAM
                     KLKSEFVKKI"
     gene            13206..13853
                     /locus_tag="U1396_000253"
     CDS             13206..13853
                     /locus_tag="U1396_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Pr6Pr family membrane protein"
                     /protein_id="HEM5341476.1"
                     /translation="MKHQSILFYSRCLLAILAITGTALEIIKYGIGMLMYYTVQSNLL
                     VSLFAVYMVYAMSKGVDLQTSHFLRIKAAVTMSIMITCVVYHFMLAPLADDFWRLENL
                     LCHYIVPLYFLLDTLIVDRQQQYKWFDPIWWTLLPVLYMIFGLVNGLFIKIPIPDAKD
                     SPFAYFFLNVPKYGWTYVLTYAGVIFVAYLVCGFLLAGLKSINLKTSLSFGKNSQ"
     gene            14052..14573
                     /gene="pyrR"
                     /locus_tag="U1396_000254"
     CDS             14052..14573
                     /gene="pyrR"
                     /locus_tag="U1396_000254"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEM5341477.1"
                     /translation="MKTKEIVDDMTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVF
                     IAKRIQERLKQLEGIDVPLGELDTKPFRDDMKVEDDTTNMTANVNDRDVILVDDVLYT
                     GRTIRAAIDNIVSLGRPARVSLAALVDRGHRELPIRADYVGKNIPTSRSEEIIVHMAE
                     IDGQDAVLLVEGA"
     gene            14629..15552
                     /locus_tag="U1396_000255"
     CDS             14629..15552
                     /locus_tag="U1396_000255"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002889464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEM5341478.1"
                     /translation="MTITNGKVSLKHLVTMETLSNEEVLGLIQRGIAFKRGEKVELDR
                     KYYASNLFFEDSTRTHKSFEMAELRLDMGMIDFDARTSSVNKGETLYDTILTMSALGV
                     DICVIRHSEVDYYKQLIDSPTIQTSIVNGGDGSGQHPSQSLLDLMTIYEEFGTFEGLK
                     IAIAGDITHSRVAKSNMQILKRLGAEIFFAGPEEWYAEEFDVYGQHLNIDDIVETVDV
                     LMLLRVQHERHDGDGGFSKETYNRLHGLTEERYKRLKDTAIVMHPAPVNRDVEIDDSL
                     VEAPKSRIVRQMQNGVFVRMAILEAIVNGKA"
     gene            15800..16879
                     /gene="carA"
                     /locus_tag="U1396_000256"
     CDS             15800..16879
                     /gene="carA"
                     /locus_tag="U1396_000256"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEM5341479.1"
                     /translation="MSKRRLILENGTIFEGEAFGADIDVTGELVFSTGMTGYQESITD
                     QSYNGQILTFTYPLVGNYGINRDDFESIKPTCKGVVVSEWARRASNWRNQMTLDEFLK
                     AKKIPAISGIDTRALTKIIRQHGTMKATLANVGDSVEHLTDQLRATVLPTNNIQQVST
                     KTAYPAPGVGRSVVLVDFGLKHSILRELAKRDCNVTVVPYDTTAEEILALNPDGVVLS
                     NGPGNPDDVPEALDMIRGILGKIPIFGICMGHQLFAKANGATTYKMKFGHRGFNHAVR
                     EIATGRVDFTSQNHGYAVAREDLPECLMITHEEINDKSVEGVRHKYYPGFSVQFHPDA
                     APGPHDASYLFDEFMELMDSFKKGQ"
     gene            17814..20993
                     /gene="carB"
                     /locus_tag="U1396_000257"
     CDS             17814..20993
                     /gene="carB"
                     /locus_tag="U1396_000257"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEM5341480.1"
                     /translation="MPKRTDIKKIMVIGSGPIVIGQAAEFDYAGTQACLALKEEGYSV
                     VLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTGLNMAMEL
                     SKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEALEFAA
                     EIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKEIEY
                     EVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIRALK
                     IEGGCNVQLALDSHSFKYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEM
                     VNPVTGTTYAMFEPALDYVVAKIPRFPFDKFEKGERRLGTQMKATGEVMAIGRNIEES
                     LLKACRSLEIGVYHNEMPELSQVTDDQLVEKIVKAQDDRLFYLSEALRRGYTVEELAQ
                     LTKIDLFFLDKLLHILEIEQELATNFDNIDLLKKAKKYGFADRKIAELWGRTESYIRQ
                     LRTEHKIVPVYKMVDTCAAEFESATPYFYSTYEWENESIRSEKESVLVLGSGPIRIGQ
                     GVEFDYATVHSVKAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDL
                     EKPKGVIVQFGGQTAINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQP
                     PGQTATNEEEALEAARKIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEH
                     PVLVDSYIVGRECEVDAISDGKDVLIPGIMEHIERAGVHSGDSMAVYPPQTLSKEVQA
                     TIADYTKRLAIGLDCIGMMNIQFVIKDETVYVIEVNPRASRTVPFLSKVTDIPMAQVA
                     TKLILGQSLAELGYQDGLYPESNQVHVKAPVFSFTKLAKVDSLLGPEMKSTGEIMGSD
                     LTLEKALYKAFEASYQHLAEFGNVVFTIADEDKEEVLGLAQRFYELGYGLLATAGTAA
                     FLTENGLAVTTVGKLGDDSRPDIPSLVRAGKVQAIINTVGKKRVADGDGQVIRSSAIE
                     GGIPLFTALDTAEAMVKVLESRSFMTQAI"
     gene            21057..21812
                     /locus_tag="U1396_000258"
     CDS             21057..21812
                     /locus_tag="U1396_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5341481.1"
                     /translation="MIVTTSLGMDEGLVYRARRIASELGIEYKERKKQSVGKMLGTYE
                     AVLVLYKDKLILEQRGGQVLFFHPDTAMLRIKSGRDPLLELLGKEKQSIIDCTMSLGS
                     DSIVLASAGHRVTALESSKLVHFIVSRGLQDFDSGLQEVNRAMKSIQTIWTDSLTYLK
                     EQKDKSVDVIYFDPMFSEEIKESQNLSGLSTLADRSRLTEEIVSEAKRVARKKLIIKA
                     HFRDQVFEEFGFKRHVRPNQKFHYGEIILEEEV"
     gene            21809..22456
                     /gene="pcp"
                     /locus_tag="U1396_000259"
     CDS             21809..22456
                     /gene="pcp"
                     /locus_tag="U1396_000259"
                     /EC_number="3.4.19.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyroglutamyl-peptidase I"
                     /protein_id="HEM5341482.1"
                     /translation="MKIIVTGFDPFGGESINPALETIKSLPKTIAGAEIILVEIPTVF
                     DKAADVLEEKMAEHLPDAVLCIGQAGGRVDLTPERIAINQDDARIPDNEGQRPIDRTI
                     REDGQPAYFSTLPIKAMVEAIHRIGLPASVSNTAGTFVCNHLMYQALYLAEKQFPKTK
                     AGFLHIPFLPEQVVDKPGLASMSLNDIVRGVEVAIGAIVEYRDKEDIKKGGGSTH"
     gene            22456..22764
                     /locus_tag="U1396_000260"
     CDS             22456..22764
                     /locus_tag="U1396_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HEM5341483.1"
                     /translation="MKNIMEARKRVEEMEKIFNRQLELNQSLSDNMAQLNQEQSTYLQ
                     LLDYYQSQTYMEDLDLSNKGYFNGIPCGVLSEDGVYNLLFDRTNLASQLRELADMLEQ
                     "
     gene            22889..23161
                     /gene="rpsP"
                     /locus_tag="U1396_000261"
     CDS             22889..23161
                     /gene="rpsP"
                     /locus_tag="U1396_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEM5341484.1"
                     /translation="MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLL
                     AENSVTLKEERVLEWLAKGAQPSDTVRSLLSNAGVLKKFHEQKFSK"
     gene            23183..23425
                     /locus_tag="U1396_000262"
     CDS             23183..23425
                     /locus_tag="U1396_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEM5341485.1"
                     /translation="MDMIENLIIAIVKPLISQPDSLTIKIVDTPEFLEYHLDLDQSDI
                     GRIIGRKGRTISAIRTIVYSVPTSDKKVRLVIDEKE"
     gene            23501..25237
                     /locus_tag="U1396_000263"
     CDS             23501..25237
                     /locus_tag="U1396_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341486.1"
                     /translation="MNLIWTYLKKYSKWIALDLLGAFLFVVVNLGLPTFLARMIDQGI
                     TKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKLTTNIVKDIRNDLYEKIQDYSHH
                     EYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
                     VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRF
                     AEVNEEYTDISKKLFNLTGLTEPLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFI
                     EYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNEEGITKSDTRGYLEF
                     ENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRIL
                     VDGVDVRRYNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAGLHDATDVAQAK
                     EFIESKEEKFDTHLAEGGSNLSGGQKQRLSIARAIVKQPDIYIFDDSFSALDYKTDAI
                     LRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNEIYREIA
                     NSQLNRQSLTEE"
     gene            25246..27015
                     /locus_tag="U1396_000264"
     CDS             25246..27015
                     /locus_tag="U1396_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341487.1"
                     /translation="MKNRSVFTRVWDYLRRYQSSVFLAIFLKTISAVMNALEPFVLGL
                     IITELTKNLLDIANGVEGAQINYSYIAIMLAIYALRALLYEIGAYGSNYFMTKAVQGA
                     TKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
                     LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLT
                     GFNVLKLYGREEISTEEFRQITADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLS
                     GLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSSLERIFSVLDELDEE
                     DANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLI
                     NLLMRFYDVTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDA
                     TDEEIVEAAKAANVDHFIRTLPGGYNMEMNQESSNISQGQKQLLTIARALLADPAILI
                     LDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGN
                     HESLLADKGFYYNLYQSQFSESK"
     gene            complement(27059..27982)
                     /locus_tag="U1396_000265"
     CDS             complement(27059..27982)
                     /locus_tag="U1396_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM5341488.1"
                     /translation="MKHSRRARRSRTQKKQLVPMLLGIALLVVTLLSIFLIFLKQPSK
                     QQSDSKASTVETTTTSSVMTSESSEVQTEIIWEQQTEPIKLPILMYHAIHVMAPEEEA
                     NANLIVDPTTFESHLKALQDAGYYTLSPEEAYKVLTENVLPAGKKVVWLTFDDSLWDF
                     YSYAYPLLKQYQMKATNNVITGFTEYGQAGYLTLDQIKEMQTAGLSFQGHTVNHPDLE
                     YSSIEDQTNELTSSKAYLDSQLNQETIAIAYPGGRYSADTVALTEQAGYKLGVTTNNG
                     LASASDGLLTLNRVRILPTTTAENLLAEIAY"
     gene            28087..29373
                     /locus_tag="U1396_000266"
     CDS             28087..29373
                     /locus_tag="U1396_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019782768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEM5341489.1"
                     /translation="MVVKIGLLGFGTVASGVPFLLEENQEKIEKAAHDSIEVAKVLVK
                     DEAEKDRLLAAGHDYHFVTNIDDILADEDIAIVVELMGRIEPAKTFITHALEAGKHIV
                     TANKDLLAVHGSELRALAEEKGLALYYEAAVAGGIPILRTLVNSLAADKVTRILGVLN
                     GTSNFMLTKMVDEGWTYEKALQTAQELGYAESDPTNDVEGIDAAYKAVILSQFAFGMT
                     VDFEHVAHKGISNITPEDVAVAQELGYVIKLVGDIQETTSGIAAEVSPTFLPKNHPLA
                     SVNGVMNAVFVESIGIGQSMYYGPGAGQKPTATSVMADIIRIVRRLKDNTIGKAFNEY
                     SRSLQLAAPSDVKSEYYFSIDAPDKNGKMLRLAEIFNSEEISFKQILQQAADGETARL
                     VIVTHEMSKTQLENVTDKLSKETDFTVLNTFKVLGE"
     gene            29377..30237
                     /locus_tag="U1396_000267"
     CDS             29377..30237
                     /locus_tag="U1396_000267"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEM5341490.1"
                     /translation="MKIIIPATSANIGPGFDSVGVALSKYLTIEVFEETDEWVIEHNL
                     EHVPSDKNNLLIKTALKIEKGLQPHRIRMISDIPLARGLGSSSSVIVAGIELANQLAG
                     LNMTADEKLLKATEIEGHPDNVAPAIFGNLVISSYVNKKVQAVVTEFPEASFVAFIPN
                     YPLRTVESRGVLPSQMGYKKAVAASAIANVAVASLMAGDLEKAGKAIQSDMFHEPFRQ
                     LLVKEFCPIKQTAQELGAYATYLSGAGPTVMVLAPKDREDAIVLALEELNLDGTVHRL
                     QVDTKGIAIV"
BASE COUNT         8650 a         5697 c         7043 g         8934 t
ORIGIN      
        1 tttaccaggc tttttcttat attcacaaaa ttttctgaat ttttaattga aaatcacttt
       61 caaaagtagt aaaataataa aaaatgaatt tggagaaact atatgacagt gaacattgac
      121 tgggaaaaac ttggtttttc ttatatgaaa ctaccttatc gcttcatcgc tcatttcaaa
      181 aacggccagt ggtctgaggg gcagctgacc gaagatgcag aacttcacat ttcagaaagc
      241 tccccagccc ttcactatgg ccagcaggcc ttcgagggcc ttaaagccta tcgcaccaag
      301 gagggaaagc tccaactttt ccgtccagac caaaacgctg agcgcctaca acggacagct
      361 gaccgcttgc tcatggagcc tgtaccgact gaccttttca tcaaggcttg taaagaggtg
      421 gtcaaagcca acgcagacta cgttcctccc tatggaacag gtggcaccct ttatctccgt
      481 ccgctcctga ttggcgtcgg cgacatcatc ggcgtaaaac cagcagaaga gtacattttc
      541 acagtttttg ccatgccagt tggcaactac ttcaagggtg gtttggctcc gaccaacttc
      601 ctcattcagg acaagtacga ccgtgcggca ccaaatggaa caggggcagc taaggttggt
      661 ggtaactacg cggcatcgct cttaccgggc caatatgcca aaaagcaggg cttctcagat
      721 gtcatctacc tggacccagc tacccacacc aagattgaag aagtagggtc tgctaatttc
      781 tttggtatca cagctgataa cgagtttgtc acaccgattt caccatcaat cttgccgtcc
      841 attaccaagt attctctctt gtatttggca gagcatcgtc tgggtatgaa ggctgtggag
      901 cgtgaagtcc ttgtcgaaga attagaccag tttgtcgaag caggggcttg cggaacagct
      961 gcagtcatct caccaattgg tggtatccag attgcagaca aactccatgt tctccatagt
     1021 gaaacagaag taggacctgt cactcgtaaa ttgtatgaag aattaacagg tatccagttt
     1081 ggtgatattg aagctcctga aggctggatt gtcgaagtag attaatttca gaaggcttgc
     1141 acttgcaagc tcttctcttt ttttgtagaa tagtaaaagt gaggtttgaa aatgagtaaa
     1201 aaagataaaa aaattgaaat tcagattgaa gatagcaaag ttcttgtcaa tagagaagag
     1261 ttccctggct accgccttgt tataggtaaa aaagtaattg gagaaattgc agaattggct
     1321 gaaaataact ttgcagttat taaaaacgga aataccgaaa gcttttacaa aaaattagaa
     1381 aaagcagtcg gaaatattat tgaaaattat aatttaagtc actaaaaggc ttgtaatagt
     1441 cgctatttta tgttagaata gtgactgtta gtgcacggag agatagcgaa gaggctaaac
     1501 gcggcggact gtaaatccgc tccttcgggt tcgggggttc gaatccctct ctctccattg
     1561 aacaggatac aatggacgtt aagaaatccg tatgaaaata ggaaactgac gtagtgtgct
     1621 aaacacacaa ggaagtttat cttttttact aggattttag tccgtgttca actaagatac
     1681 gagagatgtt ctggtttatt agaaatttct gtagaaaatt aggagactga cgctgaatgt
     1741 taacactcaa ggaaggctat ctattttcct aagaaattaa tctcgagttc aatttcttgt
     1801 gattagtaaa taaatgaatt gtatctattt tttggggtat cgccaagcgg taaggcaagg
     1861 gactttgact ccctcatgcg ttggttcgaa tccagctacc ccagtaaagg tactagatat
     1921 agtctagttc gtcaaagatg tctaattgtt gttgtccttg cgtgtgcctt aaataaaata
     1981 tattttatgt tgggtcgaaa gacctgattg tcggaggttt ttttataatg aacgaatttg
     2041 aagatttgtt gaacagtgta agcgaagtta cacctggtga tgtggtaact gcagaagtat
     2101 tgacagttga tgctggtcaa gcaaacgtag ctatctcagg tactggtgtt gaaggcgtat
     2161 tgactcttcg tgagttgact aacgaccgtg atgctgatat caacgacctt gtaaaagttg
     2221 gtgaaacact tgaattgtta gtacttcgcc aagttgttgg taaagataca gacactgtta
     2281 cttatcttgt atctaaaaaa cgtttggaag cacgtaaagc atgggacaag cttgttggtc
     2341 gtgaagaaga agttgttaca gttaaagtaa ctcgtgccgt taaaggtggt cttgcagttg
     2401 aatttgaagg tcttcgtggt ttcatcccag cttcaatgat cgacagccgt ttcactcgta
     2461 acactgaacg ttttgtaggt caagaatttg atgctaaaat caaagaagtt gatcctgctg
     2521 agaaccgttt catcttgtca cgtcgtgacg ttgttgaagc agaagctgca gctgcacgtg
     2581 cggaagtatt cggtaaattg gcagttggtg aagttgtaac tggtaaagtt gcacgtatca
     2641 caagcttcgg tgcattcatc gaccttggtg gtgtagatgg tttggtacac ttgactgaat
     2701 tgtctcacga gcgtaacgta tctcctaaat cagctgtaac agttggtgaa gaagttgaag
     2761 ttaaagttct tgcaatcgat gaagttgaag gtcgcgtatc attgtcattg aaagctacac
     2821 agcctggtcc atgggatggc gttgagcaaa aattggcagc tggtgatgta atcgaaggta
     2881 aagtaaaacg cttgactgac ttcggtgctt tcgttgaagt attgccaggt atcgatggtt
     2941 tggtacacat ttcacaaatt tcacacaaac gtgttgaaaa tccaaaagac gctttgtcag
     3001 taggtcaaga agtaactgtt aaagttcttg aagtgaacgc agctgatgag cgtgtatcac
     3061 tttctatcaa agctttggaa gagcgtccag cagcagttga aggtgaagaa aaagctgaaa
     3121 aacgtgctcc acgtccacgt cgtcaaaaac gtgaagaaaa acgtgattac gaattgccag
     3181 aaactcaatc tggattctca atggctgacc ttttcggtga cattgaattg taattcatat
     3241 aaaaacttgc cttgtgcaag tttttccttt ccacccttag tgtaatggat atcacgtaag
     3301 attccggttc ttgagatggg ggttcgattc cctcagggtg gactaaattg aaaagcctgc
     3361 attaacaggc ttttttgtta tattatatca aggaggttat gatatattac attttgaaaa
     3421 tgactataac aaaggtgccc atcccgcctt gctagaagcc ttagttgcaa gcaaccaaga
     3481 aggtttatct ggatatggca ctgataaata tactgaatct gctatcgaaa aaatcagact
     3541 tgctacggac tgtcctcatg cacaagttac gtttttagca ggtggcacgc agaccaatca
     3601 aattgtcatt tcgtctatgt tagcttccta tgaaggagtc attgcagcgg atactggtca
     3661 tattgcagtt catgaagcgg gggcaattga atttacaggc cataaggtgt tggccttacc
     3721 gcatacggat ggcaaacttg tcgcaagtga agttgagaac tatatttccg atttctacgc
     3781 agatgctaat catgctcaca tggttcatcc aggaatggtt tatatttccc acccgactga
     3841 atatggtaca atttatagca aaacagagct agaagatttg tccaaagttt gccaacagca
     3901 taatattccg ctctttttag acggtgctcg cttgggttat gggcttgctg ctcgtgaaac
     3961 ggatcttgat ttgaagacaa ttgcagagct gacagatgtt ttctacattg gtggtacaaa
     4021 actcggtgcc ttgatggggg aagctttggt atttacaaag aacaaccagc ctaagaattt
     4081 cgtatcgatt gtcaaacacc atggtgcctt gttggcgaaa ggaagagtga caggtgtcca
     4141 gtttgattgc ctatttactg atgacttgta tcttaaattg gggcgtcata ctatcgcaat
     4201 ggcagagcaa ctgacccaga ttttggaaga gaagggcttt caattctatc tcaaatcccc
     4261 gaccaatcag caatttgtta ttgttaagaa tgaagaattg actagattga cagaagctgg
     4321 aattgcctat ggcttctggg agaaatacga cgatagccac agtatcatcc gctttgcgac
     4381 cagctggtca actagtcaag cggatattga tgaattgata aatatattat agcaatcaaa
     4441 aaagaaaggg ttagcctttc tttttagttt gtaaataatg atagcgataa actgcataac
     4501 gttcaataag gctgtagcct attcctcctg cgattgcatg tacaatcagg gcaatgtgca
     4561 attctagtgg tgcttttata gtgataccaa atagaatacc gattacagtc catcctagta
     4621 tcacccacca taagtactta aatggagcat actgaccatc ctggtcttta acttcactgg
     4681 aaaccctgat tgaacaaccg gtcaatactc ccatggggag caatgaacga gtatcaaatg
     4741 gttctggtaa aaatgacgat aagccgaaga tttgtataag cgcaaaaatc agtagccaaa
     4801 cgaaaaccgg cgtttttaga atgacgtatt tcatattgca cacctcctga aattagtata
     4861 tcaaatccaa gaaagtaaaa caaatatttt tgtgctattg attagaagtc gtttcggatg
     4921 ccccactagt tacctctgta tcagtactgg tttctgtcct tgtctccgaa gcttgggtag
     4981 cagacgtttc tgtagacgag gaagaggcag tagactctac tgaagagctg gtctcggttt
     5041 gggttgagga tgttgtttcg gagcttgaac ttgttaaatc ttgtactcct gttaacggat
     5101 tgtcgcttga tgattggctg ggactactag tggcgctgga tgatgaaatg gtagtacttg
     5161 gagatgttga ggatgttgta ggttttgctg taaaggtgta gatagtgatg caggcagtga
     5221 taatccctaa aatagacccg ataaaggtta aatatttttg aaagttagtt aaaccagccg
     5281 gttttttatt tgtattctta cgtgtattca tgatgtacct ccacctttag tttaagatag
     5341 gaagtttaaa actatcttaa agattgccga aaggcatgaa aacatgataa aataggacta
     5401 ttgcaataaa aggaatataa aaaatgattt attttgataa tgcggcaacg acacaggtct
     5461 atccagaagt tctcaagacc tatacggaag tggcgacaaa aatctgggga aacccctcta
     5521 gcctccatag tctaggcagt caggcaaccc gtattttgga agcatctcgc aagcaaatcg
     5581 cagaattact aggcaaggat agcaaagaaa tctttttcac ctcaggtggt acggaaggtg
     5641 acaactgggt catcaaggga gtagcatttg aaaaggcaca tctgggcaag cacatcatcg
     5701 tgtcagctat tgagcatcca gcggtaaaag agtctgcact ttggctcaaa acgcaaggtt
     5761 ttgaggtgga tttggctccg gtcaatgccc aaggttttgt tgatgtttca gccttagaaa
     5821 gcttgattcg tccagatacc acactggttt ctatcatggc cgtcaataat gaaattggtg
     5881 ctattcagcc cattcaggaa atctcccagc tcttagctga taagccaacc atctccttcc
     5941 atgtggatgc agtgcaggca atcggcaagg tgccaacgga acggtatttg acagaccgag
     6001 ttgattttgc cagtttttca ggtcacaaat tccactctgt cagaggagta ggtttcgtct
     6061 atgtcaaagc tggcaagaaa atcgctccgc tattgacagg gggaggacag gaaagcgata
     6121 aacgctcaac aactgaaaat gtggctggta ttgcagcaac ggctaaggcg ctccgcttga
     6181 ccttggacaa ggcggtagat agccagaaga ggctggcggc tatgaagcag attttggtgg
     6241 atgaattggg caaatacgac gatgtgacag ttttttctgg gctagaggac tttgtgccaa
     6301 gcatcgtaac tttcgggatt aagaatattc gtggcgaggt cattgtccat gcctttgaag
     6361 accaccagat ttacatttcg acaacctcag cctgctcgtc taaggctgga aaaccagctg
     6421 gaacactgat tgccatgggt gttccgcaga agttggctca aactgccgtc cgtatcagct
     6481 tggatgatga caacgatatg gggcaaatcg aacaattcct cacgattttc aaacaaattt
     6541 atcaaaacac acagaaagta aggtagaatg aactattcag aaattatgat tcgctatggc
     6601 gaattgtcaa ctaaagggaa aaacaagatg cggtttatta acaaactccg caataatatc
     6661 aagcatgtcc tttctgttta cccagaagtg accgtttatt ttgaccgtga ccgtggtcat
     6721 gtctatttga atggggcgga ttatcaggaa gtttcagctt cattgaagaa gatttttggg
     6781 atccaaaatt tcgcaccgtc ttataagatt gaaaagtctg ttccagcttt gaaagaagcg
     6841 gttgtggaaa taatgcagtc catttacaag gaagggatga ccttcaagat tgctgcgcgt
     6901 cgtagtgacc acaattttga attggacagc cgtgacctta accaagtcct tggagatgca
     6961 gtttttacag ctattccaaa tgtacaggta cagatgaagt caccagatat taccttacga
     7021 gtggaaatcc gtcctgatgc tgcttatatt tcccatgaag aaatcaaggg ggcaggcggt
     7081 ctgccagttg gtacatctgg caagggtacg ctgatgctat caggtggtat tgattcgcct
     7141 gttgcgggct atttagcact gaaacgtggg gttgaaatcg aagccctgca ctttgcaagt
     7201 ccgccttata ctagcccggg tgcacttaaa aaggcccatg atttgactcg taaattgact
     7261 gcctttggtg gtaatatcac ctttatcgaa gtgccgttta cagaaattca ggaagaaatc
     7321 aaggaaaagg cacctgaagc ttatttgatg accttgacac gccgcttcat gatgcggatt
     7381 acagaccgag tacgggaaga gcgtggtgct atggttatta tcaatggtga aagtctagga
     7441 caagtggcaa gtcagacctt ggaatccatg caggctatca atgcggtgac aaatacacct
     7501 gttatccgtc cagtcgttac tatggacaag ttggaaatca ttgatattgc tcaagaaatt
     7561 gatacctttg atatttccat tcagccattt gaggattgct gtaccatctt tgctcctgac
     7621 cgtccaaaaa ccaaccctaa aatcaaaaat gtcgagcaat acgaggctcg tatggatgtt
     7681 gaaggcttgg tggaacgagc tgtggctggg attatcgtaa ctgaaatcac accgaaagaa
     7741 gaagtgaaag acgaagtgga tagtttaatt gaagacttac tgtagaattc aattgttttg
     7801 gcatacattt aaatccagct attgctggat tttttaatac gaatcgttcg gaaaaatcga
     7861 atttgtatga tataataaga cttcagaaaa aaacaaagga gttattatga aaaaaggagc
     7921 actaacagga ttactcctgt ttggtatgtt ttttggtgca ggaaacttga ttttcccacc
     7981 tgcacttggt gtcttatctg gtgagaattt ctggcctgct attttaggat ttgtcgtttc
     8041 gggtgtcggt attgcagtca ttgccctgat cgtcggtacc ttaaacccaa aaggttatgt
     8101 acatgagatt tctcgcaaga tttcaccgac ttttgcaacg atttatcttg ttgccttgta
     8161 tttggctatc ggtcctttct ttgccattcc gcgtacagca acaacgtcct ttgaaattgg
     8221 tattgcgcca ttgttgggcg aagcaaacct tggaatttgg ttgttcggct ttacagctct
     8281 ttactttgtg gcagcctacc tgattgccct caatccatct caaatcttaa atagtatcgg
     8341 acgtatttta acccctgttt ttgcgatttt gattgtgatt ttggttgtgc tgggtatctt
     8401 caagtatggt tcgactagtc cactaccagc agcagaagcc tattcagctg gacaggcatt
     8461 tggtacagga tttattgaag gatacaacac ccttgatgcc cttgcctcaa ttgcctttag
     8521 tgttgtagcg gtgaatacct taaaacacct tggtttctcc agcaaaaagg aatatgtatc
     8581 taccatttgg tcagttggtc ttgttgtagc cttagctttc tcagcactat atgtcggttt
     8641 ggcatttctt ggaaatcatt tcccggtacc tgctgatgtc ttggcgtccg ataccaataa
     8701 gggtgtttat attctttcgc aagcaacaca ggctattttt ggaccaggtg cacaaatttt
     8761 cttagctgcc atggttatcg ttacttgctt tacgacaacg gctggcttga ttgtttcttc
     8821 aggtgaattt ttcgctgagc gtttcccacg ttttagctac aaagtatatg cgacaatttt
     8881 tactttgatt ggctttggga ttgccaacct cggtttgaac aatatcatca ccttctcagt
     8941 tccagttctt ttggttctct atccaattac tatctgtatt gtcttgattg ccattgttaa
     9001 caaatttgta ccgctttcca cttatggtat gcaattaact gtgggagtag tgacagcttt
     9061 gtcattggta gaagtgttag caggacaatt caactggact gctatttcaa aaatcatctc
     9121 agctctgcca ttggcaggac aatcattagc atggttatta ccagctcttg tcggaatcgt
     9181 cctctctcta ttcttaccaa acaagcagga gagcgaagtt ttcgaaatgt aagaaaaatg
     9241 atacaaaaca cttgcatttg caggtgtttt tgttataata ggactgttga ctatgcacac
     9301 atcctgtgca accgcacgaa tgccgttctt tcgttgagag tagagtaagt ggttcgtccc
     9361 acggtactag gcgagtcttc acatcaaatt cgggcaagac ccaaaaatca taggaggtgc
     9421 ataatgagca catatgcaat cattaaaact ggcggcaaac aagttaaagt tgaagtcggt
     9481 caagctatct acgttgaaaa attgaacgtt gaagcaggtc aagaagttac tttcgaagaa
     9541 gtagttcttg ttggtggtga gaaaactgtt gtgggtactc cactcgtagc aggcgctact
     9601 gttgttggta ctgttgaaaa acaaggtaaa cagaaaaaag ttgttacctt caagtacaaa
     9661 cctaaaaaag gtagccaccg caaacaaggt caccgtcaac cttacacaaa agttgttatc
     9721 aacgctatca acgcttaatc gcgtagcttg aagcaatcat tacagaaatt cggaggaata
     9781 acatatgtta aacttgaatc ttgctaactt gcaatttatg gcccacaaaa aaggtggagg
     9841 ttcaacgtca aacggtcgtg attcacaagc gaaacgcctt ggtgcgaaag ctgctgacgg
     9901 ccaaactgta tcaggtggtt caatccttta ccgccaacgt ggtacaaaaa tctacccagg
     9961 agctaacgta ggtcgtggtg gagatgacac tctttacgct aaagtagaag gcgttgtacg
    10021 cttcgaacgt aaaggtcgcg ataagaaaca agtatctgtt tacccaatcg caaaataagt
    10081 ctgaaaatgg ctttacaata ggctttccga gttgttttcg gagagtcttt tttgtaattt
    10141 gattttgcta tttttaaaag tgtacgatag aagtgattta agacggcaat atcttctcta
    10201 taggataaaa atattttgcc atctgcactg ttgcgctgcc tataagttct acgttcagta
    10261 gtagatgaaa tgttcagagg aagtggtatg ggttccaact tagtaaaatt agtcattgat
    10321 gatttggcga acagaaattc caaagccttt caaattgcag ttgaagaaga ggatttggga
    10381 acctggaagt tatataagag aagaatagtc tatttgtgaa aacgcaagag ttcagcaaat
    10441 tcttgctttt tttgatataa tggtagaagc agttttaaga ggtatcaggt atgaatattc
    10501 aacaattacg ctacgttgta gccattgcca acagtggtac ttttcgggaa gcagcagaga
    10561 aaatgtacgt ttcccagcct agtttgtcca tttccattcg tgatttggaa aaagagttag
    10621 gttttcaaat ttttagccga actagttcag gaactttttt gacacaaaaa gggatggaat
    10681 tctatgagaa agctcaggct ttagttaagg gatttgatca gtttgagcat ctctatttgc
    10741 aacctgagga aggtgagaag actttttcaa tttcaagtca gcattatgat tttcttcccc
    10801 cgttgattac ggagttctct cgtagccacc cgcagtaccc tcattttcgc atttttgaat
    10861 cgactacagt acagatttta gatgaggttg ctcaaggtta tagcgagctt ggtattattt
    10921 atttgaacga gagaaataca aaaggaatca tgcagaaatt ggataaactt cacttgcaag
    10981 ctgtggattt gtctgcattt cagactcata tctaccttcg tgaagatcat cctttgacaa
    11041 agaaagctga ggttgatccg gcagatttgg taggtctacc taccgtacgg ttcactcaag
    11101 aaaaagaggc ttatctttat tattccgaga acttgattga tacgtcggat tcctcggttg
    11161 tgtttgatgt gacagaccgt gcgactttga atggaatttt ggagcgtacg gatgcctatg
    11221 caactggttc gggctatctt gatgacgaga gtgtcaatgg cattaccgta attcctctca
    11281 aaggaaaggt agacaatcgc atggtctacg ttaaacgagc taatgatgaa cttagttctt
    11341 gtgccaaaga ctttattgaa accatgcagg catattttga taagaagaag gatgaaaatg
    11401 cgtaaaattg gatttccatt tttgatggta gtattaattg gtttggacca gtttgtaaaa
    11461 gcttggacag ttgccaatat tgaattagac acggttgagc cacttcttcc gggggttata
    11521 agtttggcct atttacgaaa ttatggtgca gcctggtcca tcttacaaaa tcagcagtgg
    11581 tttttcacga taatgacaat tgttgctgtg acaggcctag tgtggtacta tatcaaacag
    11641 atcaagggca atatctggac tttattcagt ctgtctttga tgattgctgg tgctcttggg
    11701 aattttattg atcgtcttag attgggatat gtggtggaca tgtttcactt ggatttcatt
    11761 agtttccctg tatttaatgt agcagatgtt tgtctgacag ttggtgtagg tattttattt
    11821 atttgtatta tgaaagaaga gagtaatgga agtaagagtt gaggttggtg gtattcgttt
    11881 ggataaggca ttgtcggatt tgacggattt gtctcgttcg gttgcaaatg agcagattaa
    11941 ggctggtcag attttggtca atggacagcc taaaaaagct aaatatagtg tgcaggttgg
    12001 ggatgtccta acctatcaaa ttccagaagt agaagaaatc gactatgttg ctgaggatat
    12061 tcctttagag attgtctttc aggacgagga tgttgctgtt gtaaataaac cacaagggat
    12121 ggtcgttcat ccgtcggctg gtcacacgtc tgggacgcta gttaatgctc tcctttatca
    12181 cgtaaaagat ttgtcaggca tcaatggtgt cttgcgacca ggtattgtcc atcggattga
    12241 caaggacaca tctggcttgc tcatgattgc taaaaacgat gatgcccata caaagcttgc
    12301 tgctgaattg aaagataaga aatcccttcg taagtattgg gccattgtac acggcaatct
    12361 accaaacgat cgcggagtaa ttgaggcgcc gattggtcgt tctgaaaaag accgcaagaa
    12421 acaagcggtg actgccaaag ggaaagaagc ggtgacacgt tttcaggttt tggagcgttt
    12481 tggtgactac actttggtgg aattgacctt ggaaacagga cgaactcacc aaattcgtgt
    12541 ccacatggct tatattggtc atccggttgc gggtgatgaa gcttacggcc caaggaaaac
    12601 actaaaaggg catggccaat ttcttcatgc cagaacgctt ggatttaccc atccgagaac
    12661 tggtgaggtt gttgaattta cggcagaagc gccagctatt tttcaggagg cacttgaaaa
    12721 actgcgcaag gctgaataat agtatgaaaa ccttatcatc ttgcccattt tttcaacaaa
    12781 tgctatacta gaacatgaaa aatgttaagg agagtaagaa tggaaacttt accaaattgt
    12841 ccaaaatgta attctgaata tgtctatgaa gacggtgccc tcttggtttg ccctgagtgt
    12901 gcatacgaat ggaacccagc agatgtagct gaggaagaaa gtggacctgt tgcaattgat
    12961 gctaacggta atcgtttggc ggacggcgat actgtgacgc ttatcaaaga cttgaaagtg
    13021 aaaggtgcgc ctaaggacct taaacaaggt acacgtgtta aaggcatccg tatcgttgaa
    13081 ggcgatcaca atattgattg taaaatcgat ggttttggtg ccatgaagtt gaaatctgaa
    13141 tttgttaaga aaatctaaga gagaggactg gttaaccagt cttttcctgt ttttgaaagg
    13201 atattatgaa acatcaaagt attttgtttt acagtagatg cctgttagcc attttagcca
    13261 tcacaggtac cgccttagaa atcattaaat atggtatcgg gatgctcatg tattatacgg
    13321 tacaatctaa tttattagta tctctgttcg ctgtctatat ggtctatgcc atgagtaagg
    13381 gtgtggattt acagacgtca cattttcttc ggataaaggc tgctgtaacc atgtctatca
    13441 tgattacctg tgtagtctat cactttatgt tggcaccttt ggcagacgat ttctggcgac
    13501 ttgaaaatct gctctgccat tatattgttc ccttatattt tttgttagat accctaatag
    13561 tagatcgtca gcaacagtac aagtggtttg acccgatttg gtggacgctt ctgcctgttc
    13621 tctacatgat ttttggtcta gtgaatggtc ttttcataaa aattccaatc ccagatgcta
    13681 aggacagtcc ttttgcttat ttctttctca atgtccctaa gtatggttgg acctatgttt
    13741 tgacttatgc tggagtcatc tttgtcgcct atctagtctg cggttttcta ttggcgggac
    13801 taaaatccat aaaccttaag acttcattgt cttttggaaa aaattctcag taaaatccga
    13861 taatttctat attttttcag aaaaaaattg tcaaggctga gattttatgc tatactctgc
    13921 ttaataaatc ctttaaaacc tgtccagaga ggcagacaag gagtcggatg ttaagcaggt
    13981 tggttctaac tagcctatat tttcatagtc tccttgtata aggagacttt ttctatactt
    14041 ttggaggtct tatgaagaca aaagaaatcg ttgacgatat gactatgaaa cgggcaatca
    14101 cccgcatcac ttatgaaatt atcgaacgga ataagaattt ggataatatt gtccttgcag
    14161 ggattaaaac acggggtgtt ttcattgcaa agaggattca ggagagactt aagcaattag
    14221 agggtatcga cgttccgttg ggagagttgg ataccaagcc gtttcgagat gacatgaagg
    14281 tagaagatga tacgacaaat atgactgcca atgtcaatga tcgtgatgta atattagtag
    14341 atgatgtgct ttatacagga cgaactattc gtgctgctat tgacaacata gtgtccttgg
    14401 gccgtccagc tcgtgttagt ttagcggcac ttgtggatcg tggacacagg gagttgccta
    14461 ttcgagcaga ttatgttggt aagaatatcc caactagccg ttctgaagaa atcattgtgc
    14521 acatggctga aatcgatggt caagacgctg tccttctggt tgaaggtgca tagtcgcttc
    14581 gtttacaaat tctcattcta catctagatc ataaaggtag gtatcatcat gacaattaca
    14641 aatggtaaag tttcactcaa acacttggtt acaatggaga ccctctcaaa tgaagaagta
    14701 ttgggactca ttcaacgtgg tattgctttt aaacgcggtg aaaaggtaga gttggatcgg
    14761 aagtactatg cttctaacct tttctttgag gattcaactc ggacgcataa gtcttttgaa
    14821 atggcagagc ttcgtttgga tatgggaatg attgactttg atgctcgtac cagctcagtc
    14881 aataagggtg aaaccttgta tgataccatt ttgaccatgt cagcacttgg ggtagacatc
    14941 tgcgtgattc gtcactcgga agtggattat tacaagcaat tgattgatag tcctaccatt
    15001 cagacttcaa ttgtcaatgg tggtgatggt tcaggtcaac acccaagcca atccctactt
    15061 gatttgatga ctatttatga agaatttgga acttttgaag gcttgaagat tgccattgca
    15121 ggtgatatta cacactcacg ggttgctaag tccaatatgc aaattttgaa acgtctggga
    15181 gctgagattt tctttgctgg accggaggaa tggtacgcag aggaatttga tgtctatggt
    15241 cagcatttga atattgatga tattgtggaa acggtagatg tactgatgtt gctccgtgtg
    15301 caacacgagc gtcatgatgg tgatggtggc ttttctaaag aaacttataa ccgtttgcat
    15361 ggtttaacag aggagcgcta caaacgcttg aaagatactg caattgttat gcatccggct
    15421 cctgttaacc gtgatgttga gattgatgat tctctagttg aagcacccaa atcacgtatt
    15481 gtccgtcaaa tgcagaatgg tgtatttgtc cggatggcga ttttggaagc aattgtcaat
    15541 ggcaaggctt aaaagtaagc tgttcagata ccttagaact gagcagttag aaatttgtta
    15601 gacttatctt atttaatgtc gcccagagag gcgacgaata gaaaggagaa ggtacaggtt
    15661 cgagtaagat ttgattttta tattcgaaca cgccctaagg actgtgtgaa aaagataaat
    15721 atcgacttga cgcctatagc gtcggcgccg aatttcctat tttcactttg tccttttaac
    15781 gggctttgta tcatagatta tgtcaaaaag acgtttaatt ttggaaaatg gcactatttt
    15841 tgagggggag gccttcggtg ctgatattga tgtgactggt gagttggttt tctcaactgg
    15901 gatgacaggt tatcaggaat ccatcacgga ccagtcttat aatggtcaga ttttaacctt
    15961 tacctatccc ttggtaggaa attacgggat taaccgtgat gatttcgagt cgatcaaacc
    16021 gacttgtaag ggagtggttg ttagcgagtg ggctcgtcga gcaagtaatt ggcgtaacca
    16081 gatgactttg gatgaatttt taaaggctaa gaaaattcca gcaatttctg gaattgacac
    16141 acgcgcccta actaaaatta ttcgtcagca cgggaccatg aaggcgacat tggcaaatgt
    16201 tggtgattcc gttgagcatt tgacagacca gttgagagcg actgttttgc caaccaacaa
    16261 catccagcaa gtatcgacaa aaacagccta tcctgcacct ggagttggac gtagtgttgt
    16321 tttggttgat tttggattga aacattctat tcttagagag ttagccaagc gtgattgcaa
    16381 tgtgacagtt gtcccttatg atacgactgc tgaagaaatt cttgccctca atccagacgg
    16441 tgtcgtgctt tcaaacggtc ctggtaaccc agatgatgtt ccagaagctt tggacatgat
    16501 tcggggcatt ctcggaaaaa ttccaatttt tggtatctgt atggggcacc aactctttgc
    16561 taaagcaaat ggggcaacga cttataaaat gaagtttggt caccgtggtt tcaaccatgc
    16621 tgttcgtgaa attgcgacag gtcgagtgga ctttaccagt cagaaccacg gttatgcagt
    16681 ggctcgtgaa gatttacctg aatgtttaat gattactcat gaagaaatca atgacaaatc
    16741 agtagaaggg gtacgccaca agtactatcc aggtttctct gttcaattcc acccagatgc
    16801 tgcacctggt ccacatgatg ccagctattt gtttgacgaa tttatggaat tgatggattc
    16861 gtttaaaaaa gggcagtaag gtttaactaa tatcgtgcta aactttactg cgtcggtcag
    16921 agcaagtcgg acttcatgtt aacgcatgtg tcttcctacg caaagtccaa tgggaccttt
    16981 gctaactctg acactagttt agaatttcaa ttattatcga attgggattc taaacgtcgg
    17041 acttatctta tttaatgtcg ctcagagagg cgacgaatag aaaggcaagg gacagatcaa
    17101 tggttgcgag caactcattt ccctacgcct gggagtggga aagaactcga aaagtaaaaa
    17161 agagttcgtc aacaagtcct tgtttccagt tgttgagctg aaacaatcta tccccagatt
    17221 gtttcactcc cacccccgca cagctcaaac tgtctcccag acagtttgag gttggaaata
    17281 gagcgaactt tgttcgcaac agtcgtaatg gtcagatttg gagtatagaa tacgaacaaa
    17341 tttaccaatc aaccactgcg ctgagatggt gacacctgct cttagaaatg gtgatatact
    17401 ttaaggctat cccttgcact agtttgaaaa ctaaagtaat atcgacttta gttttcaaac
    17461 gtcggactta tcttatttaa tgtcgctcag agaggcgacg aatagaaagg caagggacag
    17521 atcaatggtt gcgagcaact catttcccta cgcctgcctc tatggaggtc aggctatccc
    17581 ttgcactagc tcgaaaatgg attaatgtcg aatccatttt ctcacgtcgg acaattattt
    17641 aattctatcc ggagagatag aaaatagaaa ggagagatac aggttcgagt ttcctattcg
    17701 aacacgccct aaggactgtg cgaaaaagat aaatgtcgtc ttgatgcttg aagcatcagt
    17761 gtcgtgtttc ctattttcgc tttgtcctct taacgggctt tgtatcatac attatgccaa
    17821 aacgtacgga tattaagaaa ataatggtga ttgggtctgg tccgattgtg attggtcagg
    17881 ctgcggagtt tgattatgct gggactcagg cttgtttagc cttgaaggaa gaaggttaca
    17941 gtgtggtctt ggtcaattca aaccctgcga ccattatgac agacaaggaa atagcagaca
    18001 aggtttatat tgagccaatt acgcttgaat ttgtcacacg gattttacgg aaggagcgtc
    18061 cagatgctct cttgccaact cttggtggtc agactggtct caacatggcc atggaattgt
    18121 ctaaggctgg tattttagat gagcttggag ttgagttgtt gggaactaaa ctgtctgcaa
    18181 ttgatcaggc agaggaccgc gacctcttca aacaactcat ggaagatctc aatcagccta
    18241 ttcctgagtc aacgattgtg acaacagttg atgaggcttt ggaatttgct gctgaaattg
    18301 gctatcctgt cattgttcga ccagccttca cgctgggtgg tactggcggt ggtatgtgtg
    18361 ccaatgaaga agaactacgt gaaatagcag aaaatggtct aaaattgtca ccagtgactc
    18421 agtgtttgat tgagcgttcc attgctggtt tcaaagaaat tgaatacgaa gtgatgcggg
    18481 atgcggctga caatgccttg gtcgtatgta acatggaaaa ctttgaccct gtgggaattc
    18541 atacaggaga ttctatcgta tttgccccaa cgcagacgct ttcggatatt gaaaaccaga
    18601 tgttgcgtga tgccagtctc agcattattc gtgctctcaa aatcgagggt gggtgtaatg
    18661 tgcagttggc tttggattct catagcttca aatactatgt catcgaagtc aatcctcgtg
    18721 tatcgcgttc ctctgccttg gcatccaaag cgacaggtta tcctattgcc aaattggcag
    18781 caaaaattgc ggttggcttg accttggatg aaatggtgaa ccctgttaca ggaacaacct
    18841 atgccatgtt tgagcctgct cttgactacg ttgtggcaaa aattccacgt ttcccatttg
    18901 ataagtttga aaaaggggag cgtcgccttg gaacgcagat gaaggcaact ggagaggtca
    18961 tggccattgg gcgtaatatc gaagaaagtc tgctcaaggc ctgccgttct ttggaaatcg
    19021 gggtatacca caatgaaatg cctgaactca gccaagtgac agatgaccaa ttggttgaaa
    19081 agattgtcaa ggcacaggat gatcgtttat tctatctttc agaagccctt cgacgtggtt
    19141 atacagtaga agaactagct caattgacga agattgatct tttcttcctt gataagctgc
    19201 ttcatatctt agaaatcgag caggaattgg caacgaattt tgataatatt gatttattga
    19261 aaaaagccaa gaaatacggt tttgcagacc gcaagattgc ggaactctgg ggacggacag
    19321 aatcctacat tcgtcaactg cggacagaac acaagattgt ccctgtttac aagatggtag
    19381 atacttgtgc ggctgagttt gaaagtgcta caccttattt ctattcaact tatgagtggg
    19441 aaaatgagtc catccgttcg gagaaagaat ctgttttggt gctgggttct ggtccaattc
    19501 gtatcggaca gggtgtggag tttgactatg cgacggtaca ttctgtcaag gccattcagg
    19561 cagctggcta cgaagccatc attatgaact caaaccctga aactgtgtca actgactttt
    19621 cggtttcgga caagctttac ttcgagccgt taaccttgga agatgttttg aatgtgatcg
    19681 accttgagaa accaaaaggg gttatcgttc agttcggtgg ccagacggct atcaatttgg
    19741 cagagccatt ggccaaagca ggtattccaa tcttgggtac gcaagtagcg gatttggata
    19801 gagctgaaga cagggattta tttgaaaaag ccctgaaaga cctaggaatt ccacagccac
    19861 caggtcaaac cgcaaccaac gaagaggaag ctcttgaagc ggcccgcaaa attggtttcc
    19921 cggtacttgt tcgtccctct tatgtcttgg gcggtcgtgc tatggagatt gtcgaaaatg
    19981 aagaggactt acgttcttat atgagaactg cggtcaaggc ttcgccagag cacccagttt
    20041 tggtggattc ttacatcgtc ggtcgtgagt gtgaagtgga tgctatttca gatggtaagg
    20101 atgtcttgat tccaggtatt atggagcata tcgagcgcgc tggggttcac tcaggtgact
    20161 cgatggccgt ttacccgcca caaaccttgt ccaaagaagt gcaggcaacc attgcagact
    20221 acaccaaacg cttggcaatc ggtctcgact gtatcggtat gatgaatatc cagtttgtca
    20281 tcaaggatga aacggtctat gtgattgagg tcaatccgcg tgccagtcgt acggtgccat
    20341 tcttgtccaa agtcacagac attccaatgg ctcaggttgc aaccaaattg attttgggac
    20401 aaagccttgc ggaacttggc taccaagacg gtctttatcc tgagagcaac caagtgcacg
    20461 tcaaggcacc ggtcttctcg ttcacgaaac tagctaaagt tgacagtttg ttaggaccag
    20521 agatgaagtc aaccggtgag attatggggt cagacttgac actggaaaaa gcgctttata
    20581 aggctttcga ggcaagttat cagcacctgg ctgagtttgg caacgttgtc tttaccattg
    20641 cggatgaaga caaggaagaa gtgcttggtc tggctcaacg tttctatgaa cttggttatg
    20701 gcctactggc tacggcagga acagccgcct ttctaacaga aaatggactt gctgtaacaa
    20761 ctgttggtaa attaggcgat gattcccgtc cagatattcc tagtcttgtt cgggcaggta
    20821 aggttcaggc tattatcaat acggttggga aaaaacgggt ggcagatggt gacggtcaag
    20881 tcattcgaag ctctgctatt gaaggaggaa ttccgctctt tacggccctc gatacagcag
    20941 aagctatggt caaagtgctg gagagccgta gcttcatgac acaggctata tagaagatac
    21001 tatcaggatg agctttgagt tcgtcctgat tttttgatat actgaagagt atgaaaatga
    21061 ttgtaacaac tagtcttggg atggatgagg ggctggtcta tagggctaga cggattgcca
    21121 gtgaactggg aattgaatac aaggaaagaa agaagcagtc ggttggaaaa atgttaggta
    21181 cctacgaggc tgtcttggtt ctttataagg ataaattgat actagagcag aggggtgggc
    21241 aggttttatt tttccaccca gatactgcca tgttgcggat taagtctgga agagatccgc
    21301 ttttagaatt acttggaaaa gaaaaacaat caataataga ctgtactatg agcttgggat
    21361 ctgatagcat tgtgttagca agtgccggtc atcgggtaac agccttggaa agttctaagc
    21421 tagtgcactt tattgtgagt cgaggtttac aggattttga tagtgggctg caagaggtca
    21481 atcgagccat gaaatctatc cagacaattt ggacagatag tttgacttat ttgaaagagc
    21541 aaaaagataa gtctgttgat gtcatttact ttgatcccat gttttcggaa gaaatcaagg
    21601 aatcacaaaa tctttctggc ttgtctactt tggctgacag aagtcgttta acggaggaaa
    21661 ttgtatctga ggctaaacga gtagctagga agaaattgat tataaaggct cattttcgag
    21721 atcaggtctt tgaagaattt ggctttaaac gtcatgtcag acccaatcaa aaatttcact
    21781 acggagaaat tattttggag gaggaagtat gaaaatcatc gtaacaggct ttgatccctt
    21841 tggtggcgag tctattaacc cagccttgga aacaatcaaa tctctaccta agaccattgc
    21901 tggtgcagag attattcttg tagagattcc gactgttttt gacaaggctg cggatgtttt
    21961 agaggagaaa atggcagaac atttacctga tgcggtacta tgtattggtc aggctggtgg
    22021 gcgagttgat ttaactcctg agcgtatagc cattaaccaa gatgatgcac gcattccaga
    22081 caatgaaggg cagcggccga ttgatagaac gattcgagaa gatggtcagc ctgcttattt
    22141 ctccacctta cccatcaaag caatggttga agctattcat aggattgggc ttccagcttc
    22201 tgtttctaat actgctggga cctttgtctg caatcatctc atgtatcaag ctctttactt
    22261 ggcggagaaa caatttccaa agactaaggc aggctttctc catattccct tcttgccaga
    22321 gcaggttgtc gacaagcctg gactagcttc catgtctttg aacgatattg taagaggagt
    22381 tgaagtagct ataggagcga ttgttgaata tagggataaa gaggatatta aaaagggtgg
    22441 tggcagtaca cactgatgaa aaatattatg gaagcaagaa aacgtgtaga ggaaatggaa
    22501 aaaatattta acagacagct agagctgaac cagtcccttt ccgataatat ggcacaactt
    22561 aaccaggaac aatcgactta tttacaatta ttagattatt accagagcca gacctatatg
    22621 gaagatcttg atttatctaa taagggttat ttcaatggta ttccttgcgg agtattgagt
    22681 gaagatggag tctataattt actgtttgac cgtacaaatc tagcaagtca actgagagaa
    22741 ctagcagata tgctcgaaca ataaattttt ttaaaacctg tcaagttttt ttcttgacac
    22801 cctgtcaaag tgtggtataa tagaacatgt gctaaatagc tctgctattt caccgaataa
    22861 aaatacaaag aaaagagaac atttaaaaat ggcagtaaaa atccgtttga ctcgtatggg
    22921 ttctaaaaag aaacctttct accgtatcaa cgttgcagac tcacgtgcac cacgtgatgg
    22981 tcgtttcatc gaaactgttg gtacttacaa cccacttttg gctgaaaact cagtaactct
    23041 taaagaagag cgtgtacttg agtggttggc aaaaggtgca caaccatctg atacagttcg
    23101 tagccttctt tcaaacgctg gcgtattgaa gaaattccac gaacaaaaat tctctaagta
    23161 agaacagtaa gcgagaacac ttatggacat gattgaaaat ctcattattg cgattgtgaa
    23221 acctttgatt tcacagcctg atagcttgac aataaaaatt gttgatacac ctgaattctt
    23281 ggaatatcat ttggatttgg atcaatctga tattggacgt atcattggta gaaaaggacg
    23341 cacaatttct gcaatcagaa cgattgtcta ttctgttcca acaagtgata aaaaagttcg
    23401 tttagtgatc gacgagaaag aatagaaagt caccgtttgg tggcttttaa cgttgacaaa
    23461 ggggcctagc ccctttttaa catatagaaa ggaagaaatg atgaatctga tttggaccta
    23521 tttgaaaaaa tattctaagt ggattgcctt agacttgttg ggggccttct tatttgtagt
    23581 ggtaaactta ggcttgccga cttttttggc taggatgatt gaccaaggaa ttacaaagaa
    23641 cgatgttagt cagctctatt tctgggcggg gatgatggga ttgattgtcc tgctcgggat
    23701 tgttggtcga gtgacacttg cctatgcagc tggaaaattg actaccaata tcgtcaaaga
    23761 tattcgaaat gatctgtatg agaaaattca ggactattct catcatgaat atgagcagat
    23821 tggtgtttct tctctagttg ctcgtatgac aaatgatgct tttgttctca tgcaattctc
    23881 tgaaatggtc ttgaaactag gtattattac acccttgatg atgattgctt ctgtcattat
    23941 gaccttggta accagtccga gcttggcttg gacagtagca gtagccatgc cgtttctagt
    24001 ttttgttatt ttctatgtgg caacaaaaac tcgtcctctc tctgaaaaac aacagaaacg
    24061 attggatact atcaaccagt atgttcgtga aaatctcatg ggtttgcggg tcattcgtgc
    24121 ctttacacgt gaagagttcc aagaaaatcg ttttgcagag gtcaatgagg aatataccga
    24181 tatttccaaa aagctcttta atctgactgg attgacagag cctctctttg tccagattat
    24241 cattgctatg attgtggcca ttgtctggtt tgctttggat cccttgaaaa caggcagtct
    24301 acaaatcggt gatttagtag cctttatcga atatagtttc cacgcgcttt tctctttctt
    24361 gctctttgct aacttgttta acatgtatcc acgtatgtcg gtatcgagcc aacgaattca
    24421 gaaagtcttg gacatgccca tttccatttc taagaatgaa gaaggtatta ctaaatcaga
    24481 tactcgtggt tatttggaat ttgaaaatgt aacttttgcc tatcctggtg aaacggaatc
    24541 gcctgttctc cacaatattt catttaaggc taagcctggt gaaacgattg cctttattgg
    24601 ttcaacaggt tctggtaagt cttccttggt caacttgatt ccacgtttct atgatgtgac
    24661 acttggtcgt atcttggtgg atggtgtgga tgtcagacgc tacaatctga aggcactccg
    24721 cagcaagatt ggctttattc cacagaaagc tctgctattt accggaacta tcgcggaaaa
    24781 cttaaagtac ggtaagatgg atgctagtct tgctggactt catgatgcga cagatgtggc
    24841 tcaggctaag gagtttatcg agagtaagga agaaaaattc gacacccact tggctgaggg
    24901 cggaagcaac ctgtcaggcg ggcaaaagca acgtttgtcc attgcacgtg ctattgtcaa
    24961 gcagccggat atttacattt ttgatgattc tttctcagcc ttggattata agacggatgc
    25021 aattttgcgg agtcgtttga aggaagtgac ggaaaatgcg acggtgctaa ttgtggctca
    25081 acgtgtcgga accattatgg atgctgacca gattatcgtg ctgaacgaag gtgaaatcgt
    25141 tggccgcggc acccacaatg aattgatgga aagcaatgag atttaccgag aaattgccaa
    25201 ctctcaactt aaccgtcaat cgttaacaga agaataggag gaattatgaa gaatagatca
    25261 gtatttaccc gtgtttggga ctatttgcgt cgttaccaat cttctgtatt tttagccatt
    25321 tttctaaaga ccatcagtgc agttatgaat gccttagaac cctttgtgct ggggcttatc
    25381 attacagaat tgaccaagaa tttgttggat attgctaatg gagtagaagg agcgcagatt
    25441 aactattcct acattgccat catgcttgcc atctatgccc ttcgcgccct tctatatgaa
    25501 atcggtgcct acggttctaa ctattttatg accaaggcag tgcagggagc aactaaggaa
    25561 ctacgtcagg atttgagcca caaaattaac aagattccag tatcttattt tgacaagcac
    25621 cagtatggtg atttactcgg acgttttaca agcgatgtgg agactgtttc aaacgccctg
    25681 caacaaagtt ttctccagct agtcaatgcc gttctgaccc tctctctagc cattttcatg
    25741 tgtttctggt tggatgtatc cctagcactt gtagtcataa ccttggttcc agtgacctat
    25801 tttggttcta agtttgtcat gggcaaatcc cagccatatt tcaagcagca ggctgatgcc
    25861 ctaggtcgtt tgaacggctt tgtccaagaa aatctgactg gttttaacgt tctcaaactc
    25921 tacggccgtg aagaaatttc tacagaagag tttcgccaga ttaccgcaga tttgcaggaa
    25981 gttggtttca aggctagttt catgtctggt ttgctcatgc ctctagttca cggcttctca
    26041 aacatcgcct acgttgtcgt cgccctgcta tctggattga aagttcttgc aggtacattg
    26101 acggtgggta atatgcaggc cttcgtccaa tacgtctggc agatttctca gccagtccaa
    26161 accttgaccc aattggcacc acagttgcag tctgccaaat cttcccttga acgcatcttt
    26221 tcagtcctag atgagcttga tgaagaagac gccaatgcgc tggagttgac agaaagtctg
    26281 acaggacaag tcagctttga acaggtcgaa tttggctatt cagaagacaa gccgcttatc
    26341 cgtaacttta atcttgatgt taagccaggt gaaatggttg ctatcgttgg accaacgggg
    26401 gcaggtaaga caacccttat caacttgctc atgcgtttct atgatgtcac atcaggtgct
    26461 atcaaggtag atgggcagga tattcgaaat ctttcacgtc aatcctaccg tagtcaattt
    26521 ggcatggtct tgcaggatgc ttggctctat gaagggacca tcaaggaaaa cctgcgtttt
    26581 ggacgtctgg atgcgacgga tgaggaaatt gtggaggctg ctaaagctgc caacgttgac
    26641 cattttatcc gtaccctgcc tggtggttat aatatggaaa tgaaccagga atccagcaat
    26701 atttcccaag gtcagaaaca gcttttgacc attgcgcgtg ccttgttggc ggatcctgct
    26761 attctgattc ttgacgaagc gacttcttca gttgataccc gtttggaact cttgattcaa
    26821 aaggctatga aacggttgat gaaagggcgg acaagtttcg tcatcgctca tcgcttatct
    26881 accattcagg aagctgataa gattttggtc ttgaaagatg gacagattat cgaacaaggt
    26941 aaccatgaaa gtcttttggc agacaaaggt ttctattata atctttatca aagccagttt
    27001 agtgaatcca aataaaaaaa cgaactccct tgtcagtgaa gacaggggag tttagtgttt
    27061 aataggcgat ttcagctagt agattttctg cggtggtggt cggtagaatt cgaacacgat
    27121 tgagagtcag taatccgtca ctagcagaag ccaagccgtt gttagtagtc acaccaagtt
    27181 tgtagccagc ttgttcagtt aaggctactg tatctgctga gtatcgtcca ccagggtagg
    27241 cgatagcgat ggtttcctga tttaattggc tgtcaagata ggctttagag gaagtaagtt
    27301 catttgtttg atcctcgata gaactatact ctaaatcagg gtggttgacg gtatgccctt
    27361 gaaaggagag ccctgcggtc tgcatttcct tgatttgatc aagagtaagg taccctgctt
    27421 gtccatattc agtaaatcct gtaatgacat tgttggttgc tttcatttga tattgcttaa
    27481 gcaatgggta ggcataacta taaaaatccc agaggctatc gtcaaaggtt agccagacaa
    27541 cctttttgcc agcaggaagg acattttctg tcaatacctt ataagcctct tcaggtgata
    27601 aagtatagta acctgcatct tgcaatgctt ttagatgact ttcgaaagtc gttggatcta
    27661 cgataagatt cgcattagct tcttcctcag gagccattac gtgaatggca tgatacatga
    27721 ggattggaag tttgataggt tcagtttgtt gttcccaaat gatttctgtt tgtacttcac
    27781 tactttctga agtcataaca cttgaagtgg ttgttgtctc taccgttgaa gctttggaat
    27841 cactttgttg cttagatggc tgttttagaa agattagaaa aatagatagt agagtcacta
    27901 ctaataatgc gatgccaagt agcattggca caagttgttt cttttgtgtg cggcttcgac
    27961 gggctcttct tgaatgtttc attatcttat ctccataatc atatattaaa acaattatat
    28021 caaatttttt gccaaatagt cagaatattt gttataatgg gagaaataca ttttaaagga
    28081 gagcacatgg tagttaagat aggattatta ggatttggaa ccgttgcgag tggtgtgcca
    28141 tttttattag aagaaaatca ggaaaaaata gagaaagctg cgcatgatag tattgaagtt
    28201 gctaaggttt tggtcaagga tgaagcagaa aaagaccgtc tcttggctgc aggtcatgac
    28261 tatcattttg taacaaatat tgatgatatt ttagctgatg aggacattgc catcgtcgtt
    28321 gagctgatgg gacgtattga gccagcaaaa acatttatta cacatgcctt ggaagcaggc
    28381 aagcatattg taacagccaa taaggattta cttgctgttc atggtagcga attgcgtgcc
    28441 ttggctgaag agaaaggtct tgcgctttat tatgaagctg cagttgcagg tggtattcca
    28501 atcttgcgta ccttggttaa ctcattggct gctgacaagg tgactcgtat cctcggtgta
    28561 ttgaatggta cttcaaactt catgttgact aagatggttg atgaaggctg gacttacgaa
    28621 aaagctcttc aaacagcaca ggaacttggc tatgcagaat ctgacccaac aaatgacgtt
    28681 gagggaattg atgcggctta caaggctgtt atcctcagtc aatttgcttt cgggatgaca
    28741 gttgattttg aacacgtagc acacaagggt atttcaaata tcacgccaga agatgtagca
    28801 gtggcacaag agttgggcta tgtcatcaaa cttgtgggtg atattcaaga aactacctct
    28861 ggtattgctg ccgaagtatc tccaaccttc ctaccgaaaa atcatccact tgcaagcgtg
    28921 aatggtgtga tgaatgctgt atttgtcgaa tctatcggca tcggccagtc tatgtactat
    28981 ggaccgggtg ctgggcaaaa accgactgca acaagtgtta tggctgacat tattcgtatc
    29041 gttcgtcgct tgaaagacaa tactatcggc aaagctttta atgaatatag ccgctcactt
    29101 caattggcag ccccaagcga tgtgaaaagc gaatattatt tctcaattga tgcccctgat
    29161 aaaaatggaa aaatgcttcg tttagcagaa atcttcaatt ctgaagaaat ttccttcaag
    29221 caaattctgc aacaagctgc agatggagaa acagcccgcc tagtgattgt gacccatgaa
    29281 atgagtaaga ctcagttgga aaatgtaaca gacaaattga gtaaagaaac agactttact
    29341 gtcttaaata cctttaaagt actgggagaa taagcaatga aaattattat tccagcaact
    29401 tcagctaata tcggtccagg atttgattca gtaggtgttg ccctttcgaa atatctaacg
    29461 attgaagtat ttgaagagac tgatgaatgg gtgattgagc acaatcttga acatgttcca
    29521 tcagacaaga acaatctttt gatcaagaca gctttaaaga ttgaaaaagg attgcagcca
    29581 catcgtatca gaatgattag tgatattccc ttggcacgtg gtttgggttc atccagttcc
    29641 gttatcgtag ctggtatcga attggctaat caattagcag gtttgaatat gacagcggat
    29701 gaaaaattac tcaaagctac agaaattgaa ggacatcctg ataatgtagc cccagcgatt
    29761 tttggtaatt tagtcatctc tagctatgtt aataagaaag tacaggcagt tgtaacagaa
    29821 ttcccagaag caagttttgt tgcctttatt ccaaactacc cactgcgtac ggttgaaagc
    29881 cgaggtgtac tgccttctca gatggggtac aagaaagcag tggctgctag tgccattgca
    29941 aacgttgctg ttgccagttt gatggcaggt gatctggaaa aagctgggaa agcaattcag
    30001 tcagacatgt tccatgaacc gtttcgtcag ctacttgtta aggagttttg tccaatcaag
    30061 caaactgcac aggagttggg agcctatgca acctacttat caggtgccgg tccaacagtg
    30121 atggtattag cgcccaaaga tagggaggat gctattgttc tagcattaga ggaactaaat
    30181 ctagacggaa ctgtccaccg ccttcaagtt gataccaaag ggattgctat tgtatagata
    30241 gtgagaatct atcatttgca aaactaaaca ggtttatttt attggagttc gccatcgcta
    30301 ctatatgcgg taggaaggga actc
//
LOCUS       DASGBY010000008        28994 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.008, whole genome shotgun sequence.
ACCESSION   DASGBY010000008 DASGBY010000000
VERSION     DASGBY010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28994
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.008"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            217..357
                     /locus_tag="U1396_000268"
     CDS             217..357
                     /locus_tag="U1396_000268"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341491.1"
                     /translation="MNEILNAEKYTSLVVETEDGKKIAEITLTEAIPAEGYVVRLTPK
                     YD"
     gene            complement(354..578)
                     /locus_tag="U1396_000269"
     CDS             complement(354..578)
                     /locus_tag="U1396_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001107539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HEM5341492.1"
                     /translation="MAKNQHVVPNKNGGWDVKGAGNSRATKHVATQAEATKIARDIAK
                     NQGSELFIHRPNGQIRERNSYGNDPYPPKG"
     gene            721..912
                     /locus_tag="U1396_000270"
     CDS             721..912
                     /locus_tag="U1396_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341493.1"
                     /translation="MWEKIEKLLKEKSMTKNKLATLAGINKNSLIDLKMGRKKSLKFE
                     DVIKIADALDVSLDEFRKG"
     gene            937..1122
                     /locus_tag="U1396_000271"
     CDS             937..1122
                     /locus_tag="U1396_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001840842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341494.1"
                     /translation="MLRARDNLTQKQAGQLVGVTADTWANWEKGKTNPDVKTAYKIAE
                     NFGLSIDDIIFLDSIAV"
     gene            1159..1332
                     /locus_tag="U1396_000272"
     CDS             1159..1332
                     /locus_tag="U1396_000272"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341495.1"
                     /translation="MRPKRYPYQRRQVIVTAKSNYYSIHRYVHEVLEVSNKKDPATIQ
                     AVAELIKIYTDQF"
     gene            complement(1314..1538)
                     /locus_tag="U1396_000273"
     CDS             complement(1314..1538)
                     /locus_tag="U1396_000273"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341496.1"
                     /translation="MLKQRIQRALEQGKKVAFVFSDSHKLSITEIADEINLPNWISVK
                     TATSSKVHYVNLEQVRSFEITDKHHQNWSV"
     gene            1609..1809
                     /locus_tag="U1396_000274"
     CDS             1609..1809
                     /locus_tag="U1396_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000359663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5341497.1"
                     /translation="MSKLKGYRVMLGLTQKNMADKLDISLQSYNNKETGKTPFKDKEK
                     KAIKTIVAEVKPDITIDELFYS"
     gene            1922..2215
                     /locus_tag="U1396_000275"
     CDS             1922..2215
                     /locus_tag="U1396_000275"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5341498.1"
                     /translation="MLEAFEVLKQEIIQEVLSEVRKELAVERKPSQMSDKAIGVKEAC
                     EIMGMSRNPFMAIVKAGKIPYHMAGTHFRFDQRDIEYYKAKMKVKKKVKGISA"
     gene            2212..2460
                     /locus_tag="U1396_000276"
     CDS             2212..2460
                     /locus_tag="U1396_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341499.1"
                     /translation="MTEALLTLGIFAVPILTAAVVEQRKVEKKRMREEFEEIRRRDYL
                     YGFKAGMGYQSTCDIEKARNGLKRDAQQVDKEIARYAG"
     gene            2450..2602
                     /locus_tag="U1396_000277"
     CDS             2450..2602
                     /locus_tag="U1396_000277"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341500.1"
                     /translation="MQDNHTTVEISVEEYIQLRNKVNDLQTENRFLRTIVDSVAVVMK
                     NSGMVR"
     gene            2751..2930
                     /locus_tag="U1396_000278"
     CDS             2751..2930
                     /locus_tag="U1396_000278"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341501.1"
                     /translation="MGHPVGCVKRDNWHGIYMARTPQELEIGMSADIKQAESTLESVR
                     IRRNIDLEEYWNNVS"
     gene            3298..3447
                     /locus_tag="U1396_000279"
     CDS             3298..3447
                     /locus_tag="U1396_000279"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341502.1"
                     /translation="MKQLKFLIVVLLVAHSVLAILKGFDVWSSIDLVLTLLLVFLVVK
                     SDKEE"
     gene            3450..3620
                     /locus_tag="U1396_000280"
     CDS             3450..3620
                     /locus_tag="U1396_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000074663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEM5341503.1"
                     /translation="MTKKMGRPVKGSEPMDKQLVVRMTETMHNDITEYAEKNGIGKME
                     VVRKAVEEFFDK"
     gene            3792..4001
                     /locus_tag="U1396_000281"
     CDS             3792..4001
                     /locus_tag="U1396_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341504.1"
                     /translation="MEELTLTMEQALILIAVLIPLNLILWFCVGLGTYQAHSKPKNTS
                     EGKYTRHLENERYGAYIQLAGKRYN"
     gene            4013..4453
                     /locus_tag="U1396_000282"
     CDS             4013..4453
                     /locus_tag="U1396_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001074391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341505.1"
                     /translation="MAKTYTLTEEELEALIKERMEHKPITPQGLFNPVAFEGSELLEI
                     NQKYPEVVARLSQNWRVKSVNPVGFIYTNKPRYNEVIDETSYHKLSFGQIHNSVRSLV
                     LNVFGKSNNRDLTEEEYEMAQELYAELKEWYIRAYDKRLETLES"
     gene            4463..5188
                     /locus_tag="U1396_000283"
     CDS             4463..5188
                     /locus_tag="U1396_000283"
                     /inference="COORDINATES: protein motif:HMM:NF018914.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein A"
                     /protein_id="HEM5341506.1"
                     /translation="MHIDEVRNNQFYQFPQWLLEEPYNKLSDRAKIMYTLLWDRRKLS
                     AKNEWYDENGAVYVKYTNKRLMEKLNCSEPAIIKTKKELSEAGLLNEIRKGKNQPNSL
                     YIFGAKEYLAHDLKSFKPSHTNINQTNINNINNNTSEQNPLKKIVYTIRQNWGKDLTP
                     IELETVTKMLGDYPFEIIDFAISEATLRNKKTIRWVERCCLDWYVHNNLETVTAIQDY
                     LLAKKSWTRKETDTPDPNYPPPY"
     gene            5201..6028
                     /locus_tag="U1396_000284"
     CDS             5201..6028
                     /locus_tag="U1396_000284"
                     /inference="COORDINATES: protein motif:HMM:NF013828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM5341507.1"
                     /translation="MKIGEVHDVIDEMCLKHQVYLWRTKHKVMVKNETVPRYITCCPE
                     CTREKMNEQQLREVGQALEAETWASSYDIFAKKSMIPKELKDASYKTYTITNRIEEEA
                     KQFALRLNEFYFKHQGKGNAIIQGKPGIGKSHLSISIARKLNMDWRSISEPKSVLFIS
                     VPKMFQRIQEGFGYKDGTSAQQMIDMLTKADYLFLDDLGKESTFGRQTKEANDWKQNI
                     LYQILDERDTTIINTNLTGEQMQKVYDRSLVSRIMKGAMNNVFKYPDNAQSRRELPF"
     gene            6037..6198
                     /locus_tag="U1396_000285"
     CDS             6037..6198
                     /locus_tag="U1396_000285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341508.1"
                     /translation="MQEKLKMIADHEEKYGQIGDEVRGLLLQQKHHIIQKKLDEWAGW
                     SEIGGKVEF"
     gene            6344..7201
                     /locus_tag="U1396_000286"
     CDS             6344..7201
                     /locus_tag="U1396_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019292867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HEM5341509.1"
                     /translation="MTSNQLMTQHNNFFKSEAVQHRLQEVVGKRSNQFATTMLSILRD
                     NDMLSKADSSSILTAALKAVSLNLPIEPSLGFAYVVPFNNRKKRIIEAQFQLGYKGLI
                     QLAMRSGQITKLNAGPIYEGQFKSFDEVTEELDYIKGYKKNENEGITGYFAYFRLSNG
                     FEKRIFWTLEQVKEHAKRYSQSYKLGYGPWVDNFDAMASKTVLKSILSTYAPLSTEMQ
                     EAISADNDDLNFNQSDEIKVAEPVNADQQLLDDLMSVDVETGEILEEVSELKENGELD
                     LKYEDPNAR"
     gene            7179..8003
                     /locus_tag="U1396_000287"
     CDS             7179..8003
                     /locus_tag="U1396_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease-like domain-containing
                     protein"
                     /protein_id="HEM5341510.1"
                     /translation="MKTLTQDNYYDDKDYMSVSRFKQYLECEAKALALDTGKWIDERD
                     RKPLVFGNYVHSYFESAEAHQKFLEEHKSDLFSSRKPYGLLADYKLADKVIATLETDE
                     LFNNLYHGRKGDRVEKEMIVTGTITGVPFKGKIDSINHTRNYMVDLKTMKTIYGEEWC
                     QELKRKVPGAIANIINYHYHVQTAVYRELLKQMTGRSYKPLIVAVSKENEPDKEILSL
                     DEETLSEGLEFVSERAGHVWDVATGKVGPIKCGNCNYCRSKKKLNRIVSIRELLEM"
     gene            8020..8664
                     /locus_tag="U1396_000288"
     CDS             8020..8664
                     /locus_tag="U1396_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341511.1"
                     /translation="MFKTSDLLNYRQLWWLDKFLIGHKGFIAGGCFKNIFNNERVKDL
                     DIFFENENDFLEAKKYYKKQAKENPTDWKFSYENKNCWSIYSVKEKVRLELIRNTYGT
                     PKNVISNFDFTITKFAYYKNYENVDEDDYMAVFELLFHEDFFEHLHTKRLVVDDRLPY
                     PVSTFNRLMRYAKYGYQPCRETKIKIVTSLAELNPDNQEDFEEQLGKSLYEGLD"
     gene            8760..9035
                     /locus_tag="U1396_000289"
     CDS             8760..9035
                     /locus_tag="U1396_000289"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341512.1"
                     /translation="MTNFDEKLKQLEEESIAEFSLVAGTIDEAGALLELVKSNGIKWF
                     SGEPIDYMSECIYKKMQTYPEKRFVLNFRNGFDLKKQRTIFCTWEHR"
     gene            9189..9509
                     /locus_tag="U1396_000290"
     CDS             9189..9509
                     /locus_tag="U1396_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341513.1"
                     /translation="MLKTPFTLVTSESEQSMEIIGGGLWNIKAEFVERDNQISLDENG
                     DMFEPEYRLVLEAEYPDKLILDGAYIAKEIGKDIKEIQTLFEFIEENKKNLFDELGFH
                     GVIV"
     gene            9506..9955
                     /locus_tag="U1396_000291"
     CDS             9506..9955
                     /locus_tag="U1396_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014634361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HEM5341514.1"
                     /translation="MRLIIPIEPKPQSRPRASVRGRHATVYEDGKMVAWRKKCTELVR
                     QLYDGPYFDGPIKVDMTFYMPAPKSMSEPPKPRSKAKKVQEYNDFVNARIYVDKKPDL
                     DNLEKAVYDSISKAGVVWADDNIIVEHTTRKVYSPRPRIEIELEEIS"
     gene            9952..10701
                     /locus_tag="U1396_000292"
     CDS             9952..10701
                     /locus_tag="U1396_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017767690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM5341515.1"
                     /translation="MKFELFNDHFENAKRYNIPRAQLIIADIPYNLGNNAYASDPRWY
                     KDGDNAKGESKLAGKSFFDTDNDFKINNFFDFCSRLLKKEPKEKGKAPAMIVFHAWQQ
                     RDMVIECGKKHGFNNAYPLYFTKKSSPQVLKANMKIVGAVEEATVLYRDKLPKFNNNG
                     AMILNHAPWEKDSSYPVIHPTQKPIPVLKRLIEIFTDEGDVVIDPVAGSGSTLRAAIE
                     MNRSAYGFEIKKDFYKKAKEQMLSSYQPSLF"
     gene            10746..11078
                     /locus_tag="U1396_000293"
     CDS             10746..11078
                     /locus_tag="U1396_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000033707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341516.1"
                     /translation="MKGIKVIDIGCEPKETQFGTCELCFSYGVADNPYMILEFPDGTQ
                     VTHDTYYWDWGGDYWEYSVANVVDFSAWLSEQELSDEEVEALKGDGTDVLIRLIKEYN
                     YQTEETDE"
     gene            11071..11550
                     /locus_tag="U1396_000294"
     CDS             11071..11550
                     /locus_tag="U1396_000294"
                     /inference="COORDINATES: protein motif:HMM:NF019467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM5341517.1"
                     /translation="MNKQELEKQAEALYTDVRSFLDNTFELIDQIHEPQRVVVPKHIA
                     EKIEYCKDTEGYGLFHAMDYCYQYKDSADWLECNEETFARAWLDGYEIEQEKLCTVEI
                     PNNGGTLVLASIHHAIKLVDGNKHFPGKFTKESIEYAGFGWVFDCDGVKVVEVSDEV"
     gene            11540..11701
                     /locus_tag="U1396_000295"
     CDS             11540..11701
                     /locus_tag="U1396_000295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341518.1"
                     /translation="MRSEKRSLAINELKEALKDKLVKKICGGRVWVVSAEKQEVLNDD
                     QRCPIHTET"
     gene            11918..12124
                     /locus_tag="U1396_000296"
     CDS             11918..12124
                     /locus_tag="U1396_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000180424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341519.1"
                     /translation="MINENLGVLLVDVPEPRFAVYHFVYLSELGFMIKPSSDSKIILD
                     LAYKCTQEEAQKYQQFRWVALEDL"
     gene            12121..12384
                     /locus_tag="U1396_000297"
     CDS             12121..12384
                     /locus_tag="U1396_000297"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341520.1"
                     /translation="MTTADKIKYILQKTGWTRDQFAIEMGVTAPSVYKWLDGRPPRQR
                     MLDKIDELYEQTKDTKSKVLAQRGKIRILYPYYSHQRQPWERR"
     gene            12386..12805
                     /locus_tag="U1396_000298"
     CDS             12386..12805
                     /locus_tag="U1396_000298"
                     /inference="COORDINATES: protein motif:HMM:NF019021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1492 domain-containing protein"
                     /protein_id="HEM5341521.1"
                     /translation="MRTIKARLKSLSLVDSKIKSKRLEIASLRSGILTAVQYTDEPKG
                     GSQKNSSEELNARIIDRTEEIYQEIERIYDDRDRMVKAIDNLEDPLQSQILRLKYVNG
                     YSWSMIYREFPLHSRSTLFDMCKKGEQLLEKSLDFLD"
     gene            12927..12999
                     /locus_tag="U1396_000299"
     tRNA            12927..12999
                     /locus_tag="U1396_000299"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12960..12962,aa:Asn,seq:gtt)
     gene            13125..13437
                     /locus_tag="U1396_000300"
                     /pseudo
     CDS             13125..13437
                     /locus_tag="U1396_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599294.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            13516..14937
                     /gene="terL"
                     /locus_tag="U1396_000301"
     CDS             13516..14937
                     /gene="terL"
                     /locus_tag="U1396_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEM5341522.1"
                     /translation="MMDRATIRQQARFELARRDFFYYCHLMASDFYKSSRKYLVELCN
                     DLQGFLSDDEHNVLVINEPPRHGKSRTAGMFVQWLLGNDNDKKIMTGSYNETLSTVFS
                     KNVRNAIQETKADEDVVVFNDIFPDTHIKYGDAAMNLWSLEGGYNNYLATSPTGTATG
                     FGADIIIVDDLIKNAEEANNATVLEKHWEWFTNTMLSRLEEGGKIIIIMTRWHSQDLA
                     GKALVELPKSDYKVKHISMKAYDEATDTMLCDEVLSKQAYLQKTKTMGADIASANYQQ
                     EPIDIKGRLYSGFKTYVDKPTFKRISAYTDTADTGKDYLASYIYGVTMDNEAYILDVV
                     FTKEPMEVTEPLLAQKLAEWQVNTCDIESNNGGRGFARNVERLTQDSYQNRYTVFNWF
                     HQSQNKQARILTNTTWAIEHIYFPENWRHRWSELYQNLMSYQREGKNAHDDAADALTG
                     VVEAINDKIRTKAKVKRKSLYGL"
     gene            14950..16413
                     /locus_tag="U1396_000302"
     CDS             14950..16413
                     /locus_tag="U1396_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM5341523.1"
                     /translation="MEEVLVYSRSLYNEQNLDKDIIYKLIVKHDQTSSKLKKLKDYYL
                     GKHAIEKHTRRSNLPNFKTVANHAKDIADTATGYFMGNAIRYPKTDDMDIEDLLKTFD
                     SADVDSTDLDNALNMAIYGRAYEYIYVKEGENELVTRSLEPENTFIVYDDSIEQKPLF
                     AVYYYQTKDNVTEESYYRAQVVTENLQYSMSLREQKKVSEEGIPHNLEGLPIIEYRNN
                     RYMVGDYEQQISLIDAYNSLMGNRVNDKEQAIESILVLYGAALADTPEEAKEAMQILR
                     EEGLLELPKDANAEFLKNVLDEASVEVLRKSLKEDIYTFSHVPNLSDENFAGNTSGVA
                     MEFKLLGLEMITKTKERYYIKSLHKRIQIFADYYNWSQIYENAKAIIPQFSRGLPKNL
                     LELSQIISNLKDKVSLRQLISLLPFVEDPDAEIEALEKEKTQEEPAFSQNLPYEEGVT
                     DGQSEVLGEAESPANGSGDGPGRANRKATRRNPQASK"
     gene            16343..17812
                     /locus_tag="U1396_000303"
     CDS             16343..17812
                     /locus_tag="U1396_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM5341524.1"
                     /translation="MVQAMDQAEQTAKQLDEIHKLASRHITSKIDQIFESYRRDHGLT
                     EDEAARVLANVKDLSDIRELKLALQNTTDSEEIRQLLILLDSAPYASRIEKYEALQRE
                     VDNLPARLYKAENEASRAFYDEFIPDAYYHSIFDLQQQSGVGFAFNRIDPEEIRAIQQ
                     TPWLGANYSERIWGNTQALANELQKQLAVSLLTGRSAHETAEVIEAQFGKGSQNARRL
                     IRTETSYFHAEMEAKAYEEADVEYYRFLATLDLRTSSICREHDGKIYKVSERITGKNY
                     PPMHPWCRSDTIASDDSEWLAKATRSARDPVTGKTIQVPANMTYKDWYEKYVKPKYKA
                     DNLDIWKIERANNQYEKYKSILGDKAPKSLEDYIDLKYNDKEGYGQLQDQARWIKAKF
                     PSEKSFNGHFEKHGHEFPSLTKEEYRKLASELIASPTDENILGYETEGGRRVRYDKAE
                     NIIVIGRRNKNNQARLNTMLKPDEGEKYYYENYKRDFPD"
     gene            17781..17981
                     /locus_tag="U1396_000304"
     CDS             17781..17981
                     /locus_tag="U1396_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341525.1"
                     /translation="MKTTNEIFLIDGEEYIRCPVCGRNVMLFDVCECNWENTGETNID
                     GGPNKMTLEEAKKAYAEGRPII"
     gene            18195..18431
                     /locus_tag="U1396_000305"
     CDS             18195..18431
                     /locus_tag="U1396_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341526.1"
                     /translation="MNKRIKKKYRPIQALEQWLLAISTTIDIIVNGQNRLYNRVAELE
                     NIIERNAQATNSRFDYLEKKVANKLSKKSWFSRK"
     gene            18443..18733
                     /locus_tag="U1396_000306"
     CDS             18443..18733
                     /locus_tag="U1396_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341527.1"
                     /translation="MRYRKKPVEIEAVQWNGRNFEDVYSLCGRSQLNYDEETNTLYIL
                     TLEGVMRADEGCYIIKGIHGEIYPCKEDIFNDTYEAIGPQNIVGFRSVLDSM"
     gene            18897..19418
                     /locus_tag="U1396_000307"
     CDS             18897..19418
                     /locus_tag="U1396_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4355 domain-containing protein"
                     /protein_id="HEM5341528.1"
                     /translation="MNEETQTVEAVEDDKQVAAEPEQVTTDPKDEKKYTDADVDAIID
                     KEFAKWKAEQEKAESEAKKLAKMNAEDKQKYQLDKREQDLADREAEITRRELTAEAKT
                     ILSERGLPIELVDVVNLADADSVRDSIDAIQKTWEAAVLKGVADKTKGSAPMKKAPQE
                     QPTVEKWERDFLK"
     gene            19436..20452
                     /locus_tag="U1396_000308"
     CDS             19436..20452
                     /locus_tag="U1396_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding protein"
                     /protein_id="HEM5341529.1"
                     /translation="MPFENINTATSREKFLGIIEKVVAKKSYSAPLLLSNDAVEMNGR
                     SFTVTKSDTTELKDYKRNADNEFDHAQTEERTYTLDQEKYWGRFVDRLDERDSNGEVN
                     VNYVVARQAAEVVAPYLDHLRFDALLGNVSDNVVPANTKGANNSYQAVLDVSEKLDEL
                     DVVENRLLFVTPAFYKAIKSEIVNLPQGDTNQTVLYKGYVGQLDTFTVYKVPSKYLKG
                     VQAVATIGGVVVSPIQVDETKYNNNIPGRFGELVEQLLYTGAFVFDFDQKYIISIATS
                     KPEAKPSAQGELNIRAEQWVSGATYEAGARVQNEGKLFEATKKVNSSSTAPGSDSANW
                     KEIV"
     gene            20463..20651
                     /locus_tag="U1396_000309"
     CDS             20463..20651
                     /locus_tag="U1396_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341530.1"
                     /translation="MRFKVLKEFTDDELGFVHRVNDIIELTKERHKQMKKNAKLQDVN
                     LADYIEEIKTKGAEAPAK"
     gene            20661..20990
                     /locus_tag="U1396_000310"
     CDS             20661..20990
                     /locus_tag="U1396_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HEM5341531.1"
                     /translation="MLEDLKTLTGESDDKILSSLLLRAKNIILTETNRSQLTPALEGL
                     QLEVALELFNRQGSEGETSRSEGGVSVSYKDGLSDTILNGIRSHRLARVAGRAFEAKP
                     TEAVSDS"
     gene            21258..21770
                     /locus_tag="U1396_000311"
     CDS             21258..21770
                     /locus_tag="U1396_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEM5341532.1"
                     /translation="MSRLIGADRLISKLKRLSSQRQTEIIAKAVHNAAKNVVQADAKL
                     RAPVNDGDLRAGIKVRMSKPGNPRAEVVSTSDHGGFVEFGTGPKGATNHAGISPEVSV
                     SYRSTPWYVHESQIDAGPYRFPKIGEFYKMFGQVAQPYLYPALKDNEERVTKNINRYV
                     KRKLIEEVSK"
     gene            21767..22135
                     /locus_tag="U1396_000312"
     CDS             21767..22135
                     /locus_tag="U1396_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341533.1"
                     /translation="MINIKPIIYKKLKEVADNVTDTYPQDWENFPVIIYLEEENKPYE
                     ITDDTEQMSYLRYKVDIFHNDSTSELAVAIDAIFASLGLKRTSSVDTPDPTHLRHKVM
                     RFEGILDLNSRIVYQYRMEG"
     gene            22139..22555
                     /locus_tag="U1396_000313"
     CDS             22139..22555
                     /locus_tag="U1396_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM5341534.1"
                     /translation="MLANGIKLKMSETKGSSYTVIEGLKEVPELGIDPEKVENTTLAD
                     TIKQYEFGIGDAGELEYKFKYENSKTTSSYRTLRKLADAKAVRHFEQEYPDGTKVHFS
                     AQIAVKLGGGGVNSAIEFTLKLALQSDLEFTDPVAL"
     gene            22566..22940
                     /locus_tag="U1396_000314"
     CDS             22566..22940
                     /locus_tag="U1396_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341535.1"
                     /translation="MSTRKPYITWTVKGTDYKLRLSTRQACEVEEKLGVNLLKIFMPQ
                     PGEQFNLPPLKVMLLVVQGALQKFHHGIKLDDVYDLFDDYIDEGYGQTELMSDIIVPL
                     FEVSGFIPRNKEKEEPTLTVVE"
     gene            22967..23326
                     /locus_tag="U1396_000315"
     CDS             22967..23326
                     /locus_tag="U1396_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341536.1"
                     /translation="MINGFYPTALDAGVDPFSFWEYTLLELKELVESYNRQQFQRQKE
                     IASHNFVQSQMIARFVSMMFQEKGEAPDIWDFYPTLFEEDRRQIEQARIERDLIIHRE
                     RMRAFAERMRGRFKTSE"
     gene            23351..26488
                     /locus_tag="U1396_000316"
     CDS             23351..26488
                     /locus_tag="U1396_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341537.1"
                     /translation="MATTLEELRVIVEGEIAPFQKKMKQLESQMKQTQNKIENKTKGL
                     RERVGQQAGGMAAALGKLAKITALAYLGKKMLDLGMYSTQMALEVSASVNQIKRQMGE
                     SSQAFLKWIDNNANAMNMSVGEATKYGAVYSNLFSNFIKDSDKLSAYTGKMLQTSAVI
                     AQGSGRTMTDVMERIRSGLLGNTEAIEDLGINVNVAMIESTNAFKRFANGQSWQQLDY
                     NTQQQIRLMAILEQATAKYGNTLQQSVNGRISLFKSLLSDAALNIGNAMLPIINAMMP
                     VLNSFAMVLKNVTAKLAEFIGLMFNKKANVKNSAIGNLAQGAQNANDAVGGLGDAMDG
                     VDDASGGTADNLDDTAKSAKKAAKELLGLAGFDEITTLNLNKDDSDGAGSGSGGGKGG
                     KNGKGGSSGNGTDILPEIELTDMDNQFKSIFDGWDKTLQPLFDYLSKLKDLFKDGFNM
                     SFRADSLDRFKNALVGIWQSLKDIFADGTVLQAAARFGEKLSYALGQGTGAVANVVMG
                     IAVFIAESLDKSLKETKLDIKNWLIRQFEIKGDTITSIGNLAQAIGQIFYDTITSVAA
                     TDIGSAIISSLIYIRMGIDDITGKIERDFWAFWERLAVDNQAGITTAFIGLLSAVEPI
                     FASIKDLFKNTFISLNATYDEHLKPFFDSFIEGFSSIFGTLIDSWNNDVQPVLDSIGQ
                     LFSDMFDNHIQPFVDNFLYAFGQVVDLLKVVWEEGFLPLFDWIAANILPVLVPIFQTL
                     AEWFVQAWNVVFDVLGAVLKILGGIIEFLVGVFTGDWEKAWDGIVQVAKGMWDLLSSI
                     FMFVWNVILSFLKGVWNTIVAILQAGWDAIVRIFQGLGKWFGDRWKDVENIFSNVGRW
                     FGQKFSEAWNGITNAFSNVVGFFRGIYDNIVSWFSNIGGAVATAVSGAFRYAMNGVFA
                     TIENAVNGFIGMINGVIGLINNIPGVSLGSIGYVNLPRLARGGIVDSPTVAMIGEAGK
                     EVVMPLENTGFLQTMGRVVGGAVVNALGGGLPQSSGLPSGDIVINIGSREFGRFAIDE
                     INKAQAQAGELLLNI"
     gene            26498..26848
                     /locus_tag="U1396_000317"
     CDS             26498..26848
                     /locus_tag="U1396_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341538.1"
                     /translation="MSRLIINGVTVVPPKSFQVAINDVDGETGRNANGDMVRDRITTK
                     RKLECDWGMLTQAEMAQIQNAVQPVFFEVSYPDPILGQTSKTFYVGDRTAPAYSFDEK
                     LKPWSGLKFSLIER"
     gene            26850..28706
                     /locus_tag="U1396_000318"
                     /pseudo
     CDS             26850..28706
                     /locus_tag="U1396_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636662.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         9582 a         5071 c         6827 g         7514 t
ORIGIN      
        1 ccaattaaat ttgctgactt ttaaaaagta gctatctgaa atccattcga aatctatttg
       61 taatacaagt ttcgatgtcc aatagatgac gaaccatagt tgtcctacta aggtaagaaa
      121 aagtaggata tttaagaatc taattaagtt tttatacata aatttctcca atcattttta
      181 caaacattat accaaattta gaaaggggtg ggaaaggtga atgaaatcct gaatgccgaa
      241 aaatatacct cgttggtcgt agagacggaa gatggtaaaa aaatagcaga aatcacttta
      301 acggaagcga ttcctgctga aggctatgta gttcgactga cgcccaaata tgattaacct
      361 tttggtgggt atgggtcgtt accatatgaa ttgcgctcac gtatttgtcc atttggacga
      421 tggataaata gttctgaacc ttggttctta gcgatgtcac gggcaatttt tgtggcttct
      481 gcttgcgtgg ctacgtgttt ggttgcacga ctattgccag cacctttgac atcccagcca
      541 ccgtttttat tcggaacgac gtgttggttt ttcgccatat tcttctcctt tctatcaaaa
      601 ttttatgaat aaaagatgtt gggttattca tgagaatatt atagcagaaa gttattgaaa
      661 aatcaacatg tagttgtgga taactttttg aatactatat ctagtaactg aaggaagaat
      721 atgtgggaaa aaattgaaaa actgctaaaa gaaaaaagta tgactaaaaa taagcttgct
      781 acgcttgcag gcatcaataa aaatagccta attgatctaa aaatgggtag aaagaaatcc
      841 ttgaagtttg aggatgtcat taaaatcgct gacgctttgg atgtcagcct agatgaattt
      901 agaaaggggt gaggagtatt gaaatggacg ctaaaaatgt tgcgtgccag ggacaatctt
      961 acgcaaaaac aagctggtca gctggtaggt gttactgctg acacatgggc aaattgggaa
     1021 aaagggaaaa caaatccaga tgtcaaaaca gcctataaaa ttgcagaaaa ttttggattg
     1081 tctatagatg acattatttt tttagacagc attgcggttt aaccgcacaa aaccaaccaa
     1141 actagaaagg agaattacat gagaccaaaa cggtatccgt atcaaagacg gcaagtaatt
     1201 gtcactgcaa agtcgaatta ttattctatt catcgctacg ttcatgaagt cttagaagtt
     1261 agcaataaaa aagaccctgc gacaattcaa gcggtcgcag agttgataaa aatttacaca
     1321 gaccagtttt gatggtgctt gtctgtgatt tcaaacgagc ggacttgttc aagattgaca
     1381 tagtgaactt ttgaagatgt tgcagtttta acagaaatcc aattcggcaa attgatttcg
     1441 tctgcaattt ctgtaatcga tagtttgtgg ctatcagaga aaacaaaagc gactttttta
     1501 ccctgttcta acgcccgttg aatacgttgt ttaagcatat aatcacctcc tttccgtatt
     1561 tattatatca cggagaggag aactaaccga actagaaagg agaacggcat gagcaaactg
     1621 aaaggctatc gggtcatgtt agggctgacc cagaagaata tggcggacaa gcttgatatt
     1681 tctttgcagt catacaacaa caaagaaact ggcaaaacac catttaaaga caaggaaaag
     1741 aaagcaatca agaccattgt cgcagaggtt aaaccagaca tcaccattga tgaactattt
     1801 tacagctaga ggaataacat tggacgaggt atgcgaaaaa accactgcgg gaacagtggc
     1861 tcaacaaaat tacttactta aattataaca cacgaaagcg aggtttgaca agatggatac
     1921 tatgttagaa gcgttcgagg tcttgaaaca agagattatc caagaagtct tgagtgaagt
     1981 tcggaaagaa cttgctgtcg agagaaaacc ctctcagatg tccgataaag ccattggcgt
     2041 gaaggaagcc tgcgaaatca tgggaatgag tcgtaatccg tttatggcaa ttgtgaaggc
     2101 tgggaaaatc ccttatcaca tggctggaac tcactttcgt tttgaccaaa gagatattga
     2161 atattacaaa gcaaagatga aagtaaagaa gaaagtgaag ggaataagtg catgacagaa
     2221 gcattactta cattaggaat tttcgctgtg ccgattttga cggcggcagt agtggaacag
     2281 cggaaggttg agaaaaagcg aatgcgtgaa gaattcgaag aaattcgtcg cagagactac
     2341 ttgtacggct ttaaagcagg catggggtat cagagtacct gcgacattga aaaagctcgt
     2401 aacgggctaa agagagacgc tcagcaagta gataaggaga ttgcacggta tgcaggataa
     2461 tcacacaaca gttgaaataa gtgttgaaga atatattcaa cttcggaaca aggtgaacga
     2521 cttgcagaca gaaaatcggt tcttgagaac aatcgtcgat tctgtggcgg ttgtgatgaa
     2581 aaatagtggg atggtgaggt aggaagatga atctgagtaa aaacgacata aagtgtctga
     2641 atgctatcaa gccttacact ttagaaaatt tactgagctt agatagctta gcgtttaagt
     2701 tagggcgcaa aagaagaggt gttcaaacaa cactttctag acttaaatgt atggggcatc
     2761 cggtaggttg tgtgaagaga gataattggc acggtatcta tatggcacgg acgccgcaag
     2821 agttggaaat cgggatgagt gcagatatca aacaagcgga atcaacgctt gaaagtgtgc
     2881 gaattcggcg caacatagac ttagaagagt attggaacaa tgttagttaa tccgcaatcg
     2941 ttttagattg cagtgtcctt tgacaattga atatgggtgc gttgggaaac tttttccaaa
     3001 aaaataaaaa atgcattgca aaactattga caaatgcatt gcaaaaatgt ataattagtt
     3061 cataaggttg attaaggagc aatcttagac aaggaaacta acggaaagga gaaagaactt
     3121 ggaaaaggac aataaaaaag aagaacttgc gatacttgtt ctgaaagttg aactactaag
     3181 agctatctta gaaatcgcaa aaattcttct agaaaaataa aaaccttagc taagcagggg
     3241 cgagagcccc taggcttggc cttgtcctta ttataccaag tttaagaaaa ttaggcaatg
     3301 aagcaactaa aatttttgat tgttgtcttg ctagtagccc atagcgtatt agctatctta
     3361 aaaggctttg atgtatggtc tagcattgac ttagtattga ccctgctgtt agttttcctt
     3421 gtcgtcaaat cagataagga ggaataacat tgactaaaaa aatggggcga cctgtcaaag
     3481 gttctgaacc aatggacaaa caattggttg ttcgaatgac tgaaacgatg cacaacgaca
     3541 ttactgaata cgctgaaaag aacggtatcg gtaaaatgga agttgtgaga aaggcagtcg
     3601 aagaattttt tgacaaataa aaatagccct aacgtgcttt agtttggcga ccgaacacgt
     3661 tagagcgaac aacgcaccca tattcatacg aaaataggca cgttttgatt atatcatagc
     3721 gtacctgttt tcagcaaccc taaaaacaac aggtacgctt tttgtgtacc ttgaaatcga
     3781 aaggacacat catggaagaa ttgacattaa caatggaaca agcattgata ttgattgccg
     3841 ttttgatacc tctgaacctc attctatggt tttgcgttgg tttaggtact taccaagccc
     3901 atagcaagcc gaaaaatact tccgagggta aatataccag acaccttgaa aacgagcgct
     3961 acggggctta tatacagctt gcaggcaaac gctacaacta ggaggcaatc aaatggcaaa
     4021 aacatacaca ttaaccgaag aagaattaga agcgcttatc aaggaacgca tggaacacaa
     4081 gccaatcaca ccacaaggat tgtttaaccc tgtagctttt gagggtagcg agttgctgga
     4141 aatcaaccag aaatatcctg aagtcgtagc gagattgagc cagaattggc gagtgaagtc
     4201 cgtcaaccct gttggcttta tctacaccaa caaaccacgg tataacgaag tgatagacga
     4261 aacaagctat cacaagttgt catttggaca gattcacaat tctgttcgct ctctggtctt
     4321 gaatgttttc ggtaaatcca ataaccgaga cttgaccgaa gaggaatacg aaatggcgca
     4381 ggagctatat gcagaactga aagagtggta tatccgtgct tatgataagc gattggaaac
     4441 attagaaagt tgagggaaga gtttgcacat tgacgaagtt agaaataacc agttttatca
     4501 attcccgcaa tggttgctgg aagagccgta caacaaattg agtgacagag caaaaataat
     4561 gtacacgttg ttgtgggata gacggaaact atctgctaaa aatgaatggt atgacgagaa
     4621 tggcgcagtt tatgttaaat acaccaataa aagattgatg gagaagctca attgttcaga
     4681 gcctgctatc atcaagacaa aaaaggaatt atcagaagct ggtttgctca acgaaattag
     4741 aaaagggaaa aatcaaccaa actccctgta tatctttggg gctaaagaat atttagctca
     4801 cgaccttaaa agttttaagc cgagtcatac taatattaat cagactaata taaacaatat
     4861 aaataataat actagcgagc aaaatccctt gaaaaaaatt gtctatacca ttagacaaaa
     4921 ttggggaaaa gatttaacac caattgaact tgaaactgtg acaaagatgt taggtgatta
     4981 cccatttgag attatcgact tcgctatctc agaagcaaca ttgcgaaata aaaaaacaat
     5041 tcgctgggtg gagaggtgtt gtctagactg gtatgtccat aacaacttgg aaactgtcac
     5101 agcgatacag gactatttgc ttgccaagaa gagttggaca aggaaagaaa ctgacacgcc
     5161 ggacccaaac tacccaccac cctactagaa ggaggtgcca atgaagattg gagaagttca
     5221 cgatgtgata gatgagatgt gtttgaaaca ccaggtctat ctgtggcgga caaagcataa
     5281 ggtcatggta aagaacgaga cggtgccacg ctacattact tgttgccctg aatgcaccag
     5341 agagaagatg aacgagcaac agttgagaga ggtgggccaa gccttggaag ccgagacatg
     5401 ggctagttcg tacgacatat tcgctaagaa gagcatgata ccgaaagaac tgaaagatgc
     5461 atcttacaag acctacacaa tcaccaacag aatcgaggaa gaagcgaaac agttcgcttt
     5521 aaggctgaat gaattttact tcaagcacca aggaaaaggg aacgctatta tccaaggtaa
     5581 gcctggtatc ggcaagagtc atctgtctat cagcatcgct agaaaattga atatggactg
     5641 gcggtcaatc tctgaaccga agagtgtgct gtttatctcg gtgccaaaaa tgtttcaacg
     5701 tatccaagaa gggttcggtt acaaagatgg aaccagtgcc caacagatga ttgacatgct
     5761 tacaaaagct gactatctct ttctggacga tttaggaaag gaatcgacat ttggcagaca
     5821 gaccaaggag gcgaacgact ggaagcagaa tatcctctat cagattttgg atgaacgtga
     5881 tacaaccatc atcaacacta acctgacagg ggagcagatg cagaaagtgt atgaccgctc
     5941 acttgtcagc cgaatcatga agggcgcgat gaacaatgtt tttaagtatc cagataatgc
     6001 acagagtaga cgagagttac cattttagga gggacaatgc aagaaaaatt aaaaatgatt
     6061 gctgatcacg aagaaaagta cggtcagatt ggcgatgagg tcagagggct attgttgcaa
     6121 cagaaacacc acattatcca gaagaagcta gatgagtggg ctggttggtc tgagattggc
     6181 ggaaaggtgg agttttgatg tttgattatg atacatggtt gagcacgcca ccagagccgc
     6241 cagttgacgt ctgggaaaca agcgaagatg aggatagtgc ctatgacgaa tggaaagaca
     6301 atgtagccat gggctatgag tattagaaac gaaagggaaa attatgacat caaaccaatt
     6361 aatgacacag cacaataact tttttaaatc agaggcggta caacatcgct tacaagaggt
     6421 cgtcggaaaa cgttcaaatc aattcgccac gacaatgctt tcgattttgc gcgataacga
     6481 tatgctatcc aaagctgaca gcagttctat tttgactgct gctctaaaag ctgtatcttt
     6541 aaatttgcca attgaaccaa gtctcggctt cgcttatgta gtgcctttta acaatcgcaa
     6601 aaaaagaata atcgaagcgc aatttcaatt aggttacaag ggtttgattc aattggcaat
     6661 gcgtagtggt cagattacca aattaaatgc aggcccaatc tatgaagggc aatttaaatc
     6721 cttcgatgaa gtcacggagg agctggatta cattaaaggc tacaagaaaa acgaaaacga
     6781 gggcattaca ggatactttg catatttcag gctttcaaac ggatttgaaa aacgaatctt
     6841 ttggactctt gaacaagtca aagaacatgc taaaaggtat agccagtcgt acaaattagg
     6901 ctacggacct tgggtggata attttgatgc tatggcaagc aaaacagttc taaaaagcat
     6961 tctgtcaact tatgcgccgt tatctacaga aatgcaagaa gcaatatctg ctgataacga
     7021 tgatttgaac tttaatcaat ccgatgaaat caaggtagcc gaaccagtca acgcagacca
     7081 acagttgctt gatgacttga tgtctgttga tgttgaaaca ggcgaaattt tggaagaggt
     7141 aagtgagcta aaagaaaatg gggagctgga tttgaagtat gaagacccta acgcaagata
     7201 attactatga tgacaaggat tacatgtcag tatcacgctt taaacagtat cttgagtgcg
     7261 aggcgaaagc cttggcactc gatactggaa aatggattga cgaacgtgac cggaaaccgt
     7321 tggtttttgg gaattacgtc catagctatt tcgagagcgc agaagctcat cagaaatttt
     7381 tagaagagca taagtcggat ttgttttcta gtcgcaagcc gtatggcctg cttgctgatt
     7441 acaaattagc agataaggtg atagcaacct tggaaactga tgagctgttc aacaacctct
     7501 accatggcag aaaaggagac cgggtagaga aagaaatgat tgtgactggc acaattactg
     7561 gtgtcccatt taagggcaaa atcgactcta tcaaccacac tagaaattac atggtggatt
     7621 tgaaaacgat gaagacaatc tacggtgaag agtggtgtca ggaactaaag aggaaagtac
     7681 ctggagcgat agcgaatatt atcaattatc attaccatgt tcaaactgct gtttaccgag
     7741 aattgctgaa gcaaatgaca ggacgttcat ataagcctct aatcgtggct gtgagcaaag
     7801 aaaacgagcc agataaggaa atattaagcc ttgacgaaga aacgctctca gagggcttag
     7861 aattcgtttc tgagcgtgct ggtcatgtat gggatgtagc aactggaaaa gttggaccga
     7921 ttaagtgcgg caattgcaat tattgccgaa gtaagaaaaa gctgaatcgc attgtatcga
     7981 ttcgtgaatt attagagatg tgatagcagg agaaaaaaga tgtttaaaac gagtgactta
     8041 cttaattatc gacaactttg gtggcttgat aaatttctta ttggacataa aggttttatc
     8101 gccggcggat gtttcaaaaa tattttcaac aatgaacgtg tcaaggattt agatattttc
     8161 tttgaaaacg aaaatgattt tttggaggca aaaaaatact acaaaaaaca agcgaaggaa
     8221 aatcctactg attggaaatt ttcatacgag aacaaaaatt gttggtcgat ctattcagtc
     8281 aaagaaaaag tccgtcttga acttattaga aatacatatg gaacacccaa aaatgttatt
     8341 tcaaattttg attttacaat tacaaaattt gcttactaca agaactatga aaatgtagat
     8401 gaagatgatt atatggctgt ttttgaattg ttatttcatg aagatttttt tgagcatcta
     8461 cacacaaaaa gattagttgt agatgataga ttaccttatc cggttagcac ttttaacaga
     8521 ctaatgagat atgcaaagta tggctatcaa ccatgtagag aaacaaaaat aaaaatagtt
     8581 acaagtttag cagagttgaa cccagataat caagaggatt ttgaggaaca actcggcaaa
     8641 agtttatatg aagggttaga ttgaaatgat tgaatttgca aaagaagtag gaatggctat
     8701 cttgtggctc atgctgggct atctagtcgg tgagagtagc aaccgaaagg ataagtcaga
     8761 tgactaattt tgatgaaaaa ttgaagcagt tagaggaaga gtctatagct gaattttctc
     8821 tggtagctgg aacgattgac gaagccgggg cactgctcga attggtcaaa agtaacggca
     8881 tcaaatggtt cagcggagaa ccaattgatt atatgtctga atgtatttat aaaaaaatgc
     8941 aaacataccc agaaaaaaga tttgtcctaa atttccgaaa tggtttcgac ctgaagaaac
     9001 aaaggacaat cttttgtaca tgggaacata gataacgtgc cgtgaaccac gataaaagcg
     9061 aactagaaag cgtgtcaatt ggaaacaatc agttgacagt tggacgatag cgactgcccg
     9121 tatttagcca aactcacata atggcagtcg ctggatttta aaggaattac aaaaatgaaa
     9181 aaacagcaat tttaaaaacg cctttcacac ttgtgacaag tgaatcagaa caaagtatgg
     9241 aaattattgg cggtgggcta tggaacatca aagcagagtt tgtagagcga gataatcaaa
     9301 tatcgctaga tgaaaacgga gatatgttcg aaccagaata tagactagtt ttagaagccg
     9361 agtatcctga taagcttatt ctcgatggtg cttatatagc aaaagagatt ggcaaagata
     9421 ttaaggaaat ccaaacatta tttgagttca tcgaagaaaa caaaaagaat ttgtttgatg
     9481 aacttggatt tcacggagtc attgtatgag gttgattata ccaattgaac ccaaaccaca
     9541 gagcagacca agggctagtg tgcgaggcag acatgcgacg gtttacgaag acggaaagat
     9601 ggtcgcttgg aggaagaagt gcaccgaact tgttagacag ctgtatgacg gaccgtattt
     9661 tgacggacca atcaaggtgg acatgacatt ctacatgcct gctccgaagt ccatgtctga
     9721 accgcctaaa ccacgatcta aagctaagaa ggtgcaggaa tataatgatt ttgtcaatgc
     9781 gcgaatttat gtagacaaaa agcccgactt ggacaattta gaaaaggctg tttatgacag
     9841 tatcagtaaa gcaggagttg tctgggctga tgacaatatc attgtcgagc atacaacgag
     9901 aaaggtgtac agtccgagac caaggattga aattgaattg gaggagatta gttgaaattt
     9961 gagttattta acgaccattt tgaaaatgcg aagcggtaca acattccacg ggcgcagttg
    10021 attattgcgg atattcctta caatcttggg aacaatgcct atgctagtga cccaagatgg
    10081 tacaaggacg gcgataatgc caaaggcgaa agtaaattag ctggcaagtc attttttgac
    10141 acggacaatg atttcaaaat caataatttc tttgattttt gcagtcggtt gttgaagaaa
    10201 gagccgaaag aaaaaggtaa ggcgccagcc atgattgtat tccatgcatg gcaacagcga
    10261 gatatggtta tcgagtgcgg caagaaacac ggctttaaca atgcctatcc gctatatttt
    10321 actaagaaat ctagcccgca agtcttgaaa gcaaacatga agattgtggg tgcggtggaa
    10381 gaggctacgg tattgtatcg tgataagcta ccgaaattta acaacaacgg tgctatgata
    10441 ctcaatcatg cgccgtggga gaaggatagc tcatatccag ttatccaccc aacgcagaag
    10501 ccgattcctg tgctgaaacg gttgattgaa atctttacgg atgagggcga tgtggtaatt
    10561 gaccctgtgg caggaagtgg gtcaacacta agagcggcaa tcgagatgaa ccgctcggca
    10621 tatggtttcg aaatcaagaa ggatttttac aagaaggcaa aagagcagat gttgtctagc
    10681 taccagccca gtttattttg agagggtgga gcagatgacg atatatgatt ttttggagga
    10741 aacagatgaa aggcattaaa gtaattgata ttggttgcga gccaaaagaa actcaattcg
    10801 gcacatgcga actttgtttt agttatggtg tcgcagacaa tccatacatg attttagaat
    10861 ttccggacgg aactcaagta acacacgata cttactattg ggattggggg ggcgactact
    10921 gggaatacag tgtagccaat gttgttgatt tctctgcttg gttaagtgag caagagttat
    10981 cggatgagga agttgaagca ctcaaaggag atggtacaga tgtcctgatt agacttataa
    11041 aagagtataa ctaccaaacg gaggaaacag atgaataagc aggaacttga aaaacaagca
    11101 gaagcgttat atacagatgt cagaagtttt ttggataaca cttttgaact aattgaccaa
    11161 atccacgaac cgcagagggt tgtggtgccg aagcatatcg ctgaaaaaat cgaatattgc
    11221 aaagatacag aaggatatgg gttgtttcat gccatggatt actgttatca gtataaggat
    11281 tctgctgatt ggctcgaatg caacgaagaa acatttgctc gtgcctggtt ggacggctac
    11341 gagattgagc aggagaagtt gtgcacggtt gagataccga acaatggcgg aacattggta
    11401 ttggcaagca tccatcatgc aataaaatta gtagatggta acaaacactt tcccggaaaa
    11461 tttaccaaag aatcgataga atacgctggc tttggttggg tgtttgattg cgacggtgtg
    11521 aaggtcgtgg aggtgagtga tgaggtctga gaaacgtagt ttagctatca acgaattaaa
    11581 agaagcgctt aaagataaat tagtgaaaaa gatttgcggt ggtagagttt gggtagtgag
    11641 cgctgagaaa caggaggtgt taaatgacga ccaacgttgt ccaattcata ccgaaacatg
    11701 atatatgcca cgagtgctac aagagaaaag caacaaagct gtgtgatttt ataattggtc
    11761 agacaggaat agcattctat cgaagtttca gtttatttaa aaatcagcaa caaaggtttc
    11821 ttacttgtga caagttgctc tgcaacagat gttccaaaag atttcacggt atggatttat
    11881 gcaaaaatca ctttaaaaaa attacaagag gcaaccaatg attaacgaaa atctaggcgt
    11941 gctactggtc gatgtgccag agccgaggtt tgctgtgtat cattttgttt acttgtcaga
    12001 attaggcttt atgattaaac cttcaagtga ctcaaaaata atactggatt tagcctacaa
    12061 atgcacccaa gaagaagcgc agaaatacca acagtttcgg tgggtagcgt tggaggattt
    12121 atgaccacag cagataaaat caaatacatc ctacaaaaga caggatggac gagagaccaa
    12181 tttgcgattg agatgggtgt gacggctcca tctgtctaca aatggctaga cggacgacca
    12241 ccgagacagc gcatgttgga taaaatagac gagttgtacg agcaaactaa agatacaaaa
    12301 tctaaagtac tagcacaacg tggaaagata cgtattttgt acccgtatta tagccatcag
    12361 cgccagccgt gggagaggag gtaaaatgcg gacaattaaa gcaagattaa agtctttgag
    12421 cctggtagat agcaaaatca aatcaaaacg attagagatt gctagtctac gctctgggat
    12481 attgaccgcg gtgcagtaca ctgacgagcc aaaaggtggc tcgcagaaaa atagctcaga
    12541 ggagctgaat gctcgaatta ttgacaggac ggaggaaatc taccaggaga tagagcgtat
    12601 ctatgacgac cgagaccgaa tggtcaaagc gattgataat cttgaagacc ctttgcagag
    12661 tcagatattg cggttaaagt atgttaacgg gtatagctgg tctatgatat acagggagtt
    12721 ccctttacat agccgtagca ctctgtttga tatgtgcaaa aaaggagaac agctactcga
    12781 gaaatctctg gactttttgg actaattcgg acttttaatg tgctattatg atagcatcag
    12841 ataccgagaa gagataaacg ttaacatttc agtcattgtc aattgactgc cagtctcctt
    12901 atacaatcga actcggtatc taaatcggga acatagctca gttggtagag cgcatgactg
    12961 ttaatcatga tgtcacaggt tcgagccctg ctgttcccgt ttaagagtaa gtgaatcctg
    13021 cggggacctt gactcggagg tctggtcaat cgcatatcgg accaagacct aatatgcatt
    13081 agtcacacaa cgaagtgtgg cttttttaat tttgattgga ggtgatgata ttggcgaaaa
    13141 caaagcgtgg tagaccaacc aagatgacgc aaggaacact acggaaatta gaagagttgt
    13201 ttgcgagagg attgagcgat gaagaagctt gtcttctagc tgatatagga accacaactc
    13261 tttatgatta ctgtaaggaa aatcctgaat tttcggagcg aaaagagttg cttaagcaac
    13321 gtgtgaaaac acgggcaaaa cttaatatat cgaaagcgat tgaagatggg gatatagact
    13381 tgtcaaaatg gtacttagaa cgtcgtgaca acgattttaa aacaaaacaa gcagtgacac
    13441 atgatggtga agtcaatatc aaccaaacca acccatttgc cgacttgaca acggatgagt
    13501 taaggaagtt gattgatgat ggatagagcg acaatcaggc aacaagcacg ttttgagtta
    13561 gctcgtcgcg atttctttta ctattgtcat ttgatggcaa gcgacttcta caaatcatct
    13621 cgaaaatact tggttgagct ttgcaatgac ttgcaaggct ttttaagtga cgacgagcat
    13681 aatgtgttgg ttatcaacga accacccaga cacggaaaat caaggacggc aggcatgttc
    13741 gttcagtggt tgcttggaaa tgacaacgat aaaaagataa tgactggttc gtacaacgaa
    13801 acgttatcaa ctgtattttc gaaaaatgtc agaaatgcta ttcaggaaac gaaggcagat
    13861 gaagacgttg ttgtgtttaa cgacattttt ccagatacgc atataaaata tggcgatgca
    13921 gctatgaatt tgtggagttt ggaaggcggc tataataact acttggctac aagtccaaca
    13981 ggtacagcga ctggttttgg tgctgatatt attatcgttg acgatcttat caagaatgcg
    14041 gaagaagcta acaacgcaac cgttttagaa aaacattggg agtggttcac gaacacgatg
    14101 ctttcacgtc ttgaagaggg cggaaaaatc attattatca tgacacgttg gcattcgcaa
    14161 gatttggcag gtaaggcgct ggttgaactt cctaagtctg attacaaagt caagcacatt
    14221 agcatgaaag cttacgacga agcgacggat acgatgcttt gtgacgaagt attgagtaaa
    14281 caagcttatc ttcaaaagac taagactatg ggagctgata ttgcgtctgc gaactaccag
    14341 caagaaccta ttgacatcaa gggcaggttg tacagtggat ttaaaaccta tgttgacaag
    14401 ccgacattta agcgtattag tgcttacact gatacggcag atacaggcaa ggactatcta
    14461 gctagttata tctacggcgt cactatggac aatgaagcgt atatcttgga cgttgttttc
    14521 acaaaggaac cgatggaagt aacagagcct ttgctagctc aaaaactagc agagtggcaa
    14581 gtcaatacat gtgacatcga aagtaataat ggcggtcgcg gattcgctag aaacgttgaa
    14641 cgtttgacgc aagatagcta ccaaaaccga tatacagttt ttaattggtt tcatcagtct
    14701 caaaataaac aagcaagaat tttgaccaat acgacctggg caatagagca tatctatttc
    14761 cctgaaaatt ggagacatcg ttggtcagaa ttatatcaaa atcttatgag ctatcaaaga
    14821 gaaggtaaga atgctcatga tgatgctgca gatgcactga caggcgtagt cgaagcaatt
    14881 aatgacaaaa ttagaactaa agccaaagtc aaacgcaaat cgctttacgg cttgtagaaa
    14941 ggagcaaaaa tggaagaagt attggtctat agtcgctcgt tgtataacga gcagaattta
    15001 gataaggata tcatttacaa attgatagta aagcatgacc agaccagtag taaactcaag
    15061 aagctaaaag attactacct tggaaaacat gctattgaga agcacacacg cagaagtaat
    15121 ctgccaaatt ttaagacggt tgctaatcat gctaaggata ttgcggatac cgccacaggt
    15181 tactttatgg gcaatgctat ccgctatcct aagaccgacg atatggacat cgaggatttg
    15241 ctaaaaactt tcgatagtgc agatgttgat tcgacagact tagacaacgc tttgaacatg
    15301 gcaatctacg gcagggctta tgagtacatc tatgtcaaag aaggtgaaaa tgagctggta
    15361 acacgtagtt tagaaccaga gaacactttt attgtttatg atgattcgat tgagcagaaa
    15421 cccttgtttg cggtctatta ctatcaaaca aaggacaacg tgacggaaga aagttattat
    15481 cgggcccagg tagtgactga gaatctgcaa tatagtatgt ctttgcggga gcagaagaaa
    15541 gtatcggaag aagggatccc gcataatctt gaaggattgc caattatcga gtatcgaaac
    15601 aatcgctaca tggtcggaga ttatgagcaa cagattagct tgattgacgc atataattct
    15661 ctgatgggta accgagtcaa tgacaaggaa caggctattg agtctatttt ggtcttgtat
    15721 ggtgcagcac ttgcggacac gccagaagaa gcaaaggaag ccatgcagat attgcgtgaa
    15781 gaaggtttgc tggaattgcc aaaagacgca aacgcagaat ttttgaagaa tgttttggat
    15841 gaagcgtctg tggaagtatt gcgcaagtcg ttgaaagagg acatttatac gtttagtcat
    15901 gtccctaatc tgtcagatga gaattttgca gggaatacat cgggcgttgc tatggaattt
    15961 aagcttttgg ggcttgaaat gattaccaag accaaagagc ggtattatat caaatcccta
    16021 cacaagcgca tacagatttt tgcggactat tacaattggt cgcagatata cgaaaatgca
    16081 aaggcaatta tcccacagtt tagccgtggt ttgccgaaga atttattgga actttcccaa
    16141 atcatcagca atcttaaaga caaggtcagt ctgcgccagc ttatttcact cttgccgttt
    16201 gtggaagacc cagatgcaga gattgaagcg cttgagaaag aaaagacgca ggaagagcct
    16261 gcatttagcc agaatttgcc ttatgaagag ggtgtgacag atggacaatc agaagtattg
    16321 ggagaagcgg aaagcccagc gaatggttca ggcgatggac caggcagagc aaaccgcaaa
    16381 gcaactcgac gaaatccaca agctagcaag taggcatatc acttctaaga tagaccagat
    16441 ttttgagagt tatcgcagag accacggact gacggaagat gaagctgcta gggtgttggc
    16501 taatgtcaag gatttatctg atattcggga gttaaaatta gctttacaga atacaacgga
    16561 cagtgaagag atacggcagt tgcttatctt gttagattcg gctccctacg cttccagaat
    16621 tgagaaatac gaggctttac agagggaggt ggataattta cctgcccgac tatataaagc
    16681 cgaaaatgag gcttctagag ccttctatga tgaatttatt ccagatgctt actaccattc
    16741 gatttttgat ttgcaacagc agtctggtgt gggattcgct tttaacagga ttgacccaga
    16801 ggaaatcaga gctatccagc aaacgccatg gctgggggcg aattactctg aaaggatttg
    16861 gggcaatacc caagccttag caaatgaact acaaaagcaa ttagcagtta gtctgttaac
    16921 aggtcggtca gctcacgaga ccgcagaagt cattgaggct caattcggaa aagggagtca
    16981 aaatgctcga cggttgattc gaacagaaac gagttatttc catgcagaaa tggaagcgaa
    17041 ggcttatgaa gaagcagatg tggaatatta tcgttttctc gcaacattag atttgagaac
    17101 gtcaagtatc tgtcgagagc atgatggtaa aatctacaaa gttagtgaac ggataactgg
    17161 caagaactat cctcctatgc atccttggtg tcggtcggat acaatagcat cagacgattc
    17221 agaatggtta gccaaagcaa ccagaagcgc cagagaccca gtgacaggca aaactattca
    17281 agtccctgcc aatatgacgt ataaagattg gtatgagaag tatgtcaaac caaaatacaa
    17341 ggcggataac ttggacattt ggaagattga acgtgccaat aaccagtacg agaaatataa
    17401 gtcaattctt ggagataaag cccctaaatc gcttgaagac tatattgatt tgaagtataa
    17461 tgataaagag ggatatggac agttacagga ccaagctaga tggataaaag cgaaattccc
    17521 gtctgagaag tcttttaatg gtcattttga gaaacacggt catgagtttc caagtttgac
    17581 taaagaagag tatcgaaaac ttgcatcgga actgattgct agtcctaccg atgaaaatat
    17641 tttgggttat gagaccgagg gtggacgtag agttcgctat gataaggctg agaacattat
    17701 cgtaataggt cggcgaaaca aaaataatca ggcgcgattg aacacaatgt taaaaccaga
    17761 tgaaggtgag aaatactatt atgaaaacta caaacgagat tttcctgatt gatggagaag
    17821 agtacattcg ctgccctgtt tgtggacgga atgtcatgtt atttgatgtg tgcgaatgta
    17881 attgggaaaa cactggtgaa acaaatattg acggcggtcc aaataagatg acgttagaag
    17941 aagcaaaaaa agcatatgca gaaggcagac caattattta aataagcact caagtagtcg
    18001 agtgcttttt tgttgcagaa aataggaggg agtatgtacc aactaagtaa aataaaaaaa
    18061 tggttcatca agactttctt atgtgttcat gatttttggt tcaaagattt agggcattat
    18121 aagattgatt tttattattg caagaagtgt ggtaaggtca ctaaaagatt ataatttttg
    18181 gaaaggagaa cgccatgaat aagcggatta aaaagaaata tcgtccaata caagctttgg
    18241 aacaatggct actggctatt tctacaacga tagacattat cgtcaacggt caaaaccggc
    18301 tatataatcg tgtggctgag ctagagaata ttatcgaacg caacgcccag gctacgaatt
    18361 cgagatttga ttatcttgaa aagaaagtag ctaacaagct gtccaagaag tcttggttta
    18421 gtcgtaaata aaggagtaaa aaatgcgtta tcgtaagaaa cctgttgaaa ttgaagcagt
    18481 tcagtggaac ggtagaaatt ttgaagatgt ttacagtctt tgtggtagaa gtcaacttaa
    18541 ctatgacgaa gaaacaaaca cgttgtacat tttgactttg gaaggtgtaa tgcgagctga
    18601 cgaaggctgt tatattatta aaggtatcca cggagaaata tatccatgta aggaagatat
    18661 tttcaatgat acttatgagg cgattggacc ccaaaatatt gttggttttc gcagtgtttt
    18721 ggattctatg tgaggaggtg gtcactcatc ttgacagcag gaaagactgc ttgaaactac
    18781 tctaaattac tttaaactgg tcgaaattga ccagttttct ttttggtcca agcattgaag
    18841 acggtaaaag ctatggaaaa acagttgggg acgactttaa aaataggagg ttcgcaatga
    18901 acgaagaaac acaaacagtc gaagcggtcg aagatgacaa acaggtagca gctgaacctg
    18961 aacaagtcac aacagacccg aaagacgaaa agaagtacac cgatgccgat gttgatgcta
    19021 tcattgacaa ggaatttgct aaatggaaag cagagcagga aaaagctgaa tcagaagcta
    19081 agaaattagc caagatgaac gctgaagaca agcagaagta ccagcttgat aagcgtgaac
    19141 aggaccttgc tgaccgtgaa gcagaaatca cacgccgaga gctaaccgct gaagctaaga
    19201 cgattttaag cgaacgtggc ttaccaatcg agttagtaga cgtggttaat cttgctgacg
    19261 ctgatagtgt acgtgattcc attgatgcta ttcaaaagac ttgggaagca gcagtcttaa
    19321 aaggtgttgc tgataagacc aaaggaagtg caccgatgaa gaaagcgcca caagaacaac
    19381 caaccgttga aaagtgggaa cgtgattttt tgaaataaga aaggaaaaat aaaatatgcc
    19441 atttgaaaat attaacaccg caacatcccg tgaaaaattc ttagggatta tcgagaaagt
    19501 tgttgctaaa aaatcttact cagctccgct tttgctatcg aatgatgcag tggaaatgaa
    19561 cgggcgttca tttactgtta caaaatctga cacaacagaa ctcaaagact acaagcgtaa
    19621 tgctgacaat gagttcgacc atgcacaaac agaagaacgc acatacactc tggaccaaga
    19681 aaaatactgg gggcgttttg tggatcgtct agatgagcgt gattcaaacg gtgaagtcaa
    19741 tgtcaattat gttgtcgctc gtcaagctgc cgaagttgtg gcgccgtact tagaccatct
    19801 tcgttttgac gctcttcttg gtaatgtcag cgataatgtc gtaccagcta atactaaagg
    19861 tgctaataat tcttaccaag ctgtcttgga tgtttctgag aaattggatg aattggacgt
    19921 agtggaaaac cgcttgttgt ttgtgacgcc agcattttat aaagcgatta agtcagaaat
    19981 tgtcaacctt ccacaaggag acaccaatca aactgtgctt tacaaaggtt atgtcggtca
    20041 gttggataca ttcacggttt acaaagtacc atctaagtac cttaaaggcg tacaagctgt
    20101 tgcgacaatc ggcggggtag tcgtttcgcc tatccaagta gatgaaacga agtataacaa
    20161 caacatccca ggtcgttttg gtgagttggt ggaacaattg ctgtatactg gagcatttgt
    20221 ctttgatttt gaccagaagt acatcatttc tattgcgacc tctaaaccag aagcgaagcc
    20281 aagcgcacaa ggcgaattaa acatccgtgc agagcagtgg gtatctggtg caacttatga
    20341 agctggtgct cgtgtacaga acgaaggtaa gttgtttgaa gccactaaga aagtaaattc
    20401 atcctcaaca gctcctggta gcgattcagc caactggaaa gagattgtct aggaggccct
    20461 aaatgcgctt taaggtatta aaagagttta ctgatgacga acttggtttt gttcatcgtg
    20521 ttaacgatat catcgaattg accaaggaac gtcataagca gatgaagaaa aacgctaaat
    20581 tgcaagacgt gaatttggct gattacattg aagaaatcaa gaccaaagga gcagaagctc
    20641 ctgcaaaata gggggcggat atgctagaag atttaaaaac tttaacaggc gagagtgatg
    20701 ataaaatcct ctcgtctttg cttttgaggg caaaaaatat cattttgact gagacaaatc
    20761 gaagtcagct tacgccagcg ctggaaggtt tgcaactgga agtggcactc gagttgttca
    20821 atcgccaagg aagcgagggc gaaacatcac ggagtgaagg gggcgtgtct gtgtcttata
    20881 aagacgggct gtcagatact attttgaatg gtattcggag tcatagactc gcaagggtgg
    20941 caggtcgtgc gtttgaagcg aaaccgactg aagccgtatc tgattcgtaa agctgtcata
    21001 gtgacgagtg atgagggtat caagaaagct acttacagcg atgtttctac tgagatacgg
    21061 gccgagatat ggcctgctag tggtcgttta caagctgaga tatacggtca gagattggca
    21121 tatattttga attgcttggt agaccgtgag actcttatag atgaaggcga tggcttttgt
    21181 atcaacagcg ataaagtaac ccataaagtc atatccataa agcgatatac aaatcatcaa
    21241 gtcttggagt tggaacaatg tcgcgattga taggtgctga taggttaatc tcgaagctca
    21301 aacgattgtc tagtcaacga cagaccgaaa tcatagcgaa agctgtacac aacgctgcta
    21361 agaatgttgt acaagctgat gcaaagttgc gagctcctgt caacgatggt gatttgagag
    21421 cgggtatcaa ggtccgcatg tccaagcctg ggaatccaag agctgaagtc gtaagtacgt
    21481 cggaccatgg tggatttgtc gaatttggaa caggtccaaa aggcgcaaca aaccatgcag
    21541 gcatttcgcc agaagtcagc gtgtcctatc gaagcacacc ttggtatgtc cacgagtctc
    21601 agattgatgc cggtccttat cgtttcccca agattggcga gttttacaag atgtttggtc
    21661 aagttgccca accgtatctt tatccagcac ttaaggataa tgaggaacgg gtcactaaga
    21721 acatcaacag atatgttaag cgaaaattga ttgaagaggt cagcaaatga taaatattaa
    21781 gcccatcatt tacaagaaat tgaaagaggt tgcggacaat gtgacagata cttatccgca
    21841 ggattgggag aatttcccgg ttatcatcta cttagaagag gaaaacaagc cttacgagat
    21901 tacagatgat acagaacaga tgtcctattt gcgctacaag gtcgatattt tccacaatga
    21961 tagtacgtca gaattagcag tagcgattga tgcgattttt gcatctctcg ggctaaaacg
    22021 tacatccagc gtggatacac ccgacccaac gcacttacga cacaaagtca tgcgatttga
    22081 ggggatttta gatctaaact cccgaatcgt ttaccaatac agaatggaag gataaaacat
    22141 gttagcgaat ggaattaaat tgaaaatgag cgagaccaaa gggtctagct atacagttat
    22201 cgagggcttg aaagaagttc cagaacttgg tattgaccct gagaaagttg agaatacgac
    22261 ccttgcggat accattaagc agtatgaatt tggtattggt gacgctggtg aattggaata
    22321 taaattcaag tatgagaatt ccaaaacaac ttctagttat cgtactttgc gtaaactggc
    22381 agatgccaag gctgttcgtc actttgaaca agaataccca gatggtacga aggtgcattt
    22441 ctcggctcaa atcgcagtca aattgggcgg tggaggcgtg aattctgcaa tcgaatttac
    22501 attgaaattg gctctacagt cagatttaga attcactgat ccagtagcac tttaaggagg
    22561 tataaatgtc aacacgtaaa ccatatatca cttggaccgt caagggaaca gactataaat
    22621 tgcgtcttag cactcgccaa gcctgtgaag ttgaagaaaa attgggcgtt aatttgctca
    22681 aaatctttat gccacaacca ggcgaacagt tcaatctacc gcctttgaag gtcatgttgt
    22741 tggttgttca aggtgctttg cagaagttcc atcatggtat caaattggat gatgtctatg
    22801 acttgttcga tgattacatt gatgaaggct acggacaaac tgaattgatg tccgatatca
    22861 tcgtaccatt gtttgaagta tcgggtttta ttcctcggaa caaggagaag gaagaaccga
    22921 cgttgacagt agtcgagtag gttctggtcc ttgttcggtc gcagaattga ttaacgggtt
    22981 ttatccaaca gcattagatg caggggtaga cccgttttct ttttgggaat acactctttt
    23041 ggaattgaaa gagttggtcg agagttacaa caggcaacaa ttccagagac agaaagaaat
    23101 tgcttcgcat aactttgttc aatcgcaaat gatagctcgt tttgtttcca tgatgttcca
    23161 ggaaaaaggt gaagcaccgg acatttggga cttctaccct actttgttcg aagaggatag
    23221 gcgacagata gaacaagctc gaattgagag agatttgata attcatcgcg aacggatgag
    23281 ggcttttgct gaaagaatga gaggaagatt caaaacttcc gaataagata acatggaaag
    23341 gaggggaact atggctacaa ccttagaaga gttgagagtt attgtcgaag gcgagattgc
    23401 tccatttcaa aaaaagatga agcaattgga atctcagatg aagcaaactc aaaacaaaat
    23461 tgaaaacaag acaaaaggtc ttagagagcg tgtaggtcaa caagctggtg gtatggcggc
    23521 tgctttgggc aaacttgcta agattactgc gttagcttac ctaggcaaga aaatgttaga
    23581 cctcggcatg tattctacgc agatggctct tgaagtgagt gcttcagtca atcaaatcaa
    23641 acggcagatg ggcgaaagtt cccaagcgtt tttaaagtgg attgataaca atgccaacgc
    23701 aatgaatatg agtgttggag aagctaccaa gtacggagct gtctattcca atctattttc
    23761 caactttatc aaagattccg acaaactgag cgcttataca ggcaagatgt tacagacatc
    23821 tgctgttatt gcgcaaggta gcggacggac catgacagat gttatggaac gtatccgatc
    23881 aggcttgcta gggaacaccg aagcgattga agaccttgga atcaacgtca atgtcgccat
    23941 gattgagtcc acaaatgcct ttaagcgatt tgcgaacggg caatcttggc aacagttaga
    24001 ctacaatacc cagcaacaaa ttcgcttgat ggctattttg gagcaagcga cagccaagta
    24061 cggcaatacc ttgcaacagt ctgtaaacgg gcgtattagc ttgttcaaat cgcttttgag
    24121 cgatgcggcg ctaaatattg gtaatgctat gttaccgatt attaatgcca tgatgcctgt
    24181 gctaaattct tttgcgatgg tactcaaaaa tgtcactgct aaacttgctg agtttatcgg
    24241 tttgatgttt aacaaaaaag ccaacgtgaa gaatagcgca atcggaaatc ttgctcaggg
    24301 tgcacaaaac gcaaatgacg cagtaggcgg tctaggcgat gccatggacg gtgtagatga
    24361 cgcgtccggt gggactgcag acaatctaga tgatactgcc aaatcagcta agaaagctgc
    24421 taaagaactt ctgggcttag caggattcga tgaaatcact accctaaatt tgaacaaaga
    24481 cgactcagac ggagctggta gcggttccgg cggagggaag ggcggcaaaa atggcaaggg
    24541 agggagttct gggaacggaa ctgacatctt acctgaaata gaattgactg atatggacaa
    24601 ccagtttaag tccatatttg acggatggga taaaacccta caacctcttt ttgattacct
    24661 ctcaaaatta aaagacctgt ttaaagacgg ctttaatatg tcgtttagag ctgacagctt
    24721 ggaccgtttt aaaaacgctt tggttggtat ctggcaatct ctaaaagaca tctttgcaga
    24781 cggaactgtc ttgcaagcag cagcaaggtt tggcgagaaa ttatcctacg ctctgggaca
    24841 aggaacggga gctgtcgcaa atgtcgtgat gggcattgca gtctttattg ccgaaagtct
    24901 agataaatcc ttaaaagaaa ctaagctcga tataaagaat tggctaatta gacaatttga
    24961 gataaaaggc gacactatca ctagtatcgg aaatttagct caggctattg gtcaaatttt
    25021 ttacgataca atcacaagcg tagcagcgac cgatatcggt tctgccatta tctcctcact
    25081 aatctatatc cggatgggga tagatgatat aaccggaaag attgaacgag atttttgggc
    25141 gttttgggag cgtctagccg tagataatca agcaggtatt acaacggcat ttatcggctt
    25201 attatcagct gtagaaccta tcttcgcgtc tatcaaggac ttgttcaaga atacctttat
    25261 cagcttaaat gcaacctatg atgaacactt aaagccgttc tttgattcgt tcattgaggg
    25321 cttcagttct atctttggca ctctgataga cagttggaac aatgatgttc aaccagtatt
    25381 agatagcatc ggacaattgt tctctgatat gtttgataac catattcagc cttttgttga
    25441 taatttccta tacgcattcg gtcaagtagt agatttattg aaagttgtat gggaagaggg
    25501 gtttttgcca ctctttgatt ggattgcagc gaacatacta ccagtacttg ttccaatatt
    25561 ccaaacactt gcagaatggt tcgtgcaagc gtggaatgtt gttttcgatg ttttaggagc
    25621 tgttttaaaa atcctaggcg gtatcatcga gtttctggtc ggtgtattta caggcgactg
    25681 ggaaaaggct tgggacggca ttgttcaagt agcaaaagga atgtgggatt tactgtcgtc
    25741 tattttcatg ttcgtttgga acgtcattct atcattctta aaaggtgtct ggaataccat
    25801 tgttgcaata ttacaggctg gatgggatgc tattgtccgc atcttccaag gtttaggtaa
    25861 atggtttggt gaccgctgga aagatgttga gaatatattt tccaacgtag gtagatggtt
    25921 tggacagaag ttttctgagg catggaatgg tattacaaat gctttcagca atgttgtagg
    25981 atttttccgt ggcatttatg ataacatcgt cagttggttt agcaacattg gtggcgctgt
    26041 agcaactgct gtttctggtg catttcgtta tgcgatgaat ggtgtgtttg ccactattga
    26101 gaacgctgta aatggcttta tcggtatgat taacggtgtt attggtttaa tcaataacat
    26161 tccaggcgtt agcctaggta gcattggcta cgtcaacctt cctcgtcttg cccgtggtgg
    26221 tattgtggac agccctaccg ttgccatgat tggggaggct ggtaaagagg tagttatgcc
    26281 gttggaaaat acaggcttcc tgcaaacaat gggacgagtt gtcggcggtg cagttgttaa
    26341 tgctttgggc ggaggtctac cgcaatcgtc tggattgcca agtggtgaca tcgtcatcaa
    26401 tatcggcagc cgagaattcg gacgctttgc gattgatgag attaacaaag cacaggcgca
    26461 agctggcgaa ctgttattaa acatttagga gggaaacatg agtcgattga ttatcaatgg
    26521 agttacagta gtacctccta aatcttttca agtcgctatc aatgatgtag atggcgagac
    26581 aggtcgaaat gctaacggag acatggtcag ggataggatt acaaccaagc gcaaattgga
    26641 atgtgattgg gggatgttga cacaggctga gatggctcag atacagaatg ctgttcagcc
    26701 tgttttcttt gaagtatcct atccggaccc tatcttaggg cagacctcta aaacattcta
    26761 tgttggtgac agaacagcac cagcatattc atttgatgaa aaactcaaac catggagcgg
    26821 tttaaaattt agtttaatag agaggtaagg tggttcacac ggtaacattt aaccaagcta
    26881 tgttagctaa agatagggtg tttgctattc gtgcaggcgc ctatacttct agcgacatca
    26941 aagaagctag tttcaattat ggatatatca gcggcgatac tttaaaacct ggcggaacag
    27001 ttgctggttc ggctaaattg acctttacat ctatcatcac tagctttaac aaattggata
    27061 aagtttatcc agagatagga ctaaaagttg gcgattcctt cgagtgggtt gcaatgggtg
    27121 agtattttgt caacgatatt aacatcgacc gcaacaggaa taccacagaa ttagatctga
    27181 tggatgggat gttcaagctc aatcaacctt atatttctga cctgacttac ccggcacaga
    27241 ttagagatgt cattcgcgaa atttgtgtaa agacaggagt agagttagaa acagatgatt
    27301 taggtttccg agcgattcag catcatatcc aatcaaaagc ggataaaaag gacattactt
    27361 ttagagaagt actaagtcaa gcgattcaat tgcttggctt ttctgctttt tttaacagaa
    27421 aaggcaaatt ggaaattcgt gggttgactg aatcaaatat cacaattact gctgataatt
    27481 attttttgca cggcctgact aaaagcgaac ttatgtacca gattgcaggt atcacttgca
    27541 agaaagacaa agagacgtta acagttggat tgcgaactgg tcgctcttta gagctagaaa
    27601 atagcttcat gatacagaat atcttagacg atttgtatta tgatttgaaa gaaatcaagt
    27661 attatccatt ttctcttgat tggcaaggac acctaaaact ggatgtcggg caatggatta
    27721 cgttaaaaac aaacaaaaac gagactttta aagtccctgt actgagtcaa tcttttaatt
    27781 tcaagggcgg tctaaaatcc aaaattagtg cagacagcaa agctggtaat gatactcagt
    27841 attcttataa gggattttta ggcaagcgca tcgagcaaat gtctactgag atcgaagcag
    27901 aggttcaaca gcaactggaa tataaggata aggaattcga tgaaaaaatt aacaaagcca
    27961 aatccgaaat caatgacggt atcgagcaag cccaagctga ggctgagcgg tatgctgacg
    28021 ctattaaaca ggaaattgat actgaaatcg cccaagtcaa ccaatccatg caatcccagg
    28081 aacaggaaca cgacagagag gttgcgaaca tcctgtctaa aacccagtct gtcgagtcgc
    28141 ttgccaacca ggccaaggca gatgcggcaa acgccatcgc tagagctaac caggtcaaga
    28201 ccgaagctat cgcagatgca agagcgcagg ttgcgaccgt taatcaagcg ttaaatactg
    28261 ctaagactga gctacaatca gcaatcgcta gtgcagacca aaaggcgagg gatagccaag
    28321 caagtgccac agctttgcgg aatgatctaa acttgcaagc gagcaagatt ttggcacaag
    28381 cacaagcgca gacggcattg actaatcgtg tgacgaccgt tgaaaccttg gcagatggta
    28441 ccaggtcaac agtcgcagag ctgtcacgaa ccatgcagga agctacgcag aatattgcta
    28501 gcgttaccag tcggacaagg acagtagaag acactctgag ccaaacgagg actcaatacg
    28561 aagctctgac gcagaccgtc aatactcaga caggacagat tgagagtatc aatcgaaaga
    28621 ctgccgactt gcagagcgga attgatggcg tgacagagcg gtttgagaat ttgcgggttg
    28681 gtgggactaa cttatttaaa aatagtgatt tcagtcaagg ggaaaaaaat tggcataaat
    28741 tgcctgaaat ccataatgaa gctacaggta agtatgtaag attgccagct catctttgga
    28801 aaatggcaca atttgttgaa gtcgagcaag gtgaagacta tgttattagc ctttatgcaa
    28861 agaaaatatc agaaagcagt tctagtccga gattaaatat aaaatttgat tcgttacata
    28921 acgaagatac tgattatgtt gaaattacaa aaactgactg gaaacgattt atttttaaat
    28981 ttcgtgcaaa aaaa
//
LOCUS       DASGBY010000009        28545 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.009, whole genome shotgun sequence.
ACCESSION   DASGBY010000009 DASGBY010000000
VERSION     DASGBY010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28545
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.009"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            14..865
                     /locus_tag="U1396_000319"
     CDS             14..865
                     /locus_tag="U1396_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM5341539.1"
                     /translation="MKLKKLFSLATAALSVGVLVACGNSSSSSDSSATTVRVGVMSLS
                     DSEQARWDKVQEILGDEVKLEFTQFTDYSQPNKAVAENEVDINAFQHYNFLNNWNQEN
                     GEDLVAIADTYIAPIRLYSGTADGKNKYTKVEEIPDGAEIAVPNDPTNESRALYLLQA
                     AGLIKVGVSGTELATIADITENKKNLKITELDASQTASSLSSVDAAVVNNTFVLEAGL
                     DYKNALYKEQKDENSKQWYNLIAARSDWEKSEQAAAIKKIIEAYHTDEVKKVIEETSD
                     GMDEPVW"
     gene            1022..2389
                     /locus_tag="U1396_000320"
     CDS             1022..2389
                     /locus_tag="U1396_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEM5341540.1"
                     /translation="MADSKVQAFENDAIIQNYFEKLKVLISKKSIFAQQIGLLDVATY
                     LKDMFEEAGADVVLDDSYAAPFVMATFKASVPDAKTLIFYNHYDTVPADADQVWEKGN
                     PFELTISDGYIYGRGVDDDKGHITARLSALKKYQARQNGDLPVNVIFIMEGAEESASV
                     DLDKYLSKYKEYLIGADLLVWEQGHRNSLHQLEIAGGNKGIVTFDLQVKSADLDIHSS
                     YGGVIDSASWYLLSALQSMRAADGEILVDGIYEQVQEPNERELALVEEFALATSQSMT
                     DIYGLTLPTLVEDRREFLKRLYFEPSITIEGLSTGYLGQGVKTIIPAQASAKMEVRLV
                     PGLEPHDVLDKIRQHLDKHGFDKVELVFTLGEMSYRSDMSHPAIVNVIELAKKLTPEG
                     VAVLPTSPGTGPMHTVFHALGVPIAGFGLGNANSRDHAGDENVSIADYYSHVELVEEL
                     IASYE"
     gene            2382..3446
                     /locus_tag="U1396_000321"
     CDS             2382..3446
                     /locus_tag="U1396_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM5341541.1"
                     /translation="MSKEMIKLDNIDVTFQQKKRTIEAVKDVTIHINQGDIYGIVGYS
                     GAGKSTLVRVINLLQVPTAGKITIDEDVIYEGEKVTLTPTQLRSKRREIGMIFQHFNL
                     MAQMTAEENVAFALKHSGLSKEEKKEKVAKLLDLVGLSDRAENYPAQLSGGQKQRVAI
                     ARALANDPKILISDESTSALDPKTTKQILALLQELNEKLGLTIVMITHEMQIVKDICN
                     RVAVMQDGRLIEEGSVLEIFSHPKEELTQDFIKTATGIDEALVKIYQQDIVKNLPENS
                     ILVQLKYAGSNTDTAIVNDLYKFYQVSANILYGNIEILDHTPVGEMVVILSGEPGQLH
                     RAIEAVTEARVEVTILKGAN"
     gene            3447..4139
                     /locus_tag="U1396_000322"
     CDS             3447..4139
                     /locus_tag="U1396_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004255001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5341542.1"
                     /translation="MLEWIQTNFPDIYKLGWDGQTGWLTHFNLTLYMTFVSFAFGGFM
                     GLVSGLFLVLTGPRGVIANKTAYWILDKVASIFRAIPFIILLAAIAPFTKIIVGKTIG
                     TEAALVPLALSVFPFFARQVEVVLSELDRGVIEAAQASGATFWDIVLVYLREGLPDLI
                     RVTTFALVSLVGYTAMAGAIGAGGLGQVALSYGYLRYNNDVTFLATLLILVIIFVIQF
                     IGDFLTRKISHR"
     gene            4321..5025
                     /locus_tag="U1396_000323"
     CDS             4321..5025
                     /locus_tag="U1396_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B3/4 domain-containing protein"
                     /protein_id="HEM5341543.1"
                     /translation="MSQFVVDSSFWSLFPDAKIGVLLLKDYKTPAQSPDELVKLLEES
                     NGIAQKFLTEDTFSENEVIRTYRQAYQKFKTKKGASSSIEALLKRSTSDRPVTTISPL
                     VDIYNAASLRFGLPCGAEDLDTFVGNLQLTVTEGGDEFYLIGDETNNPTLPGEVCYKD
                     DKGAVCRCFNWRDGERTMITDETKNAFLVMELVNSDRVEDLENALDFISQQAETFLGV
                     VPEKYLLDCDRPGIAL"
     gene            5292..5771
                     /locus_tag="U1396_000324"
     CDS             5292..5771
                     /locus_tag="U1396_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 family protein"
                     /protein_id="HEM5341544.1"
                     /translation="MWFFLSADRVFLVFHLKVKNSYYKERRPMFTLEAINHGHEQFTG
                     PDFPKLIAYFKDLGMVENIVDIQSGQVTYRSQTGQTLEKTGYQVTIPVSDQANLDQFV
                     TILRNHQAGQTDFPTFCQETAEAGVYKWVIDLEAMTCSYLDQAEQAVFVEAVPSVEN"
     gene            5977..6894
                     /gene="glyQ"
                     /locus_tag="U1396_000325"
     CDS             5977..6894
                     /gene="glyQ"
                     /locus_tag="U1396_000325"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018163989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEM5341545.1"
                     /translation="MSKKLTFQEIILTLQQFWNEQGCLLMQAYDTEKGAGTMSPYTFL
                     RAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLER
                     LGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAE
                     VTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEVSDQDMLLENFT
                     KFEKEAERALEEGLVHPAFDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVA
                     KTFVAERKKLGFPLLDEATRAELLKEDAE"
     gene            6894..8930
                     /locus_tag="U1396_000326"
     CDS             6894..8930
                     /locus_tag="U1396_000326"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEM5341546.1"
                     /translation="MTKNLLVELGLEEIPAYIVTPSMHQLRDRMATFLTDNRLAFDSI
                     DVFSTPRRLAVRVRGLADQQTDLTEDFKGPAKKIALDADGNFTKAAEGFVRGKGLTTA
                     DIEFREIKGEEYVYVTKHEAGQPAKAVLAGIPEVLKAMTFPVSMNWASNKFAYIRPVH
                     TLTVLLDDEALDMDFLDITSGRISRGHRFLGNETEIASADSYEADLRAQFVITDPAER
                     QNMIVEQIKAIEDKHNVTVEIDEDLLNEVLNLVEYPTAFMGSFDTKYLEVPEEVLVTS
                     MKNHQRYFVVRDKAGKLLPNFISVRNGNDQYLDNVIKGNEKVLVARLEDGEFFWREDQ
                     KLKIADLVERLKVVTFHEKIGSLYEHMERTKVIAEKLADLAGLSAGEKADVARAADIY
                     KFDLLTGMVGEFDELQGIMGEKYALLAGEKPAVAAAIREHYLPNSAEGELPESKVGAV
                     LALADKFDTLLSFFSVGLIPSGSNDPYALRRATQGIVRILEAFGWEIPLDQLIAELYS
                     LNFASLTYDNQPAVMDFIRARVEKMMDKTIPKDIREAVLASSTFVVRLQLAASSAIFQ
                     KAKEADYKEAVENLSRVFNLAEKAEVTAIDEALFENDQEKALAAAVAGLELTEDMAGN
                     LDKLFALSPVIAAFFDNTMVMVDDAAVKANRLTLLKALADKASAVAVFNLLNSK"
     gene            8940..9197
                     /locus_tag="U1396_000327"
     CDS             8940..9197
                     /locus_tag="U1396_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 family protein"
                     /protein_id="HEM5341547.1"
                     /translation="MEQAKIDRINELARKKKAEGLTEEELQEQAALREEYIEGYRRSV
                     RAHIEGIKVVDEDGNDVTPEKLRQVQREKGLHGRSLDDPNS"
     gene            9336..9707
                     /locus_tag="U1396_000328"
     CDS             9336..9707
                     /locus_tag="U1396_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341548.1"
                     /translation="MKKLLYFLLFLTYIACAYSTIFFLPFMYFSGIVGATGVGLGLSY
                     SLHQEVKKHPEKQLSEYLPWGSKRDKIMVVTILLFSILVSFIPDVNWHRGLAILLDIS
                     YVLLWQAMLIQFLRKYYFKNA"
     gene            complement(9729..11066)
                     /locus_tag="U1396_000329"
     CDS             complement(9729..11066)
                     /locus_tag="U1396_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5341549.1"
                     /translation="MNDLTKGKPIAVILQFAIPLLIGSFFQLAYNFADSMIVGHTLGK
                     DAFASVGSTASLIFLIIGFAQGVTNGLTIISAQRFGAGDLEGLKKSFVHGLFYASLIS
                     LLLTVSALAFLKPILVLMQTPVSIIDHSHAFLTAMFGGLTFTIFYNFLSSALRSLGNS
                     KTPLLALVIACFINIGLDFFFILVMNWGVFGAGFATILAQACSVLFLIFYIIHKVPHY
                     HIGLADLKLDRGNLKKHAQLAFPMGFQASIIAIGAMTLQFMVNQLGTDAIAAQAIALR
                     TDQLAMLPMVNLGLAIATFTAQNYGAKLYDRIREGVRHSLLLSIAWAIVFAVILILGN
                     RFFSGLFLPNASQTVLDLALVYYIINGSCYWIVASLFILRSFIQGLGKGFIPTLAGFG
                     ELIFRAAVAIIGMQYFGFYGTAAANPAAWIGSIIVLIPSSIIFMKKLKAGQSI"
     gene            complement(11386..12051)
                     /locus_tag="U1396_000330"
     CDS             complement(11386..12051)
                     /locus_tag="U1396_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEM5341550.1"
                     /translation="MPNYTIGILGLGVFGTTIAKTLHNYDCNIIAIDNHEQRINHLEP
                     ILTRGIVGDITDRSLLRAAGIGNCDAVVVATGENLESSVLAVMHSKVLGVPMVIVKVK
                     GTTAKEVLLRVGADKVISPERETGISLAKQLLHRDTTSLFELEGNVSIVEFHPPVKWI
                     GKTLGELKLRQHYKLNIIGYRSGENQELNIQLTPDYVFKSDELILAVTDHNTVDHFEE
                     LTN"
     gene            complement(12063..13412)
                     /locus_tag="U1396_000331"
     CDS             complement(12063..13412)
                     /locus_tag="U1396_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEM5341551.1"
                     /translation="MSPFRIKLSPSQRIIISFLFVILTGSILLSLPISQISTSTASYW
                     DHLFTSVSMVCVTGLFTKAVAETYSTFGQIICMMLIQIGGLSLIGFIGLFALRGGRKM
                     NFINMATLQEALNRSDTKYFRNFLKSAFGFTLAVEAFGALLLSFHFVPEFGWARGLFT
                     SIFVAISAFCNAGFDNFGATSIMRYVDNPLINITLASLIIMGGLGFSVWFDLQTQIGQ
                     KRSLRKLGFHTKIVLGLTAIILTLGTLTTLLTEWNNPSTIGQLSFGHKLLASFFQTVT
                     MRTAGFASIDYTKAEPITLLLYIFQMMLGGAPGGTAGGIKITAFLTLVLYARSEILGL
                     PHTNFMGRTIDNLSIRKAFATFSVFLLMFIIGLFALALTDDRQPLLFLMFEVMSALAT
                     VGVTANLTPSLTMAGQAVIMALMFFGRIGPLSILASLSVRKLSKTESLQYAKSSMLV"
     gene            complement(13676..14215)
                     /locus_tag="U1396_000332"
     CDS             complement(13676..14215)
                     /locus_tag="U1396_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gx transporter family protein"
                     /protein_id="HEM5341552.1"
                     /translation="MNSKRQTLNFITMLAAQAVVISLIERLITPPFAFAPGAKLGLGN
                     LISLIAIFTLPTKDSLKVVALRLLISTFLGGTFSTFLYGFAGTTLSYVGMLSAKQLGP
                     NRVSPIGISILGGMLHNLGQLLVFATIARSFYVLNYLPILAFTGILSGLLVGLAATYL
                     LQKVGPLRHYHQLVLAEWK"
     gene            14398..16290
                     /locus_tag="U1396_000333"
     CDS             14398..16290
                     /locus_tag="U1396_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5341553.1"
                     /translation="MTKNIVIVGAGYAGIAAARLLGKTFKKDQDVTVTLIDKNSFHTY
                     MTELHEVAAGRVEANAIKYDLQRIFKKYPKVQLVTDKVVEIDYDKKQVVAEHQTLDFD
                     YLLLAMGGEANDFGVKGVKEHGFTLWSIEAAERLHDHMIDACYRAMREHDEAKRRALL
                     TFTVIGAGFTGIEMIGELIDWVPILAREFKLDPKEFSLKVVEATPNILAMVTEKEQVK
                     ARKYLEKKGVELVLGDGVASVQEDSLTLSSGRQIPTYTSIWTAGVQANTDASEFGIEK
                     ARAGRLVANEFMEAKGKENVYVAGDLVYFEESEGKPTPQIVQAAEQTGHTAARNIISA
                     IKGGEKHSYKGKYDGFMVSIGARYGVAFLMDKYHMSGFMAMAVKHMVNLLYFFTIRSF
                     FYMGSYVRHEFFDIQNKRNIFGGHTSGKGNLLWSVPMRVLYGSVWLYEGIKKAFGLFG
                     TTSWFGDQVVFPFPWLADPVSGASAAEAVSSASQAATAAAEAAEPIFGLSYAYGEAPM
                     AVLDKMPDWFATIMEFMMPNQEVALFMQKFMTVAEIGIGLALIAGAFVWIVSAATVAL
                     VVMFSLSGMFYWVNIWFIPAAISLMNGAGRAFGLDYWIMPWLGRFLDKKIYGKPKHIY
                     RIKYKK"
     gene            16309..17298
                     /locus_tag="U1396_000334"
     CDS             16309..17298
                     /locus_tag="U1396_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM5341554.1"
                     /translation="MVHQIWNTYPEIERGLEEVKSIILSEMMVLHPAVTSKIVEYVEA
                     PGKYLRAGLCLLFAQMTEGKISRSKLYFAAHLEVLHLATLIHDDVIDGADKRRGVTAA
                     HQQFSNRIAIYTGDYLLAYSSRLFGKGLRLLEVSRDDLDLGNDKLMETILRGELSQLL
                     NQFDANMTMKAYLKQIQGKTAFLFGLACQLGSFVPGQSRKDSSMAFRSGQALGMAFQL
                     RDDLIDYQLDVAESGKPRLQDIQNGIYTAPLLFAMREDKSIQQQLRAYIQSPTAEGLE
                     ILTDRIFATHAIAKTEKLIVSYLEKMMNFVDRIPQLSTASMQNLVAIVFSHYF"
     gene            17377..17856
                     /locus_tag="U1396_000335"
     CDS             17377..17856
                     /locus_tag="U1396_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEM5341555.1"
                     /translation="MKTTKVVLKSLVVLGAVFALAACGSKQESASTSSSTKETVVLKD
                     GTYKAESSKDDYGYKIVHTLTVKDGKISESKFDYEAEDGSLKSANEEYNKKMKDKAGV
                     SAGEAIEQLNAALVEKQELSAVEVVSGATHTSEDFKKSTEALLAAAAEGKTETVKLD"
     gene            17934..18983
                     /locus_tag="U1396_000336"
     CDS             17934..18983
                     /locus_tag="U1396_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM5341556.1"
                     /translation="MKKIASLLFVGLLMVLLVACGGKQNESLSVVKTPLTRSESLLHT
                     VVQLSIYHENQEEAMDEAVSYIKEMESLLSTNLEGADVYRINQAAGKEAVKVDERTFE
                     VIETAIDMSKESQGLFDISIGAVSNLWKIGDEDARKPSDEEIKAALPFINYKDITLDK
                     EKKTVFIKEGMTLELGAISKGYIADKVRELFASKGITTAIINLGGNVVVMGDSPTTQN
                     GWNVGVQDPDQVRGSTVGSVPGTHDSVVTSGIYERYLEVDGVKYHHILDPKTGYPVEN
                     DISGVTVFSKTSIQGDALSTTLFLLGVEKGLDFINQIDGVEAVFIDKEQGVHLSDGLK
                     ESFELTNEEYHLVNE"
     gene            18976..19932
                     /gene="menA"
                     /locus_tag="U1396_000337"
     CDS             18976..19932
                     /gene="menA"
                     /locus_tag="U1396_000337"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM5341557.1"
                     /translation="MNKSTKGLSLPVFLEFVEMKTKVASVFPMTLGILWSLYRYQAFN
                     WLNTLLFIIAVLSFDMCTTAINNSMDYHKAKDEAYRQESNVIGKFSLDFRQMIGIVLA
                     LLIFSLLVSLLLVWRTSWLLLPMGALCFLIGIFYTFGPIPLSRMPLGEVFSGVTMGFG
                     IFFLAVFIQQPDLLLTSQVSGQWMTLQFSWIKIIEIIFMSIPLVTLIANIMLANNTCD
                     LEEDIRNHRYTLVYYIGKKNALKLYFVLASLPWLLWIIYCLIGFLPIWALAGLIGVWP
                     AYKSLETFLKKQVKRETFIEAVKSFVLFALLYVVILALALIF"
     gene            complement(20240..20668)
                     /locus_tag="U1396_000338"
     CDS             complement(20240..20668)
                     /locus_tag="U1396_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HEM5341558.1"
                     /translation="MTFKSILKQLKLFDYILIGFTLVLSFLPAIFTYTHLTTDTNEAK
                     TIAYVRINGEVVDQFELSKDTPHQEKTYYPNEGQYNIIEVDGERIRVKEDNSPDQIAV
                     MTSWISQPGQLSVCLPHNLLIEIKSVGGESTDEEELILPL"
     gene            complement(20721..21068)
                     /locus_tag="U1396_000339"
     CDS             complement(20721..21068)
                     /locus_tag="U1396_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341559.1"
                     /translation="MNVDKPKFILTLIVLSYTAICSLYIHSYLTGDNPPIFILLFTML
                     PILNSDWQTSGPEANAFQKAIYLYHKPLLWFLFAGFALTFSIVFFAGKIQPLHAGFWG
                     MLAILLFFRQLKK"
     gene            complement(21058..21402)
                     /locus_tag="U1396_000340"
     CDS             complement(21058..21402)
                     /locus_tag="U1396_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5341560.1"
                     /translation="MNKPFTPKQTCRFFVLFYALFSAFFIYSYMVNEPINGSFLLMLP
                     TIQIIKSYQTAEEKRYFIIQAIFALFAMTLTYSVGIWLGHVKPLILILPAGFAAAILY
                     RIYFKKEKPDER"
     gene            complement(21415..22497)
                     /locus_tag="U1396_000341"
     CDS             complement(21415..22497)
                     /locus_tag="U1396_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
                     /protein_id="HEM5341561.1"
                     /translation="MKKETFQDKLIKRFYGIAGPLDEFRQKEAFRLGNTCFILLFWGT
                     MAITLLALALSKRYPEVVAYGYPTALLLSTLSASMYMTSKMRHSQVDSLDVEELTTKE
                     QKKFKGASIKFALYFTCGMYIWNTGFDAWMEGLNPLDHLFDLRKFLAACLVGVFMGIY
                     IEITLRKRMKKAEKLTVSSAIAKEEPKWIKNMIKRFYGIRGPLDEYRRAEADAIGGQA
                     FIYYFYFLALGNAIAYFLAYRYPLEVAAYYPMIIAFFSIILIGIVNMRTLHADLPQYD
                     MDELSPEEKQGQTLNPLVLGLGVALLSSLFAGLADLFSLQLPLLASIFHVKSLLFGGM
                     MGLFASLALSAIAYLQKLEADSVKKK"
     gene            complement(22508..22708)
                     /locus_tag="U1396_000342"
     CDS             complement(22508..22708)
                     /locus_tag="U1396_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341562.1"
                     /translation="MKKNIRQALISTLIFIPLFVLFQLWGNSGAEILHTISQAKFWLQ
                     LLIAGTIYFLGFVYILPLFDQK"
     gene            complement(22724..22912)
                     /locus_tag="U1396_000343"
     CDS             complement(22724..22912)
                     /locus_tag="U1396_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341563.1"
                     /translation="MNRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLC
                     INLAKALQTDLNSLFWNE"
     gene            23183..24133
                     /gene="rsmH"
                     /locus_tag="U1396_000344"
     CDS             23183..24133
                     /gene="rsmH"
                     /locus_tag="U1396_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEM5341564.1"
                     /translation="MTKEFNHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQ
                     LTDGGHLYAFDQDQTAIDHAHIRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGI
                     CYDLGVSSPQLDERERGFSYKQDAPLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYG
                     EDKFSKQIARKIEQARAVKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEV
                     NDELGAADESIQQAIDLLALDGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPD
                     DLKAPLELVNRKPILPSQEELEANNRAHSAKLRVAKKVHK"
     gene            24144..24467
                     /gene="ftsL"
                     /locus_tag="U1396_000345"
     CDS             24144..24467
                     /gene="ftsL"
                     /locus_tag="U1396_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEM5341565.1"
                     /translation="MLQEKRREATMRVIGDKIRTFTRVEKAFYSSIVLSGLALAIGII
                     FMQTRLLQLQSGMAKVNQDISQKQIEINDAKQAVNELTRSARLMEIAEKAGLTFNNDN
                     IGVAE"
     gene            24467..26716
                     /locus_tag="U1396_000346"
     CDS             24467..26716
                     /locus_tag="U1396_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5341566.1"
                     /translation="MPRRNNKLLRYVLKKRYVPSKNRRRVGQSLLLLTVFVFFLFLIN
                     FAYIIGTDSKFGVDLSERADAVHQREVTVQAKRGTIYDRTGIPIAEDSTTYTVYAIID
                     TEYVSELKKVLYVQSSQFSKVAEIFKKHLGMETAYVMEQLNQPELKQVYFGTLGKNIS
                     YSTMSSIQEEMKAAGIEGIAFNASPGRMYPNGNFASIFVGLANPVENKDGSHSLQGVS
                     GLEYYLNDILAGQDGKVIYEKDSQGRVLPGTEKVETETVNGQDVYTTISADLQRSLET
                     NMNTFFDNAKGRYANATLVSAKTGEILATTQRPSYDSDTKEGLGQEGLLERSLLYQEA
                     FEPGSTMKVLTVASAIDNGTFDPNAYYTNNEYVIADAKINDWTLNAGYSAVTLNYAQG
                     FSLSSNVGMTLLQQQMGDEKWLNYLTKFRFGYPTRFGMGDEAPGMVPEDNIVSIAMSS
                     FGQGISANQAQMLRSFTSIANNGIMLEPKFISALYDPNTDTARVSSKEEVGNPVSEQA
                     ADDTLRYMINVGTDPVYGTLYSHDLQGPAIQVDGYDIAVKSGTAEIASEDGQGYIKGA
                     YINSVVAMIPAEDPEFIMYVTIRQPEVLNVLSWRDIVSPTLKEAMLLKDNLNLDSPAP
                     ALARVANETEYQLPDLIGKAPGESAEELRRQLVQPVILGNGAEIKKVSVEKGSKVIAN
                     QQVLLLTNKFEEMPDLYAITKENMDIFAEWTGIEVTYKGTGSKVVDQSVEVGTALNKT
                     KKITITLGD"
     gene            26718..27716
                     /locus_tag="U1396_000347"
     CDS             26718..27716
                     /locus_tag="U1396_000347"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEM5341567.1"
                     /translation="MQFALMSGLVAFLATVLLIPRFITFYQAKRIEGQQMHEDVKQHQ
                     FKAGTPTMGGTVFLVVAILVSLLFATAFQLLTGGVLAILFILALYGVVGFLDDFLKIF
                     RKINEGLNPKQKLALQILGGIVFYFVHVRGAGGGELNVFGHMVHLGVLYFPFVLFWLV
                     GFSNAVNLTDGIDGLASISVVISLLAYSVIAFNEQKFDILLVCVTMIGGLLGFFVYNR
                     KPAKIFMGDVGSLALGGMLATISIALRQEWTLLLIGLVYVIETSSVMLQVSYFKYTKK
                     RFGEGRRIFRMTPFHHHLELGGLTGKAEKWSEWKVDFFLWSVGLIMSLITLAILYL"
     gene            27806..28333
                     /locus_tag="U1396_000348"
                     /pseudo
     CDS             27806..28333
                     /locus_tag="U1396_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636114.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         8314 a         5353 c         6772 g         8106 t
ORIGIN      
        1 aggagatcat tttatgaaat taaaaaaatt gtttagtttg gcaacagctg ctttatcagt
       61 aggtgtactt gttgcatgtg gtaactcttc ttcaagttca gattcatctg caacaactgt
      121 tcgagtaggt gtgatgagct tgagcgattc tgagcaagcc cgttgggata aagttcaaga
      181 aattcttggt gatgaagtga aattggagtt cactcaattt acagattact cacaaccaaa
      241 caaggcagtt gctgaaaatg aagtagacat caacgcattc cagcactaca acttcttgaa
      301 caactggaat caagaaaatg gtgaagactt ggttgctatt gcggatactt atatcgcacc
      361 aatccgtctt tactcaggta cagctgatgg aaaaaacaag tacactaaag tggaagaaat
      421 tccagatggt gcagaaattg cggttccaaa cgacccgaca aacgaaagtc gtgctcttta
      481 ccttcttcaa gcagctggtt tgatcaaggt tggtgtatct ggtacagaat tggcaactat
      541 tgctgatatt actgaaaaca agaaaaactt gaaaattact gagttggatg caagccaaac
      601 agcaagttca cttagctcag ttgatgcagc agttgtaaac aatacatttg tgttggaagc
      661 tggtttggat tacaaaaatg ccctttacaa agagcaaaaa gatgaaaatt caaaacagtg
      721 gtacaacttg attgcagctc gtagcgattg ggaaaaatca gagcaagcag cagcgattaa
      781 gaaaattatc gaagcctacc acacggatga agtgaaaaaa gttattgaag agacttcaga
      841 cggtatggat gagccagttt ggtaaaatgt aaataggttg aggactgggc agaattgttc
      901 agccctctat ctgtttttat agagataaga aaaaatctct taaccaaagt cagaaatgtg
      961 ggaggatatt tgattttggt tagtagattt aattgatttt cattgagtat gaggagaaag
     1021 tatggcagat agtaaagttc aagcatttga aaatgatgcg attattcaaa actattttga
     1081 aaagttgaag gtcttgattt caaagaaatc tatttttgct cagcagattg gtttgttgga
     1141 tgtggcgact tatttgaaag atatgtttga agaggctggg gcagatgttg ttttagacga
     1201 cagctatgcc gcaccatttg tcatggcaac gtttaaggct tcagtgccag atgcgaaaac
     1261 attgattttc tacaatcatt atgatacagt acctgcagat gccgatcagg tctgggagaa
     1321 gggcaacccc ttcgaattga ccatttccga tggctatatc tatggtcgcg gggtagatga
     1381 tgataagggc catatcacag ctcgtctgtc ggccttgaaa aaatatcaag ctagacagaa
     1441 tggcgattta ccagtcaatg tgatttttat tatggagggg gcagaggagt cagcttctgt
     1501 cgacttggac aaataccttt caaaatataa agaatatttg attggtgctg atttgcttgt
     1561 ctgggagcag gggcatcgca atagcctaca tcagctagaa attgctgggg gaaataaggg
     1621 aattgtgacc ttcgatcttc aggtcaaatc agctgacttg gatattcatt cttcctatgg
     1681 aggtgtcatt gattcggcaa gctggtattt attatcagca cttcaatcca tgcgggctgc
     1741 agatggggaa attctggtag atggcattta cgagcaagtg caagagccaa atgagcgtga
     1801 attggccttg gtggaagaat ttgcactggc taccagtcag tctatgactg atatttatgg
     1861 actaaccctt ccaaccttgg tagaagatcg tcgtgagttt ctgaagcgtt tgtattttga
     1921 accatcgatt accattgaag gcttgtcaac tggctatctt ggtcaaggtg tcaagaccat
     1981 cataccagct caggcttctg ctaagatgga agtccgtctg gtacctgggt tggagccgca
     2041 tgatgtatta gataagattc gacagcattt ggacaaacat ggttttgaca aagttgagct
     2101 tgtcttcact ctaggagaga tgagctaccg aagtgatatg tcgcaccctg ccattgtcaa
     2161 tgtgattgaa ttggccaaaa aattgacacc agaaggagtt gctgtcttgc cgacgtcacc
     2221 ggggacagga cccatgcaca cagtctttca tgctctaggt gtgccgattg caggatttgg
     2281 tctaggaaat gccaacagtc gcgaccatgc aggtgatgaa aatgtcagca tcgctgacta
     2341 ctatagccat gttgaattag tagaggagtt aattgcaagt tatgagtaag gaaatgatta
     2401 agctagataa tattgatgta actttccagc agaaaaaacg tacaatcgaa gcggtaaagg
     2461 atgtgaccat ccatatcaat caaggggata tttacggtat tgtagggtat tctggagcag
     2521 ggaaatctac ccttgttcga gtgattaatt tattgcaggt gccgacagcg ggtaaaatta
     2581 ctatcgatga ggatgtaatt tacgagggag aaaaggtcac acttacccca actcaattgc
     2641 ggagcaaacg ccgtgaaata ggcatgattt tccagcattt caatctgatg gcgcaaatga
     2701 cggcagaaga aaacgtagcc tttgccctta agcattcggg tttgagcaag gaagagaaga
     2761 aagaaaaagt agccaaactc ttggacttgg ttggactttc tgaccgtgct gaaaactatc
     2821 cagctcagct gtctggtggt caaaagcaac gtgttgccat tgcgcgtgcc ttggccaatg
     2881 acccaaaaat cttgatttca gatgagtcaa cttctgcctt ggatccgaaa acaactaagc
     2941 agattttggc actcttgcag gaattgaatg aaaaattggg cctgaccatt gttatgatta
     3001 cccatgagat gcagattgta aaagatattt gtaaccgtgt ggcggtcatg caggatggtc
     3061 gcttgattga agaaggttca gttttagaaa ttttctctca tccaaaagaa gaattgacac
     3121 aggatttcat caaaacagca acaggaattg atgaggccct ggtgaaaatt taccagcagg
     3181 atattgttaa gaatttgcct gagaacagta tcttagttca attgaaatat gctggttcaa
     3241 atacggatac ggcgattgtc aatgatttgt ataaattcta tcaagtatct gccaatattc
     3301 tttatggcaa tattgaaatt ttagaccata cgccagtcgg tgagatggtg gtgatcttat
     3361 caggtgaacc tggtcagttg caccgtgcga ttgaagcagt gacggaggcg cgtgtggaag
     3421 tgacgatttt gaaaggagcg aactagatgt tagaatggat tcaaacgaat tttccagata
     3481 tttataaatt gggctgggat ggtcagacag gttggttaac acattttaat ttgaccctct
     3541 atatgacctt tgtttccttt gcttttggtg gatttatggg cttggtgtct ggtttgttct
     3601 tggtcttgac aggtccacgt ggggttattg ccaataagac tgcctattgg attttggaca
     3661 aggtggcttc tatcttccgt gccattcctt ttattatctt gttggcggct attgctcctt
     3721 ttacgaaaat tattgttgga aaaaccattg gtacagaggc ggctttggtg ccgctcgccc
     3781 tttcagtctt tccgttcttt gcccgtcagg ttgaagtggt cttatcagaa ttggaccgtg
     3841 gtgtcattga ggcggctcag gcttccggtg ctaccttctg ggatatagtc ctagtctatc
     3901 tacgtgaggg tctgcctgac ttgattcgtg tgacgacctt tgccttggtt tccttggtcg
     3961 gctatacagc catggcagga gctatcggag caggtggttt gggacaagtt gccctatcat
     4021 acggctacct acggtataat aatgatgtga cctttttagc aactcttttg attttagtta
     4081 tcattttcgt aattcagttt attggagatt tcttgacgag aaagattagt catagatagt
     4141 tatttagctg tgttttttca aattttggat agtccttgac ttatttgaag catttttata
     4201 caataaattt aattaaataa acactgccac cgggtagtca tgcaacagca ttttatgaac
     4261 gtcgttaggt cttagaagat gttcataggg tgctgatttt tctataaaag gagtgagaat
     4321 atgtcacaat ttgttgttga ttcatctttt tggagtctat ttccagatgc aaaaattgga
     4381 gttctattat tgaaagatta taaaacgccg gcgcaatcgc ctgatgaatt agtgaaatta
     4441 ctggaagaaa gcaacggaat tgcccagaaa tttcttacgg aagatacctt tagtgagaat
     4501 gaggtcattc gtacatatcg tcaagcctat caaaaattta aaacaaaaaa aggcgcgagt
     4561 tctagtatcg aagcactttt gaaacgttca actagtgacc gtccagtcac aacaatttct
     4621 ccattagtgg acatttataa tgcggcgagt ttacgttttg gtcttccatg tggcgctgaa
     4681 gatttagata catttgtagg caatctccaa ctaacggtca ctgagggtgg ggatgaattc
     4741 tatctcattg gtgatgaaac caataatcca actttaccag gtgaagtttg ctataaggat
     4801 gataaaggcg ccgtttgtcg ctgtttcaat tggcgcgatg gtgagcgaac catgattacg
     4861 gatgagacaa agaatgcgtt cttggttatg gagttggtca attccgatag agtggaagat
     4921 ttggaaaatg cccttgactt catcagtcag caagcagaga ccttcttggg agtagtgcca
     4981 gaaaaatatc tactagattg tgataggcct ggaatagcct tgtaggattt gtcagtggga
     5041 ttgtgttcgg atagatagtg gtctttctag acaaatgctg atttttctgc tacaatacta
     5101 agcatgaaag aaggttgttt caaaagcctg tctagcgagc ttgggagagt gaaagccaag
     5161 ccagtcttga aataattggc gctttcccag tcgtgaccat gtccgactca atcagaatca
     5221 tacaaatgaa gtaataaatt agggtggaac cgcgttctca acgcccctat gtctgttgac
     5281 aggggaagag aatgtggttc tttttgtctg ccgaccgagt atttcttgtt tttcatctca
     5341 aggtgaaaaa cagttactat aaagaaagga gaccaatgtt caccttagaa gctatcaatc
     5401 acgggcatga gcagtttact gggcctgatt ttcccaagct gattgcctat tttaaggact
     5461 tgggtatggt ggaaaatatt gtggatatcc agtctggaca ggttacctat cgctcacaga
     5521 cagggcagac tctggaaaag acgggctatc aagtaacgat acctgtttcg gaccaagcca
     5581 atctggacca gtttgtgact atcttacgca atcatcaggc tggacaaaca gattttccca
     5641 ccttctgtca agaaacagca gaagcaggcg tttacaagtg ggtcatcgac ctagaagcca
     5701 tgacctgttc ctatctggac caggcggagc aagctgtttt tgtggaagct gtaccgagtg
     5761 tggagaacta gcaattttga aatataaata gaaagaggat gttatgtcaa aaaaacttac
     5821 ttttcacatc gtcagtggca tagtctcctt tcagtcgaat tgccaaacgc tcatcgctat
     5881 ggcgactgag ctagacgttg tactagttcg cctttcctag cggtatcggc taggaaggct
     5941 cacgtcgcaa tcaatttata tagaaagagg aaatatatgt ctaaaaaatt aacattccag
     6001 gaaatcatcc tgaccttaca acaattttgg aatgagcagg gctgcttgct catgcaggct
     6061 tatgatacgg aaaaaggtgc ggggactatg agtccataca ctttcttgcg tgctatcggt
     6121 cctgagcctt ggaatgcggc ttatgttgag ccttcgcgtc gtcctgcgga tggtcgttac
     6181 ggggaaaacc caaaccgtct ctatcaacac catcaattcc aagtggttat gaaaccatct
     6241 ccatctaaca tccaagaact ctacttggaa tctttggagc gtttggggat taatcctttg
     6301 gagcatgata ttcgtttcgt tgaggacaac tgggaaaacc cgtcaacagg ttctgctggt
     6361 ctgggctggg aagtttggtt ggacggtatg gaaatcacac agtttaccta cttccaacag
     6421 gttggtggtt tggcgacagg tccagtcaca gccgaagtaa cttatggttt ggaacgtttg
     6481 gcatcctata tccaagaagt tgactccgtt tatgatattg agtgggctga cggtgtcaaa
     6541 tacggcgaga tctttatcca gccagaatat gagcattcaa aatactcctt tgaagtatcg
     6601 gaccaagata tgctccttga aaatttcact aagtttgaaa aagaagcaga gcgggctttg
     6661 gaagagggct tggttcaccc agcctttgac tatgttctca agtgctctca cacctttaac
     6721 ctgctcgatg cccgtggagc cgtatctgta accgagcgtg caggctacat tgcccgtatc
     6781 cgtaaccttg cccgtgtcgt tgccaagacc tttgtggcag agcggaaaaa actcggtttc
     6841 ccacttttgg atgaagcaac acgagcagaa ttgttgaagg aggacgcaga ataatgacaa
     6901 agaatttact tgttgaactt ggtttggaag aaattcctgc ctacatcgta accccatcca
     6961 tgcaccagtt gcgtgaccgc atggcgactt ttttgacaga caatcgcttg gcttttgata
     7021 gcattgatgt cttttcaacg ccacgccgtt tggctgttcg tgtccgtggt ttagcagacc
     7081 agcagactga tcttacagaa gatttcaagg gtcctgctaa gaagattgcc ttggatgcag
     7141 acgggaactt cactaaagct gcagaaggct ttgtccgtgg caaaggcttg acgacagcgg
     7201 acatcgaatt ccgcgagatc aagggtgaag agtatgtcta cgtgaccaaa cacgaagctg
     7261 gtcagccagc taaggcagtc ttggcaggca ttccagaggt cttgaaggct atgaccttcc
     7321 ctgtcagcat gaactgggcg tccaacaaat tcgcctacat ccgtcctgtc cacaccttga
     7381 ccgttctttt ggacgatgaa gcattggata tggacttctt ggacattaca tctggtcgca
     7441 tcagccgtgg tcaccgtttc cttggaaatg aaactgagat tgcaagtgca gattcttacg
     7501 aggcagactt gcgtgcacag tttgttatca ctgaccccgc agagcgtcaa aatatgatcg
     7561 tcgagcaaat caaggctatc gaggacaaac acaacgtgac agttgaaatt gatgaagatt
     7621 tgctcaacga agttctcaat ctggtcgagt acccaactgc cttcatgggt tcttttgaca
     7681 ctaaatattt ggaagtacca gaagaagttt tggtaacttc catgaaaaac caccagcgtt
     7741 actttgtagt gcgggataag gctggcaagc ttttgccaaa cttcatctcc gtccgaaacg
     7801 gtaatgacca gtaccttgac aatgtcatta aaggaaacga aaaagtcttg gtggcccgtt
     7861 tggaagatgg tgagttcttc tggcgtgagg accaaaaact caagattgct gacttggtag
     7921 agcgactcaa agttgtgacc ttccatgaga aaatcggctc actttacgag cacatggaac
     7981 gcaccaaagt tatcgcagaa aaactggctg acttggcagg tttgtctgcg ggtgaaaaag
     8041 cagatgtggc gcgtgcggcg gacatctaca aatttgacct cttgacaggc atggtcggtg
     8101 agtttgatga attgcaaggg attatgggtg agaagtatgc ccttcttgca ggggaaaaac
     8161 ctgcggtggc agcggcaatc cgtgagcact acttgccaaa ctcagcagaa ggcgaattgc
     8221 ctgagagcaa ggtcggtgcg gtcctggcac tggctgataa gtttgacacc ctcctatcct
     8281 tcttctcagt tggcttgatt ccgtctggtt caaacgaccc ttacgctctt cgtcgtgcaa
     8341 cacagggtat cgtgcggatt ttggaagcat ttggttggga aattccattg gatcagttga
     8401 ttgcggagct ctacagcttg aattttgcta gcttgaccta tgacaaccag ccagctgtta
     8461 tggactttat ccgtgctcgt gtagagaaga tgatggacaa gaccattccg aaagacatcc
     8521 gcgaggctgt acttgccagc tcaacttttg tggtcagact gcaactggca gccagctctg
     8581 ctattttcca aaaagcaaaa gaggctgact acaaggaagc cgtggaaaac ttgtcacgtg
     8641 tcttcaactt ggctgaaaag gcggaggtga ctgcgattga cgaggccctc ttcgaaaacg
     8701 accaggaaaa agcccttgct gctgcagtgg caggcttgga gttgacagaa gatatggcgg
     8761 gcaacttgga caagctcttt gctctcagcc cagtcatcgc ggccttcttc gacaatacca
     8821 tggttatggt agatgacgca gcagtcaaag ccaaccgctt gaccctcttg aaagccttgg
     8881 cggataaggc aagtgctgtg gcggtcttca atctcttgaa tagtaagtag gaggcattca
     8941 tggaacaagc aaaaatcgat cggatcaatg aactggcccg caagaaaaaa gcagaaggct
     9001 tgacagagga ggagttgcag gaacaggcgg ctcttcgtga ggagtacatc gagggctacc
     9061 gccgtagtgt gcgtgcccac atcgaaggta tcaaggtcgt cgatgaagac ggcaatgatg
     9121 tgacgccaga gaaactccgt caagtccaac gtgaaaaagg cttgcacgga cgtagcttgg
     9181 acgatcccaa ttcctaagag taagattgcc aaaaaaacaa ggaaagacta ggttttctag
     9241 tcttttttgt gcttttgaga acatatattt acttgttcat tcgattcata aatggtaaaa
     9301 tgtatataga taaataggct caggagggct ttgtcatgaa aaaactactc tattttctct
     9361 tgtttcttac ctacatcgca tgtgcataca gcacgatttt ctttctgcct tttatgtact
     9421 tttctggaat tgttggggca acaggagttg gtctgggcct aagctattcc ctacatcaag
     9481 aagtcaaaaa gcatcctgaa aaacaattgt cagagtattt accgtgggga tctaagaggg
     9541 acaagattat ggtagtaacc attctacttt tctccatttt ggtcagtttc attccagatg
     9601 tgaattggca tagaggcctg gcaatcctct tagatatcag ctatgtactc ctttggcaag
     9661 ctatgcttat ccaattctta cgaaaatatt attttaaaaa cgcatgagag tttcatgcgt
     9721 tttcttttct aaatactttg tccagctttt aattttttca taaagatgat ggaacttgga
     9781 atcaggacga tgatgcttcc gatccaggcg gcggggttag cggcggcggt tccataaaaa
     9841 ccgaaatact gcatgccgat gatggcgact gctgctcgga aaatcagttc tccaaagcct
     9901 gctagtgttg ggataaagcc cttgccaagt ccctgaataa agctacgaag aataaagagg
     9961 gaagcaacaa tccagtaaca agagccgtta atgatgtagt aaacaagagc caagtccagc
    10021 actgtttggc tggcatttgg cagaaagaga ccagagaaga agcgattgcc caagatgaga
    10081 atgaccgcaa atacaatggc ccaagcaatg ctgaggagta atgagtggcg cactccttct
    10141 cgaatacggt catagagctt ggcaccgtag ttctgagcag taaaggttgc gatagccaag
    10201 cccagattga ccatgggcag catagccaac tggtcagtac gaagggcaat ggcctgggcg
    10261 gcgatggcgt ctgttcctag ttggttgacc ataaactgca aggtcatggc tccgatggcg
    10321 ataatactgg cttgaaatcc cattggaaaa gcaagctggg catgtttctt gagattacct
    10381 ctatccaatt ttaaatcagc tagtccgata tgatagtgag gtaccttgtg gataatgtaa
    10441 aaaataagaa agaggaccga acaggcttgg gcaaggatag ttgcaaagcc agctccgaaa
    10501 acgccccagt tcataactaa gataaagaaa aaatccagac cgatattgat aaaacaagcg
    10561 ataactagag ccagtagagg tgttttagag tttccgagac tgcgtagggc tgaagacagg
    10621 aaattataaa aaatagtaaa ggtcaatcct ccaaacatgg ccgttagaaa ggcatgggag
    10681 tggtcgatga tactcacagg cgtttgcatt aagaccaaga taggtttcaa aaaagctaag
    10741 gctgagactg ttagtaaaag gctgatgagg gaagcgtaga agagtccgtg gacaaaagat
    10801 tttttaagcc cctctaagtc gccagctcca aagcgttggg cagaaataat ggttaatcca
    10861 ttggtaacac cttgggcaaa accgatgatt aaaaaaatca ggctggctgt cgaaccgaca
    10921 cttgcaaagg cgtcctttcc caaagtatgc cccacaatca tggaatcagc aaaattatag
    10981 gccagttgaa aaaaagatcc aatcaacaag ggaatagcga attgtaagat gaccgcaatc
    11041 ggctttcctt tggttaaatc attcataacg tctccttttg acagatgata agcccactag
    11101 ataaatgata gtctagtagg ctttctaggg ataaaatatt tctcctgaaa acggagtata
    11161 ggcgtaaatt tgttatttat actcttcgaa aatcaaaatc agacgttgtt gacttgattt
    11221 gatgagtgaa aggctccagt ggagcctttc agcctgttac cttgaaacaa aatagtaaca
    11281 gggttctatc tgcgtaagta gtaacgaact acgttcgccc tatctccaac ctccaaaggt
    11341 tccccaaacc tttggagcta gtctgttttt gattttcatt gagtattaat ttgtcagttc
    11401 ttcaaaatga tcgacagtgt tatggtctgt tactgctaag atgagttcgt cagatttgaa
    11461 gacatagtca ggagtcagtt ggatgtttaa ttcctgattt tcgccacttc ggtaaccgat
    11521 gatattgagt ttataatgtt ggcggagttt taattcgccg agtgtttttc caatccattt
    11581 tactggcggg tgaaactcga caatggaaac attgccttcg agctcaaaga ggctggttgt
    11641 atcgcggtgg agtagttgtt ttgctagaga aatacctgtt tcacgttcag gagaaataac
    11701 cttatcggca ccgacacgaa gaaggacttc tttcgcagtt gttcctttga ctttgacaat
    11761 gaccatagga acacctagaa ctttgctatg catgacagcc agaacactgg attccaagtt
    11821 ttcgccagta gctacaacaa cagcatcgca gttaccgatt cctgctgcac gtaggagcga
    11881 gcgatcggtg atgtctccga caataccgcg tgtgagaata ggttctagat gattgatacg
    11941 ttgctcatga ttatcgatag caatgatatt gcaatcgtaa ttgtgtaatg tttttgcaat
    12001 ggtagtacca aaaactccca ggccgagaat tccgatagta tagtttggca tgatttctcc
    12061 ttttaaacaa gcatagatga ttttgcgtat tgaagacttt cggttttaga taattttcga
    12121 acagaaaggc ttgcgagaat agaaagtgga ccgatacggc cgaagaacat gagcgccata
    12181 atgactgctt gaccggccat ggttaggctt ggagtcagat ttgccgtaac acctacagtg
    12241 gctaatgctg acatgacctc gaacattaaa aatagaagtg gttgtcggtc atctgttagg
    12301 gcaagtgcga agagccctat gataaacata agtaggaaga ctgagaatgt cgcaaaagct
    12361 ttgcggatgc tgaggttatc gatggttcgt cccataaagt tggtatgagg gagaccgaga
    12421 atctcgctac gagcatagag cactaaggtt aggaaggcgg ttattttaat accgccggct
    12481 gttccacctg gggctccgcc aagcatcatc tgaaagatat agagcaagag ggtgattggt
    12541 tcagccttcg tatagtcgat gctggcaaaa ccagcggttc tcatggtgac cgtctggaaa
    12601 aagctggcta ataatttatg gccaaatgat agttgcccga tagtagaagg gttattccat
    12661 tcagtgagta aggttgtcag agttccgagg gttagtataa tggctgttag gcctagaaca
    12721 atctttgtat ggaaccctag ttttcgtagg ctacgttttt gcccgatttg tgtttgaagg
    12781 tcaaaccaaa ccgagaatcc aagacctccc ataataatga gactggctaa tgttatgttg
    12841 attagaggat tatccacata gcgcatgatg ctagttgcgc caaaattatc aaaaccagca
    12901 ttacaaaagg ctgatatagc tacgaaaatg gaggtaaata aacctctcgc ccatccaaat
    12961 tcaggcacaa aatgaaagga cagtaaaagg gctccaaagg cttcgaccgc caaggtaaaa
    13021 ccaaaagctg atttgaggaa gttacgaaaa tattttgtgt cagatcggtt tagagcttct
    13081 tgtaaggtcg ccatattgat gaaattcatt ttacgaccac cgcgtaaagc gaagagaccg
    13141 atgaatccta tcaagctcaa accaccaatt tggattagca tcatacagat aatctgtcca
    13201 aaagtagaat aggtttcagc aacggctttg gtaaatagcc ctgtcacaca aaccatggag
    13261 acagatgtaa agagatgatc ccaataactt gctgtagagg tgctaatttg tgagatggga
    13321 agacttagta aaattgatcc agtcagaatc acgaataaga aactgataat gattcgctga
    13381 ctgggagaaa gtttgatcct aaatggtgac ataattctac cttttctcaa aaaaataaaa
    13441 gatgaagata ttgtagcaca aaagaaagaa aatgtacgac taaaacacgc aaagaacctg
    13501 atttttttct cttcttgaaa gcttcattat tttttattac catggatttt ataagtggtg
    13561 tttatatgag gtggctcatt atatttgtga caccaggatt atggggaaat tattatgggc
    13621 aatgaaaaag tggtgcggac cataaaaaga atctccttag ttgacctagg gagatttatt
    13681 tccattctgc taagactagt tgatgatagt gacgtaaagg tccgaccttt tggaggaggt
    13741 aggtagcagc cagtccgacc aataagcctg ataaaattcc tgtaaaagcg aggattggca
    13801 ggtagtttag tacatagaaa gaacgggcaa tggtagcaaa aacaagaagc tgaccaagat
    13861 tgtgcaacat cccgcccaga atagaaattc caataggact gacacggttt ggaccgagct
    13921 gcttggcaga gagcattcct acataactca aagtagttcc ggcaaagcca tagaggaatg
    13981 tggaaaaggt gcctcccaga aaggttgaga tgagcaagcg tagagcgaca acctttaggc
    14041 tatcctttgt agggagggta aagatagcaa ttaagctaat caaatttccc agtcctagct
    14101 tggcgcctgg agcaaaagca aatggggggg tgatgagtcg ttcaatcaaa gaaatgacaa
    14161 ctgcctgagc tgctaacatc gtaataaagt taagtgtttg acgtttagaa ttcatgggtg
    14221 tagagaaaaa actctttcta gtcgattatc tattttacta tcatacttgt ttttgttcac
    14281 tatggcaagt tttgtttgtg tatattacta attattgaaa tttgcttgtc aactatcttg
    14341 gaatacgata taatggaaac atgtaatttg ttttgatttt cacaaggagg aaacattgtg
    14401 acgaaaaata ttgtgattgt cggtgctggt tatgcgggga ttgcagcagc tcgattgcta
    14461 ggaaaaactt ttaaaaagga tcaagatgta acagttacct tgattgataa gaactctttc
    14521 catacctata tgacagagtt gcatgaagtt gcggctgggc gtgtggaagc caatgcaatc
    14581 aagtatgacc ttcaacgtat cttcaaaaaa tatccaaagg ttcaattggt aacagacaag
    14641 gttgttgaga ttgactacga taagaaacaa gtagttgcgg aacaccaaac tctggatttt
    14701 gattacctgc tccttgcaat gggtggtgag gctaatgact ttggtgtgaa aggtgttaaa
    14761 gaacacggtt ttacactttg gtctatcgaa gcagcagaac gtttgcatga ccacatgatt
    14821 gatgcttgct atcgtgccat gcgtgagcat gatgaagcca aacgtcgcgc tcttttaacc
    14881 tttaccgtta tcggtgctgg cttcacaggt attgagatga ttggtgagtt gattgactgg
    14941 gtaccaattt tggcgcgtga gttcaagttg gatccaaaag aattctcact taaggttgtt
    15001 gaggcaacgc caaatatctt ggctatggtt actgaaaaag agcaagtcaa ggctcgcaaa
    15061 taccttgaga aaaaaggtgt tgaattggtt cttggcgatg gtgtagcaag tgtacaagaa
    15121 gatagcttga cactttcatc aggtcgtcaa attcctacct atacctctat ttggacagct
    15181 ggtgttcaag ccaatacaga cgcaagtgaa tttggtattg aaaaagcacg tgcaggtcgt
    15241 ttggtagcca atgagttcat ggaagcgaaa ggcaaggaaa atgtctatgt agctggcgac
    15301 ttggtttact ttgaagaatc agaaggaaaa ccaactccac agattgtaca agcagctgaa
    15361 cagacaggcc atactgcggc aagaaatatt atttcagcaa tcaagggtgg cgaaaaacat
    15421 agctacaaag gtaaatatga tgggtttatg gtatctattg gagcacgcta cggtgtagcc
    15481 ttcttgatgg acaaatacca catgtcaggc tttatggcaa tggctgtcaa acacatggta
    15541 aacctactct acttctttac tatccgtagt ttcttctaca tgggttctta tgttcgtcat
    15601 gaattctttg acattcagaa taagcgaaac atttttggcg gtcatacttc aggcaaagga
    15661 aatcttctct ggtctgtgcc aatgcgtgtc ctttatggtt cagtatggct ctacgaaggt
    15721 atcaagaaag cctttggtct atttggaaca acatcatggt ttggggatca agttgtcttc
    15781 ccattccctt ggttagctga tccagtatct ggtgcatctg ctgctgaggc ggtttcaagt
    15841 gcctcacaag cggcaactgc tgcggcagaa gcagctgaac caatttttgg tttgagctat
    15901 gcctatggtg aagcaccgat ggctgttttg gacaaaatgc ctgattggtt tgctactatc
    15961 atggaattta tgatgccaaa ccaagaagta gcactcttta tgcaaaaatt tatgacagta
    16021 gcagaaatcg gtattggtct ggctttgatt gctggtgcct ttgtatggat tgtatctgct
    16081 gcaaccgttg ctttggtagt tatgttcagc ctgtcaggca tgttctactg ggtaaatatt
    16141 tggttcatcc cagcagctat ttctcttatg aatggtgcgg gtagagcctt cggtctagat
    16201 tactggatta tgccatggtt gggtcgtttc ctagacaaga agatttatgg aaagccgaag
    16261 catatttacc gtatcaagta taaaaaataa aggaaatata gaaagttagt ggtacatcaa
    16321 atttggaata cctatcctga gattgagagg ggacttgaag aggtaaaatc catcatctta
    16381 tctgagatga tggtcctgca tccagcagtt acatcgaaga ttgttgaata tgtagaggcg
    16441 ccagggaaat acctgcgtgc tggcctctgt ctgctctttg cacaaatgac ggaaggaaag
    16501 attagccgtt caaagctata ttttgctgcc catttagaag tcctgcatct ggcgactctt
    16561 attcatgacg atgtgattga tggcgcggat aaacggcggg gagtcacggc ggctcatcaa
    16621 caattttcga atcgaatcgc tatctacacg ggtgattatc ttctggccta ttcaagtcga
    16681 ctatttggaa aggggcttcg tttgctagaa gtatcacgtg atgatttgga tttgggcaat
    16741 gataagctga tggaaacaat tcttcgaggg gaattatctc agctactcaa tcaatttgat
    16801 gccaatatga ctatgaaagc ctatctcaag caaattcaag gaaaaacagc ttttctattt
    16861 ggacttgcct gtcagttggg gagctttgta ccaggccaat ctaggaaaga cagtagcatg
    16921 gcttttcggt ctgggcaagc acttggcatg gcatttcagc tacgagatga cttaattgac
    16981 tatcagctgg atgtagcaga atcaggaaaa cctagattgc aagatattca aaacggtatc
    17041 tatactgcac cgctactttt tgccatgcga gaagacaagt ctatccagca gcaattgcgg
    17101 gcttatattc aatcccctac ggcagaaggg ttggaaatcc ttacagatag gatttttgca
    17161 acgcatgcta ttgccaaaac agagaaactg attgttagct atttggaaaa aatgatgaat
    17221 tttgtagata gaataccaca gttatcgact gcgtctatgc aaaatttggt ggcaatagtt
    17281 tttagtcatt atttttaaaa aataactaga cattttctct aattaggtat atcattataa
    17341 gtataaaact atttacttaa caaaaggagc attgttatga aaacaactaa agttgtgttg
    17401 aaaagtttgg tagttcttgg tgcggtattt gcactcgcag cttgcggctc taaacaagaa
    17461 tctgcttcaa cttcgtcttc aactaaagaa acagtagtat tgaaagatgg tacttataaa
    17521 gctgagtcaa gcaaagacga ttatggctac aaaattgttc acacattgac tgttaaagat
    17581 ggaaaaatta gtgagtcaaa atttgactac gaagcagaag acggaagtct taaatcagca
    17641 aatgaagaat acaacaaaaa aatgaaagat aaagctggag tttctgccgg tgaagcaatt
    17701 gaacaactca atgcagcttt ggttgagaaa caagaactct cagctgttga agttgtatca
    17761 ggtgcaactc atacttctga agacttcaag aagagtacag aagcccttct tgcagcagct
    17821 gctgaaggaa aaacagaaac tgtaaaactt gactaattaa gtctatacag aaaagacaca
    17881 gtcgcacttg tttggctact gtgtcttctt attttttggg gaaggtaaaa tcagtgaaaa
    17941 aaattgcaag tctattgttc gtgggcctac tgatggtttt gcttgttgcc tgtggtggta
    18001 aacaaaacga aagtttatct gttgtgaaaa ctccgttgac tcgtagtgaa agcttacttc
    18061 acacagtagt gcagttgagt atttatcatg aaaatcagga agaagcgatg gatgaagctg
    18121 tctcctatat taaggagatg gaaagtctgt tgtccacaaa cttggaaggg gcagatgtct
    18181 accgtatcaa tcaggcagca ggaaaagaag ctgtcaaggt tgatgaacgt acctttgaag
    18241 tgattgaaac agctattgac atgagtaaag aaagtcaggg gctatttgac atttccattg
    18301 gagctgtgag caatctgtgg aaaattggag atgaggatgc acgtaagccg agtgatgaag
    18361 aaatcaaagc tgctctgcca tttatcaatt ataaagacat tactttagat aaggagaaga
    18421 agaccgtctt tatcaaagaa ggaatgacct tagaattagg agccatttcc aaaggttaca
    18481 ttgcagataa ggttagggaa ttgtttgcca gcaaagggat tacgactgct atcatcaatc
    18541 taggtgggaa tgtagtggtt atgggggatt cgccaacgac acaaaatggt tggaatgttg
    18601 gagttcaaga cccagaccaa gtgcgtggat caacggtcgg ttctgtgcca gggacacatg
    18661 attcggttgt tacctcaggt atttatgagc gttacttaga ggtggacggt gtcaaatatc
    18721 accatatcct tgatcccaaa actggatatc ctgtggaaaa cgatatctca ggtgtgacag
    18781 tcttttccaa aacatctatc caaggagatg ccttatccac aactctcttc ttactaggtg
    18841 tggaaaaagg tcttgacttt atcaatcaga ttgacggtgt agaagctgtt ttcatcgata
    18901 aggagcaggg tgttcatctg agtgatggct tgaaagaaag ctttgaatta acgaatgagg
    18961 agtatcatct tgtcaatgaa taaatcaact aaagggctca gtttgcctgt atttctagaa
    19021 tttgttgaaa tgaagaccaa ggtagccagt gtttttccga tgaccctggg gattttatgg
    19081 agcctgtatc gctatcaagc tttcaattgg ctcaatactc tcctcttcat tattgccgtc
    19141 cttagctttg acatgtgtac aactgccatc aacaatagca tggactacca caaggccaag
    19201 gatgaagcct atcgtcagga aagcaatgtg attggaaaat tctccctaga ttttcgtcag
    19261 atgattggaa tcgtccttgc tctacttatt ttttctctac tggtttcatt actccttgta
    19321 tggcggacca gttggctcct cctaccgatg ggagctctct gtttcctcat tggtatcttc
    19381 tatacctttg gacctattcc gctttcgaga atgccactgg gtgaagtttt ctctggagta
    19441 accatgggat ttggcatctt ctttcttgct gtatttattc agcaaccaga tttgctactg
    19501 accagccaag tgagcggtca gtggatgact ttgcaatttt cttggataaa aataattgaa
    19561 attattttca tgtccattcc tctggtaacc ttgattgcta atatcatgtt ggctaacaac
    19621 acctgtgatt tagaagaaga tattcgcaac catcgttata ctctggttta ctatattggc
    19681 aagaaaaatg ctcttaaatt gtattttgtc ttggcaagtt taccatggtt gctgtggata
    19741 atctactgtc tgataggatt cttaccaatt tgggcactgg ccggtttaat cggagtttgg
    19801 cctgcttata agagtctaga aacatttttg aaaaagcaag tcaaacggga aacctttatc
    19861 gaggcagtaa agagttttgt actctttgcg ctgctatatg tggtgatact tgctttagcc
    19921 cttattttct aaaaaggaaa gacacagtcg ttcataaggc tgtgtcttct ttgttatatc
    19981 gtcagttagt ttttctttta ttacttcgac gagcgaggaa acatcgtttc ctaatttcca
    20041 acttcaaaca ctccactgga gtatttgaac tcgccttgcc tgattgaaac agtctggggg
    20101 actgtttcaa gtcaatgcct agaaataaga aagcattgag ttatgcctgc ggcttttgat
    20161 gcgaactttg ttcgctttat ctccaacctc caaagatttc ccaaaccttt ggagctagta
    20221 ctaaaagtaa actaaaagac tatagtggta aaatgagttc ttcttcatca gtgctttctc
    20281 cgccaacgga tttgatttca atcaacaggt tatgtggcag gcagacggag agttgacccg
    20341 gctggctaat ccagctggtc ataacggcaa tttggtctgg gctattgtct tccttgacac
    20401 gaatgcgttc gccatcaact tcaatgatat tgtattgccc ttcattggga tagtaggtct
    20461 tttcttgatg aggtgtgtcc tttgataatt caaattggtc gaccacctca ccattgatgc
    20521 ggacataggc aattgttttt gcctcattag tatctgtagt cagatgtgtg taggtaaaaa
    20581 ttgctggaag aaaggataaa actagggtga atccgattaa gatataatca aatagtttga
    20641 gttgtttgag aatggatttg aatgtcatat acaatctatt ttatagaaaa aatcctactt
    20701 tgtaaaatgt tggatgcaga ctactttttc aattgtctaa agaagagtag gatggctaac
    20761 attccccaaa atccagcatg aagtggctga atttttccag cgaaaaatac aatggagaaa
    20821 gttagggcaa aacctgcaaa gagaaaccag agcagtggtt tatgataaag atagatagct
    20881 ttttggaaag catttgcttc tgggccacta gtctgccagt cactattcaa gattggaagc
    20941 atagtgaaca gtaagataaa aattggtgga ttgtccccag tcaggtagct atgtatatac
    21001 aggctacaaa ttgctgtata ggagagaaca atcaaagtga gtatgaattt cggtttgtca
    21061 acgttcatct ggcttctcct ttttgaaata aatccgataa agaatagcgg cagcaaatcc
    21121 agcaggaagg atgaggataa gtggtttgac atgtcctaac caaatgccca cggaataggt
    21181 caaggtcatg gcaaacaggg caaagatggc ttgaatgata aagtagcgtt tttcttctgc
    21241 tgtttgatag gatttgatga tttggatggt cggtagcatg agcaggaatg aaccgttaat
    21301 cggctcattg accatgtaag agtagatgaa gaaggcagaa aataaagcat aaaatagaac
    21361 aaaaaatcga caggtttgtt tgggtgtaaa aggtttattc atggggtcag ctccttattt
    21421 tttcttgaca gaatctgctt ccagtttttg cagataggca atggcagaca gggctagact
    21481 ggcaaagagg cccatcatgc caccgaagag gagggatttt acgtggaaga tggaagccag
    21541 taggggaagc tggaggctaa agaggtctgc cagcccagca aagaggctag atagcagggc
    21601 aactcccagt cccaaaacca gtggattgag ggtctgtcct tgtttttcct cagggctcag
    21661 ttcgtccatg tcatattgag gcaggtcagc atggagggtg cgcatattaa cgataccaat
    21721 taggataata ctgaagaagg caatgatcat tggatagtag gcagccacct ccagagggta
    21781 gcggtaggct aggaagtagg cgatggcatt tccaagagct aggaagtaga agtagtagat
    21841 aaaggcttgt ccgccgatag catcagcctc ggcccgtcgg tattcgtcta aaggaccgcg
    21901 gataccataa aaacgtttaa tcatattttt gatccacttg ggttcttctt tggcaatagc
    21961 agagctgaca gttagttttt ctgccttttt catgcgttta cgaagagtga tttcgatata
    22021 aattcccatg aaaacaccga ctagacaggc tgcaaggaat tttcggaggt caaataaatg
    22081 gtctagtgga ttgagtcctt ccatccaggc atcaaatccc gtgttccaga tatacatacc
    22141 acaggtgaaa tagagggcga atttgatact tgctcccttg aatttctttt gttccttggt
    22201 agtcagttct tctacatcta aactgtccac ttgactgtgg cgcatcttgg atgtcatata
    22261 catactggcg gaaagagtgg ataggagtag agccgttggg tagccatagg caacgacttc
    22321 tgggtagcgt ttggataggg caagtgccag cagggttata gccatggtgc cccaaaagag
    22381 caggataaag caggtattgc ctagtcggaa ggcttctttt tggcgaaatt catccaaggg
    22441 ccctgcgata ccgtaaaatc gtttgattaa tttatcttga aaggtttctt ttttcataag
    22501 cagctcctta tttttgatcg aacaatggta agatgtaaac aaagcctaag aagtagatgg
    22561 tcccagcaat cagcaattgt agccaaaatt ttgcttggct gatggtgtgc aagatttctg
    22621 ctccgctatt gccccaaagc tgaaagagga caaagagcgg tataaaaata agggtagaga
    22681 taagagcttg acgtatattc tttttcatgt tttttcttcc tttctattca ttccaaaaga
    22741 ggctgttgag gtcagtctgt aaagctttgg ctaggttgat acagaggtct agcgaggggt
    22801 tgtatttgtt gttttcaatc atgttgacgg tctgcctgga tacgccgatg gctttggcta
    22861 gatccagctg ggaaatgcct agcagtaggc gataatcttt gacacggttc atgtgccctc
    22921 ctttctatgt caattatatc tgacatgctt ggctaaaaat gagaggatag gttgactatc
    22981 cttttaaaat attgtcaatt atatctgaca tataactgta aaaaaatgtg ggagacctcc
    23041 ctgttgatgt caactatatg tgacatgttt ctttactgtt agtatatacc tgttcatata
    23101 agttgtcaac tatatttgac agtttttttg taaaaagttt gcaacaactt tttattttaa
    23161 tttgtggtac aatagaaaag atatgaccaa ggaatttaat cacacaactg ttctcttgca
    23221 tgagacagtc gatatgttag acatcaaacc caatggaatt tatgtagatg caacgctggg
    23281 tggagcgggt catagtgagt acctgctcag tcagttgacg gatggtgggc atctttatgc
    23341 ctttgatcag gatcagactg ctattgatca tgcccatatt cgcttggcat cctacattga
    23401 aaagggacaa gtgaccttta tcagggataa tttccgtaat ctcaagactc gcttggcgga
    23461 gctaggtgta acagagattg atgggatttg ttatgattta ggagtatcta gtccacagtt
    23521 ggatgagcgg gagcgtggct tttcttacaa acaagatgct ccgcttgata tgcggatgaa
    23581 tcgtgaggga catttgacgg cttatgatgt ggtcaataac tatgattatc acgacttggt
    23641 acggattttc tttaaatacg gtgaggataa attttccaag cagattgctc gtaagattga
    23701 acaggcgcgt gcggtcaagc cgattgaaac aacgactgag ttggcagagc tgatcaaatc
    23761 tgccaagcca gccaaggaac ttaagaagaa gggccatcct gccaagcaga ttttccaagc
    23821 gattcggatt gaagtcaacg atgagttggg ggcagcagac gaatctatcc agcaggccat
    23881 tgacttattg gctttggatg gacggatttc tgtgattact ttccattctt tagaagatcg
    23941 tttgaccaaa caactcttca aagaagcaag tacgattgat gttccaaaag gtttgccatt
    24001 tattccagat gacttgaagg cgccacttga attggtcaat cgtaagccta tcttacctag
    24061 tcaagaagaa ttagaggcaa ataatcgcgc gcattcagct aaactgcgtg tagctaagaa
    24121 agtacataaa taggagagag tctatgttgc aagaaaaacg tagagaagcc actatgcggg
    24181 ttatcggtga taaaattaga accttcacac gtgtagaaaa agccttctat tcaagtatcg
    24241 tattatctgg attagccctt gcgataggaa ttatctttat gcaaacgcgg cttttgcaac
    24301 ttcaatctgg catggccaaa gtcaatcaag atattagcca aaaacagatt gaaattaacg
    24361 atgcaaagca agctgtcaat gaattgacac gttcagctcg cttgatggaa attgctgaaa
    24421 aagctggatt aacttttaat aatgacaata ttggagtagc cgaataatgc ccagaagaaa
    24481 taataaactc ttgcggtatg tcttgaaaaa acgatatgtt ccgtcaaaaa atcgtcgaag
    24541 agtaggacag agcctacttc ttttgacggt tttcgtcttt tttctctttt taatcaactt
    24601 tgcctatatt atcggcactg atagtaaatt tggggtggac ttgtcagaga gagctgatgc
    24661 ggtacaccag cgtgaagtta ccgttcaagc taaacggggg acgatatacg accgtacagg
    24721 aattcctatt gcagaagatt caacgaccta tacagtctat gccatcattg acacagaata
    24781 tgtgtcagaa ctgaaaaaag ttttgtatgt gcagtcttct cagttcagca aagtagcaga
    24841 aatctttaaa aagcatctcg gaatggagac agcttatgtt atggagcagc tgaatcaacc
    24901 ggaactgaag caggtatact ttgggacctt aggtaagaat atctcctata gcacgatgtc
    24961 ctcaatccaa gaagagatga aggcggcagg tattgaaggg attgccttta atgctagtcc
    25021 aggacggatg tatccgaatg gaaattttgc ttcaattttt gtcgggttag ctaatccggt
    25081 tgaaaacaag gatggtagtc atagtttaca gggtgtgagt gggttggaat attatctgaa
    25141 tgatattcta gctggtcaag atggaaaggt tatctacgag aaagatagtc aaggccgtgt
    25201 cctacctggg acagaaaagg ttgaaacgga gacagtaaac gggcaggatg tctatacgac
    25261 aatttcagcc gatctgcaac gttctcttga aaccaatatg aataccttct ttgataacgc
    25321 caaagggcga tatgcgaatg caactttggt ttcagccaag acgggtgaaa tactggcgac
    25381 gacccaaagg ccaagctatg attcagatac caaagaaggt ctgggacaag aaggcctgct
    25441 agagcggtca cttttatatc aagaggcctt tgagcctggt tcaacaatga aggtgctaac
    25501 agtagcgtca gctatcgata acggaacctt tgacccaaat gcatattata ccaataatga
    25561 gtacgttatt gcagatgcga aaatcaatga ctggaccctc aatgcaggtt attcagctgt
    25621 gactctcaat tatgcgcaag gcttctccct atccagtaac gttgggatga ccttattgca
    25681 gcaacagatg ggagatgaaa aatggctaaa ttacctcact aagttccgtt ttggctaccc
    25741 aacgcgtttt ggtatggggg acgaggcgcc aggaatggta ccagaggata acattgtttc
    25801 tatcgccatg tcatcgtttg gtcaggggat ttctgcaaac caagcacaga tgcttcgtag
    25861 ttttacatcc attgcgaaca atggtattat gctagagcct aaatttatct cagctcttta
    25921 tgatcctaat acagatacag ctagagtttc ttcgaaagaa gaagtgggaa atccagtttc
    25981 tgaacaagct gccgatgata cacttcgcta tatgattaat gtcggtactg accctgttta
    26041 tggaacactc tactcacatg acttacaggg gcctgcaatt caggttgatg gctatgatat
    26101 tgcagtcaaa tcaggtacgg cggaaattgc cagcgaagat ggtcaaggat acattaaagg
    26161 cgcctatatc aactctgtag tagccatgat ccctgctgag gacccagaat ttatcatgta
    26221 tgtgaccatt cgccaaccgg aagtattaaa tgtcctgtct tggcgtgaca ttgtcagtcc
    26281 tacattgaaa gaagcgatgc tgttgaaaga caatttgaat ctggattcac ctgcaccagc
    26341 attggcacgg gtcgctaatg agacagagta tcaattgcca gacctcattg gtaaggcacc
    26401 aggcgagtcg gctgaggaac ttcgccgtca attagttcaa ccagttatcc ttggaaacgg
    26461 tgctgaaatt aaaaaagttt cagtcgaaaa aggaagtaag gtaatcgcca accaacaggt
    26521 tctactcctg acaaataaat tcgaagaaat gccagacttg tacgcaatca ccaaagagaa
    26581 tatggatata tttgctgaat ggactggtat cgaagtgacc tataaaggaa cgggttcaaa
    26641 agtagtcgac caaagtgtag aggtcggtac cgctttgaat aaaaccaaga aaataacaat
    26701 aaccttagga gactaacatg caattcgcac ttatgtcggg attggtagct tttctagcaa
    26761 ccgttctctt aatcccacga tttattacat tttatcaagc caaacgcatt gaggggcaac
    26821 agatgcacga agatgtgaaa caacatcagt ttaaggcagg tacaccaaca atggggggaa
    26881 cagtttttct cgttgttgcg attcttgtca gcttgttgtt tgcaacggcc tttcaactgt
    26941 tgacgggtgg tgtccttgcc atcctcttca tccttgccct ttatggtgta gtaggatttt
    27001 tggatgactt tttaaaaatt ttccgtaaaa taaatgaagg tcttaatcct aaacaaaagc
    27061 ttgctctaca aattttagga ggtattgtct tctactttgt ccacgtaaga ggagcaggtg
    27121 gcggagaatt gaatgtattt ggtcacatgg tacatttggg agttctctat ttcccatttg
    27181 ttctgttctg gctggtcggt ttttcaaatg cagttaattt gacagatggc attgatggat
    27241 tggcttctat ctcagttgtt atcagccttc tagcttactc tgtcatcgcc ttcaatgagc
    27301 aaaaatttga tattcttcta gtttgtgtga ccatgattgg tggcttgctc ggtttctttg
    27361 tttataaccg taaaccagcg aagattttca tgggggatgt gggaagcttg gctctcggcg
    27421 gtatgttggc aactatttca attgccctcc gtcaggaatg gactctcctc cttatcggcc
    27481 tggtctatgt cattgaaacg tcctctgtta tgttgcaggt ttcatatttt aaatacacca
    27541 aaaaacgctt tggagaaggt cgtcgtatct tccgtatgac tccttttcat caccatttgg
    27601 agcttggagg tttgaccgga aaagctgaaa aatggagcga gtggaaagtt gactttttcc
    27661 tctggtcagt cggtctcatc atgagcttga ttaccctagc tattctttat ctataaaatg
    27721 tcagaaacag cagaaatgct gtttttttac cttgacaaat atggtcgggg ggggggaata
    27781 gagagagaat tggtggagga taaaaatgga acaattcaat caagaacagt tatatggagt
    27841 ggttattcaa accatgacag ctgctagtca acttcctatg gttaaagtca atcgggaaga
    27901 atttttgaag actcgtttta aagatagtcc atatctagat aaaattattg cggatggacc
    27961 aacagcggtc ttcactacaa aagctttgcg taaggaagct gaaaaaatca ttaatgatat
    28021 gactacgaaa acatctttga tttctttcgc agctggttta ccggggaatc catttacagc
    28081 ggtggcggca ggtactgctg atatagctca gtattttggt tttgccttga atttgtcgca
    28141 acaaatcgct tatctttttg gtgaagatga attatttgtt ggtgaaggga aggaaatttc
    28201 agaagaggtt caaatccgca ttattgccta cattggtgtc atgtttggag caggtggttc
    28261 agcggttctt ctcaataaag tatccaagac agtcggagct aatatcggta aaaaagtagc
    28321 tatgcaggct ttgtaggctg ggcaaaaaga ccaacctcgc ttctcagggt tcgtgtcaac
    28381 atctcagcaa ttcgtgtttt acactccaaa tctggcctct atgactgatg tgaacagagt
    28441 tcgcttcatc tccaacctca aactgtctcc cagacagttt gagctgtgcg ggggtgggag
    28501 tgaaacagtc tggggataga ctgtttcagc tcaacaacta gaaat
//
LOCUS       DASGBY010000010        28038 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.010, whole genome shotgun sequence.
ACCESSION   DASGBY010000010 DASGBY010000000
VERSION     DASGBY010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28038
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.010"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(74..1384)
                     /locus_tag="U1396_000349"
     CDS             complement(74..1384)
                     /locus_tag="U1396_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HEM5341568.1"
                     /translation="MTILATLGVLLAIVAIIYWTSKNLHVIIAAPLASLIIILTNQMN
                     VLEVMLGKEQSYMAGLAGFLINNFAIFMLGSILARYMEASGATQTIANSILKVMGKDS
                     PYKGLLAITLIASILTYGGVSIFVVIFTLLPLSRPLFKELNINWALFPIPVFLGAGTY
                     TMTTLPGAPSIQNVIPTKVLGTSLTAAPVISLAASLTLLVFGLLYMAYCLKKSLANGE
                     TYTEEEDETAVVVADKTPNLFLSVLPLFSLIGTIFLMSKTPNVLAIGLLVSILLSALI
                     FYPYLPNQKEILNAATTASIVPAFATSSTVAFGTVLTLSAGFAVIQEWIQQIPGSPLI
                     SLSVSTALVSGIIGSSSGAVGIASSNFLPAYLEMGINPELLHRVVVVASAILTVVPQS
                     GVMITFHNLSKLSMKRGLKYSFILVTVGHLLALFVILLLAPLLY"
     gene            complement(1435..1923)
                     /gene="folK"
                     /locus_tag="U1396_000350"
     CDS             complement(1435..1923)
                     /gene="folK"
                     /locus_tag="U1396_000350"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEM5341569.1"
                     /translation="MKHLAYLSIGGNMGNRQAYLQAALDKLASHPGCQLGLVSNIYET
                     PAWGKTDQADFLNLACQVYTDLSAQDFLSACQNIEQELDRVRIEKWGQRTIDLDIIFW
                     DEEKIQEENLIVPHPYAHERAFVLNPLAEIASDYRHPILKKVVSDLLAELGEQKDIKI
                     FK"
     gene            complement(1920..2282)
                     /gene="folB"
                     /locus_tag="U1396_000351"
     CDS             complement(1920..2282)
                     /gene="folB"
                     /locus_tag="U1396_000351"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEM5341570.1"
                     /translation="MDKISLNKCRFYGYHGAFKEEQVLGQIFTVDCDLFVDLTAASQT
                     DNLEDTVHYGMVFETIKAVVEGKPYILIEKVAGVICQELFDQFPKVEKIRLAIYKENP
                     PIAGHYDSVGIELERERP"
     gene            complement(2275..3087)
                     /gene="folP"
                     /locus_tag="U1396_000352"
     CDS             complement(2275..3087)
                     /gene="folP"
                     /locus_tag="U1396_000352"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEM5341571.1"
                     /translation="MSIEQLANQVTIMGILNVTPDSFSDGGHYNEVESALVQVEKLLA
                     EGATVIDVGGESTRPGATFVSEEDEIARVVPIIRAIKENYDCLVSVDTYKTGTARAAL
                     EAGADILNDVWAGLYDGDMLALAAEYKVPIILMHNQKDESYADVVGEVKNFLAERAQA
                     ALDAGVSADQIWLDPGFGFSKNVQHNLDLLQGLEQITALGYPVLFGISRKRVVDYLLG
                     GNSLPTDRDQATAALSAWAVQKGCKMVRVHNVAANRDIVKVWDQLTSGGQHG"
     gene            complement(3096..3659)
                     /gene="folE"
                     /locus_tag="U1396_000353"
     CDS             complement(3096..3659)
                     /gene="folE"
                     /locus_tag="U1396_000353"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEM5341572.1"
                     /translation="MSKQEQIEQTIYQLLELLGEDPNREGLLDTPKRVAKMYLEMFNG
                     LEEDPKDQFTAVFSEGHEEVVLVKDIPFHSMCEHHLVPFYGIAHVAYIPSKGRVTGLS
                     KLARAVEVASRRPQLQERLTHQVAHALQDALEPEGVFVMVEAEHMCMSMRGIRKPGSK
                     TVTTVALGKYKEDAILRRELLSMIHNK"
     gene            3826..4308
                     /locus_tag="U1396_000354"
     CDS             3826..4308
                     /locus_tag="U1396_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5341573.1"
                     /translation="MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKL
                     EPGETPQACAIREIFEETGLTVTKHALKGVITFPDFTPNTDWYTYVFKITGFEGSLID
                     CNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE
                     "
     gene            complement(4357..5034)
                     /locus_tag="U1396_000355"
     CDS             complement(4357..5034)
                     /locus_tag="U1396_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HEM5341574.1"
                     /translation="MQLFNSIFSTANSNITLAQMSMVFGVSLSMGVLLAAVYKYKSNY
                     TKEFVITLSLMPALIAVIIALVNGNLGAGVAVAGTFSLIKFRSAAGSSKEMLAVLLAM
                     AIGLATGMGFLGLAVFMTVILSACILIFENISFAQVNQNRRHLLVTVPMNFDYDQFFE
                     NQFGKSCKQSDLLSLKYKKKKEALVLEYQVLLDKKITDKRLVDTVLSAGPLDVVLNKQ
                     MPKKKYL"
     gene            complement(5021..5764)
                     /locus_tag="U1396_000356"
     CDS             complement(5021..5764)
                     /locus_tag="U1396_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate polymerase domain-containing
                     protein"
                     /protein_id="HEM5341575.1"
                     /translation="MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATST
                     ITNIYFDNEDFDMIQDSLAKKNGREKIRMRVYDAIPSESSQAFLEIKKKENKIGYKYR
                     LTSNPVSVANYIENGVIDSTIKDDKVNSELEMLRERYGTIKPKMYIYYDRVSYKGIED
                     KKVRLTIDKNLLYRDYDVDAMEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQI
                     EKQSFSKYGNAYKLAHNITGEEVSQHAVV"
     gene            5957..6259
                     /locus_tag="U1396_000357"
     CDS             5957..6259
                     /locus_tag="U1396_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341576.1"
                     /translation="MYEFVLEYGSFPVKLIDGFVNNRSEIPDFLKEDEEMIARLNEIN
                     ELFHQLFLTIECKFDYIGKQFPDKIEQLRELYHPLADDLLAKYGNQIELKIEPFIL"
     gene            complement(6280..6546)
                     /locus_tag="U1396_000358"
     CDS             complement(6280..6546)
                     /locus_tag="U1396_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2087 domain-containing protein"
                     /protein_id="HEM5341577.1"
                     /translation="MNTQDIQEKFFREGKLIVIPKKLKSKQVLFAYLQEELAKKGSAF
                     TEKEVNAFLAEIYDDYAILRRYLVDYGYLSRDQYGLEYRIEEKR"
     gene            complement(6601..9000)
                     /locus_tag="U1396_000359"
     CDS             complement(6601..9000)
                     /locus_tag="U1396_000359"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEM5341578.1"
                     /translation="MLVSYKWLKELVDFDATSHDLSEKMSTTGIEVEGVEQKSAGLSK
                     LVVGQVVSAEPIPDTHLNTCQVNVGDEITQIVCGAPNVKPGIKVIVALPGARIAGNYK
                     IKKGKIRGVESLGMLCSLSEIGVSDSVVPKVYADGIYHLPEDAVVGEPVFSYLDLDDE
                     IIELSITPNRADALSMRGVAHEVAAIYDSKVNFKPVVLEESDKKASDVIEVAIESDKV
                     AAYTARVIENVTIAPSPQWLQNLLMNAGIRPLNNVVDITNYILLYFGQPMHAFDFDKF
                     DGKKIVARQAKEGENLVTLDGEERDLITDDIVISVGDKAVALGGVMGGANTEIDNNSK
                     TVVLEAALFDGKSIRKTSGRLNLRSESSSRFEKGINVATLTEAMDTAAAMIAELAGGQ
                     VLSGIVSAGSVDTSDVPVTATIDYVNRSLGTNLDYAQIADIFRRLGMETTGDASQFTV
                     AVPRRRWDIRIPADLVEEIARIYGYNNLPTTLPKEDGTAGELTLTQNIRRQVRSLAEG
                     AGLTEIISYALTTPEKAVEFAARPTTVTELMWPMTVDRSALRQNMVSGMLDTVAYNVA
                     RKNKNLALYEIGKIFEQSGNPKEDLPQEINKFALVLTGLVAEKDFQTPAVPVDFFHAK
                     GILEAIFGHYKLAVDFVATSEIAALHPGRTAEIHLNGAVIGFVGQVHPQTAKDYGIPE
                     TYVAEINLDAIEEALQPAQPFTEISKFPAVSRDIALLLSSDVKHQDVLDAIAGAGVKR
                     LTKVTLFDVYAGSNIEAGKKSMAYNLTFQNPADSLTDEEVAKYMEKISKALVELGAEI
                     R"
     gene            complement(9002..9523)
                     /locus_tag="U1396_000360"
     CDS             complement(9002..9523)
                     /locus_tag="U1396_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341579.1"
                     /translation="MQIDPICLEEVSVLQELAKQTFAETFAHDNDPKELEAFFEESYS
                     LEVLTSELSDPNCQHYFLRIDHQIAGYLKLNQGPAQTEQELENAFEIQRIYLLQAFQG
                     RGLGKVLFEFALEKAEQSSCDWVWLGVWEHNYKAQKFYSKYGFEKFGQHEFAVGDKID
                     VDWLLKRPLHQKG"
     gene            complement(10052..11095)
                     /gene="pheS"
                     /locus_tag="U1396_000361"
     CDS             complement(10052..11095)
                     /gene="pheS"
                     /locus_tag="U1396_000361"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEM5341580.1"
                     /translation="MSNIEQQLAELSQTTLEKLKEIQHQGEKELQDLRVAVLGKKGSL
                     TDLLKGLKDLSNDMKPIVGKQVNEVRDVLTTAFEETAQKVAAAKIQQQLASETIDVTL
                     PGRQVKVGKRHVLTQTSEEIEDIFLGMGFQIVDGFEVEKDYYNFERMNLPKDHPARDM
                     QDTFYITEEILMRTHTSPVQARTMDQHDFSKGALKMISPGRVFRRDTDDATHSHQFHQ
                     IEGLVVGENVSMGDLKGTLEMIIKKMFGEERQIRLRPSYFPFTEPSVEVDVSCFKCGG
                     DGCNVCKKTGWIEILGAGMVHPQVLEMSGIDSTKYSGFAFGLGQERIAMLRYGINDIR
                     GFYQGDVRFSEQF"
     gene            complement(11550..13274)
                     /locus_tag="U1396_000362"
     CDS             complement(11550..13274)
                     /locus_tag="U1396_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001137776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HEM5341581.1"
                     /translation="MPRLVDLRKKPYCLNDEQITWVEDTLAHLTDEEKIGQLFVNLFF
                     FGGDAFSGNNLSNQELMNRYHIGGARYMNGSPEQVQGLINELQSYSKIPLLVAANCDS
                     GGDGAVKGGTYISSGAQSEASRDPRIPYLAGLVSAREETALGVNVNFDPCVDIVQNWR
                     NTIVNTRAYGTNADDVIAYTSAYLKGLTAERDVIQCIKHFPGDGTEERDQHLVLGVNE
                     LSPEEWDKSFGRVYRHHIEAGVEMIMAGHIALPYYQQRLNPTLKDEDILPATLAPELI
                     QDLLKEKLEFNGLVITDASHMLGMTAAMRREDYVPAAIAAGCDMFLFFNNLEEDFEFM
                     LNGYRKGVITEERLHDALRRILGLKAKLNLHIKQAEGTLLKSADELAIIGCEEHLAWQ
                     REAADKAITLLKDTQKNLPISPETHRRIRLYYLEGEKEGIMAASTEVVDNLKAALEAR
                     GYEVTVNDGTTRIKGKTLQYREEVDLALTVANVIGYGAQNNYRIQWKTAMSNEVPWYV
                     HEVPTIFVSLNYTTHLHDVTMVKTAINAYHHNINTIESLLDKLEGKDDFYGVPNENVW
                     ANKWQAKL"
     gene            complement(13285..15075)
                     /locus_tag="U1396_000363"
     CDS             complement(13285..15075)
                     /locus_tag="U1396_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
                     /protein_id="HEM5341582.1"
                     /translation="MTHLVDLRKKPYSLDEEAISWIEETIAQMTLDEKIGHLFVNMGS
                     QRTEEYLTGVLNDYKIAAVRYNPGPAADIWEQNYILQTKSKIPLLIAANTESGGNGAV
                     TDGTKIGDEIKIAATADPRYAYEMGKVAGLEAAAVGCNASFAPIMDLSRNWRNPIIAN
                     RTWGANVDQVIELSKEYMRGIMEHGIVPFAKHFPGDGIDERDHHLSFASNPMTKSEWM
                     ETFGRIYGEMADAGLPGIMAGHIHLPNVEKEMHPERELDDMLPASLNKTLLDELLRGE
                     LGYNGAIVTDASHMIGMTASMSRRELLPTAIEAGCDLFLFFNDPEEDLQWMKEGLENG
                     LLSEERLHDALRRTLGLKAKLGLHLFEGRRQEIMMPKEEALALIGRDEAKQLAKEVAD
                     KAITLVKAKQEGIFPVNPERYKRILLVEVDGYKGGFGAMINAGKKRAADTLKELLEAR
                     GHQVSIWENTEARIAKLPEEERPAAIANVYASKRPIAEITDNYDLIINLVDVNSGGTT
                     QRIIWPAAKGTPDQPFYVHEIPTIVVSVQHPFALADMPQVATYINAYDGLPVTLEALV
                     AKLAGESDFTGVSPVDAYCGLVDTQIWRGK"
     gene            complement(15125..15925)
                     /locus_tag="U1396_000364"
     CDS             complement(15125..15925)
                     /locus_tag="U1396_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5341583.1"
                     /translation="MMKTDYVFCVDSDGCAMDTMTYKHKLFFGPLAADVFDVKDREPF
                     LAEWNRVNLYSRERGINRFVGLVKGLDFAGVTGIDNLKNWVATTDSLSNASLERLIEE
                     TPSKDLELALEWSTQVNQAIKHYSGPVLAFIGVHKGLEKLSQLGKVYVVSSANKEAVE
                     EEWTDQGLLDFVTELYCQDRGKKEDVIKILIEEGYCPDKIMMIGDSPGDLKAAELNGV
                     HFYPILVGQEMQSWADLTETIADEFAHQAFTGEKETELIQAFWNNLDD"
     gene            complement(15925..16764)
                     /locus_tag="U1396_000365"
     CDS             complement(15925..16764)
                     /locus_tag="U1396_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM5341584.1"
                     /translation="MTRVIEFKDKVVVITGAGGVLCGYLAKEFAKAGAKVALLDLNEA
                     AAQVFVDEIAAAGGVAKAYKSNVLSKENLEGVRQQVLADFGPVDILINGAGGNNPKAT
                     TDNEFHEIGLPADTKTFFDLDEAGINFVFNLNYLGTLLPTQVFAQDMIGRSGANIINI
                     SSMNAFTPLTKIPAYSGAKAAISNFTQWLAVHFSKVGIRCNAIAPGFLVTNQNRGLLF
                     DESGQPTARANKILTNTPMGRFGEAEELVGGVFFLADENLASFVNGVVLPIDGGFSAY
                     SGV"
     gene            complement(16766..17866)
                     /locus_tag="U1396_000366"
     CDS             complement(16766..17866)
                     /locus_tag="U1396_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HEM5341585.1"
                     /translation="MKMSFRWYGKKDPVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLE
                     NILELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDELIENYKTSIRNVGAAGIPVVC
                     YNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVADDLNLPGWDSSYSKEEMKA
                     IIENYRQNISEEDLWANLEYFIKAILPTAEEAGVKMAIHPDDPPYGIFGLPRIITGQE
                     AVERFLNLYDSEHNGITMCVGSYASDPKNDDLAMTEYALKRNRINFMHTRNVTAGAWG
                     FQETAHLSQAGDIDMNAVVKLLVDYDWTGALRPDHGRRIWGDQTKTPGYGLYDRALGA
                     TYFNGLYEANMRAAGKTPDFGITVKTVGNKES"
     gene            complement(17881..19281)
                     /gene="uxaC"
                     /locus_tag="U1396_000367"
     CDS             complement(17881..19281)
                     /gene="uxaC"
                     /locus_tag="U1396_000367"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HEM5341586.1"
                     /translation="MSFNDKNFMLKNEPAKELYGKIAELPIYDFHCHLDPKEIFEDKV
                     YEDIVDLWLGGDHYKWRLMRANGISEEEITGSASKLDKFKAWARTLERAFGNPLYHWS
                     HLELRQVFGVEELLTEENAERLYHQLNAYLQEHRVSPRKLIADARVTFIGTTDHPLDS
                     LEWHKRLAEDSTIDTVVAPTFRPDEAFIEHRNFNLFMKRLEEVTGVAVRDFASFVEAL
                     GQRVSYFAQHGCRASDISFTAISYEEATLEELDEILLARLAGKEAGQSSINKWQTAIF
                     RELCRLYKKHGFVTQVHFGALRNNHTGLFEKLGADVGVDSIGDQTCLTVNLNRLLDNL
                     VKENALPKMIWYNLNPSYNIALANTLANFQSNEEGLRSQLQFGAGWWFNDTKLGMIDQ
                     MNAYAEQGMLANFVGMLTDSRSFLSYQRHDYFRRILATYVGQWIVDEEVPEDYNRLGQ
                     FVEAISYYNAKEFFEQ"
     gene            complement(19283..19903)
                     /gene="eda"
                     /locus_tag="U1396_000368"
     CDS             complement(19283..19903)
                     /gene="eda"
                     /locus_tag="U1396_000368"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEM5341587.1"
                     /translation="MLKQLKENYFFAVIRGKDEEDAKEIARHAILGGIRNIEITFSTP
                     NAATVIKELQEEFSYDSSVVIGAGTVMNLKLAQAAIDAGASFLVSPHFDKEIQDLAQE
                     AEVFYFPGCATATEIVTASQAGCPIIKLFPGGVLGPGFIKDIHGPVPQVDLMPSGGVS
                     VENVADWKKAGACAVGVGSALASRVQAEGYESVTTIARSFVAALEG"
     gene            complement(20026..20742)
                     /locus_tag="U1396_000369"
     CDS             complement(20026..20742)
                     /locus_tag="U1396_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HEM5341588.1"
                     /translation="MAKPLVEKASERLLELILERGYEVGDKLPNEYELAQDLEVGRST
                     VREAVRSLATRNILEVRQGSGTYISSKKGVSEDPLGFSLVRDRVKLTTDLFEVRYLLE
                     PRIAERVAQFASDEDIARLEEIVLAIEEAVAAGDTKHLELDVKFHCMLAEMSGNLAMT
                     SLMPVINQSIHLINENYSNRQMKSDSLQAHRNILMAIKQRHPVAAYDSMLAHIISVRQ
                     VVLSEWFDKDMTLHGLNDHK"
     gene            complement(20788..22587)
                     /gene="uidA"
                     /locus_tag="U1396_000370"
     CDS             complement(20788..22587)
                     /gene="uidA"
                     /locus_tag="U1396_000370"
                     /EC_number="3.2.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
                     /protein_id="HEM5341589.1"
                     /translation="MLYPIQTKTRSVYSLNGIWKFKQGNNDVHTLLDTDEVMVVPSSF
                     NDLVVDKDKRRFVGDNWYELMVALPVVSADEELVVRFGSVTHQAKVYADGQLIGEHKG
                     GFTPFECLIPSNLYDADQFRLTVCANNELNYTTLPVGNYSEEVDENGQIVKTVKENFD
                     FFNYAGIQRTVHLYKRPQNRIEDIVIRTELNQDLTQAVVNVDVKTVGQYDSIRMSILD
                     QEGQEVGLLENGQMVIEHPRLWEVLDAYLYTAKVELFDGENLLDTYSEQFGIRSVAVE
                     NGQFFINGKPFYFKGFGKHEDTFINGRGFNEAANLMDLNLLKDIGANSFRTSHYPYSE
                     EMMRLADRLGIVVLDEVPAVGLFQLFNAALNLTGDSEEVKSTWEVMQTKDAHELVIDE
                     LIARDKNHPSVVMWVVANEPAGHEKGARAYFEPLIQRMRDRDPSKRPVTLVNIMTATP
                     DKDEVMDLVDVVCLNRYYGWYVAHGDLKAAEKGLRQELETWQKLYPDKPILITEYGAD
                     TLQGLHSMWDIPYTEEFQVDYYDMNHRVFDSIPNLVGEQVWNFADFETTVGIIRIQGN
                     HKGLFSRNRQPKQIVREIKKRWTAIPNYHYKRK"
     gene            complement(22603..23631)
                     /locus_tag="U1396_000371"
     CDS             complement(22603..23631)
                     /locus_tag="U1396_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEM5341590.1"
                     /translation="MKKILAFGEVLLRLSPPQYQTLTQATSLDCQFGGSELNVLASLA
                     QLGHSVELVTALPKNEVGKMAEHFLFARQIGQKYVIRNEGRLGLYYYQKGFSLRPSQV
                     TYDRDYSAFSLSKEEDYDLEGMFDGVDWFHVSGITVALNPDIYRLAFRLMEMAKGQGV
                     KVSFDLNYRESLWSSFEEAREKLSPFVGLADICFGLEPIQLFNESGKDLKDELGLKRP
                     YENKEVLLAVVKGLAETYSLQGLAFTQREMTYNNEYLLKAYLYQDGILYETEKESIQV
                     LDRVGTGDAFTAGIILGYLQEKSPREILDLGMASFQFKHTIEGDINVISQSDIDLLLK
                     KGSREIKR"
     gene            complement(23687..25240)
                     /locus_tag="U1396_000372"
     CDS             complement(23687..25240)
                     /locus_tag="U1396_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5341591.1"
                     /translation="MEKHVEQRVEDVTYNKAKLWQIILFAMNNSSTNIYLVAFTFVTY
                     LSTGVLGLAALFVSQLMGYIRIFDGFIDPTIGVIIDKTDTKFGKYRPILVLGNIITAA
                     SLFMMLGLSGVNESLRLPLFILVLIIHKIGYSLQQTITKAGQVALTNDPKQRPIFNIV
                     DGIATTVLMTGSQVVVSGTLVPKHGGFTPSFFQELFLGVVVISAVLGILAIIGIWEKD
                     NKKYFGLGEKTQETKLKDYWKVIKGNKPLQVLSISAAFVKFVAQLFGDSVIGVMLYGI
                     IFGDYALSGKMSMLLILPGILVTVGAAQLARRKGLRFAYITALQLGIAGLVILAAMLF
                     SAKPGMLDLTNWNLYTIGFFVVYIVARYASSAPSGLVLTMGADITDYETSVSGRYLSG
                     MIGTIFSLTDSIASSFAPMVVGFVLAGIGFGKEYPTVETAFSTDLRMALIVLLTVIPA
                     AVLSVSLFLMKFYKLDREEMARIQEKIHVMKAAKDEERVRAIAKNVPLSDMDYVDVTQ
                     YKVDQYDDK"
     gene            complement(25427..26266)
                     /locus_tag="U1396_000373"
     CDS             complement(25427..26266)
                     /locus_tag="U1396_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEM5341592.1"
                     /translation="MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYV
                     NQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGAGAFIINGNQTDLDASVASVPYG
                     DNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
                     VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALD
                     KNKRIRYRVTLVYAESEDLVPVGSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIA
                     VNQ"
     gene            complement(26296..26487)
                     /locus_tag="U1396_000374"
     CDS             complement(26296..26487)
                     /locus_tag="U1396_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM5341593.1"
                     /translation="MDKDNLSYVGKNLILVAVVLLIAILVFVLGLMVGYGVIGDGDNV
                     FAVLSPAKWQELIGKFTGK"
     gene            complement(26480..27763)
                     /gene="murA"
                     /locus_tag="U1396_000375"
     CDS             complement(26480..27763)
                     /gene="murA"
                     /locus_tag="U1396_000375"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM5341594.1"
                     /translation="MDTIIVTGSKNGLKGQVEIEGAKNAVLPLLAATVLASQGQTKLT
                     QVPILSDVYTMNNVVRGLGVRVKFDEETKTIDIDATGKLGSETPYKYVSQMRASIVIL
                     GPILARNGYAKVSMPGGCTIGSRPIDLYLKGLQAMGAKIKQRAGYIEASAENLQGAHI
                     YLDFPSVGATQNLMMAATLAQGTTVLENAAREPEIVDLAIFLNKMGAKVKGAGTETIT
                     ITGVEELTGAEHQVVQDRIEAGTFMVAAAMTGGDVLVKDAVWEHNRPLISKMLEMGVE
                     VTEEAEGIRVRSQVDKLKPVTVKTLPHPGFPTDMQAQFTALMAVAKGESTMIETVFEN
                     RFQHLEEMRRMDLHSEILRDTAIITGGLALQGAQVMSTDLRASAALILAGLVAEGETI
                     VGKLTHLDRGYYRFHEKLAALGATIERVSGEDENG"
     gene            complement(27788..28012)
                     /locus_tag="U1396_000376"
     CDS             complement(27788..28012)
                     /locus_tag="U1396_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HEM5341595.1"
                     /translation="MVISILQFFSHILFIYLAHHLLVTTVDWSRWLKVTGDNQRKINL
                     LILFLAIALGYLVSTFFLELLMVGRSFANM"
BASE COUNT         8108 a         6719 c         5213 g         7998 t
ORIGIN      
        1 aaatatttga gtagagattt taactgaatg atattgccca ttggcagggc ttttatttgt
       61 ttgttaatca atcctaatat agcaaaggtg ccaacagtaa aatcacaaat aaggctaaca
      121 aatgcccaac tgtcactagg ataaatgaat acttgagtcc acgtttcata cttaatttcg
      181 aaagattgtg gaaggtaatc atcacgccag actgaggcac aactgtcaag atagctgatg
      241 caacaactac tacacgatgc agcaactctg gattaatccc catttctaaa taggcaggaa
      301 ggaaattact tgaagcaata cctactgcac cagaagatga accgataata ccactaacca
      361 atgctgtcga aacagataaa ctaatcagcg gcgatcctgg tatttgttga atccattctt
      421 gaatgactgc aaaacctgct gacaaggtta acaccgtccc aaatgctact gtactagaag
      481 ttgcaaaagc aggcactatg gatgctgttg tcgcagcatt caaaatttct ttttgatttg
      541 gcagatatgg ataaaaaatc aaggctgata gaaggataga gaccaacaat ccgattgcta
      601 ggacattcgg agttttactc attaggaaaa tcgtcccaat aagactgaat agaggcaaga
      661 ctgataaaaa tagatttggt gtcttatcag ctaccactac tgcagtttca tcctcttctt
      721 ctgtatacgt ctctccattt gctagacttt tcttgaggca gtaggccatg tagagcaagc
      781 caaatactaa tagcgtcaag ctggctgcca aactgataac gggtgccgcg gtcaagctag
      841 ttcccaaaac ttttgtcgga ataacattct ggatggaagg tgccccagga agagttgtca
      901 tcgtataagt acctgctccc aaaaagacag gaatcggaaa aagtgcccag ttgatattca
      961 actctttaaa gagtgggcgt gaaaggggaa gcaaggtaaa aataactaca aaaatactca
     1021 caccaccata ggtcagaatg gaagcaatca aagtgatggc taacaaaccc ttatagggac
     1081 tatcttttcc cattactttc aaaatgctat tggcaatcgt ctgcgtagct ccacttgcct
     1141 ccatataacg tgccaagata gaccccaaca taaagatggc aaaattatta atcaaaaaac
     1201 ctgctaagcc cgccatataa gactgctctt tgcccaacat aacttccaaa acattcatct
     1261 gattggtcag aatgatgatt aaactagcta gtggtgcagc aatgataaca tgtaaatttt
     1321 ttgatgtcca ataaataatg gctacaatag ccaataaaac tcctaaagtt gctaaaattg
     1381 tcataaaact cctttatcta ttctatcctc taataaacct agtatcagag gcaactattt
     1441 gaaaattttt atatcttttt gttcccctag ttctgcaagc aagtccgata ccactttttt
     1501 caaaattggg tgacggtaat cagaagcaat ctcagcaaga gggttgagaa caaatgctct
     1561 ttcatgggcg tagggatggg ggacaatcag attctcttct tgaatcttct cctcatccca
     1621 aaaaataata tccaaatcaa tggtccgttg tccccatttt tcaatccgta ctcggtccaa
     1681 ctcttgttcg atgttctggc aagcgcttag aaaatcttga gcagacaaat cagtatacac
     1741 ttgacaggct agattgagga aatcagcctg gtcggtcttg ccccaagctg gagtttcata
     1801 aatattggaa actaagccaa gctggcaacc tggatgactg gctaatttgt ctagagctgc
     1861 ctgtaaatag gcttgccgat tgcccatgtt ccctccgata ctgagatagg ctagatgctt
     1921 catggtcgtt cacgctccaa ttcaattccg acagaatcat agtgtccagc aataggcgga
     1981 ttttccttgt aaatggccaa gcgaatcttc tccacctttg gaaattgatc aaaaagctcc
     2041 tgacaaataa cacctgctac cttttctata aggatgtagg gcttgccttc cacaactgct
     2101 ttaatggttt caaagaccat accatagtga actgtgtctt ctaaattgtc agtttgtgaa
     2161 gctgctgtca ggtcaacaaa caaatcacag tcaaccgtga aaatttgacc aagaacttgt
     2221 tcttctttga aggcaccatg gtagccgtag aaacggcatt tattaagtga aatcttatcc
     2281 atgttgacct ccagaagtca attggtccca aaccttaacg atatcacggt tggcagcgac
     2341 attgtgaaca cggaccattt tacagccttt ttgaactgcc caggcagaca aggctgccgt
     2401 tgcttgatcg cggtcagtcg gtaagctatt gcccccaagc agataatcca ccacgcgctt
     2461 acgagatatt ccaaatagaa cgggataacc aagagcagta atctgttcca aaccttgtaa
     2521 gagatcaagg ttatgttgga cattctttga aaagccaaat cctggatcca accaaatctg
     2581 gtctgcggaa acaccagcat caagtgctgc ttgggcacgc tcagctagaa agtttttgac
     2641 ctctccaaca acatccgcat agctttcgtc tttctggttg tgcataagaa tgattggtac
     2701 cttgtactcc gcagccaggg ccaacatatc tccatcataa agtcctgccc agacatcatt
     2761 taaaatatct gcgcctgctt ccaaggctgc acgtgcagtt cctgttttat aggtatcgac
     2821 gctgacaaga cagtcatagt tttctttgat agcgcggata atcggaacca cgcgagcaat
     2881 ctcgtcttct tcagacacaa atgttgcacc tggccgagtg gactcaccac caacatcaat
     2941 gacggtagca ccctcagcca acaacttttc tacttgtacc aaggcagact ccacctcatt
     3001 atagtgacca ccatctgaaa atgaatctgg cgtcacattg agaatcccca taatggttac
     3061 ttgattcgct aactgttcga ttgacataga acctcctatt tattgtgaat catggacaag
     3121 agttcacggc gcaagatggc atcttccttg tatttgccaa gagcaactgt ggtcactgtc
     3181 ttactacctg gcttgcgaat accacgcatg ctcatgcaca tgtgctctgc ttcgaccatg
     3241 acaaaaacac cttctggttc aagggcatct tgaagggcat gggcaacctg atgggtcaag
     3301 cgttcctgca attgagggcg acgacttgct acctccactg cacgcgccaa tttgctaaga
     3361 cctgtcacac gccccttact cggaatataa gctacatggg caatgccata aaagggtacc
     3421 aaatggtgtt cacacataga atgaaaagga atatccttga ccaaaacaac ctcttcatga
     3481 ccttctgaaa agacagctgt aaattggtct ttgggatcct cttctaggcc gttaaacatt
     3541 tctaaataca tcttagcgac ccgtttaggc gtatctaata aaccttcacg attcgggtcc
     3601 tcacccaata attctaataa ttgataaatt gtttgttcga tttgttcttg ttttgacata
     3661 gtgcatccta aatagtttga tgttcttatt atacctcaaa aactgttttc agaaaagggc
     3721 tttcagtatg ctaatcctaa aactgtcccc taccagagca acaagcaggt gtccctactc
     3781 ccacctttgt ggtataatag gataaatcaa ctacaaggag cctctatgac caagaaaccc
     3841 gtccaactcg ctacgatttg ctacattgat aatggtaagg aatttcttct ccttcatcga
     3901 aacaagaaag aaaacgatgt ccatcaagga aaatggattg gagttggtgg caaactagaa
     3961 cccggcgaaa cgccacaggc ttgtgccatt cgagaaatct ttgaggaaac tgggcttact
     4021 gtaacaaagc atgctctaaa aggagtgata accttcccag actttactcc aaacacagac
     4081 tggtacacct atgtctttaa gataactggt tttgaaggaa gtcttattga ctgcaatgaa
     4141 ggtgacttag agtgggttcc ctatgaccaa gtcttgtcca aaccaacttg ggagggcgac
     4201 cggcattttc aagaatggct attagaggac aaaccatttt tttccgcttg cttccgctat
     4261 gatgggggca aactgcttga ttacagtgtt gatttttatg aagaataagc taataaaaaa
     4321 cgaaaaaagc cttggaaatc cagggcttct ttgatattac aaatacttct tcttcggcat
     4381 ttgcttgttt aatacgacat ccaagggacc ggctgacaat actgtatcta ccaaacgttt
     4441 atctgtaatt ttcttatcaa gaaggacttg atattctaaa acaagtgctt cttttttctt
     4501 tttgtattta agggataata aatcagactg cttgcaagat ttaccaaatt gattttcaaa
     4561 aaattgatcg tagtcaaaat tcattggcac tgtcaccaag agatgacgac gattttgatt
     4621 gacttgggca aagctgatat tttcaaaaat caagatacaa gcagatagga tgaccgtcat
     4681 gaagacagcc aaacctagga agcccatccc tgtcgctaga ccgattgcca tcgctaagag
     4741 gactgcaagc atttcctttg aagaacctgc tgctgagcgg aatttaatta gactgaaagt
     4801 ccctgctact gcaacacccg ctcctaagtt accattaact aatgcaataa taacagcaat
     4861 caatgccggc attaaactta gtgtgatgac aaattccttt gtataattag atttatattt
     4921 ataaacagcc gctaagagta cccccatgga tagactaact ccaaaaacca tggacatctg
     4981 cgctaaggta atattgctat tggcagttga aaagatacta ttaaacaact gcatgttgac
     5041 ttacttcctc tccagtgatg ttgtgggcaa gcttataggc attgccatat tttgaaaatg
     5101 attgcttttc gatttggtat ttttcgagca gggctaccaa ccagtctggt cgttcttctg
     5161 gaacttttac ttccatgatt actttggttg ggtctaatag gttcttacca aatttacctt
     5221 ccattgcatc cacatcgtag tctcgataaa gtaagttctt atcgattgtg agacgaactt
     5281 ttttgtcttc gattccttta taggatacgc gatcgtagta gatatacatc ttcggcttaa
     5341 tagtcccgta gcgttctctc aacatttcga gttctgagtt taccttatca tccttgattg
     5401 tggaatcaat cactccattt tcgatataat ttgctacaga aacagggttt gaagttaaac
     5461 ggtatttata gccaatttta ttttcttttt tcttaatttc aagaaaggct tgactcgatt
     5521 cagatggtat cgcatcatag acacgcatac gaattttctc acgtccattc tttttggcaa
     5581 gtgaatcttg aatcatatca aaatcttcat tatcaaagta gatattggta atcgttgatg
     5641 tcgcaaactc atctgccatc atatactgac gaagttcctt ttctaaaagt tcaaaagttt
     5701 ttttatcaac gatatattta gtctctttac gcttaaactg cttttgtacg attcttgttt
     5761 tcattattgt gcctcttcta tcctaaattt ttacaggtcc ctgtcttgtt tacaagatat
     5821 agtctaccga cttagcttta aatgaaactg aaaataaaat taaacaaaac ttaaactgca
     5881 ataaagttga aattcttttg tcacattcta atctatgcta caatagtcct atcaatagta
     5941 aggcaaggag aaacccatgt acgaatttgt cctagaatac ggctctttcc ccgtaaaact
     6001 catcgacggt tttgtcaaca atcgctcaga aattcctgat tttctcaaag aagacgaaga
     6061 aatgattgcc cgcttgaacg agatcaacga actcttccac caacttttct taaccatcga
     6121 atgcaagttt gactatatcg ggaaacaatt ccctgacaag atcgaacaac tacgagaact
     6181 ctatcatccc ctggcagacg atttactagc caagtatggc aaccagatag agttgaagat
     6241 tgaacccttt attttgtaag acaaaagaga tgaccgcaat catctctttt cttctattct
     6301 gtattccaaa ccatactggt cacgcgatag gtaaccataa tccaccaagt agcgtctcaa
     6361 tatagcatag tcatcataaa tctcagctag aaaggcatta acttcttttt ctgtgaatgc
     6421 cgagcctttc ttagccaact cttcttgtaa ataggcaaac aagacctgct tactttttaa
     6481 ttttttagga ataacgataa gcttgccttc tcgaaaaaat ttttcttgaa tatcttgagt
     6541 gttcatactt ccctccaaaa aatcctagcc cgctgactag gatttcacaa gatttacatg
     6601 ttaacggatt tcagctccaa gctcaaccaa agccttacta attttctcca tatacttagc
     6661 cacttcctca tccgtcaggc tatccgcagg attttggaag gtcaggttat aagccataga
     6721 cttcttacca gcctcaatat tgctacccgc atagacatca aagagggtca ctttagtcaa
     6781 gcgtttcacg ccagcaccag caatggcatc caggacatcc tgatgtttaa catcactgct
     6841 caagagcagg gcaatatcac ggctaaccgc tgggaattta gagatttcgg taaatggctg
     6901 agcaggctgg agagcttctt caatcgcatc cagattgatt tcagccacat aggtctcagg
     6961 aataccgtag tccttggccg tttgaggatg tacctgaccg acaaagccga tcacagcccc
     7021 attcaaatgg atttcagctg tacgaccagg gtgcaaggca gcaatctcac tagtcgccac
     7081 aaagtcaaca gccaacttat aatgaccaaa gattgcttcc aaaatccctt tggcatggaa
     7141 gaaatcaact ggtacagctg gtgtctggaa gtctttctca gctaccaaac cagtcaagac
     7201 aagggcaaac ttattgattt cttgtggcag gtcctctttt ggattgccag actgttcaaa
     7261 gattttaccg atttcgtaaa gagccaagtt cttgttctta cgagccacat tgtaggccac
     7321 tgtgtctaac ataccagaca ccatgttctg acggagggca gagcgatcaa cagtcatagg
     7381 ccacatgagt tcggtgactg tggttggacg agccgcaaac tccacagcct tttcaggcgt
     7441 tgtcagagcg taagaaatga tttctgtcag acctgcacct tctgccaggc tacgaacttg
     7501 acgacggatg ttctgggtca gggtcaactc acctgctgtt ccgtcctctt tcggaagagt
     7561 ggtcggcaga ttattgtaac catagatacg agcgatttcc tctaccaagt ctgctggaat
     7621 gcgaatgtcc caacgacgac gcggtactgc tactgtaaac tgacttgcat cgccagttgt
     7681 ttccatacct aaacgacgga aaatatctgc gatttgggca tagtccagat tggtcccgag
     7741 cgagcggttg acgtaatcaa tggtcgctgt gactgggaca tccgaagtat ccacgctgcc
     7801 cgcagaaacg atgccagaca agacctgacc gccagccagt tccgcaatca tagcagccgc
     7861 tgtatccata gcctccgtca aggtcgctac gttgataccc ttttcaaatc gagaagaaga
     7921 ctcagagcga aggttgaggc gacctgaggt cttgcggata gacttgccat caaagagggc
     7981 agcttccagc acaaccgtct tagagttgtt gtcaatttct gtattagcac cacccatgac
     8041 tccaccgagg gcaaccgcct tgtccccaac ggaaatgacg atgtcatcgg taatcaagtc
     8101 acgttcttcg ccgtcaagag ttaccaagtt ctcaccctct tttgcctgac gagccacgat
     8161 tttcttgcca tcaaacttgt caaagtcaaa ggcgtgcatt ggctgaccga agtagagcaa
     8221 gatgtagttg gtgatgtcca ccacattgtt gagcgggcga atacctgcgt tcatgagcag
     8281 gttttgcaac cactgcgggc tcggtgcgat ggtcacattt tcaatgacac gagccgtgta
     8341 ggcagccacc ttgtctgact caatagccac ttcaatcaca tcgctggcct tcttgtcgct
     8401 ttcttccaag accactggct tgaagttgac cttgctgtca tagatagccg ccacttcgtg
     8461 agccacgcca cgcatagaga gagcatcggc acggtttggt gtgatggaca gctcgataat
     8521 ctcgtcgtcg aggtccaggt atgaaaagac tggctcaccc acgactgcat cttctggcag
     8581 gtggtagatt ccatccgcat agacctttgg cacaactgag tcggacacgc cgatttcgct
     8641 caatgagcag agcatcccca aggactcaac accgcggatt ttgcctttct tgatcttgta
     8701 gttgccagcg atacgagctc ctggcagagc gacgatcacc ttgatcccag gcttgacatt
     8761 cggagcaccg caaacgattt gcgtgatttc gtcacccaca ttgacctggc atgtattgag
     8821 gtgggtatct ggaattggct cagcagacac aacctgaccg acaaccaact tagacaggcc
     8881 agcactcttt tgctcaaccc cttctacttc aattcctgtt gttgacattt tttcagacaa
     8941 gtcatgactt gtcgcatcaa agtcaaccag ttcttttaac catttgtaac ttactaacat
     9001 attatccttt ctggtgcaaa ggccgtttca gtagccaatc cacatcaatc ttatcaccga
     9061 ccgcaaattc atgctggcca aatttttcaa atccgtattt ggaatagaat ttctgagcct
     9121 tgtaattatg ttcccaaact cccagccaga cccagtcaca actagactgc tctgcttttt
     9181 ccaaagcaaa ttcaaacaag accttcccaa gaccgcgacc ttgaaaagcc tgcaagagat
     9241 agatacgctg gatttcaaag gcattttcca actcctgctc cgtctgggca ggaccctggt
     9301 taagcttaag ataaccagct atctgatgat ctattcttag aaaatagtgc tggcagttgg
     9361 gatccgataa ctcactagtc aagacctcca aggaataaga ctcctcaaag aatgcctcca
     9421 gttccttcgg gtcattatcg tgagcgaagg tctctgcaaa agtctgctta gccagctcct
     9481 gcaaaacaga aacctcttcc aaacatatag gatcaatctg catctcattg cctctcattt
     9541 ctaactgggc taggaaagtc gctcaatagc gatttccgtt cacctactcc agcggtgtta
     9601 cgacggttca aggttgaaaa caacattttt ttcaaccttg aacctagtga ggggagtagg
     9661 tagaccgcca tagcggctac cgtttctcgt actgaacacc taacaaactt cctaaattac
     9721 gacggatttc aagcaaaacg atatttttag cttgaaatcc tagtaaggta gctaggaaag
     9781 tcgcagagca gctatttcca caccttaaaa tagtgcgaga ttacgacggt atttcaagcg
     9841 aaacgatatt tttcgcttga aagcctagta aggtagctag gaaagtcgca gagcagcgat
     9901 tcccacacct taaatagtgc gagattacga cgttctaagg ttgaaaacga catttttttc
     9961 aaccttgaac ctagtgaggg gagtaggtag accgccatag cggctaccgt cctgtttcta
    10021 gatactttca gtatcagaaa cagctctcac atcaaaactg ctccgagaat cgtacatcgc
    10081 cttgatagaa tccacgaata tcgttgatac cgtagcgaag catggcaata cgttcctgac
    10141 caagaccgaa ggcaaagcca gagtacttgg ttgagtcaat gccactcatt tccaatactt
    10201 gcgggtggac catgccggca ccgaggattt caatccagcc tgttttctta catacattac
    10261 agccgtcacc accgcactta aagcaggaaa catccacctc aacagaaggc tcagtgaatg
    10321 ggaagtatga tggacgcagg cgaatctgac gctcttcacc aaacattttc ttgataatca
    10381 tttcaagcgt acccttgaga tcgcccatgg atacattttc accgacaacc aaaccttcga
    10441 tctggtggaa ctggtggctg tgagtcgcat catccgtatc acgacggaaa acacgtcctg
    10501 gcgaaatcat cttcaaggca cctttagaaa aatcatgttg gtccatggta cgtgcctgaa
    10561 caggcgacgt atgggtccgc ataagaattt cttctgtgat gtagaaggtg tcctgcatat
    10621 cacgcgctgg gtggtctttt ggcaaattca tgcgctcaaa gttgtagtag tctttttcca
    10681 cttcaaatcc gtcaacgatt tggaagccca tgcccaagaa aatatcttcg atttcctcag
    10741 aagtttgggt caagacatgg cgttttccga ccttaacctg acgacctggc aaggtcacat
    10801 caatggtttc ggaagctagt tgttgctgaa tttttgctgc tgcaaccttt tgagcagttt
    10861 cttcaaaggc agttgtcagc acatcacgca cttcattaac ctgtttacca acgattggtt
    10921 tcatgtcgtt agacaggtct ttcaagcctt tcaataagtc cgtcaaagac ccttttttac
    10981 ccaaaaccgc aacacgcagg tcttgtagtt ctttttctcc ttggtgctgg atttctttta
    11041 acttttctag tgtcgtttgg cttaattcag ccaactgttg ttcaatgttt gacataattc
    11101 ctccaataaa aaacgcatga caccactcgt atcggagcgt tgtcacgcgg taccatccgt
    11161 tttcatctgc aaggcagacc ttagttctat gaacctatat tcacaagtga agtgcttgca
    11221 cataagagat ggttttccgc taatcaaggc tgttttttga gggaatactg actgtatttt
    11281 gaaaaaaact aacgatgagt agctgaaaaa ctagccttag atggaagtgt tgaactgtga
    11341 atgcaggttc taagtccttg tgtgagtgaa ttcgaccaac tttcactgat tgagcttaca
    11401 gtcacggctc aactccctgg gcagtttcca taggtgtact agtctcacag actcctattc
    11461 aattaagaat attctatcaa aaagaagaaa gtttggcaag aaatcttcct agaaaactcc
    11521 ctctatctag gatagaaagg agtttagttt tatagttttg cctgccattt attggcccaa
    11581 acattctcat ttggaacacc atagaagtca tcttttcctt ctaatttatc aagtaaggat
    11641 tcgatagtat ttatattgtg atgataggca ttgatagcag ttttgaccat ggtaacatcg
    11701 tgaaggtgag ttgtatagtt tagtgaaacg aaaatggtcg gaacttcatg tacataccaa
    11761 ggaacttcat tggacatagc cgttttccac tggatgcggt aattattctg tgctccatat
    11821 ccaatgacat tggcaacagt caaggctaaa tcaacttctt ctcggtattg caaggttttt
    11881 cctttaatcc gagtcgtacc atcattgaca gtcacttcat aaccacgcgc ttccaaggca
    11941 gctttaaggt tatcaaccac ttctgtactt gccgccataa tcccttcttt ttccccttct
    12001 aggtaataca aacggattct gcgatgggtt tctggactga ttggaagatt tttttgtgta
    12061 tctttcaaca gcgtaattgc cttgtctgct gcctcacgtt gccaagccaa gtgttcttca
    12121 cagccgataa tagccaattc atcagctgat tttagtaagg ttccttccgc ttgcttgata
    12181 tgcagattga gtttggcttt cagacctaaa atgcgacgga gagcatcatg aaggcgttct
    12241 tcagtaatca ctcccttgcg gtagccattg agcataaatt caaaatcttc ttctaagtta
    12301 ttgaagaata agaacatatc gcaacccgca gcaatggctg caggtacgta gtcttcacga
    12361 cgcatggctg ctgtcatccc caacatgtgg ctggcatctg ttatgaccaa gccattgaat
    12421 tccagttttt ctttcaataa atcttgaatc aattcaggag ccagtgttgc aggcaaaatg
    12481 tcttcatcct tcaaagttgg attgagtcgt tgttggtaat atggcaaggc aatatgaccc
    12541 gccataatca tctcaacacc agcttcaata tgatgacgat agacacgacc aaaactcttg
    12601 tcccattctt ctggagagag ttcattgaca ccgaggacta ggtgctgatc acgttcttct
    12661 gtaccatctc ctgggaaatg cttgatacat tgaataacat ctctttcagc agtcaatcct
    12721 tttaaatagg cactggtata ggcaataaca tcatccgcat ttgtaccata ggctctggta
    12781 ttgacaatcg tattgcgcca gttctgaaca atgtccacgc aaggatcaaa gttgacattt
    12841 acacctaatg cagtctcctc gcgcgcagat acgagacctg ctaggtaggg aatacgagga
    12901 tcccgactgg cttctgattg agcacctgag gaaatatagg ttcctccttt cacagcccca
    12961 tctcctcctg agtcacagtt cgctgcaacc aagagaggta tttttgaata gctttgcaac
    13021 tcgttaatca gtccttgtac ctgttctgga ctgccattca tataacgagc accacctatg
    13081 tgatatcggt tcatcaattc ctgattactc agattatttc cactaaaggc atcccctccg
    13141 aagaagaata gattaacaaa caattgaccg attttttctt catcagtcag atgagccaag
    13201 gtatcttcta cccaggtaat ctgctcatca ttcaaacaat agggtttctt ccgcaaatca
    13261 accaatctag gcattctttc ctccttattt tccgcgccaa atctgtgtat ctaccaagcc
    13321 acaataggca tctacaggcg atactcctgt aaagtctgac tctcctgcta gtttagcaac
    13381 caaggcttct aatgtgacag gcaagccatc ataggcattg atataggtag caacctgtgg
    13441 catatctgca agtgcaaatg ggtgctgaac agagacaaca atggttggaa tttcgtgaac
    13501 atagaaaggc tggtctggcg ttcccttggc agctggccaa ataattcgct gagttgttcc
    13561 tcctgagttg acatcaacta aattgataat caaatcatag ttatctgtga tttcggcaat
    13621 tggacgcttg gaagcataga catttgcaat cgctgctggt ctttcttctt ctggtaattt
    13681 ggcaatccgt gcctccgtat tttcccagat agatacttgg tgacctcgag cttctaatag
    13741 ttctttcagc gtatcggctg ctctcttctt gccagcattg atcatggcgc caaaaccacc
    13801 cttatagcca tccacttcga ccaataaaat acgtttgtag cgttctggat ttacggggaa
    13861 aattccttct tgtttggctt ttaccaaggt aatcgccttg tcagctactt cttttgcaag
    13921 ctgtttcgcc tcatctctac caatcaaagc cagtgcttct tcttttggca tcatgatttc
    13981 ctgacgacga ccttcaaaca agtgaagacc gagtttagct ttcaagccca aggtacgacg
    14041 aagggcatca tgtagacgtt cctcagaaag cagaccattt tccaatcctt ctttcatcca
    14101 ttgcaaatct tcttctggat cattgaagaa aaggaaaaga tcacaccctg cctcaatagc
    14161 tgtaggcaat agctcacgac gcgacataga ggctgtcata ccgatcatgt gactggcatc
    14221 cgtgacaatg gcaccattgt aacctaattc tccacgaagc aattcatcca agagggtttt
    14281 attcagcgaa gctggcaaca tgtcatccaa ttcacgttct ggatgcattt ctttttcgac
    14341 atttggcaaa tgaatatgcc ccgccataat acctggaaga cctgcgtcag ccatctcacc
    14401 ataaatccgt ccaaatgttt ccatccattc agatttggtc atgggattcg aagcaaaaga
    14461 gagatgatgg tcacgttcat caataccatc gcctgggaaa tgcttagcaa acggcacaat
    14521 gccatgttcc ataatgcctc gcatgtattc tttggacaat tcaatgactt ggtctacatt
    14581 agctccccaa gttcggtttg caatgattgg attgcgccaa ttacggctga ggtccataat
    14641 cggtgcaaag gaggcattgc agcctactgc agctgcttca agtcctgcaa ctttccccat
    14701 ttcataagca tagcggggat cagctgtcgc agcaatcttg atttcatccc caattttcgt
    14761 tccgtccgta acagcgccat tcccaccaga ttcggtattg gctgcaatca aaaggggaat
    14821 cttagacttg gtctgcaaaa tatagttttg ctcccaaata tctgcagcag gtccaggatt
    14881 gtaacgaaca gcagcaatct tataatcatt taatactcca gtcagatatt cttctgtccg
    14941 ctggctcccc atgttgacaa agaggtgacc gattttttca tccaaggtca tctgagcaat
    15001 ggtttcttca atccaagaaa tagcctcttc atcaaggctg taaggtttct tccgtaaatc
    15061 tactaaatgt gtcatgtttg cctccaaaaa agctagaggg catcgcgcct ctagcccttc
    15121 tctactagtc gtctaaatta ttccaaaatg cctgtatcaa ttctgtttct ttctcacctg
    15181 tgaatgcttg atgagcaaat tcatctgcaa tcgtttctgt caaatccgcc caagattgca
    15241 tctcttgtcc tactaaaata ggatagaaat ggacaccgtt caattccgcc gccttcaaat
    15301 caccaggcga gtcaccaatc atcataatct tatcaggaca atacccttcc tctattaata
    15361 ttttaatgac atcttctttc ttgccacggt cttgacagta caattctgta acaaagtcca
    15421 gcaaaccttg gtctgtccac tcttcttcta ctgcttcctt attagcagaa gaaaccacgt
    15481 agacttttcc taactggctc aatttttcca agcccttgtg aacgccgatg aaggctaaaa
    15541 caggaccgct ataatgctta atggcttgat tgacttgagt ggaccattct aaagctaatt
    15601 ccaagtcctt tgatggcgtc tcctctatca atctttccag agaagcattt gacaaagaat
    15661 ctgtggtcgc gacccaattt ttcaagttat ctataccagt cacacctgca aagtctaggc
    15721 ctttaactaa gcctacaaaa cggttaatgc cacgttctcg agagtacaga ttgactcgat
    15781 tccattcagc taaaaacggt tctctatctt tgacatcaaa aacatctgca gccaaggggc
    15841 cgaaaaagag tttatgtttg taggtcatgg tgtccatggc gcagccatca gagtccacac
    15901 aaaatacgta atccgttttc atcatcaaac tcctgaatag gctgagaagc caccgtcaat
    15961 cggtaaaaca acaccgttga caaaacttgc caaattctca tctgccaaga agaagactcc
    16021 gccgactagc tcttccgctt caccaaaccg tcccattggt gtattggtca aaatcttgtt
    16081 ggcacgtgcg gtcggttgac ctgactcgtc aaatagcaag ccacggtttt ggttggtaac
    16141 caagaatcca ggcgcaatcg cattacaacg gatgccaact tttgaaaaat ggactgccaa
    16201 ccattgggta aaattactaa tagcagcctt ggcacctgaa taggctggaa tttttgtcaa
    16261 aggagtaaag gcattcatgc tggaaatatt gataatattt gctcccgagc gaccaatcat
    16321 atcctgtgca aagacctgtg ttggcaataa ggttcccaaa tagttcaaat tgaatacaaa
    16381 gttgatacct gcctcatcca agtcgaagaa agttttggta tcagctggta gtccaatctc
    16441 atggaattca ttgtccgttg tcgcttttgg attattgcct ccagcaccat tgattaaaat
    16501 atctacagga ccaaaatctg ctaggacttg ctggcggact ccttccaaat tttccttaga
    16561 aagaacgttt gatttatagg cttttgctac gcctcctgct gctgcaatct catcaacgaa
    16621 gacctgagcc gcagcttcat ttaagtccaa aagcgcaacc tttgcacctg ccttagcgaa
    16681 ttcttttgcc aaatagccac aaagaacgcc acctgctcct gtaataacaa caaccttgtc
    16741 cttaaattca ataacacgtg tcatactagc tctccttatt tccgactgtt ttgactgtaa
    16801 ttccaaaatc tggtgtcttg cctgctgctc gcatattggc ttcatagaga ccgttaaagt
    16861 aggttgcccc aagggctcgg tcatacagac cataaccagg tgtcttggtc tggtctcccc
    16921 agatacgacg accgtggtct ggacgcaagg caccagtcca gtcataatct accaataatt
    16981 taacaacagc gttcatgtca atgtcaccag cctgtgacag atgtgctgtt tcttggaagc
    17041 cccaagcccc tgctgtcaca ttgcgcgtat gcataaaatt gatacgattg cgtttgagag
    17101 catattccgt catggcaagg tcatcatttt tcggatcaga agcataggat ccgacacaca
    17161 tggtaattcc attgtgctct gaatcataga gattcaaaaa tcgttcaacg gcttcttgac
    17221 cagtaataat acggggcaat ccgaaaattc catacggagg gtcatcagga tgaatggcca
    17281 ttttgacgcc agcttcctca gccgttggta gaatcgcttt gataaaatac tccaagttcg
    17341 cccataaatc ttcttcagag atattctgac gataattttc aataatcgcc ttcatttctt
    17401 ccttggaata ggacgaatcc caacctggta agttcaaatc atccgccaca ggatcaacac
    17461 ctgctaaatc agatttaagg aaagctaaag aagttgaacc atctggaagt gggtggtgca
    17521 agtctgaacg ggtccagtca aacacaggca tgaaattgta gcatacaact ggaatacctg
    17581 cagcccctac attacggatt gaagttttat agttttcaat taactcatca cgatttggct
    17641 tcccttgttt gatgtcttca tgaacaggaa tggattcaat aaccgtaatt tcaagtcctg
    17701 cctcttcgac catttttttc agctctagaa tgttttcaag gggccaagct tgaccaactg
    17761 gcacatcata gacagctgtt acgattccct gcataccagg aattgcctta atctcttcca
    17821 gtgtcacagg atcctttttc ccataccagc gaaatgacat tttcatgatt tactctcctt
    17881 ctattgttca aaaaactctt ttgcattgta ataggatatg gcttctacaa attgccctaa
    17941 acgattgtaa tcttctggca cttcctcatc aactatccat tgaccaacat aggtcgctaa
    18001 aatgcgtctg aaataatcat gccgttgata agataaaaag ctacgcgaat ctgtcaacat
    18061 accaacaaaa ttagcaagca taccctgttc tgcataggca ttcatctggt caatcatgcc
    18121 caacttggtg tcattgaacc accaaccagc accaaattgt aactgactac gaagcccttc
    18181 ctcattggac tggaaattcg ccaaagtatt ggccagagca atgttgtaac ttggattgag
    18241 attgtaccaa atcatttttg gaagggcatt ttccttgacc aagttatcta acaaacgatt
    18301 caaattcaca gtcagacatg tctggtctcc aatcgaatcc acacctacat ctgctccaag
    18361 tttttcaaac agtcctgtat ggttgttccg taaggcacca aagtgaactt gtgtcacaaa
    18421 gccatgtttc ttgtacaatc ggcacaattc tctaaagata gcagtctgcc atttattgat
    18481 actggattgg ccagcctctt tacctgcaag tcttgctagt aaaatttcat ccaactcttc
    18541 gagggtagcc tcttcatagg aaatagccgt aaaactgatg tcacttgctc ggcaaccgtg
    18601 ttgagcaaaa taggaaacgc gctgaccaag tgcctctaca aaacttgcaa agtctcttac
    18661 cgctacccct gttacttcct ccaagcgttt cataaataga ttgaaatttc gatgctcgat
    18721 aaaggcttca tctgggcgga aagtcggtgc cactacagta tctatggtcg agtcctcagc
    18781 caagcgctta tgccattcca agctatctag tggatggtca gttgtcccaa taaaggtcac
    18841 cctagcatcc gcaatcagct tacgtggact aactcgatgt tcttgcaaat aagcattgag
    18901 ctgatgatag agtcgctctg cattttcttc ggtcaacaat tcctcaacac cgaaaacctg
    18961 tcgcaattcc aagtgactcc aatgatagag aggatttccg aaagcccgtt ccaaggttct
    19021 tgcccaggct ttaaacttat ctagtttact tgctgaacct gtgatttctt cttctgagat
    19081 accattagcc cgcatcaagc gccacttata atggtcaccc cccagccaca gatcaacaat
    19141 atcttcataa accttatctt caaaaatttc cttaggatcc aagtgacaat ggaaatcata
    19201 gataggaagc tctgctattt tcccgtaaag ctccttagca ggctcgtttt ttagcataaa
    19261 gtttttgtca ttaaaactca tttcatccct ccaaagctgc aacaaaactg cgagcaatcg
    19321 tcgttacact ttcatagcct tcagcctgca ctcgacttgc cagagccgaa ccgactccaa
    19381 cagcacaagc acctgccttt ttccaatctg caacattttc aactgatacg ccaccagaag
    19441 gcatcaaatc tacttggggc actggtccgt gaatatcctt gataaatcca ggccccaaga
    19501 caccaccagg gaaaagtttg ataatgggac atcccgcctg actagctgtg acaatctctg
    19561 ttgcagttgc acagcctggg aagtagaata cctcagcctc ttgcgccaag tcttgaattt
    19621 ctttatcaaa atgaggacta accaggaaac tagcacctgc atcaatggcc gcttgtgcca
    19681 gcttaagatt catcactgtt cccgccccga tgactacgga agaatcgtat gagaactcct
    19741 cttgtaattc tttgataact gtcgctgcat ttggagtcga aaatgtaatt tcaatatttc
    19801 gaatacctcc caaaatcgca tggcgagcga tttctttcgc atcttcttca tcttttccgc
    19861 gaatcactgc aaaaaagtaa ttttctttta attgctttaa catcttgacc tccaattaga
    19921 aagcgttgtc attcatagct atagtataca actcatcaga tgatttgtca ataaaaaagc
    19981 aaaaaatacc cagaagaatt cttctgggct gtctattttt tatttctatt tatgatcgtt
    20041 gagaccatgc aaggtcatat ctttatcgaa ccattcgctt aaaacaacct gtcttactga
    20101 tataatatgt gctaacatgc tatcatatgc tgcaacagga tggcgttgct tgatagccat
    20161 taagatgttc ctgtgggcct gtaaactatc cgatttcatc tgacgatttg aataattttc
    20221 attgatcaga tgaatagatt gattaatgac gggcatcaga cttgtcatag ccagattccc
    20281 actcatctca gccagcatac agtggaattt cacatccaac tccaaatgct tcgtgtctcc
    20341 agcagcaacg gcctcttcaa tagcaaggac aatttcttct agtcgagcaa tgtcttcgtc
    20401 cgaggcaaac tgagcgacac gctccgcaat tctcggttca agcaaatacc gcacttcaaa
    20461 caaatctgtc gtcaacttca cacggtctct taccaaagaa aaacctaggg gatcctctga
    20521 tactcctttt ttagagctga tataggttcc cgacccttgg cgcacctcca gaatatttcg
    20581 agtagccaaa cttcgaacag cttcacgaac agtcgaacgt ccaacttcta aatcttgggc
    20641 caattcatac tcatttggaa gcttatcacc aacttcatat cctctttcca aaatcaattc
    20701 caataagcgt tccgatgctt tttctaccaa gggtttcgcc atgtgcttgg tcctccaata
    20761 caactttcta tttgctacta ttatagctca tttcctctta taatggtagt ttggaatggc
    20821 agtccaacgt ttcttgattt ctcttacaat ttgcttgggt tgtctatttc ttgagaataa
    20881 tcctttgtga tttccttgaa tgcgaatgat accaaccgtg gtttcaaaat cagcaaaatt
    20941 ccagacttgt tcacccacta aattaggaat agaatcaaag acgcgatggt tcatatcata
    21001 gtaatccacc tgaaattcct ctgtataagg aatatcccac atcgaatgca aaccttgaag
    21061 agtatctgca ccatattccg taatcaaaat tggcttgtca ggataaagtt tttgccaagt
    21121 ctccaactct tgacggagcc ctttctctgc cgccttcaag tcaccatgag caacatacca
    21181 accatagtaa cgattgagac agacaacatc gaccaaatcc ataacctcat ccttatcagg
    21241 cgttgctgtc ataatattga ccaaggtcac aggacgctta gacggatctc tgtccctcat
    21301 gcgctgaatc agaggttcaa agtaagcacg cgcgcctttt tcatgccctg ctggctcatt
    21361 ggcgacaacc cacatcacta cggatggatg atttttgtca cgtgctatca attcatcaat
    21421 caccaattca tgagcatcct tggtttgcat aacttcccag gtgcttttta cctcttcaga
    21481 atcccctgtc aaattcaagg ctgcattgaa aagctggaat aggccaactg ctggcacttc
    21541 atcaaggacg acaattccca aacgatctgc cagccgcatc atttcctcag aatagggata
    21601 atgggaggtc ctaaaggaat ttgctccaat atctttaagc aaattcaaat ccatcagatt
    21661 ggctgcttca ttgaaaccac gcccattgat gaaggtatct tcatgtttac caaatccctt
    21721 gaaatagaaa ggttttccat tgatgaaaaa ctgcccattt tcaactgcaa cactacgaat
    21781 gccgaattgt tctgagtagg tatctagcaa gttttctcca tcaaataatt caactttagc
    21841 agtatagaga taggcatcca agacctccca aaggcgtgga tgttcaatga ccatttgtcc
    21901 attttcaaga agacctactt cctgtccctc ttgatctaaa atagacatac ggatggaatc
    21961 gtactgccca actgtcttca catcaacatt cactaccgcc tgagtcaaat cttgatttag
    22021 ctccgtccga ataacaatat cctcaatcct attttgggga cgtttataga gatgaactgt
    22081 ccgctggata ccagcatagt tgaaaaagtc aaaattttcc ttgacggtct tcacaatttg
    22141 accattctca tccacttctt cgctataatt ccctactggg agggttgtgt aattcaactc
    22201 attattagca caaaccgtca aacggaattg atcagcgtcg tataagtttg acggaatcaa
    22261 gcattcaaaa ggtgtgaaac cacccttgtg ctccccgatt aactgaccat ctgcatagac
    22321 tttggcctga tgtgtcaccg aaccaaagcg cacaaccaac tcttcatcag ctgatacgac
    22381 agggagagct accataagtt cataccaatt atctccgaca aaacgacgtt tgtccttatc
    22441 aacaacaaga tcattaaaag aactcggtac aaccattact tcatctgtat ctaacagagt
    22501 atgaacatca ttgttccctt gcttaaattt ccatattcca tttaaagaat aaactgagcg
    22561 tgtttttgtc tgtattggat acaacatact ttttccttct ttctatcgtt ttatttcacg
    22621 tgaccctttt ttcaatagca aatcaatatc tgattgactg atgacattaa tgtccccttc
    22681 aatggtatgt ttgaattgaa aactagccat acctaagtcg agtatttccc gtggagattt
    22741 ttcctgcaaa tagcccaaaa taattcctgc tgtaaaggca tcccctgtcc caactcggtc
    22801 cagaacttga atggattctt tttccgtttc ataaagaata ccatcttgat acaaatatgc
    22861 tttcagcaaa tattcattat tgtaggtcat ttccctctgg gtaaaagcaa gaccctgcaa
    22921 agaataagtc tccgccagac ctttaaccac cgctaacaag acttctttat tttcataagg
    22981 gcgcttcaac cccaattcat ccttcagatc ttttccagat tcattgaaga gttgaatagg
    23041 ctctagacca aagcaaatat ctgctaaacc tacaaaagga gataatttct ccctcgcttc
    23101 ttcaaaagaa gaccacaaac tttctcgata attcaagtca aaggaaacct taacaccctg
    23161 accctttgcc atttccatca aacgaaaagc cagtcgataa atatctggat tcaaagcgac
    23221 cgttatacca ctgacatgaa accaatcgac accgtcaaac atgccttcca aatcataatc
    23281 ttcttccttg gataagctga aagcagaata atcacggtcg taggtcacct gactgggcct
    23341 gagcgaaaaa cctttttgat agtaataaag tccaagcctt ccctcgtttc gaatcacata
    23401 tttctgtcca atctgccgtg caaagagaaa gtgttctgcc atttttccca cttcattctt
    23461 aggcagtgcc gtcaccaact caactgaatg ccccagctga gccaagctgg ctaaaacatt
    23521 caactccgaa ccaccaaact gacaatctaa actggtagcc tgtgtcaaag tttgatactg
    23581 cggaggagat agccgcaata aaacttctcc aaatgctaag atttttttca taccgcctcc
    23641 tagatgaaag acccagctgg actcctccaa ctaggtcgtt attgtattat ttatcgtcgt
    23701 attgatcaac cttatattga gttacatcaa cataatccat atcagataat ggaacatttt
    23761 tcgcgattgc acgcacacgt tcctcatctt ttgccgcttt cataacatgg attttctctt
    23821 gaatacgtgc catttcttca cggtctagtt tgtagaattt catcaagaac aaggatacgc
    23881 tcaataccgc ggctggaatc actgtcaata ggacaatcag tgccattctc aaatctgtag
    23941 agaatgccgt ttcaacggtt gggtactctt taccaaaacc gatacctgct aatacaaatc
    24001 caacaaccat tggggcaaat gaagaagcaa ttgagtctgt caatgagaag atagtcccaa
    24061 tcatacctga caagtaacga ccagatactg aagtttcata gtctgtaata tccgcaccca
    24121 tggtcaatac caaaccagat ggagcactag atgcgtagcg agcaacgata taaacaacaa
    24181 agaagccgat tgtgtagaga ttccaatttg tcaaatccaa catacctggt ttagctgaaa
    24241 agagcatcgc tgccaagatc acaagaccag caatcccaag ttgaagcgct gtaatatagg
    24301 caaaacgtaa acctttacga cgagccaatt gcgcagcacc aactgttaca agaatacctg
    24361 gcaaaatcaa aagcatagac atttttccag aaagagcata gtcaccgaag ataataccat
    24421 acagcataac cccgataacg gaatctccaa acagttgagc aacaaatttt acaaaagctg
    24481 cagagattga aagaacctgc aaaggtttgt ttcctttgat aactttccag tagtctttca
    24541 acttagtttc ttgtgtcttc tcaccaagac caaagtattt cttattgtct ttctcccaaa
    24601 taccgataat agcaagaata cccagaacag ctgaaattac tactacaccg aggaacaatt
    24661 cctggaagaa acttggagtg aaaccaccat gtttcggaac caatgtccct gacacaacaa
    24721 cctgactacc agtcatcaac acagttgtcg caataccatc aacaatatta aagattggac
    24781 gttgctttgg atcattggta agcgcaactt gtcctgcttt tgtaatcgtc tgttgaagtg
    24841 aatatccaat tttatggata atcaaaacaa ggatgaatag aggaagacgg agactctcat
    24901 taactccact taaacctaac atcataaaaa gagaagctgc tgtaatgata ttccccaaaa
    24961 ccaagatagg acgatattta ccaaacttag tatccgtttt atcaatgata actccgattg
    25021 taggatcaat gaaaccatca aagatacgaa tatagcccat gagttgacta acaaacaggg
    25081 ctgcaagacc aagcacacct gtcgataaat aagtcacgaa agtaaaagca accaagtaaa
    25141 tattcgtcga tgaattgttc atcgcaaata atatgatttg ccataacttg gctttgttat
    25201 aagtaacgtc ttcgacacgt tgctcaacat gtttttccat tggaaattcc tcctaaatgt
    25261 tttctacgac aaagtcgtaa gcgttttctt taactatatt ctaatattca tcagatgatt
    25321 tgtcaactgt ttttgtaaat atttttaatt atacgcaaaa aaagacgatt tcacgtgaaa
    25381 atcgtctgat atatttgatt tagcgaggaa gaattcatct gactatttat tgatttactg
    25441 caatttcccc actatgatag ttgatactga gaccactctg cacatttgga acgaacacat
    25501 tgaactctag gctaccatct gctgcttttg cctctagatg gcttccgaca ggaacaaggt
    25561 cttcactctc agcatacacc aaggtcacac gatagcggat acgcttattt ttatccaagg
    25621 cccgccgaat ctgactttca aaataattct gcccagttga agtttggtcg ttagcttggt
    25681 tggaccaagc tgtttgaact gcaatattct taggattgct ggttgaagca tcgaagccag
    25741 acaatccacc aatcaaagca taacctagga ggtgaccacg gtccactgca tggtcatatt
    25801 ctccagttaa atcatggatc tgatgccaac ccgcaggtgt ccaagaagtt cgaccatttc
    25861 ctgtttcttc acgatcctta tactgacgtg tagatttagc taaaagcgca ttggctactg
    25921 ttggaaccgt ttctccctgg actgtctttg tcttattatc accataaggt acactggcaa
    25981 ccgatgcatc taaatctgtt tgattaccgt taataataaa tgctccagcg ccattccatt
    26041 caatcgaatt ccccagttgc ttttttacat cttctgtcaa taccgaacta gccagttcct
    26101 gactaggtgt gccttcactt gccttagact gattgacata ataggaataa tcagcaacgt
    26161 tactgctctt gttatcactt aaaagatagc cacccgctac gacaacaatc gtagccaata
    26221 agctgagcag actcattgct tgttttctta catttttctt cgccattttc tctccatcaa
    26281 aaaagcaggt ccagcctact ttcctgtaaa tttaccgatt agttcttgcc acttagctgg
    26341 tgacaacacc gcaaatacat tgtctccatc tcctatgaca ccgtaaccaa ccattaatcc
    26401 taaaacaaac accaaaatag caatcaacaa aacaactgct actaagatta aatttttacc
    26461 aacatagcta agattatcct tatccatttt catcttctcc actcacacgt tcaatcgttg
    26521 cacctaaagc agctaatttc tcatgaaaac gatagtaacc tcgatctaag tgcgttaatt
    26581 tacctacaat cgtttcacct tcagcaacca aaccagccag aatcaaagcg gcacttgctc
    26641 gtaaatcagt agacataacc tgagcacctt gcagagcaag tcctcccgtg atgatagctg
    26701 tatctcgtaa aatttccgaa tgcaaatcca tccgacgcat ttcttccaaa tgctggaaac
    26761 gattttcaaa taccgtttca atcatggtag attcaccctt tgcaactgcc attagagctg
    26821 taaattgagc ctgcatatcc gttgggaatc ctggatgggg caaggttttt actgttacag
    26881 gtttaagctt atccacttgc gaacgaactc gaatcccttc agcttcttcc gtcacctcaa
    26941 ctcccatttc caacatctta gaaatgagtg gacggttatg ctcccagaca gcgtccttga
    27001 ccaagacatc tccaccagtc attgccgctg ccaccataaa ggtacccgct tcgatacgat
    27061 cttgcaccac ttgatgttct gcgccagtca attcttctac accagtaatc gtaatcgtct
    27121 ctgtacctgc ccccttaact tttgccccca ttttgtttag gaaaatagcc aagtcaacaa
    27181 tttcaggttc tcgcgctgca ttttctaata ccgttgtacc ctgcgccaga gttgcagcca
    27241 tcatcaaatt ttgcgttgcc ccaacacttg ggaaatcaag atagatatga gctccctgca
    27301 agttctctgc actcgcttca atataaccag ctcgttgttt aattttagcc cccatagctt
    27361 gcaaaccttt taagtacaaa tcaattggac ggctaccaat tgtacaacct cctggcatag
    27421 aaaccttagc ataaccattg cgtgccaaaa tcggaccaag aataacaata gaggcgcgca
    27481 tttgactcac atacttataa ggagtttcgc taccaagttt acctgttgcg tcaatatcga
    27541 tagtctttgt ttcctcgtca aatttcacac gaactcccag accacgtaca acattattca
    27601 ttgtatagac atcagacaaa ataggaacct gagtcaattt ggtttgccct tgacttgcta
    27661 gaactgttgc tgccaataaa ggcagaacgg cattcttcgc cccctcaatc tcaacctgtc
    27721 ccttcaaacc gtttttacta cctgtaacaa taattgtatc catttcttat ccttttctta
    27781 tcttaaatca catatttgca aaagagcgtc ccaccatcaa caattctaaa aagaaagtcg
    27841 agactaagta ccccagtgct attgccagaa agagaatcag caaattgatt ttacgctgat
    27901 tatcccccgt caccttcaac caccgtgacc aatcaactgt tgtaaccaag agatgatgag
    27961 ccagatagat aaacaatata tgactaaaaa actgtaaaat tgaaattacc atgtttccat
    28021 tataccatga aattaaaa
//
LOCUS       DASGBY010000011        26991 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.011, whole genome shotgun sequence.
ACCESSION   DASGBY010000011 DASGBY010000000
VERSION     DASGBY010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26991
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.011"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(48..953)
                     /locus_tag="U1396_000377"
     CDS             complement(48..953)
                     /locus_tag="U1396_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5341596.1"
                     /translation="MRIQQLYYIIKIAETGSMNEAAKQLFITQPSLSNAVRDLEKEMK
                     IKIFFRNSKGITLTKDGMEFLSYARQIVEQTELLEDRYKNPNAKRQLFSVSSQHYAFV
                     VNAFVSLLKETEMEDYELFLRETRTWEIIDDVKNFRSEIGVLFLNHFNRDVLLKLLDD
                     NRLSYTTLFTAKPHVFVSKTNPLAQRKSITLDDLVDFPYLSYEQGIHNSFYFAEEILA
                     QEHHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLEFDDEIELVYI
                     QHEKALLSDMGEKFINYLLEEVKFD"
     gene            1050..1940
                     /locus_tag="U1396_000378"
     CDS             1050..1940
                     /locus_tag="U1396_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEM5341597.1"
                     /translation="MINRANTAFFSCNLASQQGFFSISTFLFSVSLLYRIGEKMILKE
                     QMLLVDQVQLAPRIFAMTLQGNMVQDMKMGQFIHIRVPDDSMLLRRPISISEIDRNKS
                     QCRIIYRVEGQGTEVFSKMTVGQYLDVMGPLGKGFEVDFLKEGDRILIIGGGIGVPPL
                     VEVAKQAANRGAKVTSVIGFATKEAVILEEELASYGVVYVTTDDGSYGRKGNVATVVE
                     ELTNEFAAIYSCGAPAMMNYVDQRFQEHPHAYISLEARMACGMGACYACVVKPKQGQE
                     HENKRVCKEGPVFATGSLIL"
     gene            1950..2891
                     /locus_tag="U1396_000379"
     CDS             1950..2891
                     /locus_tag="U1396_000379"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEM5341598.1"
                     /translation="MTKRLAISLPGLDLKNPIIPASGCFGFGQEYADYYDLNQLGSIM
                     IKATTRHPRYGNATPRVAETPAGMLNAIGLQNPGVDVVLSEKLPWLEQHFPDLPIIAN
                     VAGFSNEEYAYVSGKISKAPNVKAIELNISCPNVDHGNNGLLIGQVPELAYQAVKAAV
                     EASSVPVYVKLTPSVADITLLAKAAEAAGATGLTMINTLVGMRFNLKTRQPILANGTG
                     GMSGPAVFPVALKLIRQVAQMTDLPIIGMGGVDTADKAIEMMVAGASAIGVGTANFTD
                     PFACPKIIQDLPKRMEVYGIDSLEGLRREIRHRLGKR"
     gene            3056..3751
                     /gene="pyrF"
                     /locus_tag="U1396_000380"
     CDS             3056..3751
                     /gene="pyrF"
                     /locus_tag="U1396_000380"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEM5341599.1"
                     /translation="MKETRPIIALDFAGKEEVQSFLEQFPPDEKLYVKVGMELYYAEG
                     PGIINYLKGCGHSIFLDLKLHDIPNTVESAMKVLAKLGVDMTNVHAAGGVEMMRAARR
                     VLGKDAVLIAVTQLTSTSEEQMRTDQNIQTSLQEAVVHYAQRAQEAGLDGVVCSAHEV
                     ALIKDATSSDFVCLTPGIRPTGGEVGDQKRVMTPADAARIGSDYIVVGRPITKSEHPY
                     QTYLSIKEEWNRG"
     gene            3744..4070
                     /locus_tag="U1396_000381"
     CDS             3744..4070
                     /locus_tag="U1396_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEM5341600.1"
                     /translation="MDKIYQIIIDRPIGYIDKFGNQYPINYGYVPNLLAGDGEEQDVY
                     IISKAVRQPLTAFEGKLVAIIHRRDDVEDKWVLTGLDEKLTVTEIKEKTNFIEQYFDS
                     WIEMVD"
     gene            4207..4839
                     /locus_tag="U1396_000382"
     CDS             4207..4839
                     /locus_tag="U1396_000382"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEM5341601.1"
                     /translation="MTLATEIASHLLDIKAVHLRPEKPFTWASGIKSPIYTDNRITLS
                     YPETRNLIEDGFVQRIEEEFPEVEVIAGTATAGIPHGAIIADRMNLPFAYIRSKPKDH
                     GAGNQLEGRIVKGQKMVVVEDLISTGGSVLDAVAAAEREGADVIGVVAIFTYELPKAD
                     CNFDNAGVKLVTLSNYSELIKVAKVQGYINADGLNLLKKFRQNQETWQED"
     gene            4948..5874
                     /locus_tag="U1396_000383"
     CDS             4948..5874
                     /locus_tag="U1396_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5341602.1"
                     /translation="MISVIVPCFNEEEAIPYFYDAMEKVRKEMGEQFEYIFVNDGSKD
                     RTLTVLRQLSGQDRAVRYLSFSRNFGKEAALYAGLQAAQGELVTVMDVDLQDPPEMLM
                     EMKAMLDGNPDLDCVGTRRVSRDGEPPIRSFFAKLFYKLMNKISQVEVVDGARDFRLM
                     RRHMVDAILSVSEYNRFSKGIFAWVGFETEYLPYENVERVAGETSWSFWKLLSYSIEG
                     IINFSDTPLNIASYTGFFTFLLSLVLMVFVVFKTLVFGDPTIGWPSTICIILFLGGLQ
                     LMTIGILGKYLAKVFLETKKRPIYIVKEKSSN"
     gene            5884..6537
                     /locus_tag="U1396_000384"
     CDS             5884..6537
                     /locus_tag="U1396_000384"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001841111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM5341603.1"
                     /translation="MEHSAWHELIKAQLPEHYFGKINQFLDYVYAGGTVYPPREKVFA
                     AIQTTDLEEVKVVILGQDPYHGPGQAQGLSFSVPNSVPAPPSLQNILKELTDDIGVKQ
                     DHDLTAWAEQGVLLLNACLTVPAGQANGHAGQIWEPFTDAVIKVVNSLDQPVVYILWG
                     AYARKKKALITNPKHLVIESAHPSPLSAYRGFFGGKPFSQANAYLTSQGRTGIDWLR"
     gene            6577..7848
                     /locus_tag="U1396_000385"
     CDS             6577..7848
                     /locus_tag="U1396_000385"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEM5341604.1"
                     /translation="MLLVKNGRVLDPQSGLDKVCDILMDGSEIVKIAESISEDVEQEV
                     IDATGLVVAPGLVDVHVHFREPGQTHKEDIHTGALSAAAGGFTSVVMMANTNPTISNV
                     ETLKEVLDSAKKEAIHIYSVATITDHFDGQNLTDFPALLEAGAVAFSDDGIPLTNAGV
                     VRKAMKLAKEQGCLISLHEEDPDLNGVLGLNEQVAEKHFHVCGATGVAEYSMVARDVM
                     IAYETGARVHIQHLSKAESVKVVEFVQGLGANVTAEVAPQHFSRTEDLLLIKGANAKM
                     NPPLRLESDRLAVIDGLKSGVISVIATDHAPHHADEKNVEDLTQAPSGMTGLETSLSL
                     GLTHLVEDGHLTLLQLLEKMTINPAKLYGLDAGYLAENGPADLVIFDPNANRLVTADF
                     ASKSANSPFVGDSLKGQVLYTIANGQIVFGK"
     gene            7979..10093
                     /locus_tag="U1396_000386"
     CDS             7979..10093
                     /locus_tag="U1396_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM5341605.1"
                     /translation="MKKKKILLPVMSTLLLAPFVLAQQVQAAETTTAATTTNQPATTD
                     ATATVPATSVENVATEETVVPAAEETVEAVIIHTNDVHGRILEEKNVIGDAKAAAVIE
                     EERAKVENTIVVDAGDAFQGLPISNSTKGEDRANIMNQVGYDAMAVGNHEFDFGMDQA
                     IKYKETLNFPLLSANTYVNGARVFEASTIVDKTPTVVGDEFVVIGVTTPETATKTHPK
                     NVEGVTFTDPVTEVNKVIDEVEARALADNRVYKNYIILAHLGVDSTTPVEWRGSTLAE
                     ALSKNSKLAGKRVIVIDGHSHTVEATTYGDNVTYNQTGSYLNNIGKVTLKSDKLLGEA
                     SLISAADTKNVTPNAKIAALVDEIKAKYEAENAQVVIENNPVELNGDRSNVRVRETNL
                     GNAVTDAIYAYGQTGFSNKTSLAVTNGGGLRATIAKDQPVTKGDIIAVLPFGNIVSQI
                     TVTGQQIYDMFTKSLSSTLQVNPETGEMLLDENGMPLFEASGGFLHISGANVFYDPTL
                     PVEERVLLIGILNPETGEYDALDLEKTYYLATNDFLAAGGDGYTMLGGAREEGPSMDS
                     VFAEYLKTADLSAYEVVNPYSRIIPVNSSIDTDEDGYPDFIEILLDTDPENPASNPET
                     VPAENTDSPSNQVQNTSATDKKAPVDSPKVGDKKTEVASPVKTTKAGVLPNTGDQMNL
                     TLSLFGLGLAGLAMAVGRRKEN"
     gene            10145..10792
                     /locus_tag="U1396_000387"
     CDS             10145..10792
                     /locus_tag="U1396_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEM5341606.1"
                     /translation="MQTVFQYQKEGDREQISSYVLLSNSPRRKQLLGFLQPQIASVEV
                     DERGIEEHFMKQFATDDFLTRAAKTCCEISKAKSDMDLVTGHLYISADTIVVSDGQIF
                     NKPQDLTEAEIMLRSYFGKSHHVVTSVCLRTRHSLDVFYTVAQIDFVDYYPALEEVIQ
                     SYIREKQPLDKAGAYGIQELDPRFVSGISGDIHTIIGLPVAEVSRRIFSEEGFEK"
     gene            10844..11332
                     /locus_tag="U1396_000388"
     CDS             10844..11332
                     /locus_tag="U1396_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEM5341607.1"
                     /translation="MTVDIERYKQLAQQKQGEHRKFLANLKKKAPKNLDRIVQDIHAE
                     VFSEIDCTECANCCKTLGPLFTEADITRIAKHLRMKLPVFEDMYLRVDEDGDKVFQSM
                     PCPFLGGDNLCSIYDARPKACREFPHTDRKKIYQINNLTIKNTLICPAAYLFVEKLRE
                     RI"
     gene            11432..12283
                     /gene="ylqF"
                     /locus_tag="U1396_000389"
     CDS             11432..12283
                     /gene="ylqF"
                     /locus_tag="U1396_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEM5341608.1"
                     /translation="MATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPM
                     LTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAK
                     SLMKDKIERLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQ
                     WLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGLDYFKANY
                     PERLQERFKGMDLEQETPELIMDWTKKLGFRDDYDRFYNLFVKDVRDGRLGTYTLDRV
                     SDLDGND"
     gene            12270..13049
                     /locus_tag="U1396_000390"
     CDS             12270..13049
                     /locus_tag="U1396_000390"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEM5341609.1"
                     /translation="MATIKEVTTLLAQVDSLDSPVWAELSQDERAGVQAAIKKRRKEL
                     DKEVAEDARLEAMLFYEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRY
                     LNDSKKIPKSKHEAIYQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQ
                     KPDHLLIDAMKLDTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGF
                     AKNAGYGTAEHLEGLNKLGITPIHRKTFEPIKSMVTGGKSS"
     gene            13046..14056
                     /locus_tag="U1396_000391"
     CDS             13046..14056
                     /locus_tag="U1396_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM5341610.1"
                     /translation="MTVFFWIFLASIGLFGLLYFWERRSIFISLFALNILVWALAWII
                     STGILENNEILRLLAIAVAMVLFLAFLSGPFVLLFTLYLNGFQILEREGVRFHNFLSM
                     GLAVALTFYLFIAPFVVQSLSGISLLNMVFVYVGFLVSYAIIISMLYTTSSFVNFVNL
                     FPGKLDYVVVLGAGLIGDKVTPLLASRIDKGIAIYQKQPGSKLIMSGGQGPDELIAEG
                     QAMANYALEQGIPAEDIIIENQSTNTEENLKFSYALMKPGSRFALVTNYYHVFRALLL
                     ARQLKIKCIGYGAKTKFYFSLNAFIREFVGYVVMSRKTHLVFLSIVSALYLIGVIISL
                     MH"
     gene            complement(14089..14739)
                     /locus_tag="U1396_000392"
     CDS             complement(14089..14739)
                     /locus_tag="U1396_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEM5341611.1"
                     /translation="MNPSLKLSLQLSFGEEVANSVTHAVGALLMLVLLPVTAIHSYQD
                     YNLTAVIGMSIFVISLFLMFLSSSIYHSMPYASTHKYILRIIDHSMIYIAIAGSYTPV
                     ALSLVGGWLGYLIVGLQWGLTIFGILYKIFAKKINEKFSLFLYLFMGWLVVFILPAIL
                     QKTGMAFGILMLAGGLSYTIGALFYAKKKPYFHMIWHLFILLASALQYIAIVYFML"
     gene            complement(14729..15280)
                     /locus_tag="U1396_000393"
     CDS             complement(14729..15280)
                     /locus_tag="U1396_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1836 domain-containing protein"
                     /protein_id="HEM5341612.1"
                     /translation="MKQTIPYWHELPNLDLYLDQVLLYVNQVVNSQESLEQKSLYSMK
                     INSSLGNETDDRTGVHQGKLTTDNVDFRRVLTAAMINNYVKHKQIEKPVKKKYQKQQV
                     ARLIALTILKNVFSIQEISQTLHLLLQSSHSETLYNHFVDCMRNEENEETPDIIRYAC
                     QSVKLYYKTRQLTMELERSHHES"
     gene            complement(15388..16722)
                     /locus_tag="U1396_000394"
     CDS             complement(15388..16722)
                     /locus_tag="U1396_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM5341613.1"
                     /translation="MKIIIVGGVAGGMSAATRLRRLMEDAEIIVFEKGPYVSFANCGL
                     PYYISGEIAEHDSLLLQTPESLKQRFNLDVRPFHEVISIDAEQQTVTVKTPTGELIES
                     YDKLILSPGAKPVIPNLSGIEEANNLFTLRNVPDLDKIMIKLDQIKSGHVVVIGAGFI
                     GLEMAENLALKGWKVTLVEQAPHVLPTFDLEMARYVEAELTNKGIEVITGQSVTAFHE
                     KGQVLELSNGQTLSSDVTILSVGVAPDSQLAKKTGIELGLRGGILVDKNYQTSQNNIY
                     AVGDAIVVKQEITGQDALISLASPANRQGRQVADVIAGLDRKNKGSIGTAIVKVFDLA
                     AASTGLSERTVQSLGYEHAIIHTTGKDHAGYYPGEVANGQFREFIHIPLDQLRERVGE
                     LDASKEYIVICHSGLRSYIAERILKEKGFGVKNLDGAFSLYKMALPENIIQP"
     gene            complement(16719..17042)
                     /locus_tag="U1396_000395"
     CDS             complement(16719..17042)
                     /locus_tag="U1396_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM5341614.1"
                     /translation="MFKQLFSGMFSNSDSLPITDVEQAIQSSNAILLDVREVDEFASG
                     HIPQAINQPLSQLDQFKGDKTKNYLVICQSGMRSQRATEYLKSQGYQAINIKGGMNAW
                     TGGIA"
     gene            17161..17421
                     /locus_tag="U1396_000396"
     CDS             17161..17421
                     /locus_tag="U1396_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEM5341615.1"
                     /translation="MNTDKKKMINRLKRAEGQLRGIQKMIEEDQECIDIVTQLSAVRS
                     SINSMMGMVIAQKVQDCITHPSENPEEQEARLAQAINLIIKK"
     gene            17432..17989
                     /locus_tag="U1396_000397"
     CDS             17432..17989
                     /locus_tag="U1396_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HEM5341616.1"
                     /translation="MPTEKEKMIAGQFYMAADAELREMRTFARQQMKKFNEELDGQAR
                     SERLKNWLGATGERIYVEPNFYCDYGSNIHVGEDFYANFNCTMLDVCPITIGKNAMLG
                     PNVQLLTPLHPLDPDERNSGLEYGSPITIGDNFWAGGGVTILPGVTLGNNVVVGAGSV
                     VTKSFGDNVVLAGNPARVIKEIPKK"
     gene            18048..18891
                     /gene="dprA"
                     /locus_tag="U1396_000398"
                     /pseudo
     CDS             18048..18891
                     /gene="dprA"
                     /locus_tag="U1396_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735834.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
     gene            18984..21077
                     /gene="topA"
                     /locus_tag="U1396_000399"
     CDS             18984..21077
                     /gene="topA"
                     /locus_tag="U1396_000399"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEM5341617.1"
                     /translation="MATKTVSKKKTTTKKNLVIVESPAKAKTIEKYLGKNYKVVASVG
                     HIRDLKKSSMSIDFDNNYAPEYINIRGKGPLINSLKKEAKNAKQVFLASDPDREGEAI
                     SWHLAHILGLDANDKNRVVFNEITKDAVKNAFQEPRAINLDLVDAQQARRVLDRIVGY
                     SISPILWKKVKKGLSAGRVQSVALKLIIDRENEISNFKPEEYWTIDATFKKGSKKFQA
                     SFYGIDGKKTKIENNEQVKEILARLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAA
                     NKINFRTRKTMMVAQQLYEGVSLGTGGTQGLITYMRTDSTRISPVAQAQAADFITERF
                     GATYSKHGNKVKNASGAQDAHEAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVAS
                     QMAVAVFDTMSVRLGQNGIVFAANGSQVKFDGYMAVYNDADKNKMLPDMEQGDTVVRA
                     STNPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPT
                     ELGEIVNKLIVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPFKVELSKA
                     EEQMEKIQIKDEPAGFDCDVCGHEMVIKLGRFGKFYACSNFPDCRNTKQITKEIGVTC
                     PVCQKGQVIERKSKRNRLFYGCDRYPECEFTSWDKPVGRSCPKCDHYLVEKKVRGGGK
                     QVVCPNGDYEEDKIK"
     misc_feature    21493..21627
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            21654..22148
                     /locus_tag="U1396_000400"
     CDS             21654..22148
                     /locus_tag="U1396_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001287276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEM5341618.1"
                     /translation="MSEAIIAKKAELVNAVAEQMKAATSIVVVDARGLTVEQDTVLRR
                     NLRGAEVEYKVIKNSILRRAAEQAGLEGLAELFVGPSAVAFSNDAVAPAKTIYDFAKT
                     ADALEIKGGAVEGKVSSKEEIEALATLPNREGMLSMLLSVLQAPVRNVAYAVKAVAEK
                     EDAA"
     gene            22214..22579
                     /gene="rplL"
                     /locus_tag="U1396_000401"
     CDS             22214..22579
                     /gene="rplL"
                     /locus_tag="U1396_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEM5341619.1"
                     /translation="MALNIENIIAEIKEATILELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAEEAKDSFDVELTSAGDKKVGVIKVVREITGLGLKEAKELVDGAPAMVKEDVATA
                     EAEEIKAKLEEAGASVTLK"
     gene            22704..23453
                     /locus_tag="U1396_000402"
     CDS             22704..23453
                     /locus_tag="U1396_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5341620.1"
                     /translation="MKSYKNYIFDFYGTLVDIRTDENKLEVWNQLTQIYNAFGCSYRP
                     RQLKNAYHRFVEEAERFLAETVSYQYVEIDLETLFIRLLTDAPNENQSTNKPTDLETF
                     GQVVATIFRVLSREKLEAYENTLTSLQTLKDREARLFILSNAQRIFTQAEIEQTGCAD
                     LMEKIYISSDFKMKKPEPAFLQLVLEENNLDVKETVMVGNDLTSDIAIAHELGMDSIL
                     LNTFPYSQEEIDSYRRLGWNFEVVGDIAELL"
     gene            23649..24983
                     /gene="trmFO"
                     /locus_tag="U1396_000403"
     CDS             23649..24983
                     /gene="trmFO"
                     /locus_tag="U1396_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEM5341621.1"
                     /translation="MSQTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHK
                     TDKFAELVCSNSFRGDSLTNAVGLLKEEMRRLDSIIMRAGEAHRVPAGGAMAMDRENF
                     SQAVTDEIHNHPLIEVIRGEITDIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFY
                     DAAAPIVDSSTINMDLVYLKSRYDKGEAAYLNAPMNKEQFTAFYEALISAEEAPLNSF
                     EKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEYKTPYAVVQLRQ
                     DNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQT
                     FATKKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFRGEEPVIFPQTTAIGALPF
                     YITHTESKHFQPMNVNFGIIKELDGPRIRDKKERYEAIAERSLKDLEEFLTV"
     gene            25060..25896
                     /locus_tag="U1396_000404"
     CDS             25060..25896
                     /locus_tag="U1396_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5341622.1"
                     /translation="MIKEFNATVRYLESVLESEIDEREFLRISGYSVPMFSRLFSILT
                     DMSLSEYVRLRKLTRAAMDIREGQAKIIDIAFKYGYESSDSFAFAFKQFHQISPSQVR
                     KGLPFKVLLPLQLSLTIQGGKEMDVRIEKKAGFTVAGLLRTAISNEVCPQVWEDLFKN
                     HTYEELAALGSGQSFGVCTLAQADETINYMAAYDVTDSEKATKLGLELLDVHEADYAI
                     FTLIGPVPQSIHAGWRYALETFFPEHGYRHSGAPDFEYYFEGDMSSPDYQMELWIPIV
                     KA"
     gene            25961..26965
                     /locus_tag="U1396_000405"
     CDS             25961..26965
                     /locus_tag="U1396_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEM5341623.1"
                     /translation="MHHNTWKGIILQKQGLLKPQSVQQICQNLNGLQAQFQPYVHIGF
                     RNRMTNEAFQNQDWQASLTRQWSLRRTVHAYLKSEIPLYIHEGRMASVDYLETVSWDG
                     ALPQVKKKFYQVILEALETGPMTREELKILCRAENIGVEEEKQVFNAWGGLLRYMVER
                     GEIYQEYGVKRFHRLRDFQPLPKKEAELEIARRYFTGFGPVSLADARYYFKENKSTVL
                     KWMEQLDLKTVEVAGEERFYLGELEEAELPDCLFVAGFDQLLLGYEKKANPFFNPKYI
                     RNIYTLTGIVKPVVFYKGRFVATWKRDKGTILLDIFEDITQQEEKELEHYRQMFEKIL
                     "
BASE COUNT         8063 a         5094 c         6157 g         7677 t
ORIGIN      
        1 tcataacata ttgtattttg tttgtctata taaaattgta tttattttta gtcgaatttt
       61 acctcttcaa gtaggtaatt gatgaatttt tctcccatgt cggacagcaa tgccttttcg
      121 tgttgaatat agaccaattc gatttcatca tcaaattcca gaggaattga tacaatatta
      181 tctccgttaa gatttgaatt aaggatacct gttgcgattg tatagccatc tagaccgatt
      241 aagagattga agagtgtggc acggtcagat acgacaatcg attttttatg gtgttcctgg
      301 gctagaattt cttctgcaaa gtagaaggag ttgtgaatac cttgctcgta gctgagatag
      361 gggaaatcta ccaaatcatc gagagtgatt gactttcttt gtgccaaagg attggttttg
      421 ctgacaaata catgtggttt ggcagtgaag agagttgtat aggatagtcg attgtcatcc
      481 aaaagtttca gcaggacatc acggttgaaa tggttgagga aaagcactcc gatttctgag
      541 cggaaattct taacgtcatc aatgatttcc caggtccgtg tttcacgtag gaagagttca
      601 taatcttcca tctcagtttc tttcaaaagt gagacaaagg cgttgacgac aaaggcatag
      661 tgttgagaag agacgctaaa tagttggcgt tttgcattag gatttttata gcgatcttct
      721 aaaagctctg tctgttcaac aatttgacga gcataggaaa gaaactccat gccatccttt
      781 gtcagggtaa tgcccttaga attacggaaa aagattttaa ttttcatttc tttttccagg
      841 tctcgtacag cgttggaaag gctgggttgg gtaatgaaga gttgtttggc agcctcattc
      901 atactgcctg tttctgcaat tttgataata tagtataatt gttggattct catacctcta
      961 ttgtaacatg atttgacaaa ttattctaaa aaatgtataa tgctgaaaat atatccttta
     1021 actgagtcca gagaggcgaa gaagggaacg tgataaatag ggcaaatact gccttctttt
     1081 cgtgtaacct tgctagccag caaggttttt tctctatatc gactttcttg ttttctgtgt
     1141 cattgttata tagaatagga gaaaagatga ttttaaaaga acagatgtta ctggtggacc
     1201 aagtccaact agcgccacga atttttgcta tgaccttgca gggtaatatg gtccaagata
     1261 tgaaaatggg tcagtttatc catattcgtg ttccagatga ttccatgctc ttgcggagac
     1321 caatatctat ttccgagatt gatcggaata agtctcaatg tcggattatt taccgagtgg
     1381 aaggtcaagg gacggaagtc ttttcgaaaa tgacggtcgg gcagtatttg gatgttatgg
     1441 gaccgcttgg gaaagggttt gaagtagact ttctcaaaga aggtgaccgc attctcatca
     1501 ttggcggagg aatcggtgtt cctcccttgg tggaagtggc gaaacaggcg gcgaaccgtg
     1561 gcgccaaagt cacgtcagtc attggctttg ccaccaaaga ggccgtcatt ttggaagagg
     1621 aactggcaag ttatggggtg gtctatgtta caacagatga tggttcctat gggcgtaagg
     1681 ggaatgtcgc aacggtcgtt gaagagctga caaacgagtt tgcagccatt tactcatgtg
     1741 gggcgccagc tatgatgaac tatgttgacc aacgctttca ggaacatcct catgcctaca
     1801 tttcactgga ggctaggatg gcttgcggaa tgggggcttg ctatgcctgt gttgtcaaac
     1861 caaagcaggg acaagaacat gagaataagc gtgtctgcaa agaaggtcca gtctttgcga
     1921 ctggtagtct gattttatag gaggttgata tgacaaaacg attagcgatt tccttaccag
     1981 gcttggactt gaaaaatccc atcattccag cctctggttg cttcggtttt ggtcaggagt
     2041 atgcagatta ttatgacctt aaccagcttg gatccattat gattaaggcg actacccgtc
     2101 atcctcgtta tggcaatgcg actccccgtg tagccgagac accagcaggt atgctcaatg
     2161 ccattggact tcaaaatccg ggtgttgatg tagtcttatc cgaaaaactc ccctggttgg
     2221 aacagcattt tccagacttg cctatcattg ccaatgtggc tggtttttcc aatgaagaat
     2281 atgcctatgt gtcagggaaa atttcaaaag ctcctaatgt aaaagcaatt gaactaaata
     2341 tttcctgtcc caatgtggac cacggaaata atggtctctt gattggacag gtgccagaat
     2401 tagcctatca agcagtaaaa gcagcagtcg aagcctcatc tgtacctgtt tacgttaagc
     2461 tgacaccaag tgtggcagac ataaccctgt tggccaaggc tgctgaggct gctggagcga
     2521 ctggcttgac gatgataaat accttggttg gtatgcgatt caatctcaaa actcgacaac
     2581 caatcttggc aaatggtaca ggaggaatgt caggtccagc agtttttccg gttgctctca
     2641 aactcattcg tcaggttgct cagatgactg atttaccgat tattggtatg ggtggtgtgg
     2701 atacggcgga caaggctata gagatgatgg ttgcaggagc ttcagccatt ggggtaggaa
     2761 cagccaactt tacagaccca tttgcttgtc caaagattat tcaagatttg ccaaaacgca
     2821 tggaagttta tggtattgat agtttggaag gtttacgccg agaaatcaga catagattgg
     2881 gtaagcgttg acaaaggtaa aataaaagag taatataaag aaaatatctc ctttaactaa
     2941 gtccagagag gctaggaagg tgtcatgtaa tatgctggaa aggtgatttt caagctgaat
     3001 tcgtgcacat ccctgaccga tttggcaggg atttttgtgt aaatgaaagg attttatgaa
     3061 agaaacaaga ccaattattg cccttgactt tgcaggtaaa gaagaagttc agtcttttct
     3121 ggaacagttc ccaccagatg agaaactcta tgtaaaggtt ggaatggagt tgtattatgc
     3181 ggagggacca ggtattatca attatttgaa aggctgcggt cacagtattt ttctagattt
     3241 gaaactgcat gatattccta ataccgtcga gtctgctatg aaagtcttgg caaaactcgg
     3301 tgtggatatg accaacgttc acgctgctgg tggtgttgag atgatgcggg cagcacgaag
     3361 ggtattgggt aaggatgctg ttttaatagc ggtcactcag ttgacctcta cctcagaaga
     3421 gcagatgaga acggaccaga atatacagac tagtttgcag gaagcagttg ttcactatgc
     3481 tcaaagagca caagaagctg gtcttgatgg ggtggtttgt tcagcgcatg aggtggcttt
     3541 gattaaagat gctacaagtt ctgattttgt gtgcctgacg ccagggattc gtccgactgg
     3601 cggtgaagta ggcgatcaga aacgagttat gacacccgca gatgctgctc gaatcggtag
     3661 tgattacatt gtagtaggtc gcccgattac aaaatcagaa catccttacc agacctattt
     3721 atctattaaa gaggagtgga atcgtggata agatttatca gattataatc gatagaccta
     3781 tcgggtatat tgataaattt ggcaaccagt accccatcaa ttacggctat gttccaaatc
     3841 tattggctgg agatggtgaa gagcaagatg tttacatcat ttccaaagct gttcggcagc
     3901 ccttgacagc tttcgagggg aaattggtcg cgattataca tcgcagagat gatgttgagg
     3961 ataagtgggt tctgacaggc cttgatgaaa aacttaccgt gacagaaata aaagagaaaa
     4021 ccaatttcat tgaacagtat tttgattcat ggattgaaat ggtggactaa gagaagtctg
     4081 taagaattca acctggataa atatagtttt tatagggttc atagattgaa ccaatgcttt
     4141 aggagtgaca ggctattcgg cgggatggtc atgttggaat ggtacgcatt tagaaggagg
     4201 tctattatga cattagcaac agaaatcgca tcacacttat tggatattaa ggcagttcat
     4261 ctgcgtccag aaaagccatt tacatgggca tcagggatca aatcacctat ctatacagat
     4321 aatcgtatta cactatctta tcctgaaact cgaaatttga ttgaagatgg ctttgttcag
     4381 cgtatcgaag aagaatttcc tgaggttgag gtgattgccg gaactgccac agcaggtatt
     4441 cctcatggtg ctatcattgc agataggatg aatttgccat ttgcttatat ccgtagcaaa
     4501 ccaaaagatc atggtgcagg gaatcaatta gagggtcgca tcgtcaaggg acaaaaaatg
     4561 gttgtcgttg aagacctgat ttctactgga gggtctgttc tagatgccgt agcagcagct
     4621 gagcgtgaag gcgctgacgt tattggtgtt gtggcaatct ttacctatga attgccaaag
     4681 gcagattgta attttgataa tgctggcgtg aaattggtga cgcttagcaa ttattcagag
     4741 ttaatcaagg tcgcaaaagt acagggatat atcaatgcag atggtttgaa tctgcttaaa
     4801 aagttccgtc aaaatcaaga aacttggcag gaagactaga tttaaaacga gcccacgcac
     4861 gatttctggg aacttatcct gtaaaatggt ataatagtct ctaacgtatt ttgagaatac
     4921 aataattgac cgtatgagga gaagaacatg atttcagtta tcgtgccttg ttttaatgaa
     4981 gaagaggcaa ttccctattt ttacgatgct atggagaaag ttcgtaagga gatgggggaa
     5041 caatttgagt atatttttgt caatgatggt tcaaaggata ggacattaac ggttttacgc
     5101 caattgtctg gtcaagaccg agctgttcgc tatctttcct tttcaaggaa tttcgggaaa
     5161 gaagctgctc tctatgcagg tctacaagct gcgcaaggtg agctagtgac tgtcatggat
     5221 gttgatttac aagatccacc tgaaatgttg atggaaatga aggctatgtt ggatggaaat
     5281 ccagatttag attgcgttgg aacccgtcgt gtcagtcgag atggtgagcc accgattcgt
     5341 agcttttttg caaaattatt ctacaaattg atgaataaaa tcagccaggt cgaggtagta
     5401 gacggtgccc gtgatttccg tctcatgcgt cgtcacatgg tagatgccat tctatctgtg
     5461 tctgaataca atcgcttttc aaaaggaatt tttgcttggg taggattcga aacagaatac
     5521 ttgccctatg aaaatgttga gagggtcgct ggcgaaacta gttggtcttt ctggaaatta
     5581 ctttcttatt ctattgaagg aatcatcaat ttttcagata cacctttgaa tattgcctcc
     5641 tatacaggtt tcttcacctt cctattgtcg ctagttctaa tggtttttgt ggttttcaaa
     5701 accttggtgt tcggagatcc tacaattggc tggccgtcga ctatttgtat catcctattt
     5761 ttgggaggtc tgcagttgat gaccattggt attctcggta aatatttggc aaaagttttc
     5821 ttggaaacga agaaacgtcc gatttatatt gttaaagaga aaagttcaaa ctaggagcag
     5881 tttatggaac attcagcttg gcacgaattg ataaaggcac agttgccaga gcattatttt
     5941 ggtaaaatca atcagttttt agattatgtt tatgctggtg gaaccgttta tccgcctcgt
     6001 gagaaggtat ttgctgccat tcaaacaacg gatttggaag aggttaaagt agttattttg
     6061 ggacaggatc cctatcacgg acctggtcag gcacagggct tgtcattttc tgttccgaac
     6121 tcggtgccag ctccgccatc tcttcaaaac attttaaaag aattgacgga tgatattggc
     6181 gtcaaacaag atcatgattt gacagcatgg gcggaacaag gtgtgctttt actcaatgct
     6241 tgtttaactg ttccagcagg tcaggcaaat ggacatgcag ggcaaatctg ggagcctttt
     6301 acggacgctg ttattaaggt ggtcaatagc ttagaccagc ctgttgtcta tattctttgg
     6361 ggtgcttatg ctcgcaagaa aaaagcgttg ataaccaacc caaaacatct ggttatcgaa
     6421 tctgctcatc caagccctct ttcagcctat cgaggtttct ttggaggcaa gcccttctca
     6481 caagcaaatg cctacttgac ttcacaaggc agaacaggaa ttgattggct gcgatagtag
     6541 atggtaatgg ctttggtact acaaaggaga atatgaatgt tattagtgaa aaatggtcgt
     6601 gtattggatc cgcaatctgg tttagacaag gtttgcgaca tcttgatgga cggaagtgag
     6661 attgttaaga ttgcggagtc gatttcagaa gatgttgagc aagaagtgat tgatgcgaca
     6721 ggattagtcg ttgctcctgg tttggtcgat gttcatgtgc attttcggga gccaggtcag
     6781 acccataaag aagatattca tacaggagct ctttctgcag cagcgggtgg ttttacttct
     6841 gttgtcatga tggctaacac taatccgacg atttcaaatg ttgaaacctt aaaagaagta
     6901 ttggattccg ctaaaaaaga agctattcac atttatagtg tggcaaccat tacagatcat
     6961 ttcgacgggc aaaatctgac cgattttcct gctttgctgg aagctggagc ggtggccttt
     7021 tcggacgacg gtattccttt gacaaatgct ggcgtggtta gaaaagctat gaaattggcc
     7081 aaagagcagg gctgtctcat cagtctgcat gaagaagacc ctgacctgaa tggtgtcttg
     7141 ggactcaacg agcaagtggc tgaaaaacat tttcatgttt gtggagcaac aggcgtagca
     7201 gaatacagca tggtcgctcg cgatgtcatg attgcctatg aaacaggtgc gcgtgttcat
     7261 atccagcatc tatccaaagc cgagtcggtc aaggtggttg aatttgttca aggtctcgga
     7321 gcaaacgtca cggcagaagt agcaccccaa catttttcac gaactgagga cttacttcta
     7381 ataaaaggtg ccaatgctaa aatgaatccg ccactacgat tagaaagtga tcgcttggct
     7441 gtgattgatg ggttgaaatc tggtgttatc tctgtcattg cgacggacca tgcacctcat
     7501 catgcagatg agaaaaatgt agaggacctt acgcaagctc cgtcaggtat gacaggttta
     7561 gaaacctcac tttcattagg tctaactcat ctggtagaag atggacacct cactctcttg
     7621 caattgctgg agaagatgac tattaaccct gccaaactct acggccttga tgctggctat
     7681 cttgctgaaa atggcccagc tgatcttgtt atttttgacc caaatgcaaa tcggttggtc
     7741 acagcggatt ttgcctcgaa gtctgctaat tctccgtttg ttggtgatag tctgaaagga
     7801 caagtccttt acaccattgc aaatggacaa atagtatttg gtaaatagga aatgagcgga
     7861 ttagatagct aattcgctta tttcgaacct ttttgacatg taagcgattt taatgttttt
     7921 gttttttgat aaaaagtgta taatagagat ataaaaaatg ccgaagaaag gtctatttat
     7981 gaaaaagaaa aaaatcttgt tgcctgtaat gtccacactc ttgttggctc catttgtttt
     8041 agctcaacaa gtacaagctg ctgagacaac gactgcagct accacaacca atcagccagc
     8101 aacgacagat gcaactgcta cggtaccagc aacatctgtt gaaaatgtag caacggagga
     8161 aactgttgtc cctgctgcgg aagaaacagt agaggcagtc attatccaca caaacgacgt
     8221 tcacggtcgc attcttgaag aaaagaatgt tatcggtgac gctaaggctg cggcagtcat
     8281 tgaagaagaa cgtgccaaag tagaaaatac aattgtagta gatgctggtg atgccttcca
     8341 aggacttcca atttccaact ctacaaaagg tgaagaccgc gccaatatca tgaaccaagt
     8401 cggctatgat gcaatggctg ttggtaacca tgaatttgac tttgggatgg atcaagcaat
     8461 caagtacaag gaaaccttga acttcccgct attgagtgct aacacttacg ttaatggcgc
     8521 tcgtgttttt gaagcttcaa ctattgtcga taaaactcca actgttgtag gcgatgaatt
     8581 tgtagttatc ggtgtaacaa cacctgaaac tgctacaaaa acccatccga agaatgttga
     8641 gggagtaacg tttaccgacc cagtcacaga agtcaataaa gtgattgacg aagtggaagc
     8701 acgtgctcta gcagataatc gtgtttacaa gaactatatc attctagctc acctaggtgt
     8761 cgattctaca acacctgttg aatggagagg ttcaactctt gctgaagcac tttctaaaaa
     8821 tagtaaatta gccggtaaac gtgttattgt tatcgatggt cattcccaca cggtagaagc
     8881 gactacctat ggagataacg ttacttataa tcaaacaggc tcttacttga acaatattgg
     8941 taaagtaacc ttgaaatccg ataaattatt gggtgaagct agcttgattt ctgccgcaga
     9001 tactaagaac gtgacgccaa atgctaaaat cgcagccttg gttgatgaaa ttaaagcaaa
     9061 atatgaagct gaaaatgctc aagtagttat tgaaaataac ccagtggaat taaacggaga
     9121 ccgctcaaac gtgcgtgttc gtgaaaccaa cttggggaat gcagtgacgg atgcgattta
     9181 tgcctatggt caaacaggat tttcaaacaa aactagcctt gctgtgacta acggtggtgg
     9241 tctacgtgca acaattgcta aagatcagcc tgttacaaaa ggtgatatta ttgcagtctt
     9301 gccatttggt aacattgttt ctcaaatcac tgtgactggt cagcaaattt atgatatgtt
     9361 taccaagtct ttatcatcta cattgcaagt gaatccagaa actggcgaga tgcttttaga
     9421 tgaaaatggc atgccgctct ttgaagctag tggtggattc ctacacattt caggagcaaa
     9481 tgtattctac gatccaactc ttcctgtaga agaacgtgtt cttcttatcg gtattcttaa
     9541 tccagagact ggcgaatatg acgccttgga tcttgaaaaa acgtactatt tagcaacaaa
     9601 tgacttcctt gctgctggtg gtgatggcta cacaatgctt ggcggagcac gtgaagaagg
     9661 tccttcaatg gacagcgtct ttgctgaata cctaaagaca gctgacttat cagcttatga
     9721 ggttgtcaac ccatattcac gtatcattcc tgtaaattca agcattgata cggatgaaga
     9781 tggctaccca gactttatcg aaattttatt ggatactgat ccagaaaatc cagcctcaaa
     9841 tccagaaact gttccagccg aaaatacgga ttcaccatct aatcaagtac aaaatacttc
     9901 agcaacagac aagaaagctc cagttgattc tccgaaagta ggagataaaa aaacagaagt
     9961 agcaagtcca gtaaaaacta caaaagcagg agtcttgcca aatactggtg atcagatgaa
    10021 tctgacgctc agcctgtttg gtttaggtct tgcaggactg gccatggcag taggtcgtag
    10081 aaaagaaaat taatcaatca tctgaaaaca gggtcttcgg actctgtttt tgactggagg
    10141 aaacatgcaa actgtatttc aatatcaaaa agagggggat cgtgagcaga ttagttctta
    10201 cgttctgctt agcaactccc cacgtcgtaa acaattattg ggatttttac aaccacaaat
    10261 cgcatcagtt gaagtggatg agcgtggtat cgaagaacat tttatgaaac aattcgctac
    10321 agatgatttt ctcactcgag ctgcaaaaac ctgttgtgaa atttccaaag ccaaatcgga
    10381 catggatttg gtaactggtc atctctacat ttctgcggat acaatcgtcg tgtcagatgg
    10441 gcaaattttt aacaaacctc aagatttgac agaagctgaa atcatgttac gttcctattt
    10501 tggaaagagt catcacgttg taacatctgt ctgcctacgg acaagacact cactggatgt
    10561 tttttatacg gttgcacaaa ttgattttgt cgactattat ccagcccttg aagaggttat
    10621 tcaatcatat atccgtgaaa agcagccact cgacaaggca ggtgcatacg gtattcagga
    10681 gctggatcca cgctttgtgt cgggcatttc aggggatatt cacaccatta ttggtctacc
    10741 tgtagccgaa gtttcccgca ggattttttc tgaagaaggt tttgaaaaat agcagagctc
    10801 aatagctagt ttgtggtata atagtggtcg aaaaggagag tttatgaccg tcgacattga
    10861 aagatacaag caattggccc agcagaagca aggagaacat cgaaaatttc tagcaaattt
    10921 gaagaaaaaa gcacctaaaa atttggatag aattgttcaa gatattcatg ccgaagtatt
    10981 ttctgaaatc gactgtacag agtgtgccaa ctgttgtaaa acgttgggac cactctttac
    11041 agaagcagat attacccgaa ttgccaagca tttacgcatg aaacttccag tttttgagga
    11101 tatgtatttg cgtgtggatg aggacggaga taaggtattt caatccatgc catgtccctt
    11161 ccttggaggc gataatctat gtagtatcta tgatgctcgt cccaaagcct gtcgagaatt
    11221 tccgcatacc gaccgcaaga agatttatca aatcaacaat ttaacaataa aaaatactct
    11281 gatttgtccc gcagcctatc tctttgtcga aaagttacgg gagagaattt aagaggaaca
    11341 agtaagacaa aatattgatt ttctgctata ataataaaaa aacaagccgt ttttacggct
    11401 tttttcaatg aatcatattt aggaggaccc catggcaaca attcaatggt ttccgggcca
    11461 catgtcaaaa gctcgcaggc aggtgcagga gaacatcaag cacgttgatt tcgtgaccat
    11521 tttggtcgat gcccgtctgc ccctatccag ccaaaacccc atgttgacta agattgtcgg
    11581 tgacaagccc aagctcatga ttctcaacaa ggtcgactta gcagaccctg ttcgtaccaa
    11641 agaatggcag agctactttg aaggtcaagg catccgtacc cttgccatca actcaaaaga
    11701 gcaagcgacg gtgaaaaagg tgaccgacgc agccaagagt ctgatgaaag acaagattga
    11761 acgcctccgc gagagaggta ttcaaaaaga aaccttgcgg accatgatta tcggtattcc
    11821 aaacgctgga aaatccactc ttatgaaccg tctggctgga aagaaaattg ccgttgttgg
    11881 caacaaacca ggtgtgacga aaggccaaca gtggctcaag tccaataagg accttgaaat
    11941 ccttgataca ccaggtattc tctggcctaa gtttgaagac caggaagtcg gtctcaagtt
    12001 ggctctgaca ggagctatca aggaccaact tttgcctatg gacgaagtca ccatttttgg
    12061 tttggactat ttcaaggcca actatccaga acgtctacaa gagcggttca agggcatgga
    12121 tttggagcag gaaacgcctg aactcatcat ggactggacc aagaaattgg gctttcgtga
    12181 tgattatgac cgtttttaca acctctttgt caaggacgtt cgggacggtc gcttgggtac
    12241 ttatacatta gacagggtga gtgacttaga tggcaacgat taaggaagtg actactctgc
    12301 tagctcaggt ggacagtctg gacagtcctg tctgggcgga actatctcag gatgagcgag
    12361 caggggtcca ggctgccatc aagaaacgcc gtaaggagct ggataaagaa gtagcagaag
    12421 atgcccgctt agaagctatg ctattttacg aaaaaaacct ttatgaaaat ggggtggagt
    12481 tcatcgctgg tatcgacgaa gtcggccggg ggcctctagc aggtcctgtg gtggcagcgg
    12541 cggtcatctt gcctaaaggt tgtaaaatcc gctacctcaa cgactccaag aaaatcccta
    12601 agtccaagca tgaagcaatc taccaagaag tcatggagcg agcggtggca gtcggtgtgg
    12661 gaataaaaga tgcagctgtc attgaccagg tcaatatcta cgaggcgacc aagttagcta
    12721 tgttggaggc ttttgggaaa ttaagccaga aacctgacca cttgctcata gacgccatga
    12781 agttggatac gcccatacca caaacttcta tcatcaaggg agatgccaat agcctatcta
    12841 tcgcagctgc ctctatcgtg gccaaggtga cgcgggataa gatgatggcg gactatgaca
    12901 aggagttctc aggctacggc ttcgccaaga atgctggtta tggaacggca gagcatttgg
    12961 aaggcttgaa caagttaggc atcacgccta ttcaccgtaa gacctttgag cctattaagt
    13021 ctatggtaac aggagggaaa tcgtcgtgac ggtctttttc tggatttttc tagcttccat
    13081 aggcttattt ggtctcctat atttctggga gcgacggtcg atttttatct cactgtttgc
    13141 cttgaatatc ctcgtctggg ccttggcatg gattatctca acaggcattc tcgaaaacaa
    13201 tgaaatcttg cgcttgctgg ctatagcagt ggctatggtg ctctttttag ccttcttaag
    13261 tggtccattt gtcttgcttt tcacacttta tctaaatggt tttcagattt tggagagaga
    13321 aggggttcgc ttccataatt tcctatccat gggactggcg gtagccctga ctttctatct
    13381 cttcatcgct ccctttgtgg ttcaatccct gtctggtatt agtttgttaa acatggtgtt
    13441 tgtctatgtt ggatttttag tgtcttatgc cattatcatc agcatgctct ataccacgtc
    13501 tagctttgtc aattttgtca atctcttccc aggaaagctt gattatgtag tggtcttagg
    13561 tgctggcttg attggtgaca aggtaacgcc acttttggct tcgcggattg acaaaggcat
    13621 agcgatttat cagaagcagc ctggcagtaa gctcatcatg tcaggcggac aaggtcctga
    13681 tgaactcata gctgaaggtc aagctatggc aaattatgcc ttggaacagg gtatccctgc
    13741 ggaggacatc attattgaaa accaatcgac caacacagaa gaaaatttga aattttccta
    13801 tgccctgatg aaacctggca gtcgatttgc acttgtaacc aattactatc acgttttcag
    13861 agctctgcta ttggcacgac aattgaaaat caaatgtatc ggctacggcg caaaaaccaa
    13921 attttacttt agcctcaatg cctttattcg ggaatttgta ggctatgtag tcatgagccg
    13981 aaagacgcat ttggtctttt tgagcatcgt gtcagccctt tacctgatcg gagtgatcat
    14041 cagtttaatg cattaaaaac agcctctagg tgactagaag ctgttttctt ataacataaa
    14101 gtagacaatg gcgatatatt gaagtgccga agctagtagg ataaagagat gccaaatcat
    14161 gtgaaagtag ggctttttct tggcgtagaa gagggctcca atagtataag ataatccacc
    14221 agccagcatg agaatgccaa atgccattcc agtcttttga agaatggctg gcaagataaa
    14281 gacaactagc cagcccatga aaagatagag gaagaggctg aatttttcgt ttattttttt
    14341 agcaaaaatt ttatagagta taccgaaaat agtcaatccc cattgcaaac ctacaatcag
    14401 ataacctagc caaccaccga ccaaggatag ggcaacaggt gtgtagcttc cagcgatagc
    14461 aatgtaaatc atgctatggt cgataatcct caggatgtat ttgtgagtag aagcataggg
    14521 catggagtgg tagatggaag aggataggaa catgagaaat aggctgatga caaagatgga
    14581 cataccaatc acagcggtca ggttataatc ttgataggaa tgaatagcag taacggggag
    14641 caagaccaac ataagcaggg ctccgactgc atgtgtgaca ctgttagcaa cctcctctcc
    14701 aaaggatagt tgcaggctca atttcaaact aggattcatg gtgactcctt tctaactcca
    14761 tagtgagttg acgggttttg tagtaaagtt tgacagattg acaagcgtag cgaatgatgt
    14821 caggggtttc ttcattttcc tcgtttcgca tgcagtcaac aaaatgattg tagagtgttt
    14881 ctgaatgact cgattggaga agaagatgta aggtctgact gatttcttga atagaaaaga
    14941 cattttttaa gatagtcaag gcaatcaagc gggcaacttg ctgtttttga tattttttct
    15001 taacaggttt ttcaatctgt ttatgtttga catagttatt gatcatggca gcagtcaata
    15061 ctcttcgaaa atcaacatta tccgttgtca acttgccttg atgaacccca gttctatcat
    15121 cggtttcgtt tcctaggcta ctgttgattt tcattgagta taaacttttc tgttcaaggc
    15181 tttcctgaga attgactact tgattaacat acagcagaac ttggtccaaa tacaaatcta
    15241 aattaggtaa ttcatgccag taggggatgg tctgtttcat gattatccac tttcttttat
    15301 ctagtaatga taactagatt gtacgatatc caatattaaa agtcaagaaa aaaccttctg
    15361 gacccaaaat cacagaaggt tagttgctta tggttggata atattttctg gtaaagccat
    15421 cttatagagt gaaaaggcac catctaggtt tttaacacca aagccctttt ctttcaagat
    15481 tcgttcggca atataagaac gaagtccact atggcagatg acaatgtatt cttttgaagc
    15541 atccagttct ccaactcgct cacggagttg gtccaaagga atgtgaatga attctctgaa
    15601 ttgcccattt gcgacctcac caggataata acctgcatgg tcttttccag ttgtatgaat
    15661 aatggcatgc tcatagccga gtgattgaac agtacgttcg cttaaaccag ttgaggcggc
    15721 agctaggtca aagactttaa cgatagctgt tccaatagaa cctttgtttt ttctatcaag
    15781 tccagcgata acatccgcca cctgtctgcc ttgtcggttg gcaggagaag ccagagaaat
    15841 caaggcatct tgacctgtaa tttcttgttt aacaacaata gcatcaccaa cagcataaat
    15901 attattctga ctggtttggt agtttttatc tacgagaata ccaccacgga gacccagttc
    15961 aattccagtt tttttagcca gttggctgtc gggagcaact ccgactgaga gaatggtcac
    16021 atcagatgac aaggtttgtc cgttagacaa ttctagaacc tgtccttttt catgaaaagc
    16081 agtaacagac tgcccagtga taacctcgat acctttattg gttagctctg cttccacata
    16141 tcgtgccatt tctaagtcaa aagtaggtaa aacatgggga gcttgttcga caagcgtgac
    16201 cttccagcct tttaaagcta agttttccgc catttccaga ccgataaaac ctgcaccaat
    16261 taccacaaca tgaccagact tgatctggtc tagtttaatc ataatcttgt ccaaatcagg
    16321 tacgttccga agagtaaaga gattgtttgc ttcttcaata ccagatagat ttggaatgac
    16381 aggcttggcg ccgggtgata agattagttt gtcgtagctt tcaatcaact caccagtagg
    16441 cgttttgact gttacagttt gctgctcagc atcgatgcta ataacttcat ggaaggggcg
    16501 tacatctaga ttaaagcgtt gtttcaaact ttctggcgtt tggaggagca agctatcatg
    16561 ttctgctatt tcaccagaaa tgtaataagg taaaccgcag ttggcaaagg aaacataagg
    16621 tcctttttcg aatacgatga tttcagcatc ttccataaga cgacgcagac gagtagctgc
    16681 tgacatacca ccagcgacac cacctacaat aattattttc atgctattcc tcctgtccag
    16741 gcattcatac cgcctttaat gttgattgct tgatagcctt gagatttaag atattctgtc
    16801 gcccgttggc tacgcatgcc agattgacag atgacaagat agttcttggt tttgtcgcct
    16861 ttaaattggt caagttgact taaaggctgg ttgatagctt gtggaatatg tccactagca
    16921 aattcgtcga cttcgcgaac atcaagcaaa atagcattcg atgattgtat cgcttgttct
    16981 acatcagtta tcggaagact atctgagttt gaaaacattc ctgaaaataa ttgtttaaac
    17041 attgttactc ctttttactc ctttttatac ccatgggggt atctaaaata tatcaaggaa
    17101 ttcaaaagat gtcaaggtaa aaaattgaca tttttcactt caagcagtac tatatagggt
    17161 atgaatactg ataagaaaaa gatgataaac cgtttgaaac gggccgaagg tcaactcaga
    17221 ggcattcaga aaatgattga agaagatcag gaatgtattg atattgtaac tcagttgagt
    17281 gctgttcgtt ccagcattaa tagtatgatg ggaatggtta ttgctcagaa ggtacaagat
    17341 tgtatcactc atccatctga aaaccctgaa gaacaagaag ctcgtcttgc tcaagctatc
    17401 aatttaatca taaaaaaata ggagcagaag tatgccaaca gaaaaagaaa agatgatagc
    17461 tgggcaattt tatatggcag cagatgctga attgagagag atgcgaacct ttgcccgcca
    17521 acagatgaaa aaatttaacg aagaactaga tggacaagcc cgctctgagc gattgaaaaa
    17581 ctggttggga gctacaggtg agcggattta cgtggagcca aatttctact gtgactacgg
    17641 tagcaatatt catgttggtg aggattttta cgcaaatttt aactgtacga tgttggatgt
    17701 ttgtcccatt accattggga aaaatgccat gcttggtccc aatgtacagt tgctaactcc
    17761 acttcatcca ctagatcctg atgaacgaaa ttctggtttg gaatatggct ctccaattac
    17821 cattggtgat aatttctggg ctggtggtgg tgtgacaatc ttacctggcg tgaccttggg
    17881 aaacaatgta gttgttggtg ctggttccgt tgtgaccaag tcttttggtg ataatgtcgt
    17941 tttggctggc aatcctgcgc gtgttatcaa agaaatacct aaaaaataat tcttcttcgg
    18001 gagaattttt tctttgcctt gcgaatagac taagtgaggt gaagaaaatg aataattttg
    18061 aattgtttaa atggaaaaaa gcgggtttga ccaatcttaa tgtgaacaaa gttttggcct
    18121 atcaagaaaa acacggtaaa aaattgacct tgcgaaatgt cgctgtagtg tctgaatgta
    18181 aaaatccagt tctatttatg gaaaattata agaatctaga tacaaaagct tgtcgcgagg
    18241 aatttaataa gtatccatca ttttcaattt tagatgacat ctatcctttg gcgctcaaac
    18301 agatttacaa tccacctgta cttttgtttt atcaagggga tttagaattg ctagaaaaat
    18361 caaagctggc agttgttggt acacgaaatg ccagtaaaaa tggcgttcag tctgttcaga
    18421 agattatcaa agaactcaac aatcgctttg tcattgtcag tggtttggca agaggaattg
    18481 atacagctgc ccatattgct agcctgaaaa atggtggaca aaccattgcc gttattggaa
    18541 caggtttgga taagatatat cccaaagaaa atagagaatt acagacctac atcggaaaac
    18601 atcatttggt tctgactgaa tatggaccag gtacagaccc tctcaagtac catttcccag
    18661 aacgcaatcg cataatagct ggtttggtgg aaggattggt agtctgtgaa gctaagatgc
    18721 ggtctggtag cctcattacc tgtgaacgtg cccttggaag aaggaagaga agtctatgct
    18781 attccaggtt ccattatgga cggaaaatca gatggttgtc atcatctgat tcaagaggga
    18841 gcaaagtgcg ttacatccgg cttggacatc atttcagagt atcaatttta aaacaagtct
    18901 tcctatagga aaataaatat cttgacactg actgaaaaat agtatattct ttgtgaggtt
    18961 aaaaatattt gtaaggtata agaatggcta caaaaacagt tagtaagaaa aaaacaacaa
    19021 ccaagaaaaa tctcgttatt gtagagtcgc ctgctaaggc aaaaacaatc gaaaaatatc
    19081 ttggtaaaaa ttataaggtc gttgcttcag tcgggcatat tcgagatttg aagaaatcta
    19141 gtatgtctat tgattttgat aacaactatg cacctgagta catcaacata cgtggaaaag
    19201 gaccactcat caattctttg aaaaaagaag caaaaaatgc taagcaagtc tttctcgcga
    19261 gtgacccgga ccgcgaagga gaagcaattt cttggcattt ggctcacatt ttgggattgg
    19321 acgcaaacga taaaaaccgt gttgtcttta atgaaattac aaaagatgca gtaaaaaatg
    19381 cctttcagga gccacgtgct attaacctag acttggtaga tgcccagcaa gctcgtcgcg
    19441 tcttagaccg tattgtaggg tactccatat cacctatttt atggaagaaa gtcaaaaaag
    19501 gtctgtcagc aggacgtgtt caatcggttg ctctcaaatt aataatcgac cgtgaaaatg
    19561 aaatcagcaa tttcaaacca gaagaatatt ggacaattga tgcaaccttc aaaaaaggga
    19621 gcaagaaatt ccaggcttca ttctacggta tagatggaaa gaaaactaaa attgaaaaca
    19681 atgagcaggt taaagaaatt ctcgcccgac ttgatggaga tgatttctta gtagaacagg
    19741 ttgagcgtaa ggaacgcaaa cgaaatgcac ctctacctta cacaacttct actatgcaga
    19801 tggatgcggc taataaaatc aatttccgta ctcgtaaaac catgatggtt gcccaacaac
    19861 tttatgaggg tgtcagtctt ggcacaggtg gtacccaagg tttgattacc tatatgcgta
    19921 cggattcaac acgtattagc cctgttgcac aagcacaagc tgctgacttt atcacggagc
    19981 gttttggtgc tacctattca aagcatggta ataaagtaaa aaatgccagt ggtgcacaag
    20041 atgcccacga agccattcgt ccatcaaatg ttaacttaac acctgaatca attgcaaaat
    20101 atctggacaa ggaccagttg cgactatata cactgatttg gaatcgtttt gtcgcaagtc
    20161 agatggctgt agcagttttt gataccatga gtgttcgttt gggtcaaaat ggtattgtct
    20221 ttgctgctaa tggtagccaa gtaaaattcg atggttatat ggctgtctat aacgacgctg
    20281 ataaaaataa aatgttgcca gatatggaac aaggtgacac ggtggtgcgc gcgtcaacaa
    20341 atccagaaca acactttact cagccaccag ctcgctactc tgaagcaacc ttaattaaaa
    20401 cattagaaga gaatggtgta ggtcgcccgt caacctatgc accaacgatt gaaaccattc
    20461 aaaaacgcta ttatgttaag cttgcggcta agcgatttga accaactgaa ctcggagaaa
    20521 tcgttaataa gctgattgtt gaatttttcc cagatattgt caatgtcaaa tttacagccg
    20581 atatggagca aaaattggat gatgtagaaa tcgggaaaga gcagtggcag aaggtcattg
    20641 acggtttcta tcagccattc aaggtagaat tatctaaggc agaagaacag atggaaaaaa
    20701 tccaaattaa ggatgaacca gctggctttg actgtgatgt ttgtggacat gaaatggtta
    20761 ttaaattagg tcgctttgga aaattctatg catgcagcaa tttcccagac tgtcgcaata
    20821 ccaagcaaat cactaaagaa atcggtgtga cttgtccagt ttgccaaaaa gggcaagtga
    20881 ttgaacgcaa gagtaaacgc aatcgtcttt tctatggttg cgatcgctac ccagagtgtg
    20941 aatttacttc ttgggacaag ccagtcgggc gttcttgtcc gaaatgcgac cactatctcg
    21001 ttgagaaaaa agttcgtggt ggtggtaaac aagttgtctg tccaaatggt gactacgaag
    21061 aagacaagat taaataagat taaactgcta ttctcaaggg aatggcagtt gttttttaga
    21121 gtcatgttta gtttatctta gcttacttcg acaagcgagg aaacttcgtc tccttatttt
    21181 caactttaaa cgaggctggt caaaaagtcc aaagtcactt ctcagtgcag tggttgattg
    21241 ggtttaacag gccagtggag tgaaactgtt cagtgaactg tttcagcctg agcttagaaa
    21301 tgaaaaaatc gaggtaaaaa ggttggagat aagatttgcg aagcaaatca cagcaatttg
    21361 tgtttcacat tccaagtctg acctctacaa ctaaaacgaa ctaaacggca atactgcttg
    21421 aaaaaatgtt taaaaaatta aaaaaatagg agaaaagtct tgcattattg aaaatactgt
    21481 gttatgataa ttgaggtttg aaaaaactga cctaagacag taggggagct ggactcataa
    21541 acatcctacc gaggcacaaa acgattattg agataaacgt atttgtactt tcgtgtctag
    21601 gtttaggtgc gatttttttg tgcctagccc aaaataaaaa cggaggtaaa aaaatgagtg
    21661 aagctattat cgctaaaaaa gcggaattag taaatgccgt tgctgagcaa atgaaagctg
    21721 caacatctat cgttgttgta gacgctcgtg gtttgacagt agaacaagat acagttcttc
    21781 gtcgtaactt gcgtggtgca gaagttgagt acaaagttat caaaaactca atcttgcgtc
    21841 gtgctgctga gcaagctggt cttgaaggtc ttgcagaatt gtttgtaggt ccatctgcag
    21901 ttgcattctc aaacgatgca gttgctccag ctaaaacaat ttacgatttc gcgaaaactg
    21961 ctgatgctct tgaaatcaaa ggtggtgctg tagaaggtaa agtttcttct aaagaagaaa
    22021 tcgaagcact tgctacattg ccaaaccgcg aaggcatgct ttctatgttg ctttctgtac
    22081 ttcaagcgcc agttcgcaac gttgcatacg ctgtcaaagc tgttgcagaa aaagaagacg
    22141 cagcttaatg cgtcagagtg tagctgctta gtgctacaaa ctatttaaaa acctaaattg
    22201 gaggaaaatc acaatggcat tgaacattga aaacattatt gctgaaatta aagaagctac
    22261 tatccttgag cttaacgacc ttgttaaagc tatcgaagaa gaatttggtg taactgcggc
    22321 tgctcctgta gctgttgctg cagctggtgg tgctgctgaa gaagctaaag attcattcga
    22381 cgttgaattg acatctgctg gcgacaaaaa agttggcgtt atcaaagttg tacgtgaaat
    22441 cactggtctt ggtcttaaag aagctaaaga gcttgttgac ggtgcaccag ctatggttaa
    22501 agaagacgtt gcaactgcag aagctgaaga aatcaaagct aaattggaag aagcaggcgc
    22561 ttcagttact cttaaataat agagtttcca atcaaaataa aaacctatca cttaatgtgg
    22621 taggtttttt cgttctattg ttgcaaacgt tttcgttgtg gggtataata taaaaaatga
    22681 tgtctaaaga ttaggagaaa gacatgaaaa gttacaaaaa ctatatcttc gatttttatg
    22741 gtacattggt tgatattcgt acagatgaga ataaactaga ggtctggaat cagctaacac
    22801 agatttacaa tgcttttggt tgttcctatc gaccgcgcca gttgaaaaat gcctatcatc
    22861 gttttgtaga agaggcagag agatttctcg cggaaacagt gagttatcag tatgtcgaaa
    22921 ttgatttaga aacactcttc attcgcctat taacggatgc accaaatgaa aaccaaagta
    22981 ccaataagcc gactgattta gagacttttg ggcaagtagt agccacgatt ttccgcgtgc
    23041 tttcacgtga aaagttagag gcttatgaaa ataccctaac tagtctacag acattaaagg
    23101 atagagaagc gcgattattt attctctcca atgctcaacg aatttttact caggcagaaa
    23161 ttgaacagac aggttgtgct gatttgatgg aaaaaattta tatctcctct gactttaaga
    23221 tgaagaagcc tgaaccagca tttcttcaac tggttttaga ggaaaataat cttgatgtta
    23281 aggaaacggt tatggttggt aatgatttga catccgatat agctattgct catgaattgg
    23341 gaatggattc cattttgctg aatactttcc cgtatagtca ggaagaaatc gactcttata
    23401 ggagacttgg ttggaatttt gaggttgttg gagatatagc ggagctattg taaataagcg
    23461 atagaacagt aaagaatata cataaaatat attatgtaaa aaggtgaaac tacttttatt
    23521 tcaatgaagg tagttttgtc ttttctagcc attttctggt atactagata ggtataaaat
    23581 ttagaaaggt tctgttttgg ggtattccca aacagtagtc agatattctg actagaggta
    23641 ttagtttcat gtctcaaacc cacattaacg ttatcggagc tggcttggct ggctcagaag
    23701 ctgcttatca gattgccaaa cgtggcattc ctgtcaaact ttacgagatg cgtggtgtca
    23761 agccgactcc tcagcacaaa acggacaagt ttgcggaatt ggtttgttcc aattcattcc
    23821 gtggtgatag tttgaccaac gctgtcggtc ttctcaagga agaaatgcgt cgcttggatt
    23881 ccattatcat gcgagctggt gaggctcacc gtgtgcctgc tggcggtgct atggccatgg
    23941 accgtgagaa tttctcccaa gcggtcacag atgagattca caatcaccca ctgattgagg
    24001 tcattcgcgg tgagattacg gacattcctg acgatgctat tacagttatc gcgacggggc
    24061 ctttgacatc tgacgccttg gcggagaaga ttcacgcact caatggtggc gacggttttt
    24121 acttctacga tgcggcagca ccgattgtcg atagttcgac cattaacatg gacttggttt
    24181 atctcaagtc ccgttatgat aagggagagg ctgcctatct caatgctccg atgaacaagg
    24241 agcagtttac cgctttctat gaggccttga tttcagccga ggaagcaccg ctcaattcct
    24301 ttgaaaaaga aaaatatttt gaaggctgta tgcccattga agtcatggcc aaacgtggga
    24361 tcaaaaccat gttgtatggt ccgatgaagc cagtcggtct ggaataccca gaagactaca
    24421 agggacctcg tgacggtgaa tacaagacac cctatgctgt tgtccaactc cgtcaggaca
    24481 acgcagcagg tagcctttac aatattgttg gcttccagac tcaccttaag tggggcgagc
    24541 agaagcgggt cttccagatg attccaggcc ttgaaaatgc tgaatttgtc cgttatggtg
    24601 tcatgcaccg caattcctac atggattcgc caaacctatt ggaacagacc tttgcgacca
    24661 agaaaaatcc aaatcttttc tttgcaggtc aaatgacagg agtagaaggc tatgttgagt
    24721 ctgccgcttc tggcttagtg gccggtatca atgctgttcg tcgcttccga ggcgaagagc
    24781 cggtcatctt cccacagacc acagccatcg gtgctctgcc attctacatc acccacacag
    24841 aaagcaagca cttccagcct atgaatgtca actttggcat catcaaggag ctggatggac
    24901 cacgtatccg cgataagaag gagcgttatg aagcaatagc agagcgttcc ctcaaggact
    24961 tggaagagtt tttgacggtt taagccgata gttttccgac gaaaagtatc gggaaaactt
    25021 ggatggtaga cggtaaactg atagggaaag gggaagttga tgataaaaga gttcaatgca
    25081 accgtacgtt acctagagtc cgttttagaa agcgaaatcg atgaacggga atttttgcgc
    25141 atatcaggat attccgttcc catgtttagt cgtctctttt cgattctgac agatatgtcc
    25201 ttgtcagaat acgttcggtt acgaaagttg acgcgagctg ctatggacat tcgtgaagga
    25261 caggcaaaga ttatagatat agcctttaaa tatgggtatg aatcttcgga ttcttttgcc
    25321 tttgccttca aacaatttca tcagatttct cctagtcaag tgcgtaaggg gttgcctttt
    25381 aaggtcctct tacccttgca actatcatta accatccaag gaggtaaaga aatggatgtt
    25441 cgtattgaaa agaaggctgg ttttacagtt gctggacttc ttcgcacagc aatcagtaac
    25501 gaagtgtgtc cgcaggtatg ggaagacttg ttcaagaacc atacttatga agagttagct
    25561 gctctaggaa gtgggcagtc ctttggagtt tgtacattag ctcaagcgga cgagacgatt
    25621 aattatatgg ctgcttatga tgtcacagat agtgaaaaag cgactaagtt aggcttagaa
    25681 cttcttgatg ttcacgaagc tgactatgct atttttaccc taataggccc tgttcctcaa
    25741 tctattcatg caggatggcg ttatgcgcta gaaacttttt ttcctgaaca cggctatcgc
    25801 cattcaggtg caccagattt tgagtactat tttgaaggag acatgagttc cccagactac
    25861 caaatggaac tctggattcc cattgtgaaa gcataatgta caggacacct tcgggtgtct
    25921 tttgtgttat actgggatta gaaagcggag gagaaatacg atgcaccaca atacttggaa
    25981 gggaattatt ctgcagaaac aaggtctgtt gaaacctcag tctgttcagc aaatctgcca
    26041 aaatctcaat ggtttgcagg cacaatttca gccctatgta catatcggtt ttcgtaatcg
    26101 aatgaccaat gaagcatttc aaaatcagga ctggcaagcc tcactgacac gccaatggtc
    26161 acttcgacgg acagttcatg cctacctcaa atcggaaatt cctctctata ttcatgaagg
    26221 gagaatggca agcgttgatt atcttgaaac agtaagttgg gatggtgctc taccacaggt
    26281 taagaaaaaa ttttatcaag ttattttgga agccttagaa actggcccta tgactcgtga
    26341 agagttgaaa attctttgcc gagctgagaa cattggagta gaagaagaga aacaagtttt
    26401 caatgcatgg ggtggtctcc ttcgttatat ggttgaacga ggagaaattt accaagagta
    26461 tggggtaaaa aggtttcatc ggttacgtga ctttcaacca ctaccaaaga aagaagcaga
    26521 gctggaaatc gctcgacggt attttacagg ttttgggcca gtcagtttag cggatgctcg
    26581 ttattatttc aaggaaaata aatctacggt cctaaaatgg atggagcaat tagatttaaa
    26641 aaccgttgag gtagcaggag aagaacgctt ttatctggga gaattagaag aagcagaact
    26701 ccctgactgc ctcttcgttg caggatttga ccaacttttg ctaggctatg aaaagaaagc
    26761 taatcccttt tttaatccta aatacatccg taatatctat actttgacgg gtattgtcaa
    26821 acctgttgta ttttataaag ggcgatttgt ggcaacctgg aaacgagata aaggtactat
    26881 tttgctagat atttttgaag atatcacaca acaagaagaa aaagaattgg agcattaccg
    26941 ccaaatgttt gagaaaattc tgtgacatta actaactatt ttcggaaaat c
//
LOCUS       DASGBY010000012        26951 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.012, whole genome shotgun sequence.
ACCESSION   DASGBY010000012 DASGBY010000000
VERSION     DASGBY010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26951
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.012"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..775
                     /locus_tag="U1396_000406"
     CDS             <1..775
                     /locus_tag="U1396_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341624.1"
                     /translation="VALLVLLAIGFVMSFWYILLPTGLLIGYFYKREAIQRFLNRDSI
                     KRSQVLALSIRSGYEKHQELFVEKGEDKVVLQLRNRLLGQLFELDQLYQKVGKYLNGY
                     ESKEVVDTLQLKYHLKLPEAKTEKNTDTQVSTGGNAVMDEQGMIADLAPEILETYCNI
                     QRDNLVILEKLEKATDKREELTAIHEANMNRFNDILQGYLKIKKSPKDYFNAEERLVQ
                     AKSAMEMFDKDLDDTIKQFNEAGMKDFEVSLRMMKREEE"
     gene            781..2052
                     /locus_tag="U1396_000407"
     CDS             781..2052
                     /locus_tag="U1396_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HEM5341625.1"
                     /translation="MSGFNFDIDQIANNSLSTKDKTTELIQATPTGDNSKVSFLAQLT
                     PEQQTGIRAKAPQLVDNFLANQNALLDFGKEAVEEVNATVNHILSEQKKIEIPQVDEL
                     LANTNRELNGFVAKYKDISTTAELEKKPGFFQRLFKQTKNDLQEFYFDSQTIEKKMDS
                     MAASVVKQEEVLARNIVSAELLIENNTKSIENLVGVIAFIEATGQEAAERAKLAQENL
                     ATLVPTTVDYQVASEKLARVTEVANILEQQHSEYMSRLYVAWTTTPQMRNLVKVSSDM
                     KQRLGMLRRNTIPTMKLSIAQLGILQQSIKSSQTADAIVNANNAALQMLADTSKEAIP
                     MMERTAQNPTLSVASVTKLAESLVAQNNGIIAAIDEGRQKRRELEAAIVRSAETINDS
                     VKLRDQKIIAALLEQGKEAQSEAEQPLETNQ"
     gene            complement(2089..2955)
                     /locus_tag="U1396_000408"
     CDS             complement(2089..2955)
                     /locus_tag="U1396_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5341626.1"
                     /translation="MVRLKNILLILLGAGLFAFGLNYLIMPNRLFEGGATGLTLIIYY
                     LFHIQPWIMNIVINIPLFILGWKILGKKTLYLSILGTFSVTFWLAIFEKIHFSINLQQ
                     DLILVSILGGILMGLGLGTIFRAGGTTGGSDIIARIGHKFLPYSIGQIILAVDILILT
                     LIVIVFKDLRTVLYTLMMVAIASKVIDFVTEGGYGSKGVMIVSQKSDQLAQAIDCEIE
                     RGVTFIKAQGFYSKADVNMIYSVIYKSQLQEMKELIHRIDPHAFITITDAHEVLGEGF
                     TLDRDKKPIERH"
     gene            3130..3768
                     /locus_tag="U1396_000409"
     CDS             3130..3768
                     /locus_tag="U1396_000409"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEM5341627.1"
                     /translation="MRNGFFITFEGPDGAGKTTVLQQLLPALQELGPEVVTTREPGGV
                     AIAEEIRNIILNPANTEMDDKTELLLFIAARRQHLKEKILPPLAQGKLLLIDRFIDSS
                     IAYQGFGRGLDIGDIHWLNQFATDGLKPDLTLYFDIDTEEGLARIARNADRDVDRLDM
                     EKADMHRRVRQGYLNILEQEPERFVKIDASQPLEAVVADALAVIKKRFAERT"
     gene            3765..4649
                     /locus_tag="U1396_000410"
     CDS             3765..4649
                     /locus_tag="U1396_000410"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEM5341628.1"
                     /translation="MKIEELRNLQPNVFQRFVTILEQRRLVHAYLFSGDFASFDMAIF
                     LSQSLFCQEKEGVLPCQKCRSCRLIEANEFSDLTVIAPQGNVIKTDTIRELVKNFSQS
                     GFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHILLLTNQEEAVLPTIKSRTQI
                     IGFPKNIPAMERMLEEEGLLKTQANLLAQLVSSQEEAKKLAENKNFLDLMGQTKKFTD
                     LLLVEPTRAYLQVGILVSLAVEKAEQGRLFDLLSLILSEKMMESANVREKMDAVLKAK
                     KMWQANVSLQNSLEYITL"
     gene            4669..4986
                     /gene="yabA"
                     /locus_tag="U1396_000411"
     CDS             4669..4986
                     /gene="yabA"
                     /locus_tag="U1396_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HEM5341629.1"
                     /translation="MDKKEIFDALDDFSQNLLTTLAEVDAIKKHLQGVIDENTTLRLE
                     NSKLRERLEKEDKTGHKSSNFGKENLENIYEDGFHICTFSYGQRRDNDEPCMFCVELL
                     NRD"
     gene            4988..5851
                     /gene="rsmI"
                     /locus_tag="U1396_000412"
     CDS             4988..5851
                     /gene="rsmI"
                     /locus_tag="U1396_000412"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEM5341630.1"
                     /translation="MKVQKSFKGQTSFGTLYLVPTPIGNLQDMTFRAVQILKEVDIIA
                     AEDTRNTGLLLKHFEVETKQISFHEHNAHEKIPVLIDWLKSGQSIAQVSDAGLPSISD
                     PGHDLVGAAIAEDIPVVALPGASAGITALIASGLAPQPHIFYGFLPRKSGQQKEFFQE
                     KKTYPETQIFYESPYRVADTLENMLTVYGDRQVTVVRELTKLYEEYQRGSISELLEYL
                     EENPLKGECLIIVEGAGEEVYPSADEVDLKAEVEREIASGIKPNQAIKEVAKRYQLKK
                     QEVYDIYHGLG"
     gene            6321..7412
                     /gene="serC"
                     /locus_tag="U1396_000413"
     CDS             6321..7412
                     /gene="serC"
                     /locus_tag="U1396_000413"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEM5341631.1"
                     /translation="MTIYNFSAGPAVLPKPVLERAQAEFLDYNGSGMSVLEMSHRSKD
                     FDDIIKGAEATLRELMAIPDNYKVIFLQGGASLEFTMIPLNFAQGKKAYYLVGGSWGK
                     KAYTEAVKLSKTIAFEPILLGSTEDITYAELPTFDKNDIDPTAAYVHLTTNNTIEGTT
                     VYGIPDTNGVPVIADMSSNILAARYNVEDFAMIYAGAQKNIGPAGVTVVIVREDFLND
                     QPMLSSMLDYRIQAENDSLYNTPPAYSIYISKLVFEWVKEIGGVDEMEKINREKSGLL
                     YDYIDQSNFYTNPVRKKEERSVANIPFVSPSEGLDAKFVKEATTAGFKNIKGHRSVGG
                     MRASLYNAFPHQGVVELIEFMKKFAAENA"
     gene            7412..7969
                     /locus_tag="U1396_000414"
     CDS             7412..7969
                     /locus_tag="U1396_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341632.1"
                     /translation="MEIRLAHPNEMEAIVDILEDARAFLATSGINQWQGEYPNKENIF
                     DDILSGRGYVGIVDGKVAAYAAVHRGQEAEYEAIYEGKWQHNHPVYTTFHRIAAADEF
                     RGQGIIQTFLQGLIEGQKGPDFRCDTHEQNKTMQHILKKLGYVYCGKVPIDGERLAYQ
                     KIKQKSERSLYQEISEDDRWLLGNN"
     gene            8343..9524
                     /locus_tag="U1396_000415"
     CDS             8343..9524
                     /locus_tag="U1396_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEM5341633.1"
                     /translation="MVFSVRTFNNINQIGLKELGNKFQIDGDHAANPDAFIIRSENLH
                     GFDFPENLKAIARAGAGTNNIPIEEATEKGIVVFNTPGANANAVKEAVIASILLSARD
                     YIGATAWANTLSGDDVPKQVEAGKKQFAGTEISGKTLGVIGLGAIGARIANDARRLGM
                     NVLGYDPYVSVETAWTISSHVKRVDDLKEIFTNADYITVHVPLTDKTRGLFNADSFGQ
                     MRKGTTLINFARGELVDNADLFEAIEAGVIKNYITDFGTEEVLNKDNIIVFPHVGGST
                     EEAELNCAIAAGQTIRRFMETGEIINSVNFPNVKQFLDAPYRITLINKNIPNMVATIT
                     TAVSELGINIDNIINKSKGDYAYTLLDLDEADKVKIEQLVAKFEATDAIVKVRVIQNK
                     N"
     gene            9527..10033
                     /locus_tag="U1396_000416"
     CDS             9527..10033
                     /locus_tag="U1396_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM5341634.1"
                     /translation="MLYKQVYHSPLGPMSLIASDKGLRGAWFEGQKYFERGLNEKAIL
                     ASHPILDQTVRLLDQYFSGVQVDFSNLPLEAVGTNFQEHVWQLLKMIPIGQTTTYGQL
                     AQQLGLRSGQAVGGAVGRNPYSIIVPCHRVLNQKGQLTGYAGGLDKKIWLLRHENPEF
                     EVKDDFIL"
     gene            10017..10370
                     /locus_tag="U1396_000417"
     CDS             10017..10370
                     /locus_tag="U1396_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEM5341635.1"
                     /translation="MILFYEYPKCSTCRAAKAELKSLGLEFEAIDIKSTPPSAEELKA
                     WMEATGLELKKYFNTSGNSYRELGLKDKFDSLSLEQALNLLANDGMLIKRPLLIQDGK
                     ILQIGYRTKYENLGL"
     gene            complement(10387..11286)
                     /locus_tag="U1396_000418"
     CDS             complement(10387..11286)
                     /locus_tag="U1396_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM5341636.1"
                     /translation="MDHKIIERKSLTVSSVMNGLSGLAGIAVYIMTDLNALLLDGAFS
                     LIAFISSLVAVYISKNSHRKTETFPQGLYFLEPLYAIMKSLATLLLLVFAVLETSATA
                     FAYFVHGIGHQMTTGPVLPYTITMFFVCMGLYLYNRHMSTKVNHLSTIILAEAKGNLV
                     DGLISGAIGIAILLLYLVPINSWFGFLHYTGDFFLTLALAIISFKEPWNLLVASFKEL
                     ANGTIHFPEIHDSIYQLLEPYLKEDSNDVEIHIFKQGMKIRVKINLHNIRHEIIQKLL
                     EDKPQMLYLLKKHHEYISIEYAL"
     gene            complement(11586..12413)
                     /gene="xth"
                     /locus_tag="U1396_000419"
     CDS             complement(11586..12413)
                     /gene="xth"
                     /locus_tag="U1396_000419"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEM5341637.1"
                     /translation="MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQE
                     TKLSDKGPTKKHLEILESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLSPTITFPEI
                     GAPTTMDSEGRIITLEFDDFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHK
                     PVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQGFTNLLAKGFTDTFRHLHGDVLN
                     AYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVSKSDMIDSGARQDHTPIVMEISF"
     gene            12569..14230
                     /locus_tag="U1396_000420"
     CDS             12569..14230
                     /locus_tag="U1396_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341638.1"
                     /translation="MKRKLFVFAWLALVLEMLIYYWYQLPALNILSVDFWIFFLQSVG
                     LVWLILSMFSSKGAFQKVTKISGRQRQVDTYQIKTSQLPAYLKWLGRIWVLVVLGLLG
                     LGLINSRVFRAKDYAAVISVKDADFKADFPETDISKLALLDRASAEKIGDTYLGTIDK
                     VSQFGISDDYRQITIGQQPFRVSPLEYKNFWKWLSNHQDGIGYYVKVNQTTGKAELAK
                     LSKAMHYSDSEFLLNDTLRHLRLQYPTTIFGKPSFEVDDQGNPYYIATIYEPKFGLSS
                     NDPIGAIVLDAVTGESKKYSLEDIPEWVDRVYSANNVISRVDDHYTYQNGFWNTIFSQ
                     TGVKNTTDSYNYISIGSDIYLYTGITSATADSSNLGFILVNMRTREITNYKLASATET
                     AAQESAEGEVQEKGYKATAPSLVKLADTAYYLVSLKDDAGLVKSYALVDAEDYQQVTV
                     NNDIALLISQVTGTDASSLSGLTVTENGEVGEQTEVISGKVEALASQIIGGATIYYIE
                     SEGKIYKVKATEDSTDRLPFIKVGDHFSGQLDKKNYLKNFKVNPE"
     gene            14390..15778
                     /locus_tag="U1396_000421"
     CDS             14390..15778
                     /locus_tag="U1396_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM5341639.1"
                     /translation="MSLFRKKQAVGRHSQMRRHLGLVDLIFLGIGSMVGTGIFTVTGL
                     AAAQYAGPALIISIVIAAISVGLTALFYAEFASRIPTNGGAYGYLYSVFGEFPAWIAG
                     WLTIMEFLTAVSSVASGWGAYLKGLLANFGIAMPTALNGTFNPAAGTYVDLLPVLVLI
                     FVVGVVLLNSKAALRFNSALVVLKFSALALFILVGLFFIKPENWSNFSPFGFGAIYGG
                     QAGIMAGASLMFFAFLGFESISLAIDEVKKPEKNVPKGIVLSLSIVTILYIVVTLVLT
                     GMVHYTKLNVADAVAFALREVGLDWAASYISIVAILTLITVCISMTYALSRMVYSISR
                     DGLLPKSLSRLTQTSKVPKNATILVGIFAAICAGIFPLASIASFLNICTLAYLIMLAL
                     GIIRLRQVEGLPKDGQFKTPLVPLLPILSIIICLSFMFQYSLDTWLAFGVSVVIGILI
                     YFCYGYRHSEAK"
     gene            15901..16782
                     /locus_tag="U1396_000422"
     CDS             15901..16782
                     /locus_tag="U1396_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5341640.1"
                     /translation="MSNSDIRAKATVIREQTDGMITLFLAPVLISFLSGVAEFGLKQI
                     WGQTGTFSWGTTIVKDGVTWTHNFISVGPSIIFDFIAQCLIVTACFQLIRLVRKQRTK
                     VNFTECFTLLDGKNFLPVFSTTLLKMLVLYLASFPAALGMILIGLAFYSTIVIFGAPI
                     DYQPDFSAFFSSSYFQTGLILVCVGITCSLFVGYGLSQVSFLLYDYLENNTYSSPFKL
                     FSQSWQLMKGNKWRRFLLDLSFIGWFIGVLLTFGFLGLYVYPYYWTCQTIFYEDLKAK
                     NPLMFSTYKSVISSTVA"
     gene            16975..17811
                     /locus_tag="U1396_000423"
     CDS             16975..17811
                     /locus_tag="U1396_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5341641.1"
                     /translation="MMTSDIVSRAMMTRERTRGTTLLFLPSILLSIVYAVPVTIFRLL
                     TFLELRQNSAVVEGRLVSSIRLTYLGELGFALLLQLFIGLSCFHLLELLRGDRQEFSL
                     KDSFSFLKTEWKKPICTTFLYYYLLLFMAGLPANLGAALFIKGFAMSSLMVLSPGAMA
                     ELAVHQPSQLMKIGAPIFLLGMIIYLFVYYTYSQVVFVLYDHLDNASYTGPLAVFRES
                     RFLMKGNYWQRIWLDLSFLGWFIGEVFTLHLLSFFVTPYYHLSRTIFYEKLKKQRLSA
                     VE"
     gene            complement(17829..18704)
                     /locus_tag="U1396_000424"
     CDS             complement(17829..18704)
                     /locus_tag="U1396_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5341642.1"
                     /translation="MKTEFINEKAQSAFNLNIITSPIVAIILLLVGDSLGAVIFTPIS
                     FLLPFSETLSVSFELFAFAFISLMVILWARYIEKSPWVGLGFTKKGAGKDFLLGWGIG
                     AAMLTTCTLIMWGLGAIEFTSIQFSTKLVGEFIILILAWSIQGTTEEILTRGWMFSSL
                     SAKHNIPIGIIVSSLFFTFLHLGNNAISLIPILDLTLFAVLACLIMLKTGNIWVIGGL
                     HAAWNCFQGNVFAFPVSGTDAGQAFVQIGITGPEWLSGGKFGLEGSIISLLVQGIMIS
                     WLVYDLYFKPKTSSL"
     gene            18827..19438
                     /locus_tag="U1396_000425"
     CDS             18827..19438
                     /locus_tag="U1396_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3885 domain-containing protein"
                     /protein_id="HEM5341643.1"
                     /translation="MELNQWLKSFQLKDNRLVGPFFYGTLLALRFEIGPADEAEELSR
                     AIYLERAYARAVELFEQASSEYDYVLLSLLRQEDRDIDTYLWHFSSKFNFDKVPEPEL
                     IEVEDWTGDVLVFECYLFPVTDQDLKALLREIVKADHGGFHYLSASVIFLSSKDKVLY
                     HCYDDRGVDIAVVDDDKRRQLFTDCHDLLFDYDMEEMVRRMDF"
     gene            19639..22399
                     /locus_tag="U1396_000426"
                     /pseudo
     CDS             19639..22399
                     /locus_tag="U1396_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006532944.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
     gene            22396..24318
                     /locus_tag="U1396_000427"
     CDS             22396..24318
                     /locus_tag="U1396_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM5341644.1"
                     /translation="MSQLFEVTYGQKKTSVNTNELGMREMQARVCEKRNSPYLLVKAP
                     PASGKSRALMFVALDKLKRQGLKKAIVAVPEKSIGKSFRSTKLSDFGYYWDWIVKDEN
                     NLTTSGTAKSKVEKFINFIQSTDETDDVLIVTHATLRFASEQLDASDFDACLLAIDEF
                     HHVSQDDNSVLGNALREVLQKSTAHIFAMTGSYFRGDSVPILDHADEARFERVTYTYY
                     EQLEGYQYLKSFVMNYKFYRGRYTDAFPDLLPEFIDKKTIIHIPNVNSGESSKDKYGE
                     VDEILDCLGDYLHKDEHGIIHLRSKTGKILKIADLVTEDGRDLVSNYLAKMDSEDELD
                     MIIALGMAKEGFDWPFAEYALTIGYRSSLTEIVQIIGRVTRDSSNKTKAQFTNLIAEP
                     DAEDEEVQFSVNNIMKAITASLLMENVLSPSFKFKRKENDGQKANGAEIFIKGLAKPS
                     TERTQKIIEQDITDLKASVLQDDVVQAAISAGAESKVITKQLIPRVIATRYPDLTQTE
                     VEEVRQHLVADLTLSNAKKDSENNKLLKMADKFINIDDLSIDLIDSVNPFQGAYEVLS
                     RDVDSRTLSLIARVFDAKKVEFTTDELRMLYPQIKAFQAEHGHSPRRNSSDLEEERLY
                     FALAKLDELRRERDNQ"
     gene            24315..24530
                     /locus_tag="U1396_000428"
                     /pseudo
     CDS             24315..24530
                     /locus_tag="U1396_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004233099.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            24595..25473
                     /locus_tag="U1396_000429"
     CDS             24595..25473
                     /locus_tag="U1396_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006532941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM5341645.1"
                     /translation="MMDDLDDILNDDSLFENFETDRTLFSTKRYQGTVRARSKSSSRT
                     RVQTGFDTYRKLFTQVHADIACGKRQIKSIEETSQGNRISRKNPIKQGNFYVDNGVML
                     YVVKIYDPQTNVEVGQSTERKYKVHIVYENGTENHVWLLSLISSLYDKKRSGRLVTEP
                     LDTISMLGEEAAKYHTTGYIYVVKYAGTDNRFLELDNLYKIGVATDIKKRLSNSQNEA
                     TYLYAPVHLVASYEIQNVSASKLEKFLHDAFSDKRVQLETASPTGKKVSVTEWFVVEL
                     EQIEQKIYELFKQLNL"
     gene            25798..26544
                     /locus_tag="U1396_000430"
     CDS             25798..26544
                     /locus_tag="U1396_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341646.1"
                     /translation="MPYRKLTSRDRSFIKGQTDRLLNQMNSNAAYLGTVQTYEAAKAR
                     ANQAYLAMELEDDPEKKVRLAKLVENYTAQAQAILDEWEEKNSRTEKTTRNVKLILWL
                     TVLFTLSFVFPVNIILAILFSVWFYRNYLRSSRTDQVIKAANSQSLTEEERFEDWLTE
                     KIVVLNKDKRQWTEGIIAKYDSLDEIAAGIGEMDEIDKVAGEKLLRRYQDILADIEKL
                     PDSEQKTYYLDFHQEIIADLEDLFQQLHFG"
     gene            26702..26951
                     /gene="tnpA"
                     /locus_tag="U1396_000431"
                     /pseudo
     CDS             26702..26951
                     /gene="tnpA"
                     /locus_tag="U1396_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT         8218 a         4824 c         5976 g         7933 t
ORIGIN      
        1 tgtggccctc cttgttttat tggcaatcgg ttttgtcatg agtttctggt atatcttatt
       61 gcctactggg ctcttaattg gctattttta caagagagag gctatccagc gttttttgaa
      121 tagagattct ataaaacgct cgcaggtatt agcgctatct attcgttcgg gctatgaaaa
      181 gcatcaagag ctctttgtgg aaaagggtga ggataaggtt gtgttacagt tgagaaatag
      241 actgttagga caattatttg aattagatca gctctatcaa aaagttggaa aatatctgaa
      301 tggatatgaa agtaaagaag ttgtagatac cttgcaacta aaatatcatt taaaactgcc
      361 agaagctaaa acagaaaaaa atactgacac acaggtttct actggtggta atgctgtgat
      421 ggatgaacaa ggcatgatag cggatttagc tcctgaaatt ctagaaacct attgtaatat
      481 tcaaagagac aatcttgtta ttcttgaaaa gctggaaaag gcgacagata agagggaaga
      541 attgacagct atccatgagg ccaatatgaa tcggtttaac gatattttac aaggttattt
      601 gaaaatcaaa aaatcaccga aagattattt taacgcagaa gaacgattgg tgcaggcaaa
      661 atcagccatg gaaatgtttg ataaggattt ggatgatacc atcaaacaat ttaacgaagc
      721 gggtatgaaa gattttgaag tcagtctgcg tatgatgaaa agagaagagg aatagagaag
      781 atgtcaggat ttaatttcga tattgatcag attgctaata atagtttatc aaccaaagat
      841 aagacaacag agcttattca agcgactccg actggagata attcaaaagt gtctttcttg
      901 gcacagttga caccggaaca acaaacaggt attcgtgcta aggctcccca attggtggat
      961 aatttcttag ctaatcaaaa tgccctcttg gattttggta aggaagcggt agaagaagtc
     1021 aatgccacgg tcaatcacat tttgtcagaa cagaagaaga ttgaaattcc acaggtggat
     1081 gagcttttgg ccaataccaa ccgtgaattg aatggttttg tggctaagta taaggacatt
     1141 tccacaactg ctgaattaga aaagaaacca ggtttcttcc aacgcctgtt caagcagacc
     1201 aaaaatgatt tgcaggaatt ttatttcgac tcgcagacca ttgaaaagaa aatggatagc
     1261 atggcagcca gtgtggtcaa gcaggaagag gtgttggcgc gcaatattgt ttctgcagag
     1321 cttttgattg aaaataatac caagtctatc gagaatttgg tgggggtcat cgcctttatt
     1381 gaagcgactg gtcaggaagc ggcagagcgt gcaaaattgg cacaagaaaa cctcgcaact
     1441 ttagtaccga ctacagtcga ttatcaagta gcttctgaga agttggcacg tgtaacagag
     1501 gttgctaata tcctcgaaca acaacattct gagtatatga gtcgcttgta tgttgcgtgg
     1561 acaacgacac cgcagatgcg taatctggtc aaggtttctt cggatatgaa acagcgcctt
     1621 gggatgttac gtcgcaatac tattccaaca atgaaattgt ccattgcaca gttgggcatc
     1681 ttacaacaat ctatcaagtc tagccagacg gcagatgcga ttgtcaatgc taataatgct
     1741 gcccttcaaa tgcttgcgga tacatcaaaa gaagccatcc cgatgatgga acgcacagct
     1801 cagaatccga ccctttcagt agcatctgtt accaaattgg cagaaagttt ggttgcccaa
     1861 aataatggca ttattgcagc tatagatgaa gggcgtcaga aacgtcgtga gttggaggca
     1921 gctattgtac ggtcagcaga gactatcaac gattctgtta agctacgcga tcaaaaaatc
     1981 attgctgctt tgctggagca aggcaaagaa gcacagtctg aggcagagca accacttgaa
     2041 accaatcaat aatataaaac ctgcagttca gcgaaactgc aggtttgttt aatggcgttc
     2101 tattggtttt ttatctcgat ctaaagtaaa tccctcaccg agtacttcat gtgcgtctgt
     2161 aatggtgata aatgcgtggg ggtcaatacg atgaataagc tccttcatct cttggagttg
     2221 gctcttatat atgaccgagt aaatcatgtt gacatcggct ttgctgtaga aaccttgtgc
     2281 tttgataaag gtgacaccac gctcgatttc acaatcaata gcctgagcca attggtcaga
     2341 tttttgagaa acaatcataa cccccttgct accatatccg ccctcagtga caaaatcaat
     2401 aaccttggaa gcaatagcaa ccatcattaa agtatataga actgttcgga ggtctttaaa
     2461 aacaataaca atcagagtta ggatgaggat gtcaactgca agaatgattt gtccaatgga
     2521 gtaaggtagg aatttatgac ctatacgagc aatgatatcg cttcccccag tcgttccgcc
     2581 agcacggaag atggttccta atcctagtcc cataagaatc ccacccagga tactaacgag
     2641 tatcaaatct tgttgtagat tgattgaaaa atggattttt tcaaaaatgg ccaaccaaaa
     2701 ggtaacgcta aaggttccta agatactgag atagagagtc ttctttccga gtattttcca
     2761 cccgaggatg aacaatggaa tattaatcac aatgttcatt atccaaggtt gaatatggaa
     2821 aaggtagtaa ataatcagcg tcaatccagt tgcgccaccc tcgaacagac gattgggcat
     2881 gattaaataa tttagcccaa aggcaaatag ccctgcacca agcaaaataa gtaaaatatt
     2941 tttcaaacga accataagca tctccgaata tgtgtatata tcaattttaa aagattttct
     3001 ccttaaaaac aagtcaattt tcaagtgatt ttttgactaa tttttggtaa aatggaatga
     3061 atatctaaga accagtcttc acaagtgaag tgctgaactg tgcatactgg tactaagagc
     3121 gagggaaaga tgagaaacgg tttttttatt acatttgaag gtccagatgg ggcagggaaa
     3181 acgacggtat tgcaacagtt attgccagcc ttgcaggaat tggggccaga agtagtcaca
     3241 actagagagc caggtggggt ggctattgca gaagaaattc gcaatattat tctgaaccct
     3301 gcaaatactg aaatggatga taagacggag ctgttattgt tcattgcagc acgacgtcag
     3361 catttgaaag agaagattct tccacccttg gcacagggga aattgctctt gattgatcgt
     3421 tttatcgatt cctctattgc ctatcaagga tttggacggg ggttggatat aggtgacatt
     3481 cattggctca accagtttgc aacagatggt ttaaagccag atttaaccct ctattttgat
     3541 attgatacag aagaggggct ggctcgaatt gcccgcaatg ctgaccgtga tgtggatcgc
     3601 ttggatatgg aaaaagcaga tatgcataga cgggtgcgtc aaggctatct taatatttta
     3661 gagcaggaac cagagcggtt tgtaaagatt gatgccagtc agccactaga ggctgttgtt
     3721 gcagatgctc tggcggtcat taagaaacgg tttgcagaaa gaacatgaag attgaagaac
     3781 ttagaaactt acaacccaat gtatttcaac gttttgtgac aattttagag cagagacgtt
     3841 tggtgcatgc ctatctattt tcaggtgact ttgctagttt tgatatggca atttttctca
     3901 gtcaatcgtt attttgtcag gagaaagaag gcgtccttcc ttgtcagaag tgtcggtctt
     3961 gtcgtctaat tgaagcaaat gagttttcag atcttactgt tattgcaccg cagggaaatg
     4021 ttatcaaaac agatacgata cgtgaattag ttaagaattt ttcacaatct ggatttgaat
     4081 ccaataagca ggttttcatt attcgtgatg ctgagaaaat gcatgctaac gcagccaact
     4141 ctttgctaaa agtgattgaa gaacctcagt cagccattca catcttatta ttgaccaatc
     4201 aggaagaagc tgtccttcct actatcaaga gtcggacaca gattataggt tttcctaaaa
     4261 atattccggc catggagcga atgttagaag aggagggctt gttaaaaaca caagcgaatc
     4321 tcttagctca actggtttca agtcaagaag aagcgaaaaa gttagcagaa aataaaaact
     4381 ttttagattt gatgggacag acaaagaaat ttacagactt gctcttggtg gagcctacac
     4441 gtgcttattt gcaagttgga atcctagtgt ctttagctgt ggaaaaagct gagcagggac
     4501 gtttgtttga ccttctgagt ctgatattat ctgagaaaat gatggaatcg gcaaacgtac
     4561 gtgaaaaaat ggatgctgtt cttaaggcta agaagatgtg gcaggcaaac gtaagtctac
     4621 aaaatagtct agagtatata actctgtaaa ataaaagaaa gggagataat ggataaaaaa
     4681 gaaatttttg atgccctaga tgatttttcg cagaatcttc taaccacgtt ggcagaagtg
     4741 gatgctatca aaaagcattt acagggagtt attgatgaaa atacgaccct ccgcttggaa
     4801 aattccaagt tgcgcgaacg tttggaaaaa gaagataaga caggccataa atcttccaac
     4861 tttggtaagg agaatttgga gaatatttac gaagatggtt tccatatttg taccttctct
     4921 tatggtcaac gtagggataa tgatgaacct tgtatgttct gtgtagaatt attgaatcga
     4981 gattaggatg aaagtacaaa aatcatttaa gggacagacg agttttggga ctttatatct
     5041 ggtgccaacg cctattggaa acttacagga tatgacattc cgagctgttc agattttgaa
     5101 agaagtggat ataattgcag cggaagatac aagaaataca ggactcctac tcaaacattt
     5161 tgaagtagaa accaagcaaa tatcctttca tgaacacaat gcccatgaaa aaattccagt
     5221 tttgattgat tggctcaaat ctggtcagtc cattgcgcaa gtttctgatg caggcctgcc
     5281 ttccatttcg gatcctggtc atgacctggt aggggcagcg attgcggaag atattcctgt
     5341 tgtagcactt ccaggagcat cggcaggaat tacagccttg attgcatctg gtttggcacc
     5401 ccagccacat attttttatg gatttttacc gagaaaatcg gggcagcaaa aagaattttt
     5461 ccaagaaaaa aagacctatc ctgagacgca aattttctat gaatctccat atcgtgtggc
     5521 agatacctta gaaaatatgt tgacagttta tggtgatcgt caggtaacag ttgttcgaga
     5581 attgaccaag ttatacgaag aataccagag aggaagcatt tccgaattac tagagtattt
     5641 ggaagaaaat ccacttaagg gagaatgctt gattattgtc gagggtgctg gtgaggaagt
     5701 ctatccttct gctgacgaag tagacttgaa ggctgaggta gaaagggaaa ttgcaagtgg
     5761 cataaaacct aatcaggcta tcaaagaagt ggccaaacgc taccaactca aaaaacaaga
     5821 agtatacgat atatatcatg gactaggtta agacctagtt tttttgtatg tttatgcaag
     5881 cttatactct tcgaaaatca aaattatccg ttgtcaagag ccttgatgag tgaaaagctc
     5941 cagtggatct tttcagtctg ttaccttgaa atgagaaagg aacagagttc tatcttcggc
     6001 ttaatgacgc gaacacagtt ctctatactt ccagccttca actatatccc agctaagcta
     6061 cttttgattt tcattgagta ttaatatgca gatagcaatt ggcgacactc cccaaacagt
     6121 caaatctggt cataaaattt tcattgaaac ctgatgaatc cctgtgaggc aagcgcctcg
     6181 tttatggcta aaagtaagag gttctttaga aagtagaata aatataagaa atccgaatgt
     6241 ttttacaaaa taatcatatt ttatggaatt gtctgaatat ttgtgatata atgaacagac
     6301 taacttaatg gagggatttt atgacaatct acaacttctc tgcaggtcct gcagtattgc
     6361 caaaaccagt acttgaacgc gcccaagctg aattcttgga ctacaatggt tcgggaatga
     6421 gcgttttgga gatgtcgcat cgctccaagg acttcgatga tattattaaa ggtgctgagg
     6481 caacgcttcg tgaattgatg gccattccag ataattacaa ggttattttc ttgcaaggtg
     6541 gagcttcttt ggaattcaca atgattcctc tcaacttcgc tcaaggtaag aaagcctact
     6601 atcttgtagg tggctcatgg ggtaaaaaag cctatactga ggctgtgaag ctgtctaaaa
     6661 caattgcctt tgaaccaatt ttgcttggat caacggaaga tattacctat gcagaattgc
     6721 caaccttcga taaaaatgat attgatccaa ctgctgctta cgtgcatttg acaacaaata
     6781 acactattga aggaacaaca gtttatggta ttcctgacac caatggtgtg ccagtcattg
     6841 ccgacatgtc ttcaaacatc ttagcagctc gctataatgt tgaagatttt gccatgattt
     6901 atgctggcgc tcagaaaaat attggtcctg ctggtgtgac ggtggtgatt gttcgtgagg
     6961 acttcctcaa tgatcaacca atgctttcaa gcatgttgga ctaccgtatt caagcagaaa
     7021 atgactctct ttataatacg ccaccagctt attctatcta tatttctaaa ctcgtctttg
     7081 aatgggtaaa agaaattggt ggtgttgatg agatggaaaa aatcaaccgt gaaaaatctg
     7141 gtttgcttta tgactatatc gaccagtcta atttctatac aaaccctgtt cgcaaaaaag
     7201 aagagcgttc agtagcgaac attccttttg tctcaccaag tgaaggatta gatgccaagt
     7261 ttgtcaaaga agcaacaaca gctggtttta aaaacatcaa aggtcaccgt tcagtaggtg
     7321 ggatgcgggc gtcgctctat aatgctttcc cacatcaagg tgtggttgaa ttgattgaat
     7381 tcatgaaaaa atttgcagcg gagaatgctt aatggaaatt agattagcac atccaaatga
     7441 gatggaggct attgtcgata ttcttgaaga tgctcgtgca tttctagcaa cctctggtat
     7501 caatcaatgg cagggagagt atcctaataa agagaatatc tttgatgaca ttctttctgg
     7561 cagaggttac gttggtatag ttgacggtaa ggtggcagcc tatgccgccg ttcatcgtgg
     7621 tcaagaagca gaatatgagg ccatatatga aggaaaatgg cagcacaatc atcctgtata
     7681 tacaacattt catagaattg cagcagctga cgaatttcgt ggtcaaggaa tcatacaaac
     7741 ttttttgcaa ggtttaattg aaggtcaaaa aggaccggat ttccgctgtg atacccacga
     7801 gcagaataag acaatgcagc acattctaaa aaaattaggc tatgtctatt gtggtaaagt
     7861 cccaatagat ggagaacgtc tagcctatca aaaaatcaag caaaagagcg agcggagtct
     7921 ttaccaggaa atcagtgaag acgaccgttg gttactcgga aataattaat gaaataaaga
     7981 aagaaaagga ccgggaaaaa gcttcatatc acttctcaag gttcgagtca acatctcagc
     8041 acagtggttg attgggttta acagtccagt ggactgttaa aggttggaga taagatttgc
     8101 gaagcaaatc tcagcagttc gtattttata ctccaaatct gacctctacg actgatgcga
     8161 acagagttca ccttatctcc aacctcaaac tgtctcccag acagtttgag ctgtgcgggg
     8221 gtgggagtga aacagtctgg gaatagactg tttcagctca acaaatagaa ataaagactt
     8281 gttgacgaac tcttctagga gtggttgagt tctttcccac tccccttttt aggtaaaaat
     8341 aaatggtatt tagcgtacgt acttttaaca atatcaatca aattggtctt aaggaattag
     8401 gcaataaatt ccagattgac ggagatcatg cagcaaatcc agatgccttt attattcgat
     8461 ctgaaaattt gcatggattt gattttcctg aaaatctaaa agctattgcc cgtgctggtg
     8521 cagggactaa caatattcca atcgaagagg caacagagaa aggtattgtt gtctttaaca
     8581 ctccaggtgc caatgccaat gccgtaaaag aggcagtcat tgcttccatt cttttgtcag
     8641 cacgtgacta tatcggagcg actgcatggg caaatacatt gtcaggagat gatgtaccta
     8701 agcaggttga agcaggtaag aagcagtttg ctgggacaga aatttcaggt aagactcttg
     8761 gtgttatcgg acttggtgct atcggtgcgc gtattgccaa cgatgcccgc cgtttgggga
     8821 tgaatgttct cggttacgac ccttatgtat cagtagaaac tgcatggacc atttcaagcc
     8881 atgtcaaacg tgtggatgac ttgaaagaaa tctttaccaa tgcggattac attactgttc
     8941 atgttccttt gacagataag acacgaggac tcttcaatgc ggatagcttt ggtcaaatga
     9001 gaaaaggaac aaccttgata aactttgccc gaggtgaatt ggttgataat gctgatttgt
     9061 ttgaagcaat tgaggcagga gttatcaaga actatatcac ggattttggg acagaagaag
     9121 tgctcaacaa ggacaacatt atcgtcttcc cgcacgttgg tgggtcaaca gaggaagcag
     9181 agctcaactg tgccattgct gctggtcaga ccattcgtcg ttttatggag acgggtgaaa
     9241 ttatcaactc agttaacttc ccaaatgtga aacaattcct agatgcaccg tatcgtatta
     9301 ccttgattaa taagaatatt cctaatatgg tggcaacgat cacaacggct gtatctgagt
     9361 tgggaatcaa tatcgataat atcatcaata agtctaaagg tgactatgcc tatactttac
     9421 ttgatttgga tgaagcggat aaagtgaaaa ttgagcagtt ggttgctaaa tttgaagcaa
     9481 cggatgcaat tgtcaaagtg cgtgtcattc agaataaaaa ctaatcatgc tgtataaaca
     9541 agtctatcac agtccacttg gccccatgtc attaattgct agtgataagg gattgagagg
     9601 ggcctggttt gagggacaaa aatattttga acgaggcttg aatgagaaag ctattttagc
     9661 ctcccatccc attttagacc agacagttcg attgcttgac cagtattttt caggggttca
     9721 ggtggacttt tcaaaccttc cattagaagc tgtgggaaca aatttccaag agcatgtctg
     9781 gcaattattg aagatgattc cgattggtca gacgactacc tatggacaac tggctcagca
     9841 actgggcctt cgttctggtc aggcagtagg aggagcagtt gggcgtaatc cttattcgat
     9901 tattgttcct tgtcaccgag ttctcaatca gaaaggacag ttgacaggtt atgcaggtgg
     9961 actggataag aaaatctggc tcttgcgaca tgagaatcca gaatttgagg tgaaagatga
    10021 ttttatttta tgagtatcca aaatgttcga cttgccgagc agcaaaggcg gagctgaaga
    10081 gtttgggatt ggaatttgaa gctattgaca ttaagtcaac accgcctagt gctgaagagc
    10141 taaaagcttg gatggaggcg acaggactag aattgaaaaa gtattttaat acttctggga
    10201 atagctatcg tgaactaggt ttgaaagata agtttgatag tcttagcttg gagcaggcac
    10261 ttaatcttct agctaatgat ggtatgctga ttaagcgtcc cctactaatt caggatggta
    10321 aaatcttaca gattggctat cgaacaaaat acgaaaatct cggtttataa gccgagattt
    10381 tgtttattat agcgcatatt ctattgaaat atattcatga tgttttttca aaagatagag
    10441 catctgaggc ttatcttcta agagtttttg gataatttcg tgacggatat tgtggagatt
    10501 gattttaacg cgaatcttca tgccttgttt gaaaatatgg atttcgacat cattgctatc
    10561 ttcctttaag taaggctcca atagctgata gatagaatca tgtatctcag ggaaatggat
    10621 tgttccgttg gcaagttcct tgaaagatgc cactaataag ttccaaggtt ccttaaatga
    10681 aatgattgct agtgctagtg tcaaaaagaa gtcaccagta taatgcagga agccgaacca
    10741 agagttgata ggaacaagat agagcagaag aattgcaatt ccaattgcac ctgaaatgag
    10801 tccgtctaca aggttgcctt ttgcttctgc taatatgata gtagacagat gattgacttt
    10861 ggtactcata tggcggttgt ataggtaaag ccccatacag acaaaaaaca tggttatggt
    10921 ataagggaga acgggacctg tagtcatttg atgaccgatt ccatgaacaa agtaagcaaa
    10981 ggctgtcgcg ctagtttcaa gtacagcaaa tacaaggagt agtagagttg cgagagattt
    11041 catgatagcg tagagaggtt ctagaaaata cagtccttga ggaaaagtct cggttttccg
    11101 atggctattt tttgatatgt aaactgcaac taaggacgaa ataaatgcta ttagagaaaa
    11161 ggctccgtct aggaggaggg cgtttaggtc agtcatgata taaacggcaa tacctgctag
    11221 tccagataaa ccgttcataa cagaggaaac agttagagat ttgcgttcga taattttgtg
    11281 gtccataatc cctcctttta atgtatatct atatatttat tttaccacaa aatgacaccg
    11341 ttttcaaatt gagcggatta aaacaaggta gagaggtaga gtgataagaa ataaaggctc
    11401 aaaacccttg caatagacct acgggtttta agcctttaat atctgttatc tgataattga
    11461 aatcaggtta tactcttcga aaatcaaaat cagacgttgt tgacttgatt tgatgaactt
    11521 cagttctatc tgcatctgcg tcgcctagtc tgattttgat tttcattgag tattaatatc
    11581 cactgttaga atgaaatctc catcacaatt ggtgtatggt cctgacgagc accggaatca
    11641 atcatatctg acttacttac tttgtcggcg atgcggtcgc tgacaagcca gtaatcaatt
    11701 ctccagcctg tgttgttgat tttactggtg cggctacgtt gtgcccacca agtataggcg
    11761 ttgagaacat caccgtgcaa gtggcggaag gtatctgtaa aaccttttgc tagaagattt
    11821 gtaaaacctt gacgttcttc atctgtaaac cctggagatt gacggttact tgcgggatta
    11881 gcaaggtcaa tttccttgtg agcaacgttg tagtcacctg ttgcaagaac aggtttgtgg
    11941 ctatcaagtt ttgctaagta gtcagcatac tgtacatccc agatttgacg gtcagcaagc
    12001 cgtttcaagc catcaccagc atttggcgta taaacttgtg tgacatagaa gtcatcaaat
    12061 tctagcgtga tgatacgccc ttcagaatcc atggttgttg gagcaccaat ctcagggaag
    12121 gttatggttg gacttagatg gtttttgtag aggaagagtg taccagcata gcctttgcga
    12181 gctggttcta cagatgaacg ccaggtattg gcatatccag ggaagtagct ttccaaaatt
    12241 tctagatgct ttttagtcgg tcccttatct gacaattttg tttcctgaat ggcgataata
    12301 tcagcgtctt ctgtcacaag tgtatcgatg actgcacgtg ataatagggc gcgaggagac
    12361 tctgcagtca atgcagcgtt aagagaatca atattccaag aaatgagttt cataattttc
    12421 cttttctagt ctgttactgt tttacattat accaaaaata aaagttgcag gcgaatatgg
    12481 aaacttgaaa aaaattttat aattcttgta ttataacatt aaaattgtga tacaatagaa
    12541 ctaataaatc tgtgtcaagg aggttattat gaaaagaaaa ttatttgttt ttgcctggtt
    12601 agccctagtt ttggaaatgc taatctacta ctggtaccag ttgcctgctt taaatatttt
    12661 gagtgtggac ttctggatat ttttccttca atctgtcgga ttggtctggc tcatactttc
    12721 catgttcagc tccaaaggtg cttttcaaaa ggtgaccaag atttccggtc gccagagaca
    12781 agtagatacc tatcagatta aaacctcgca actgccagct tacttaaaat ggttgggacg
    12841 aatttgggta ttggttgtcc tgggtttgtt ggggctgggg cttatcaact cacgtgtatt
    12901 tcgtgctaag gattacgctg ctgtcataag cgttaaggat gcggatttta aagcagattt
    12961 tcctgaaaca gacatatcca aattggccct cctagaccgc gcctcggccg aaaaaatcgg
    13021 tgatacttat ctaggtacca ttgacaaggt ctcccagttt ggcatttcgg atgattatcg
    13081 ccagattact atcggtcagc aaccgttccg tgtatcgcct ttggaatata agaatttttg
    13141 gaaatggctg agcaaccatc aagatgggat tggttactac gtgaaggtta atcagacaac
    13201 agggaaggca gaacttgcca agttgagcaa agccatgcac tattcagatt ccgaattttt
    13261 gctgaatgat accttacgtc atcttcgctt gcaatacccg acaactattt ttgggaaacc
    13321 atccttcgaa gtggatgacc aaggaaatcc atattatatt gcaacgattt acgagccaaa
    13381 atttggactt tcatcaaatg atccgattgg tgctattgta ttggatgcag taacagggga
    13441 aagtaagaag tatagtctgg aagatattcc agagtgggta gaccgtgttt attcggcaaa
    13501 caatgttatc agccgtgtag atgaccacta tacttatcaa aatggtttct ggaataccat
    13561 tttcagtcaa actggtgtga aaaatacaac agacagctat aattatattt ctatcggctc
    13621 agatatttat ctctacacag gtatcacctc agcaactgct gattcatcca accttggatt
    13681 tattcttgtc aatatgagaa ctcgtgaaat taccaactac aaattggctt cggcgacgga
    13741 aacagcagcg caagagtccg cagaaggtga agtgcaggaa aaaggctata aagccactgc
    13801 tccaagcctg gttaagttgg cagatacagc ctactattta gtatccttga aagatgatgc
    13861 cggcttggtt aaatcatacg ctcttgttga tgccgaagat tatcaacagg ttactgttaa
    13921 caacgatatt gcgctcttaa tttctcaagt cacaggaacg gatgcttcta gcctttcagg
    13981 attgacggtg actgaaaatg gagaagttgg tgaacagact gaggttatca gtggaaaagt
    14041 agaagcttta gcgagtcaaa taattggcgg tgcgacaatc tactatattg agtctgaggg
    14101 caagatttac aaagtcaaag caacggaaga tagtacagat cgattaccat ttatcaaagt
    14161 aggagatcac tttagcggtc agttagataa gaaaaattat cttaaaaact ttaaggttaa
    14221 tccagaataa tcataagaaa gagtgaggta gaaaagcctt gctcttttgc ttgtcgtcac
    14281 ccatgcgaaa tatttcaact tatggtataa tggggcgttg tggttctttg acaggaatcc
    14341 gtagattatt ctgtcgagta tccatattct tattctgaag gagtattttg tgagtttatt
    14401 tagaaaaaaa caagcagtcg gtcgccatag tcaaatgcgt cggcatttag gcttagttga
    14461 tttgatattt ttaggtatcg gttcgatggt tggaacaggt atctttacgg taactggttt
    14521 ggcagcagcc cagtatgcag ggccagctct gattatctca attgttattg cagcaatttc
    14581 agtcggacta acagccttgt tttacgcaga atttgcctcg cgtataccga ctaacggtgg
    14641 tgcctatggt tatctctact cggtttttgg tgaatttcct gcctggattg ctggctggct
    14701 gacgatcatg gaattcttga ctgctgtatc gagtgttgca tctggttggg gagcttattt
    14761 gaaaggactc ctggctaatt ttggtatcgc tatgccgaca gctttgaatg gaacttttaa
    14821 ccccgctgca ggtacctatg tagacctctt accagttctc gtcttgattt ttgtggtagg
    14881 agtggtcttg cttaattcta aggcagcact tcgtttcaat tcagccttgg tagttttgaa
    14941 attttcagcg ttggctttat ttattttagt agggttattc tttatcaaac cagaaaactg
    15001 gtcgaacttc tctccttttg gttttggtgc catttatggt ggacaggcag gaattatggc
    15061 aggagcgtct ctcatgttct ttgccttcct gggatttgag tctatttcat tagcaattga
    15121 tgaggtgaaa aaacctgaga agaatgtacc aaagggaatc gtgttgtctc tatccattgt
    15181 aacaattctt tatattgtag tgacattagt cttgactggt atggttcact atactaagtt
    15241 gaatgtggca gatgcggtag cctttgcact tcgagaagtt ggattggatt gggcagcgag
    15301 ttatatttct attgttgcaa tcctaacatt gattacagta tgtatttcga tgacctacgc
    15361 cttgtcgaga atggtctatt ccatcagtcg tgatggtttg ctaccgaaat cattgagccg
    15421 attgacacaa acaagcaagg ttcctaaaaa tgcgaccatt cttgtgggga tttttgcagc
    15481 catttgtgca ggtattttcc cactagcaag tattgcttcc ttcctcaata tctgtacctt
    15541 agcttatttg attatgctgg cgttgggtat tattcgtctg cgtcaagtcg aaggtttgcc
    15601 aaaagatgga caatttaaaa cacctcttgt tcccttgtta cctatcctct cgattatcat
    15661 ttgtctttca tttatgttcc agtatagttt agatacttgg ttagcattcg gagtatccgt
    15721 ggttattgga attttgattt acttctgtta tggctatcgt cattcggaag caaaataata
    15781 gatttccctt ctttatttga agggattttt tgtacaattt ttttatagaa ataatggaaa
    15841 acttaaaaat aaaatagtat aatatatata atgatacaaa tatatgaaag gagaaacgca
    15901 atgtctaata gcgatattcg agctaaagca acggttattc gtgaacaaac agatgggatg
    15961 ataaccttgt ttttggcacc tgttttgatt tcttttctgt caggagtggc agaatttggc
    16021 ttgaaacaaa tctgggggca aactggtact ttctcctggg ggacaactat tgtgaaagat
    16081 ggtgttactt ggacgcataa ttttatttct gtgggcccgt caatcatatt tgattttatt
    16141 gcacaatgtt taattgtgac agcttgtttt caactaataa gactggtgag aaagcaaaga
    16201 accaaggtta actttacgga gtgtttcact ttactagatg ggaagaattt tttaccagtt
    16261 tttagtacga cattattgaa aatgctggtc ttgtatttag caagtttccc tgctgctctt
    16321 ggaatgatat tgataggttt agctttctat agtactattg tcatctttgg tgctcctatt
    16381 gattatcagc ctgatttttc agcttttttc agttcgtctt attttcaaac aggattaata
    16441 ctggtatgtg tagggattac ttgtagttta ttcgtaggat atgggctcag tcaggtctct
    16501 tttcttctct atgattattt ggaaaacaat acctattctt caccatttaa actcttcagt
    16561 cagagctggc agttgatgaa ggggaataaa tggcgccgtt tcctcttgga tttatctttt
    16621 atcggctggt ttattggagt tcttttgacg tttgggtttt tgggacttta cgtatatcca
    16681 tactattgga cttgtcagac tatattttat gaagatttga aggccaagaa tccattgatg
    16741 ttttcaacat ataaatcagt tatctcttcc acagtagcct agggagtatg gagataacaa
    16801 attattagga atcccttcgt attttggagg gattttcctg tttttaagag atgttctgga
    16861 aaattaatgg ataaagtttt atactaatag taggatggta aagtagtccg atgttgatgg
    16921 aatatttgcg acgtgacttc ataaataagg agagaaaatt ggaggggaat tgtgatgatg
    16981 acgagtgata tagtatcaag agcgatgatg actcgcgagc ggacaagagg tacaacacta
    17041 ctatttttgc cctccatttt gctatctatt gtttatgctg taccagtaac aatttttcgc
    17101 ctactaacat ttctagagct ccgtcaaaac agtgctgttg tggaagggcg attggtttct
    17161 tcaatcaggt tgacttattt aggtgagtta ggcttcgctc tgctgttaca gctgttcatc
    17221 ggtctgtcct gttttcattt attggaattg ttgagagggg atagacagga gttttcttta
    17281 aaagatagtt tttcctttct aaagacagaa tggaagaagc ctatctgtac cacttttctt
    17341 tattattatt tgcttctttt tatggctgga cttccagcta atctaggggc tgctttattt
    17401 attaaaggct tcgcaatgag tagtttgatg gtcttatctc cgggagcaat ggcagagctg
    17461 gcagttcatc agcctagtca attaatgaag ataggggctc cgattttcct gctaggaatg
    17521 attatttacc tttttgtcta ctatacctac tcacaggttg tttttgtctt gtatgaccat
    17581 ttggataatg ctagttatac tggtcccctg gctgtattta gggaaagtcg tttcttgatg
    17641 aaagggaact attggcaacg tatttggtta gatttatcct ttttaggatg gtttatcggg
    17701 gaagtattta cccttcatct gttatctttt tttgtgactc cttactatca tttatccagg
    17761 accattttct acgaaaaatt gaaaaaacaa agactgtcag ctgtagagta gctaacagtc
    17821 ttttatggtt atagggagct tgttttgggc ttgaaataga gatcgtaaac caaccaggaa
    17881 atcattattc cttggacaag caagctgatg atggagccct ctaggccaaa ctttccacca
    17941 gatagccact caggaccagt gataccgatt tgaacaaagg cctgaccagc atcggtgccg
    18001 ctgactggga aagcaaaaac attcccttgg aaacagttcc acgcagcgtg taatccacca
    18061 atcacccaaa tgttgcctgt tttgagcata atgaggcagg caagaacggc aaatagggtt
    18121 aaatccaaaa ttggaatgag tgaaatagca ttgtttccga ggtggagaaa tgtgaagaag
    18181 agggaagaaa caatgatacc gataggaata ttgtgtttag ctgaaagtga tgagaacatc
    18241 catcctcttg ttagaatttc ttctgtcgta ccttggatag accaggcaag gataaggata
    18301 ataaattctc cgactaattt tgtagagaac tggatgcttg taaattcaat cgcgcctaat
    18361 ccccacatga tgagtgtaca agtggtcagc attgcagctc cgattcccca cccgagtaga
    18421 aaatcttttc ccgcaccttt tttagtaaaa ccaagtccta cccacgggct tttttcaata
    18481 taccgtgccc ataaaatgac catcaggctg ataaaagcga aagcgaatag ttcaaaactt
    18541 acagaaaggg tctcgctaaa tgggagtaaa aagcttattg gagtgaaaat aactgctcct
    18601 agtgaatctc ctactagcaa caaaataata gctacaatag gagaggtgat gatgttgaga
    18661 ttgaaagctg attgagcctt ctcattgata aattcggttt tcataggacc tccttttact
    18721 agatacttta ctagttcact attctatcat atttttccaa agaagactag acctaatttc
    18781 ctagtatatg gtagaatagt acaaagctat ataaggagaa tagtatatgg aattgaatca
    18841 atggctgaag tcctttcaac tgaaagataa tcgactagtg ggcccattct tttatggcac
    18901 acttcttgct cttagatttg aaatcgggcc tgcagacgaa gcagaagaat tatcaagagc
    18961 aatctatctt gaaagagcct atgcacgtgc agtagaactt tttgagcagg ctagttcaga
    19021 atacgactat gtgctccttt cgctccttcg acaggaagat agggatatag acacctacct
    19081 ctggcatttt tcatcgaaat ttaacttcga caaggtccct gagcctgagt tgatagaagt
    19141 ggaggattgg acgggagatg tgctagtctt tgagtgctat ctctttccag ttaccgacca
    19201 ggacctgaag gctttgttga gggagattgt caaagccgac catggaggtt ttcactacct
    19261 ttctgcttca gttatctttc tatctagcaa ggacaaggtt ctgtatcatt gctatgacga
    19321 taggggagtg gatatcgcgg tggtagatga tgacaaacga cgtcagcttt ttacggactg
    19381 tcatgacctg ctttttgact atgatatgga ggagatggtg aggaggatgg atttttaaaa
    19441 aaactaatat aaaaatgccc atgatatact acgtatacca tgggtttgac tttcagtcaa
    19501 accctaacaa caacagtcct atcacaaaat aagattagga aactgaatgg tgtgtttagt
    19561 ataataacgt gggttatttt ttcatcaaac gctccttttg tactaataca aatgtgttag
    19621 gaaaagctag gagatcttat ggcaaagttt gatattatta caatcgaaga caagattcag
    19681 cagttattgg aggatggttt tgaccaagct tcttttatct atgaattctt gtctttttat
    19741 gatatttcaa aaacagctat cacccgaatc cgtaaagaac aaagtggtga aatcaagaac
    19801 aaattgtatt acaagacggt tcctactgat aagtcggttg tggcaggtgt tgctgagatt
    19861 gaagaagcaa tcaaggataa aaaatcacaa ccccgttata tcattgtgac caactttgtg
    19921 gactttgcag ccaaggatac caagactttc gataccttac agatcccttt taaggatttg
    19981 ccgacctatg ccgatttctt cttggcttgg aatggtgtag agaaggtaga ttatgccaag
    20041 gaaaatcctg cggatattaa ggctgcggaa cggttcacac gtttgtatga tgaattaaag
    20101 aaaatcaatc actttgatga ccgtagtcaa gaggaaaaag agtttaacct gtttttgatt
    20161 cgcttacttt ttcttttatt tgccgaagat acagaaatca tgaaaaaagg tatttttacc
    20221 aatgccatca aaactcgctc gcgagaggac ggcagtgatc tgaatactct ttttaatcag
    20281 atatttgcca gtctggatat tgctaatcgt cttagccaag aaaactggtt acaggaattt
    20341 ccatatgtca atggaaaact ttttacagat gcatcaaccg atctagtttt tgataagaaa
    20401 acaagaaaat taatcttgga agcaggcgag ctcctcaact ggaatgaaat caatccggat
    20461 attttagggg ccatgattca gacagtggct agcagtgagc accgttcaag ctctggtatg
    20521 cactatactt cggttgaaaa catcatgaaa gtgattaaac cgctctttct tgatgaactg
    20581 actgcaaatt tccagactat tgtagataaa atcaatgaga acgaagacaa ggacataacc
    20641 gagcgaacca ggcgagagaa tagggcggct tacgaaaaag aattgtccac acttcacgaa
    20701 cacctatcca agataaaatt ctttgaccca gcctgtggct cagggaattt ccttatcatc
    20761 acctataaag agcttcgtcg tttggaaata agactattaa aagcactacg agaactacga
    20821 caagatggaa aaattgattt cttcgaaacg tcgaagatta gcttgaatca gttttatgga
    20881 attgaattag atgattttgc acatgaagta gctagattat ctctgtggat tgctgaatat
    20941 caaatgaatt tagaagcact aaatgaaatc aatttacaat ctgcctttct ccctctgcgt
    21001 gatgctggaa acatcactca aggaaatgcc ctgagacttg actgggataa agttgtccct
    21061 cataccccaa ccgatgaaat atacctgata ggaaatccgc cttatattgg ggcaaaaatt
    21121 gcaaaataaa gaacagaaag aagatttacg cctgacgatt ggtgaacaat tcaagtataa
    21181 gaaaatggac tacattgcag gctggttcta caaagggatt gatttcataa atacttcgaa
    21241 tagcaaactt gcttttgtaa caaccaactc tatttttcaa ggggaacaag ttgcttttat
    21301 ttggcaacct gtattatata aaatggagat agagtttgct tatacatcat tcaagtgggg
    21361 gaacagcgct gcaaataatg ctggggtaac tgttgctata gttggattgg caaataagaa
    21421 caatgcaagt taccaaaaat atatttttga tgaaaccttg gtacgtcaaa cggttactca
    21481 tatcaatccc tacttagcta gcggggaaga tatactggtt gagagtagta atagtccgat
    21541 taatagattg cctaaaatgg tgttcggtag tatgcctaga gatggcggtc atctgattat
    21601 ttctgactta aatgaaagga ataagatagt agaaggaaac cctgatcttg agccgtttat
    21661 taagagatat atcggcagtg aagagtatat caaagataaa ccacgatatg tgttttggct
    21721 gaataaagaa gaatatcaaa ctgttcagaa taactcattg ttaggtttaa ggattaaggg
    21781 tgtagcgcag gctaggatga gtagccctgc aaagtccact caagatgcag caaaaacacc
    21841 ttatgcattt gttcaaaaag gtgagtggga cgaagcttac tcgaccttca aacaatcagg
    21901 tgcagatgag tttgttcagc tcttggttcc tcgagtatca tctgaaagtc gtgactatgt
    21961 tcctatggga tttgttggag aagataccat catttctgat tctgccatgg ctgtctacaa
    22021 cgcccctgtc tatctgcttg gtcttctcat gtcacggctt cacatgacct ggttgcgggc
    22081 tatcggtggg aagttagaaa ctcgttatcg atactctgct ggtctggttt acaacacctt
    22141 ccctgtacca gagttatcca ctaagcgaaa aaatcagatt gaagaacaag tttttgaaat
    22201 ccttgactta cgggaagaat taggtggtac cttagcagag ctttatcatc gtgataccat
    22261 gccacaagca ctccgagaag cccatcaggt actagatagc attgttgaac gcgcctataa
    22321 ggaaacacca tttaccagcg atgaagaacg cctcagccac ctcttgaaac gctataagaa
    22381 aatgaaggag caatcatgag ccagcttttt gaagtgacct atggtcagaa gaaaaccagc
    22441 gtcaatacca atgaattggg catgcgtgag atgcaggcgc gtgtctgtga aaagagaaac
    22501 agcccctacc tcttggtcaa ggccccgcca gcatccggta agtctagggc actgatgttt
    22561 gtagccttgg ataagttgaa acgccagggc ttgaaaaaag ctatcgtagc cgtaccagaa
    22621 aagtccatcg gcaagtcttt tcgttcgacc aaactttcgg actttggcta ttactgggat
    22681 tggatagtca aagatgagaa caacttaacc acatcaggta ccgccaaaag caaggtagaa
    22741 aaatttatca actttatcca atctactgat gagacagatg atgtcttgat cgtaacccat
    22801 gccacgctcc gctttgcttc ggagcaactg gatgccagtg attttgatgc ttgtttgctt
    22861 gccattgacg agtttcatca tgtctcccag gatgataatt ctgtattggg caatgccctg
    22921 cgggaagtct tgcaaaaatc aacggcccat atctttgcca tgaccggttc ctatttccgt
    22981 ggagatagtg tacctatctt ggatcatgca gatgaggcac gttttgagcg tgtgacctat
    23041 acttactatg aacagttgga aggctatcaa tacctcaagt ccttcgtcat gaactacaag
    23101 ttttaccgtg gtcgctacac ggatgccttt ccagacttat tgcctgagtt tatcgacaag
    23161 aaaaccatta ttcatattcc caatgttaat tcaggtgagt cttcaaagga taagtatgga
    23221 gaggtggatg agattttaga ttgtctagga gattacctgc ataaagatga gcatgggatt
    23281 attcatcttc gttctaagac aggtaagatc ttgaagattg cggacttggt gactgaggac
    23341 ggtcgtgatt tagtcagcaa ttatctggcg aaaatggata gtgaagacga gctggatatg
    23401 attattgctc ttgggatggc taaggaaggt ttcgactggc catttgcaga atatgccctg
    23461 actatcggct accgctcttc gctgacagag attgtccaga ttatcggacg ggtcacgagg
    23521 gacagctcaa acaagaccaa agcccaattc accaatctaa ttgcagaacc agatgccgaa
    23581 gatgaggagg tccaattctc tgtaaataac atcatgaaag ctattactgc tagcttgttg
    23641 atggaaaatg ttttatctcc ttcattcaag tttaagcgta aggaaaatga cggccagaaa
    23701 gctaacggag ctgagatttt tatcaagggt ctagcaaagc catcaacgga acgtactcaa
    23761 aaaatcattg agcaagatat aactgactta aaagcctctg tcttgcaaga tgatgtggta
    23821 caggcagcta tttctgcagg tgcagagagc aaggtcatca ccaaacagtt gattccaaga
    23881 gtgattgcga ctcgttatcc agatttgaca cagacagagg ttgaagaggt tcgtcagcat
    23941 ttagtcgctg atttgacctt atccaatgct aagaaagaca gcgaaaataa taagctgtta
    24001 aaaatggcgg ataaatttat caatattgac gacttaagta tagatttgat tgatagtgtc
    24061 aatccatttc aaggtgctta tgaggttctg tccagggatg tagatagtcg taccttaagc
    24121 ctgattgcac gggtatttga tgcaaaaaaa gtagagttta caaccgacga attgcgcatg
    24181 ctttatcccc agattaaggc ttttcaggct gagcatggac attcaccaag acgaaattcc
    24241 tcagatttag aggaagaacg actttacttt gccttagcta agcttgatga actccgtcgt
    24301 gaaagggata atcaatgata gaaaattttg caaccttaga agatattttt gcggatgaag
    24361 cctttgaaag cttggttgct gggattcgtg ttgtcaaagt tgaaagatta gacccagaaa
    24421 tagagaaatt tatggaaatc tgtcaatggg ttaaggaaca tggacgagag ccgcaaagaa
    24481 gtactcaaat caaagaacga caattattca gtcgactgaa ggctattcgt gcagatgagg
    24541 ggagaagagc tcaagttagc gcctatgatg aattggattt gttaggagat agacatgatg
    24601 gatgacttag atgatatttt aaatgatgat tccttgtttg aaaatttcga aacagataga
    24661 actttattta gcactaaacg ctatcaggga acagttagag ctaggagtaa atctagtagt
    24721 cgtacacgtg ttcaaactgg ctttgacacc tatcggaaat tgtttacaca ggttcatgct
    24781 gatattgctt gtggtaaacg tcagataaaa tccatcgagg aaaccagtca aggaaaccgt
    24841 atcagtcgga aaaatccaat taaacaggga aatttctatg ttgataatgg tgttatgctg
    24901 tatgttgtca aaatttatga ccctcagacc aatgtggaag ttggccagtc tacagagcgt
    24961 aagtacaagg tgcatatcgt atatgaaaat ggaacggaga atcatgtttg gctcttgagt
    25021 ttgatttcat cactatatga taaaaaacgt tcgggtagat tggtaacaga acccttggac
    25081 acaatttcta tgctaggtga ggaagccgca aaatatcaca caacaggcta catttatgtt
    25141 gtcaaatacg ctggaacaga taatcgattt ttagaattgg ataacctcta caagataggg
    25201 gtagctacag acatcaaaaa acggctttca aatagccaaa acgaagcgac ttacctgtat
    25261 gctccagtcc atctggtagc cagttatgag atccagaatg tttccgcaag taagttagag
    25321 aaatttctac atgatgcatt tagtgataaa cgggttcaac tggagactgc ctcaccaact
    25381 ggcaaaaaag tttctgttac tgagtggttt gtggtagaat tagaacagat tgaacaaaaa
    25441 atttatgagc tttttaagca actaaatctc tgacatctta tcagctaaac cagtggagaa
    25501 atatattgtt cgtttctatt ttcacatttg cgatttgtta tctgctaggc attatcgcca
    25561 tagccatagc tttcacattc tttcgcagga agtagaagga cggacagatg gacaaacttg
    25621 ttatttggtt tttgatttta ctctgggctt caccagtgat tattgttgcc ttggcaggtg
    25681 gattcattat tttcagtctc ttatttggta gacggaaata atgtctttaa tcattgcaaa
    25741 ttcacacaac ctatcgtaaa atagtaatat atctaggata tacaggaagg ggttgctatg
    25801 ccttaccgta aattaacatc aagagatcgg tcttttatca aagggcagac ggaccgtttg
    25861 ctgaatcaga tgaatagcaa tgcggcctat ttggggacag ttcagaccta tgaagcagcc
    25921 aaggctaggg ccaaccaagc ctatctggca atggaactgg aagacgaccc agagaaaaag
    25981 gtgcgactgg caaaattggt tgaaaactat actgctcaag cccaggctat attggatgag
    26041 tgggaggaga aaaacagtcg tacagagaaa acgaccagaa atgtcaagtt gatcttgtgg
    26101 ctgaccgtac tgttcaccct tagctttgtc ttccccgtca atatcattct agccattctt
    26161 ttttccgttt ggttttatcg gaattacctt cgttcaagta gaactgacca agtgattaag
    26221 gctgctaata gccaatcttt gacagaagag gaaaggtttg aagactggtt gacagaaaag
    26281 attgtcgtcc tcaacaagga caagcgccag tggacagagg ggataatcgc aaaatatgac
    26341 agtttagatg aaattgcagc aggtatcggt gaaatggatg agatagataa agtagctggt
    26401 gagaagcttc ttcgacgcta tcaggacatt ttagcagata ttgaaaaact gccagattct
    26461 gaacagaaaa cctattattt ggattttcat caggaaatca ttgccgactt ggaagatcta
    26521 ttccaacaac tccattttgg ataagaaaaa ccggtaacag tacaaggctg ttgccggttt
    26581 tgttatgtga cttttagtcc gtcgcgctcc gtaaggtgcg cgacgaaggt tataccaaaa
    26641 aaactccaaa cgcgatacaa taaaggtgtt caagccaatt gtaaagcgag aggagaaaag
    26701 tatggcacaa aaggcacata gtttatcaca tataaagtgg ttgtgttcta ccacattgtc
    26761 ttcacaccta agtatagacg aaaaatcatc tataatcaat atcgaagtag tcttggagag
    26821 atatttcgac gtttgtgtag ttataaaggt gtagaaatta tcgaaggaca tctgatgccg
    26881 gatcatgttc atatgttagt cagtattcct ccgcgattaa gtgtatcaag ctttatgggc
    26941 tatttaaaag g
//
LOCUS       DASGBY010000013        25468 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.013, whole genome shotgun sequence.
ACCESSION   DASGBY010000013 DASGBY010000000
VERSION     DASGBY010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 25468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25468
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.013"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            103..486
                     /locus_tag="U1396_000432"
     CDS             103..486
                     /locus_tag="U1396_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5341647.1"
                     /translation="MKIEHVAIYTQDLEGMRNFFENYFNATSNQLYHNLKTSFKSYFL
                     TFEDGARLEIMTRDDVVDKPSQLNYLGLIHLAFSLGSEEAVDELTERLVAAGYLLLNG
                     PRITGDGYYEPCVLGFDDIQIELTV"
     gene            780..2213
                     /locus_tag="U1396_000433"
     CDS             780..2213
                     /locus_tag="U1396_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002358345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5341648.1"
                     /translation="MSKLPKNFLWGGAVAAHQLEGGWQEGGKGISVADVMTAGRHGVP
                     REITAGVLEGKYYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPKGDELEP
                     NEAGLQFYDNLFDECLKYGIEPVVTLSHFELPYHLVTEYGGFRNRQTINFFVRFAETC
                     FRRYKDKVKYWMTFNEINNQANYQEDFAPFTNSGIVYQEGENREAVMYQAAHYELVAS
                     ARAVKIGHEINPDFQIGCMIAMCPIYPATCKPSDILMAQKAMQKRYYFADVHVHGFYP
                     EHILRYWERKGISVDFTEEDREDLLEGTVDYIGFSYYMSFAIDSHRENNPHYDYLETE
                     DLVKNTYVKASDWEWQIDPEGLRYALNWFTDMYHLPLFIVENGFGAIDQVEEDGMVHD
                     DYRIDYLGAHIKEFIKAVDEDGVDLMGYTPWGCIDLVSAGTGEMRKRYGFIYVDKDDE
                     GNGSYARSPKRSFAWYKNVITTNGEEV"
     gene            2294..2533
                     /locus_tag="U1396_000434"
     CDS             2294..2533
                     /locus_tag="U1396_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family sugar transporter"
                     /protein_id="HEM5341649.1"
                     /translation="MVGFIAACLTTFGFVPQVIKVVKTKDTESISLGMYMMSVAGMSL
                     WLFHGIIQGDTALIIANSLSVTLAGIILVYKLVYK"
     gene            2758..3096
                     /locus_tag="U1396_000435"
     CDS             2758..3096
                     /locus_tag="U1396_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341650.1"
                     /translation="MESIVGIVVIVVVTVVLVYLLTNMWKIRAASVGQTDDTTLYFVR
                     FKGVNPPDLANSSVFNQVAKIKCAKGDTYQVTSTVNDVKLRDVIMDEFQLKSSEVVVY
                     YPPRLFFYAS"
     gene            3274..3588
                     /locus_tag="U1396_000436"
     CDS             3274..3588
                     /locus_tag="U1396_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIB"
                     /protein_id="HEM5341651.1"
                     /translation="MVKALIICAGGMSSSLIAKKTQTLLEEQGHKVEMNAVGVPEGGK
                     KINAAEYDLYLISPQTKMHFKQFEEAGKKVGKPIVQIPPQAYIPIPMGIEKMAKLVLD
                     NI"
     gene            3635..5608
                     /locus_tag="U1396_000437"
     CDS             3635..5608
                     /locus_tag="U1396_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5341652.1"
                     /translation="MLSTKEKMILQYLYQHQNIFSTSKVLAEHLSYTDRTIRTYIKKM
                     ASEISEEETGFAILSKQGYGYQLRISDEEKYHRFLSENQLIFGVDYSDAENRHKQILN
                     KLIFEEECILFDDLADQLFVSRSTLSHDFKHIREHLASYGLSIESKPYKGVYVVGEER
                     QKRHFIMDYFFSEHFYQNIHHFLSNDKSLALPLSFEELTIVVLDECRDSQLKLSDYII
                     QNLVIHLGLAIQRYQKGFIISPVTIDKEKYAEELAVATKIARRLSHRLEPQNRFPEEE
                     VVYIALHLISKTQLEVEKSSDRLLLRQALFEVLGRYDDEYGYQFSHDFSLIEGLLTHL
                     EVLVERLRHNLHIDNPLLDDIKTTYHDIFDLTQSLMAELSVFHSYSLSESEIAYVALH
                     LMASLERQKEKYKLNVLVICATGYGSAQMLKNRIKNELGQQVSISDVIGYYDLDNQKL
                     QGVDVIMSTIDLSGLVFKVPVITVSVFLTDQEVKEVKQRLADLRPSLQKTQVVERESN
                     LEKYFDQYFSEQRFLVVESAEKEMLLKQMISQLESEGLGNHQEFYKLIEARESLSTLV
                     FDKDIAVPHPLKPISEKHMISVAVIKNGLYWEEGYGQIRLVFLVSPSIYTNEGLSTIT
                     NRLVDLVDLPEVKKDIINSPDFETFKHVFLQRE"
     gene            5619..5933
                     /locus_tag="U1396_000438"
     CDS             5619..5933
                     /locus_tag="U1396_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIA"
                     /protein_id="HEM5341653.1"
                     /translation="MNTEELQMAAFGIILSSGNARSVIHKAFAAMREGDYDKAEELLE
                     AANADMLEAHHSQTGLLQEYASGTEVKVEIIMVHAQDHLMTTMTLREVALEMLALYRK
                     VG"
     gene            5948..6460
                     /locus_tag="U1396_000439"
     CDS             5948..6460
                     /locus_tag="U1396_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341654.1"
                     /translation="MSKGMASKKLQKTPEQLKQESKRKSQLFNRYMLFRYSLAVFFFA
                     NLYWLLVQLFQPSLYLILPSLMLIAIIIATAEQFKLYSAEESRLTKTEFVLRAQAILQ
                     GLIVVLVILGHISTLFPTFSNHISAKLFVIALQLLGLALVVLNIKRLEQVRQNTDKYY
                     LRFQIIRKYL"
     gene            6480..7829
                     /gene="celB"
                     /locus_tag="U1396_000440"
     CDS             6480..7829
                     /gene="celB"
                     /locus_tag="U1396_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIC"
                     /protein_id="HEM5341655.1"
                     /translation="MEEQKGFFGLLDKYLMGPMGKLASYKVVRAITAAGMAAVPFTIV
                     GSMFLVFSILPQAFSFWPIVSDIFAASFDKFTPLYMVANTATMGVLSLYFALAIGYEL
                     TKIYAEEEELNLTPLNGALLSLFAFIMTVPQIIFENGAMSAVTSLKEGAVIVDGWAMG
                     GGVTRFGTTGIFTAIIMAVAAVLLYRMCVKNNWVIKMPDSVPEGVSRGFTALIPSFVV
                     AFFVIFLNGVLVALGTDIFKVIAIPFSFVGNLTNTWIGLVIIYLLTQALWVVGIHGAN
                     IIFAFVSPIALANMSLNAAGERMIVAGEFSNMFVIAGGSGATLGLCIWLATRARSEQL
                     SAIGKAAIVPGIFNINEPLIFGLPIIYNPALAIPFMLAPIASMTVYYFSMKLNLINAV
                     VAQVPWPTPVGIGAFLGTADWRAIVVSIVCAVVAFLVYYPFIRAYDKQLLKEEAANA"
     gene            8235..9701
                     /gene="ascB"
                     /locus_tag="U1396_000441"
     CDS             8235..9701
                     /gene="ascB"
                     /locus_tag="U1396_000441"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5341656.1"
                     /translation="MTKQFPKGFLWGGATAANQYEGGWNLGGRGPATSDTYIAVDPDK
                     RKDMSHFGKPVSRADVEFALADQEGLYPKRWGSDFYHRYKEDIALFAEMGFKTFRLSI
                     AWSRIFPKGDELEPNEEGLAFYDAVFDELNKYGIEPLGTLSHYEFPLHLALEYGGWKN
                     RKVIEFFVRYAETVFKRYQGKVKYWLTFNEINILGMVGYLSGGLLFEDGKNDLEAMYQ
                     AVHHQFIASSLATKAAHEIDPENKVGCMLARMENYAATCNPDDVLAALKKDQENLFYT
                     DVQVRGAYPSYMKRFFKENNIQVVFEPGDEAILKQYPVDFMSFSYYMTSITRALPDKD
                     KATAGNLILGEANPYLEASDWGWQIDPVGLRITLNKLYDRYQVPLFIVENGLGALDKV
                     EADGSIEDGYRIAYLEKHIQQMYEAIEDGVELMGYTPWGCIDLVSASTSEMSKRYGFI
                     YVDADDQGKGSFDRSRKASFYWYKDVIASNGANVLTEK"
     gene            9710..10312
                     /locus_tag="U1396_000442"
     CDS             9710..10312
                     /locus_tag="U1396_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5341657.1"
                     /translation="MTKTIYLMRHGETLFNTQKRVQGWSDSPLTERGIAQAQAVGQYF
                     KEQGIVFTSAYSSTQERATDTLKLVTDAPYQQLKGLKEMNFGIFEAREEELLPKHRPG
                     ARSFEDLLVPFGGEDIRAVGSRVKEAILSVAESDPADPILMVSHGAAIWGLVQVLEVT
                     FPPGVFLPNCAICQLTVENEQIRFEKLIDSAHDFKVYDFK"
     gene            10324..10941
                     /locus_tag="U1396_000443"
     CDS             10324..10941
                     /locus_tag="U1396_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5341658.1"
                     /translation="MNYLYLMRPGQTRFNQQGRIQGACDSPLTELGREQALAAHQYFQ
                     EQGIEFDKIYSSTQERACDTAELVTGRTDYIRLKGLKEQDFGAFEGQQEYLNPPLQGD
                     IGYGDYFVTFGGESYQDVRQRMVETIGGIMEEADNQSVLVVSHGAAIAQFFRQVLTDY
                     PQVRMRNCAILTFTYEDGHYDLQSIVDPVNKENLYQKEGKEKEKK"
     gene            10938..12377
                     /locus_tag="U1396_000444"
     CDS             10938..12377
                     /locus_tag="U1396_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5341659.1"
                     /translation="MTVTKVFPKGFLWGGATAANQCEGAYDVDGRGLANVDVVPIGQD
                     RAAIITGRKKMFDFEDGYFYPAKESIDMYHHFKEDIALFGEMGFKTYRLSIAWSRIFP
                     KGDELEPNEKGLQFYEDLFKECHKYGIEPLVTITHFDCPMHLIENYGGWRNRKMLEFY
                     ERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENVEQVKYQAAHHELV
                     ASAIATKLAHEIDPENKVGCMLAAGQYYPHTCHPRDVWEALQEDRENYFFIDVQARGY
                     YPNYAKKKWERAGIEIEMTNQDLALLKEHTVDFISFSYYSSRVASGDPVEKEKTAGNI
                     FASIKNPYLDASEWGWQIDPLGFRITINSIWDRYQKPLFVVENGLGAVDTPDENGYVE
                     DDYRIDYLRQHVLAMRDAIVEDGVELMGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDN
                     EGNGTLKRSKKKSFEWYKKVIATNGADVG"
     gene            12461..13450
                     /locus_tag="U1396_000445"
     CDS             12461..13450
                     /locus_tag="U1396_000445"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014677692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HEM5341660.1"
                     /translation="MKYIVNNSNDPAYNIALEAYAFKELTDIDEIFILWINEPAIIIG
                     KHQNAIEEINKEFTDEKGIHVVRRLSGGGAVYHDLNNLNYTIISNKADEGAFDFKTFS
                     KPVIDTLATLGVEANFTGRNDLEIDGKKICGNAQAYAKGRMMHHGCLLFDVDMSVLAS
                     ALKVSKDKIESKGVKSVRARVTNINNELPEKMTVLEFKDAILNQMKQEYPDMDEYVLS
                     EGDLARIQEICDTQFATWDWTYGQTPEYTVERSVRYPAGKITTYIKAEKSVIESIKIY
                     GDFFGIGDVSDIEDLLVGTRYEYADVLAKLQEIDTTHYFSRMTTEEVAKAIVA"
     gene            13622..13912
                     /locus_tag="U1396_000446"
     CDS             13622..13912
                     /locus_tag="U1396_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEM5341661.1"
                     /translation="MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATIVESKAWE
                     KRRLAYEIKDFREGLYHIVNVEANNDEALKEFDRLSKINGDILRHMIVKLDA"
     gene            13924..14418
                     /locus_tag="U1396_000447"
     CDS             13924..14418
                     /locus_tag="U1396_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM5341662.1"
                     /translation="MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGER
                     EADFINVVIWRQQAENLANWAKKGALIGVTGRIQTRSYDNQQGQRVYVTEVVAESFQL
                     LESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
                     DLPF"
     gene            14451..14690
                     /locus_tag="U1396_000448"
     CDS             14451..14690
                     /locus_tag="U1396_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002983142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEM5341663.1"
                     /translation="MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFISERGKI
                     LPRRVTGTSAKNQRKVTTAIKRARVMALLPFVNED"
     gene            complement(15027..15683)
                     /locus_tag="U1396_000449"
     CDS             complement(15027..15683)
                     /locus_tag="U1396_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HEM5341664.1"
                     /translation="MSFIEINGLTKKNQEFIHIATNQLIKDGKSDSEIKELLEEILPT
                     IIEKQKTGVTARNLYGAPSEWAASKTISEQEKKDQVEYNENPWLMWLDSSLFMLAIIA
                     GINGLMNLFGQGAQYGLLTLFVIGFGVGAGMYLMYHFVYREQIKTGQRPKLLKAIAFL
                     GLATLAWSVVFILAALIPAAFNPVLPPLVTILIGAAAFGARYLLKKKYNIRNAMSPVQ
                     "
     gene            complement(15699..16643)
                     /locus_tag="U1396_000450"
     CDS             complement(15699..16643)
                     /locus_tag="U1396_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004250490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM5341665.1"
                     /translation="MKQIFLSTMTDLEEIQTFEPGAWINLVNPSQSESMEVAEHYKID
                     IADLRAPLDAEESSRITVEDDYTLILVDVPILEERNNKTYYITIPLGIILTDDAIITT
                     CLEPLPLFEQFIHRRLRNFFTFMKSRFVFQILYRNAQLYLSALRTIDRKSEEIEKQLH
                     EATRNEELIVLMELEKTIVYFKASLKTNERLVKKLASSSRLLRKYEEDEDLLEDTLVE
                     TQQAIEMADIYGSILNSMTHAFASIISNNQNTIMKTLALVTIVLSIPTMVFSAYGMNF
                     KDNIIPFNDIPYAFWWIILFAFAISLSLTFYFIRKRWF"
     gene            17437..20262
                     /gene="uvrA"
                     /locus_tag="U1396_000451"
     CDS             17437..20262
                     /gene="uvrA"
                     /locus_tag="U1396_000451"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM5341666.1"
                     /translation="MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFD
                     TLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTA
                     TEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
                     GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRL
                     FDSIEAALRIADGYVIIDTMDEKELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCS
                     DCDGLGMKLEVDMDLIVPDASKTLRDGALAPWNPISSNYYPQMLEQAMNHFGVDMDKP
                     FEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYT
                     RTVMKTYMNELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIEHLTL
                     SENEAIIATPIVKEIKDRLSFLNNVGLNYLTLSRAAGTLSGGESQRIRLATQIGSNLS
                     GVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLIDIGPGA
                     GVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNL
                     QDVTVRFPLGKFVAVTGVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHL
                     DRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRC
                     EACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVE
                     FFKHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYIL
                     DEPTTGLHTEDIAQLLKVLARFVDDGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGT
                     VVATGTPEEVASNPASFTGQYLKMKLK"
     gene            20361..21422
                     /locus_tag="U1396_000452"
     CDS             20361..21422
                     /locus_tag="U1396_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM5341667.1"
                     /translation="MQARVEKFEAKLAQSDVDGILVTGQNNIYYLTGFWGTEATVFIS
                     GKRRLFVTDSRYTLIAKASVKGFDIIESRFALEEIAKVIKEDGLEKIGFDSEVTYGFY
                     QSLTSIFEGYQLVAMSNFIEDLRMIKDEKEIATIRRACQISDQAFIDVLDFIKPGQTT
                     EMDVNHFLDHRMRQLGAEGASFEFIVASGYRSAMPHGRASEKVIQAGETLTLDFGCYY
                     QHYVSDMTRTIHIGHVTDQEREIYDVVLRANKALIEQAKEGVTYREFDAIPREIINAA
                     GYGANFTHGIGHGIGLDIHEYPYFGKSDETIKAGMVLTDEPGIYLDDKYGVRIEDDLL
                     ITENGCEVLTLAPKELIVI"
     gene            21486..22043
                     /gene="efp"
                     /locus_tag="U1396_000453"
     CDS             21486..22043
                     /gene="efp"
                     /locus_tag="U1396_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEM5341668.1"
                     /translation="MIEASKLRAGMTFEAEGKLIKVLDASHHKPGKGNTIMRMKLRDV
                     RTGSTFDTTYRPDEKFEQAIIETVPAQYLYQMDDTAYFMNTETYDQYEIPVATIKEEL
                     LYILENSDVKIQFYGTEVIGVTVPTTVELVVAETQPSIKGATVTGSGKPATMETGLVV
                     NVPDFIEAGQKLVINTAEGTYVSRA"
     gene            22071..22463
                     /locus_tag="U1396_000454"
     CDS             22071..22463
                     /locus_tag="U1396_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM5341669.1"
                     /translation="MTTEYQGEIVIAPRVLEVITGIAAAKVDGVHSLQNKRVADSLSK
                     TSLNKGVYLETDEEGRVTADIYVYLEYGVNVPAVSMDIQRAVKTAVYNYAEVQVAAVN
                     IHVSGIVPDKTPKPALKDLFGEDFLDEE"
     gene            22453..22872
                     /gene="nusB"
                     /locus_tag="U1396_000455"
     CDS             22453..22872
                     /gene="nusB"
                     /locus_tag="U1396_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEM5341670.1"
                     /translation="MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGV
                     EIPLFLLNLVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEET
                     PDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIKEEA"
     gene            complement(22951..23916)
                     /locus_tag="U1396_000456"
     CDS             complement(22951..23916)
                     /locus_tag="U1396_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5341671.1"
                     /translation="MVAKLTDVAQLAGVSPTTVSRVINKKGYLSEKTIRNVEEAMREL
                     GYKPNNLARSLQGKSAKLVGLIFPTINNIFYSELISHLEKELFDRGYKTIICNSQHES
                     DKEREYLEMLAANQVDGIISGSHNLGIQDYDRVVAPIIAFDRNLSPSIPIVSSDNFAG
                     GVLAAQTLQKAGCHNPLMITGNDDSNSPTGLRQVGFTSILNKAEVFHISSDFSPVRKE
                     MEIRAILEKQKPDGIFVSGDATAMLVWNVIRSMKLSIPEDIKLIGYDGTSFIENYYPQ
                     LTTIKQPLTEIARLLVELLVDKIEGKKLTKTDYILPISLLAGASI"
     gene            complement(23897..25351)
                     /locus_tag="U1396_000457"
     CDS             complement(23897..25351)
                     /locus_tag="U1396_000457"
                     /EC_number="3.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-6-phosphate hydrolase"
                     /protein_id="HEM5341672.1"
                     /translation="MAFTTEERYRAYADWTPEYIEKIKKNTENSPWRTNFHIETPHGL
                     LNDPNGFSYFNGKWTLFYQYFPFGAAHGLKSWVHTESTDLVHFEKTGTVMYPDTPLDS
                     HGAYSGSAMEFGDKLFLFYTGNVRDENWVRHPYQIGALMDKDGKIEKIDKVLIEQPED
                     TTDHFRDPQIFNYKGQYYAIVGGQNLDKKGIVKLYKAENNDYLNWSYVGDLDFANDMT
                     AYMMECPNIAFVGEQPILLYCPQGLDKEVLDYSNIYPNMYKIGQSFDPETASIVEPSE
                     LINLDYGFECYATQAFNAPDGRTLSVSWLALPDVEYPTDAYDYQGCLSLVKELTIKDG
                     KLYQYPVDAITSLRKEAQPFSAQKETNNVYELELDFSAGTKHEIVLFANEAEKGLVLS
                     VDTEQGQITLDRGNCGQPFALDFGTSRSCEISPGALTANIFIDKSVFEIFINKGEKVF
                     SGRVFPDADQSGIVITTGNPTGTYYHLDYGRKTN"
BASE COUNT         7397 a         4823 c         5766 g         7482 t
ORIGIN      
        1 cttgctatct ttcacaaact tcttcaattt tttatatttt taggagtttg tctaggttct
       61 gagacggcac tttgccgttt tctattaggg aaaggtttga aaatgaaaat agaacatgta
      121 gcaatctaca ctcaggattt ggaaggtatg cgtaatttct ttgaaaacta cttcaatgcc
      181 acatccaatc agctctacca taatctaaaa accagtttca agtcctattt tcttaccttt
      241 gaagacgggg ctcgtttgga aattatgacc agagacgatg tggtcgacaa accaagtcaa
      301 ctcaattatc taggacttat tcatttagcc tttagtctag ggagtgagga agctgtggat
      361 gagttaacag agcgacttgt tgctgcaggc tacttgcttc ttaatggacc acgaataact
      421 ggggacggct actatgaacc gtgtgtgttg ggatttgatg atatacaaat tgaattaaca
      481 gtgtaatgtt ggcaagtaat actgctaggt caatgtttaa cggattagct tgcaagtatc
      541 attcattagc gatttcctta ctgttacgga aaaaactgca atggtgattg atgtaaacgt
      601 ttgctaaact aataactata ggaacctgta ttcacaagta gggggcttgt atataagaga
      661 tgttttgagg gaatactgac tgtattttga aaaaaactaa caatgagtag cttaaaaatt
      721 agtcttagat ggaaattctg aactgtaaat acaggttcta aaatatacag gaggcaatta
      781 tgtctaaatt acctaaaaat tttttatggg gtggagcagt agcagctcac caacttgaag
      841 gtggctggca agaaggtgga aaagggattt ctgtagcaga tgtgatgact gctgggagac
      901 acggggtacc tagagaaatt acagctggcg tattagaagg aaaatattat ccgaatcatg
      961 aagcgattga tttctatcat cgttacaaag aggatattgc tctctttgct gagatggggt
     1021 tcaagtgttt ccgtacctca attgcatgga cacgtatttt tccaaaagga gacgaattag
     1081 agccaaatga agctggtttg cagttctatg ataacttatt cgatgagtgt ttaaaatatg
     1141 ggattgaacc tgttgttacc ctatcacact ttgagttgcc ttatcatctg gtaaccgagt
     1201 atggtggttt tagaaaccgt cagacaatta atttctttgt ccgttttgct gagacctgtt
     1261 tccgtcgtta caaggataag gtcaaatact ggatgacctt taatgagatt aataatcaag
     1321 caaactatca ggaagatttt gcaccgttta ctaactcagg tatcgtttat caagaaggtg
     1381 aaaatcgtga agcagttatg tatcaagcgg cccattatga attagttgcc tctgcacgcg
     1441 ctgttaaaat tggacatgaa attaatcctg actttcaaat tggttgtatg attgccatgt
     1501 gtccgatata tcctgcaacc tgtaaaccat cagatatttt gatggcacag aaggcgatgc
     1561 aaaaacggta ttactttgca gatgttcatg tgcatggttt ctaccctgag catatcttgc
     1621 gctactggga gagaaaaggt attagcgttg atttcacaga ggaagatcgc gaagatttgc
     1681 tagaaggaac agttgattac atcggtttct catactatat gagttttgct attgattctc
     1741 accgcgagaa taatcctcat tacgattatc ttgagacaga ggacttggtg aaaaatacct
     1801 atgtgaaggc ttctgattgg gaatggcaaa ttgacccaga aggattgcgc tatgcattaa
     1861 actggtttac agatatgtat catctgccac tttttatcgt agagaatggc tttggtgcga
     1921 ttgaccaagt cgaagaagat ggaatggtgc atgatgacta ccgtattgat tatcttggtg
     1981 ctcatatcaa agaatttatc aaggctgtcg atgaggatgg agttgacttg atgggatata
     2041 cgccgtgggg ttgtattgac ctggtgtcag cagggacagg tgaaatgcgc aaacgctacg
     2101 gttttatcta tgttgataaa gatgatgaag gaaatggtag ttatgcgcgt tctccaaaac
     2161 gctcattcgc atggtacaaa aatgtcatca caacaaatgg tgaggaagtt taatgagaag
     2221 acctctgtag cgtaatagct acatgggtct tcatttatgt tgttagtatt ggtatattaa
     2281 aggagaaaat tgtatggttg gttttatcgc agcttgctta actacctttg gatttgtacc
     2341 tcaggttatc aaggtagtta agacaaagga tacagagtcg atttcgttag gaatgtatat
     2401 gatgtctgtg gcagggatgt ccttatggtt gttccatggt attattcaag gagatacggc
     2461 cctcattatt gctaatagcc tatctgtaac attagcaggt attattttgg tctataaatt
     2521 agtctacaaa taatgcacta ttccatcgat aaaagaattt ttagcaacag tgaaaaacat
     2581 tgaaaatgct tgactttttc tgtgaaagga atataatgat gacaaataaa tattggaagt
     2641 gtgattacta tgttattcgt tccgcttttt tttaaggttt aaccttttta aaccaccaag
     2701 ataagcgttt tttctagttg tttgtaagtg tatcgtatct tggaaaagag gtttattatg
     2761 gaatctatag ttggaatagt tgtcattgta gttgttacgg ttgttctggt ttatttatta
     2821 actaatatgt ggaaaatcag agcggcttca gttggtcaaa cggatgacac tacgctatac
     2881 tttgtaagat ttaagggggt aaatccgcca gacttagcaa atagtagtgt ttttaatcaa
     2941 gtagccaaaa tcaaatgtgc taaaggagat acctatcaag tcacttcaac agtcaatgat
     3001 gtgaaactga gagacgtgat tatggatgaa tttcagctca aatcttctga ggttgtagtt
     3061 tactatcctc ctcgtctttt cttttatgca tcatagtcgc aactcttcgg agttgctatt
     3121 tttttgtttc tggagagtag cggaaaagcg gtttatttta gtagcgaaat ttccgtagtg
     3181 gtaaggaaat acttcctatg gaaaatgtaa gcgcgttcat gtaaaataaa atcataacaa
     3241 aagtaaataa taaaatagtt ggaggaaaat cctatggtaa aagctttgat tatctgtgca
     3301 ggaggcatgt cttcttcact tattgctaaa aaaacacaaa cacttttgga agaacaaggt
     3361 cataaagtag aaatgaacgc tgttggtgtt ccagaaggtg gtaaaaaaat taatgcggca
     3421 gagtatgact tgtacttaat tagcccgcag acaaaaatgc actttaagca atttgaagaa
     3481 gcaggtaaga aggttgggaa gccaattgtc caaatcccac cacaagctta tatcccaatt
     3541 ccgatgggaa ttgaaaaaat ggctaaattg gtcttggata atatctagtt ctttgctacc
     3601 atagatggta tattgattcg aaaagaggat agttatgcta agtactaagg aaaaaatgat
     3661 attgcagtat ctttaccaac accagaatat tttttcaacc agtaaagtat tggcagagca
     3721 tctctcttat acagatcgca caattcgaac ttatataaaa aaaatggcat ccgaaatatc
     3781 tgaggaagaa acaggttttg cgattttatc caaacaaggt tatggctatc agcttcgaat
     3841 tagcgatgag gaaaaatacc atcgtttctt atctgaaaac caactaatat ttggggtgga
     3901 ttatagtgat gcagaaaatc gccataaaca aatcctgaat aaattgatat ttgaagaaga
     3961 atgtatctta tttgatgatt tggcggacca gctgtttgtc agtagatcaa ccttgtctca
     4021 tgatttcaag cacattaggg agcatcttgc ttcttatggt ttgagcatcg agagtaagcc
     4081 ctataaggga gtctatgtgg ttggtgaaga acgtcaaaaa cgtcacttca tcatggacta
     4141 tttctttagt gagcattttt atcagaatat ccatcatttt ttatccaatg ataaaagtct
     4201 agccttacct ctatcttttg aagagctgac aattgtagtc ttagatgagt gtcgtgatag
     4261 tcagttgaaa ctatctgatt atattatcca aaatttagtt attcatttag gtttagctat
     4321 ccaacgctat caaaaaggtt ttataatttc tcctgtcacc atcgataagg aaaagtatgc
     4381 tgaagaattg gcagtagcta caaagattgc taggcgatta tcccatcgac tggaacctca
     4441 gaataggttt cctgaggaag aagtggtcta cattgctcta cacttgattt caaaaacaca
     4501 attggaggtg gagaagtcat cggaccgcct cttgttgcgc caagcacttt ttgaagtttt
     4561 agggcgttat gatgatgaat atggttatca attttcacat gatttttcct tgatagaagg
     4621 tttgctaaca catctggagg ttctcgtaga acgactccgt cacaatctcc atattgataa
     4681 ccccctactt gatgatatta aaacaactta tcatgatatc ttcgatttga cacaatcact
     4741 aatggctgaa ctttccgttt ttcactctta tagcttgtcc gagtcagaaa ttgcctatgt
     4801 agctctacac ttgatggctt ccttggaacg gcaaaaagaa aaatacaaac taaatgttct
     4861 ggttatctgt gcaacaggct acggtagtgc tcagatgctg aaaaatagga ttaaaaatga
     4921 acttgggcaa caggtgtcca tatcagatgt catcggttac tatgatttag ataatcaaaa
     4981 gttgcagggg gtagatgtga taatgtcaac catcgactta tctggtttgg tgtttaaggt
     5041 ccctgttata actgtcagtg tctttttaac ggatcaggaa gttaaggaag ttaaacaacg
     5101 attggcggac ttgagaccta gtctccaaaa aacacaggta gtggaaagag agagtaactt
     5161 ggagaaatac tttgatcagt acttctcaga acaacgattt ttagttgttg agtcagctga
     5221 aaaagaaatg ttattaaagc aaatgatttc acagttggag agcgaaggtc ttggaaatca
     5281 ccaggaattt tataaattaa ttgaggcgcg tgaaagcttg agtacattgg tatttgataa
     5341 agatatagct gttcctcacc ccctaaaacc cattagcgaa aagcacatga tttctgttgc
     5401 ggttataaaa aatggtctat attgggaaga aggctatggg cagattagat tggttttctt
     5461 agtgagtcca tctatatata caaatgaagg tctatcaacc attaccaatc gattggtaga
     5521 tttggtagat ttaccagaag tcaagaaaga cataataaac tctcctgatt ttgaaacatt
     5581 caaacacgtt tttttacaaa gagaatagaa ggtgacatat gaatacagaa gaattacaaa
     5641 tggctgcatt tgggatcatc ctcagtagtg gcaatgcaag aagtgttatc cacaaagctt
     5701 ttgctgctat gagagaaggt gattatgata aggcagaaga gttattggaa gccgccaatg
     5761 ctgacatgct tgaagcccac cattctcaaa cgggtctcct acaggaatac gcaagcggta
     5821 ctgaagtgaa ggtagagatt attatggttc atgcgcaaga tcatttgatg acaacaatga
     5881 ctttacgtga ggtagcgctt gaaatgttag ctttgtatcg taaagttggt tagaaagagg
     5941 atatgggatg agtaagggaa tggcaagtaa aaagctacag aaaacaccag aacaattaaa
     6001 acaagagtct aaacgcaaaa gtcagctctt taatcgctat atgctgtttc gttatagttt
     6061 agcagtgttc ttctttgcaa atctatactg gcttctggtt caattatttc aaccaagttt
     6121 gtatctaatc ctgccctcgc ttatgctgat tgcaataatc attgcgacgg cagaacaatt
     6181 taagttgtat agtgctgagg agtctcgatt gacaaagaca gaatttgtat taagggcaca
     6241 agcaatcttg caagggttaa ttgtggtttt agtgattttg ggtcatatct caaccctctt
     6301 tccaactttt tcaaatcata tatctgctaa actctttgtt attgccttgc agttgttagg
     6361 tcttgcttta gttgttctca atataaaaag gttggagcag gtaaggcaaa atacggataa
     6421 atactaccta cgttttcaaa taataagaaa atatctttaa aattttagga ggtcttctca
     6481 tggaagaaca aaaagggttc tttggactat tagataaata tctgatggga ccaatgggta
     6541 aactggcatc ttacaaagtt gtacgtgcca tcacagctgc aggtatggct gccgtaccat
     6601 ttacgattgt tggttcgatg ttcttggttt tcagtatctt accacaggca ttttcattct
     6661 ggccaatcgt ttcagatatt tttgcggcat cttttgataa atttacccca ctctatatgg
     6721 ttgccaatac tgctactatg ggggtgctat cactttattt tgcacttgct attggatatg
     6781 aattgacaaa aatttatgct gaggaagaag agttaaatct aacacctttg aacggtgccc
     6841 ttttatcact tttcgctttc ataatgactg tgccacaaat tatctttgaa aatggtgcta
     6901 tgtcagcagt tacttcactt aaagaaggtg cagtaattgt tgatggttgg gcaatgggtg
     6961 gtggcgtaac acgctttggt acaacaggta tatttacggc aatcatcatg gctgttgcgg
     7021 cagttctgct atatcggatg tgcgtgaaaa ataattgggt tatcaaaatg cccgattcag
     7081 taccagaggg tgtatcacgc ggatttacag ctttgattcc ttcatttgtc gtagccttct
     7141 ttgtaatttt cttgaacggt gtattggttg cgcttggtac tgatatattt aaagttattg
     7201 caattccatt tagctttgtt ggaaatttaa caaatacttg gattggttta gttattatct
     7261 acttgttgac tcaggcactt tgggtagtag gtattcacgg tgcaaatatc atctttgctt
     7321 ttgttagtcc aattgcactt gcaaatatgt ctcttaatgc agctggtgaa cgaatgattg
     7381 ttgcaggtga gttctcaaat atgtttgtca ttgcaggtgg ttctggtgca acacttgggc
     7441 tatgtatttg gttagctact cgtgctcgtt ctgaacaatt gagtgcgatt ggtaaagcag
     7501 caattgttcc gggtattttt aatatcaatg aaccattaat tttcggttta ccaattattt
     7561 ataatcctgc tctagcaata ccatttatgc ttgcaccaat tgcatctatg acggtatatt
     7621 acttctctat gaagttgaat cttatcaatg cagttgttgc tcaagtacca tggccaactc
     7681 cagttggtat tggtgccttc cttggtacag ctgactggcg tgcaattgtt gtttcaattg
     7741 tttgtgcagt tgttgccttc cttgtttact atccattcat tcgtgcatac gataaacagt
     7801 tgctaaaaga agaagcggca aatgcttaaa ctagagaaac tccttgactt cttctaagtc
     7861 caaggagttt ttctataaga gaatatcagg agacattgtt agataaacat aagatagtat
     7921 catatttgct ttcttctttc taaatcagag gagctgaggt agggcaagag aagaagattt
     7981 tttatagctg acttgatgaa gcgactatca atacatatgg aggcttaaaa atatctctac
     8041 tacttttgct aatactgatc gagagaaaac ctctcccttg ttccaagttt taattgggat
     8101 attatctaat gttttaagaa tagtgataat tggaaatagc atagaatagt atcagtttgg
     8161 catattatca cgtaggaatg aagggggttc ttttgctatt atatagctaa taaagtcaga
     8221 aggagtattg tgctatgaca aaacaatttc caaaaggatt tctttggggc ggtgcaacag
     8281 cggccaacca atatgaaggt ggttggaatt tgggaggtcg tggtccagcc acttccgata
     8341 cctatatagc ggtcgatcca gataagcgga aggatatgag tcactttggt aagcctgtct
     8401 cgcgggctga tgtggaattt gccttggcag atcaagaagg actctaccca aaacgttggg
     8461 gttctgattt ctatcatcgc tacaaggaag acatcgccct ctttgcagaa atgggcttca
     8521 agaccttccg cttgtcgatt gcctggtctc gtatttttcc aaaaggagac gagttagaac
     8581 cgaatgaaga aggactggcc ttttatgatg cggtcttcga tgagctgaat aaatatggta
     8641 tcgagccact ggggacccta tctcactatg aatttcctct tcatcttgct ctagaatacg
     8701 gtggctggaa aaaccgtaag gtcatagagt tctttgttcg ctatgccgag acagtattca
     8761 aacgctatca gggtaaagtt aagtattggc tgacttttaa tgagatcaat attttgggca
     8821 tggttggtta tctatcaggc ggtcttctct tcgaagacgg aaagaatgac ctagaagcca
     8881 tgtaccaagc agttcaccat cagtttatcg cttctagttt ggcaacaaaa gctgcccatg
     8941 aaattgaccc agaaaacaag gttggttgca tgctggcacg gatggagaac tatgcagcca
     9001 cctgcaatcc agacgatgtc ttggcggcct tgaaaaaaga ccaggaaaat ctcttctata
     9061 cagatgtgca ggtgcgtgga gcctacccaa gttatatgaa acgcttcttc aaagaaaaca
     9121 atatccaggt cgtgttcgag ccgggagacg aagcgatttt gaaacaatat cctgttgatt
     9181 tcatgagttt ttcttactat atgacatcca tcacccgtgc tcttccagac aaggacaagg
     9241 caacggcagg taatttgata ctaggagagg ccaatcctta tctggaagcg tcggactggg
     9301 gctggcagat agaccctgtc ggacttcgta tcaccctcaa caagctttat gaccgttacc
     9361 aagttcccct cttcatcgtg gaaaatggtc tgggagcctt ggataaggtg gaggcagacg
     9421 gcagtattga ggacggctac cgtattgcct acctagaaaa acacatccag caaatgtatg
     9481 aagctattga agacggtgtg gaacttatgg gctatacccc ttggggctgt atcgatctgg
     9541 tttctgcttc aaccagtgag atgtccaaac gctacggctt tatctatgtg gatgcggacg
     9601 atcaaggaaa gggcagtttt gaccgatcac ggaaggcatc attctactgg tataaagatg
     9661 tcattgccag caatggagcc aatgtattga cagaaaaata ggaggtctta tgacaaaaac
     9721 gatttatctc atgcgtcatg gtgaaaccct ctttaatacg caaaaacgag tgcagggttg
     9781 gtcggattct cccttgacag aacgtggtat cgctcaggcc caagccgttg gtcagtattt
     9841 taaggagcag ggaatcgtct ttaccagtgc ctattcttcc acgcaagaga gggctactga
     9901 tacactaaaa ttagttacgg atgctcccta ccaacagctc aaggggctca aggagatgaa
     9961 cttcgggatt tttgaagcca gagaggaaga attgcttccc aagcaccgtc caggtgctcg
    10021 ctctttcgaa gacctcttgg ttccatttgg aggcgaggat attcgagcag ttggaagtcg
    10081 tgtcaaagaa gcgattctct ctgtcgcgga aagcgatcca gctgatccaa tcctcatggt
    10141 cagtcatggt gcagccattt ggggattggt gcaggttttg gaggtcacct tcccaccagg
    10201 cgtcttcctg cctaactgtg ccatttgcca gctgactgtt gaaaatgagc aaatacgatt
    10261 tgaaaaactg attgattccg cacatgattt taaggtttat gattttaagt aaggaggttt
    10321 agtatgaact atctttactt gatgcgccct ggacaaactc ggtttaatca acaaggtcgg
    10381 attcaagggg cctgtgattc tcccctgaca gaactgggaa gagagcaagc actagctgct
    10441 caccagtatt ttcaagagca agggattgag ttcgataaaa tctattcttc aacccaagaa
    10501 cgtgcctgtg atacggcaga attggtcaca gggaggacgg attatatccg cttgaaaggg
    10561 ttgaaagaac aggatttcgg agccttcgag ggtcaacagg aatacctcaa tcctccctta
    10621 cagggagaca ttggctacgg tgattatttt gtcacctttg gaggcgaatc ctatcaagat
    10681 gtccgacaac gaatggtcga aaccattggg ggcatcatgg aagaagcaga caatcaatct
    10741 gttttagtag ttagccatgg agctgccata gcccaatttt tcaggcaggt attgacagat
    10801 tatccgcaag ttcggatgcg taattgtgcc atactgactt ttacttatga agacggtcac
    10861 tacgatttgc aaagcattgt ggatcccgtt aataaagaaa atctctatca aaaagaagga
    10921 aaggaaaagg agaaaaaatg acagtaacaa aagtatttcc aaaaggattt ttatggggtg
    10981 gtgcaacagc agccaaccaa tgtgaaggag cttacgatgt agacggacgt ggacttgcca
    11041 atgttgacgt agttccaatt ggccaagacc gagctgccat tatcactggt cgtaagaaga
    11101 tgtttgactt tgaggacggt tatttctatc cagccaagga gtctattgat atgtatcatc
    11161 acttcaagga ggatattgct ctctttggtg aaatgggctt taagacctat cgtctttcaa
    11221 tcgcctggtc ccgtattttc cctaagggag acgaattgga gcctaatgaa aaaggcctgc
    11281 aattttacga ggacttgttc aaggaatgtc acaagtatgg tattgagcca ttggtgacca
    11341 tcacccactt tgactgcccg atgcacttga ttgagaacta cggtggctgg cgaaatcgta
    11401 aaatgcttga attttacgaa cgcctttgcc gtaccctctt cacacgctac aagggcttgg
    11461 tcaaatactg gctgaccttc aacgaaatca acatgattct ccacgcacca tttatggggg
    11521 caggtctgta ttttgaagaa ggcgaaaatg tggaacaggt taaataccag gctgcccacc
    11581 acgagcttgt tgcctctgcc attgctacta aattagccca tgaaatcgat ccggaaaaca
    11641 aggtcggttg tatgttggct gcaggtcaat actacccaca cacctgccac ccacgtgatg
    11701 tatgggaagc tctgcaagaa gaccgtgaga actatttctt tatcgatgtt caggcacgtg
    11761 gctattatcc aaactatgcc aagaagaagt gggagcgtgc aggtatcgag attgaaatga
    11821 ccaaccaaga cctagcactc ctgaaagagc atacggtgga ctttatttcc ttctcttact
    11881 actctagccg tgtggcttct ggagatcctg tagagaagga aaaaacagca ggcaatatct
    11941 ttgcttccat taaaaatcct tacctagacg catcagaatg gggctggcag attgacccgc
    12001 tcggtttccg cattaccatc aattccatat gggatcgcta tcaaaaacca ctctttgtgg
    12061 ttgaaaatgg tctgggagca gtcgacacgc cagatgaaaa cggctatgtg gaagacgact
    12121 accgtattga ctatctccgc caacatgtct tggcaatgag agatgctatt gtcgaagacg
    12181 gtgttgaact catgggctat accacttggg gctgtattga cctagtgtct gccggaacgg
    12241 gcgaaatgaa aaaacgctac ggcttcatct acgttgaccg tgacaatgag ggaaatggca
    12301 cactcaaacg ctctaagaaa aaatcatttg aatggtataa aaaagtcatc gctacaaacg
    12361 gagcggatgt gggataaaac acgagagaca ggtcttcgga cttgtctttt gttatcgttt
    12421 ccactataat aaaaattagt taacaataaa ggagttttgc atgaaataca tcgtaaacaa
    12481 cagcaatgat ccagcttata acattgccct cgaagcctac gctttcaagg aattaacaga
    12541 tattgacgaa atttttatcc tttggatcaa tgagcctgcc atcattatcg gtaagcacca
    12601 gaatgctatt gaagaaatca acaaggaatt cacagacgaa aagggcatcc atgtggttcg
    12661 ccgtctgtca ggtggtggcg ctgtctatca tgacctcaat aacctaaact acaccattat
    12721 ttcaaacaag gcagacgagg gagcttttga cttcaaaacc ttctccaagc cagttattga
    12781 tactctggca acactgggtg ttgaggccaa tttcacaggc cgtaatgacc tggaaatcga
    12841 cggaaagaaa atctgtggta acgcccaagc ctatgccaaa ggtcgcatga tgcaccacgg
    12901 ttgcttgctc tttgatgtgg atatgtcagt cctcgcaagt gccctcaagg tcagcaagga
    12961 caagattgaa tccaagggtg tcaagtcagt ccgtgcccgt gtgaccaata tcaacaacga
    13021 attgccagag aagatgacag tcttggagtt caaagatgct atcctcaacc agatgaagca
    13081 agaataccca gacatggacg agtatgtctt gtcagaaggt gacttggctc gtatccaaga
    13141 aatctgtgat acccagtttg cgacatggga ttggacctac ggtcaaacac cagaatacac
    13201 agtggagcgt agcgtgcgtt acccagctgg taaaatcaca acctacatca aggctgaaaa
    13261 atcagtcatc gaatctatca agatttacgg agacttcttc ggtatcggtg atgtatcgga
    13321 tattgaagac ttgctggtcg gtactcgtta cgagtatgca gatgtgcttg ccaaattgca
    13381 agaaatcgac accacgcact atttctcacg catgacaaca gaagaagtag caaaagcgat
    13441 tgtagcttaa tccatagggc tgccctttgt ttgggcagtc tttatttttt gtgaaaatgt
    13501 tttcggcaaa ctgttttcac ttgcacattt tctatattat ggtataatta ttttctgtga
    13561 gtatccctca cttactcgtg gctagaccat gagtcattag accaaaagga ggaacatatc
    13621 aatggctaaa tacgaaattc tttatattat tcgtccaaac attgaagaag aagctaaaaa
    13681 cgctttggta gcacgctttg actctatctt gactgacaac ggtgcaacta tcgttgaatc
    13741 aaaagcatgg gaaaaacgtc gccttgcata cgaaatcaaa gatttccgcg aaggtttgta
    13801 ccacatcgtt aacgttgaag ctaacaacga tgaagctctt aaagagtttg accgtttgtc
    13861 aaaaatcaac ggcgacattc ttcgtcacat gattgtcaaa cttgacgcgt aagaaggtgt
    13921 tgtatgatta ataatgtagt attggttggt cgtatgaccc gtgatgcaga acttcgttat
    13981 actccgtcta atcaagctgt tgcgactttt actttggcgg ttaaccgcaa ttttaaaaat
    14041 caaaacggtg agcgtgaagc ggactttatc aacgtagtca tttggcgtca acaagctgag
    14101 aatttggcga attgggctaa gaaaggtgct ctaattggtg ttacaggtcg tatccagaca
    14161 cgtagctatg ataatcagca agggcaacgt gtctacgtta ctgaggtagt tgcagaaagt
    14221 ttccaactct tggaaagccg tactgcccgt gaaggtcaag gtggaggcta ttcagctggc
    14281 aactcgtttg ctggaggaaa tgactataac tcgccttatc aagcgcctgc acaatctaca
    14341 ccaaacttcg ctcgagaaga gagtccattt ggagcaagta atccaatgga tatatcagac
    14401 gatgacctac cattctaggt caaaaattaa taatataaag gagaacacac atggctcaac
    14461 aacgtcgtgg cggtttcaaa cgccgtaaaa aagttgacta tatcgcagct aacaaaattg
    14521 aatatgttga ttacaaagat actgagcttc ttagccgttt catttctgaa cgtggaaaaa
    14581 ttcttccacg ccgtgtaact ggaacttcag ctaaaaacca acgtaaagta acaacagcta
    14641 tcaaacgtgc tcgcgttatg gctcttttac cattcgtaaa cgaagattaa aaaaatggtc
    14701 cagtggacca ttttttcatg agctcgaaat taagaaagcg aattaagtcc ttgaatggac
    14761 tgttttttca cgagcatgaa aataagaaag cgagtaatgg tccagtggac cattttttca
    14821 tgagctcgaa attaagaaag cgaattaagt ccttgaatgg actgttttaa ccctagccaa
    14881 gaagttagaa agcgaggcac agtctgggga tagactgttt cagcagatta catagacaag
    14941 tgacagcgga taaagttctc gggcgatttg atagctgaac tgtatagata aacaaaagcg
    15001 actggaattc caatcgcttt gttttattat tgaactgggg acatggcatt gcgaatgtta
    15061 tatttctttt tcaggaggta gcgtgcaccg aaagcagcag ctccgataag aatagtaaca
    15121 agcggaggga gaacagggtt aaatgcggcc ggaatcagtg ctgccagaat gaaaacgact
    15181 gaccaagcca gcgtagcaag tccgagaaaa gcgatagctt tcagcaattt aggacgttgc
    15241 ccagttttaa tttgttctct gtaaacgaaa tggtacatca agtacatccc tgcaccaaca
    15301 ccgaaaccga tgacaaataa ggttaatagc ccatactgtg caccttgacc aaaaagattc
    15361 atcaaaccat tgataccagc aataattgca agcatgaaaa gactagaatc tagccacatc
    15421 aaccatggat tttcattgta ttccacttgg tctttctttt cctgttcaga aattgtctta
    15481 ctagcagccc actcacttgg tgctccatag agattgcggg cagtcacacc agttttttgc
    15541 ttttcaatga tagttggtaa aatttcttcc aagagttctt tgatttcgct atcagacttt
    15601 ccatctttaa tcagttggtt ggtcgcaata tggataaatt cttggttctt ttttgttaat
    15661 ccgttgattt ctataaatga catgttaatc tccttaggtt aaaaccatct cttacggatg
    15721 aagtagaagg tgagtgatag gctgatcgca aatgcgaaga ggataatcca ccaaaaagca
    15781 tagggaatat cgttaaaagg aatgatgttg tccttaaagt tcataccgta tgcagagaag
    15841 accatggttg ggatagagag aacgattgtc actaatgcca aggttttcat gatggtattc
    15901 tggttgttag aaatgataga agcaaaggca tgggtcatag agttcaggat ggaaccatag
    15961 atgtctgcca tctcaatggc ctgttgggtt tcgaccaagg tatcttcaag caaatcctca
    16021 tcctcttcat acttacggag tagacgtgag gaactagcaa gttttttgac caaacgctca
    16081 ttggttttga gggaagcctt gaagtagacg atggtttttt ctaattccat gagtacaatt
    16141 aattcttcat ttcgagtggc ttcatggagt tgcttctcaa tctcttcgct ctttctgtca
    16201 atggtccgta gggctgacaa gtagagttga gcatttcggt agagaatttg gaaaacgaaa
    16261 cgagacttca tgaaagtgaa gaaattccgt agacgacgat ggataaactg ctcaaacagt
    16321 ggcaatggtt ccaaacaagt cgtgataatc gcatcatctg ttagaataat tcccaaagga
    16381 atagtaatat aatatgtctt gttgtttcgt tcttcaagaa ttgggacgtc gaccaggatg
    16441 agcgtatagt catcttcgac ggtgatacga gaggattctt ccgcatcgag cggtgctcgc
    16501 aggtcagcga tgtcaatttt atagtgctca gccacttcca tagactcgct ctgggagggg
    16561 ttgaccaaat taatccaagc ccctggttca aaggtttgga tttcttctaa atcagtcatg
    16621 gttgatagaa aaatttgttt catatctttg ccctcctttt atctttgttg cgttaacgca
    16681 acctctatta taccaaaaaa tgtgcagttt cggaaaggtt ttatatagaa atgtgatata
    16741 atatgtagac atttaagcga ataagttgta cggacttttc cttgttccgt ataccatagc
    16801 ttatagcctc ttaagaaagg aaatgaatgc gtgctaaaaa aactagcaaa aaagatacgc
    16861 agccgtttca gcttcagctg attacggatg tggatgctgt aaagtgcaaa tcttctcgtg
    16921 tgtttggcac acttcgcaga tttcctattt ttgtacggtt ttcttaacgt gagattttca
    16981 aaacgatatt ttttgaaaat cgagctaata caagatatag aaattgccca taggcagttt
    17041 cgtctggtga cgcggagtta atcgaccgtc accagttatc ttgtgaacgc acatatatct
    17101 agaaaggaat tgaacacgcc ctaaacgctg tgtgaaaaat tgctggtttc ttcatgttta
    17161 agcgtgtgga actggcttct gcgtcgtaga catctgtgct ttcttcggtt ttcgacctgt
    17221 gaaagcacta gttgtcttga cgggggtgcg tcttcgaaat cacagatttc ggacttaccg
    17281 cctattttca ccgtgcgttt tacgggctct gtatcttaga aaggattcga atgcgtgcta
    17341 aaaacctagc aaaaaagata aatcttctcg tgtgtttggc acactttgca gatttcctat
    17401 ttttgtacgg ttttcttaac gcacttatat catgttatgc aagaaaatat tgtgattcat
    17461 ggggcgcgtg cccataattt gaaaaatatt gatgtgacca ttccgcgtga gaagttggtg
    17521 gtggtgactg gtttgtcagg ctctggtaag tcgagtttgg cttttgatac cttgtatgcc
    17581 gaaggccaac gccgctacgt agagtccttg tctgcctatg ctcgtcagtt cttgggcaac
    17641 atggacaagc cagatgtgga ttccatagag ggtctcagcc ctgctatttc cattgaccaa
    17701 aaaacaacct cgcgtaatcc gcgttcgaca gtcggtacag cgacggaaat caatgactat
    17761 ctccgcctgc tctatgctcg agttggggtg ccttactgta tcaacgggca tggggcgatt
    17821 gcggcttctt cggtggaaca aatcgttgat gaagttttgg aattgccaga gcgtcaacgc
    17881 ttgcaaattt tggcgccgat tgttcgtaag aaaaaagggc aacacaagac tatttttgag
    17941 aaggtgcaga aggatggcta tgttcgggtt cgtgttaatg gtgatgtcta tgatgtgtcg
    18001 gaagtgcccg agttgtccaa gagcaaggct cataatattg aagtcgttgt cgatcgaatt
    18061 gtgataaaag aaggtattcg ctctcggctt ttcgattcta tcgaagcggc cctgcggatt
    18121 gcggacggct atgtcatcat cgacactatg gatgagaagg aactgctctt ctctgagtac
    18181 tatgcctgcc cagtttgtgg ttttacggta ccagagttgg agcctcgcct cttctctttc
    18241 aatgctcctt ttgggtcttg tagcgactgt gacggtttgg gtatgaagct ggaagtggat
    18301 atggatttga ttgtcccaga tgccagcaag accttgcgtg acggggcttt ggctccgtgg
    18361 aatcctattt cttctaacta ctatcctcaa atgttggagc aggccatgaa tcactttggt
    18421 gtagatatgg acaaaccttt cgaggaattg acagaagagg agaagaacct gattttcaac
    18481 ggttctgacg ggaaagaatt ccatttccat tatgaaaatg agttcggtgg ggtgcgtgat
    18541 attgacattc cattcgaggg cttgattacc aacattaatc gccgctatcg tgaaaccaac
    18601 agtgactata cgcggactgt tatgaagact tacatgaatg agctgacctg tggaacctgc
    18661 cacggctatc gcctcaatga ccaagccctg tctgtcaaag ttggtggcga gcagggactt
    18721 catatcgggc agttgtctga tttgtccgta gcggatcatt tgcaagtgat tgaacatctg
    18781 accttgtctg aaaatgaagc catcattgca acaccgattg tcaaggaaat caaggaccgc
    18841 ctgtccttcc ttaataacgt tggtctcaac tatctgactc tttcacgagc agcaggtacc
    18901 ctttctggtg gtgagagcca gcggattcgt ctggcgactc agattggctc taacctgtct
    18961 ggtgttcttt acatcttgga tgagccatcg attggtctgc accagcggga caatgaccgc
    19021 ctgattgcta gtcttaagaa aatgcgtgat ttgggaaata ccctgattgt tgttgagcat
    19081 gatgaggaca ccatgcgtga ggcggactgg ttgattgaca tcggtccagg tgcaggtgtc
    19141 tttggcggag aaatcgtggc ctctggaacg cctgcccaag tagctaagaa taaaaaatcc
    19201 attacaggcc aatacctgtc tggcaaacgt gaaattccag ttcctttgga acgtcgtgtt
    19261 ggcaatggtc gattcctgga ggtaacaggt gccaaggaaa acaacctgca agatgtgact
    19321 gttcgtttcc cactcggaaa atttgtggcg gtgacagggg tgtctggctc tggtaagtca
    19381 actctggtca attccattct gaaaaaagct attgctcaga aactcaatcg caattcggac
    19441 aagccgggca agttcaagtc catttcagga attgaacact tggaccgcct gattgacatt
    19501 gaccaaagtc cgattggacg gacaccgcgt tctaacccag ctacctacac aggtgtcttt
    19561 gacgatattc gggacctctt tgcccagacc aatgaagcca aaatccgtgg ctacaagaag
    19621 ggacgtttct cctttaacgt caaaggtggt cgttgtgagg cttgttctgg tgatggtatc
    19681 atcaagattg aaatgcactt cctgccagat gtctttgtac cttgtgaagt ctgtcatgga
    19741 caccgctaca attctgaaac cttggaagta cattacaagg agaaaaatat cgcccaggtc
    19801 cttgatatga cggtcaatga tgcggtcgag ttcttcaaac atattccgaa aattgagcgg
    19861 aaacttcgca ccattcaaga tgtaggcttg ggctatgtta cccttggaca acctgcgaca
    19921 accctatcag gtggggaggc ccagcggatg aaattggcat cggaacttca caagcggtcg
    19981 actggtaagt ccctctatat cttggatgag ccaacgacag gtctacatac tgaggatatt
    20041 gcccaattgc tcaaggtctt ggcccgcttt gttgatgacg gcaatactgt ccttgttatc
    20101 gagcacaatc tggatgtcat caagacagcc gaccacatta tcgacatggg accagaaggc
    20161 ggtgtcggtg gtggtaccgt tgttgcaaca ggaacgccag aagaagtagc tagcaaccca
    20221 gccagcttta caggccagta tctgaaaatg aagttgaaat aaaaagccgc ctctgcggct
    20281 ttttttctct atctgctagg aagaattggt atttgtctgt atttctgcta taatagttac
    20341 aaaatctttg gaggtagctt atgcaagcgc gtgtggaaaa atttgaggca aaattagccc
    20401 aatctgatgt ggatggaatc ttggtgactg gtcaaaacaa tatttactac ctgacaggtt
    20461 tttgggggac agaggcgact gtcttcatca gtggcaagcg tcgcttgttt gtgactgatt
    20521 cgcgttatac cttgatagcc aaggcatcag taaaaggttt tgatattatc gagagccgtt
    20581 ttgcccttga agagattgca aaggtgatta aggaagatgg gcttgaaaaa attggttttg
    20641 atagcgaggt gacctatggt ttctatcaaa gtctgaccag catttttgag ggttatcaac
    20701 tggttgctat gtcaaacttt atcgaagact tgcgcatgat taaagatgag aaagaaattg
    20761 cgaccattcg ccgtgcatgt caaatttcgg atcaggcttt tattgatgtt cttgacttta
    20821 tcaaaccagg tcagacgact gagatggacg tcaatcattt ccttgaccac cgcatgcgtc
    20881 aactcggtgc agaaggggca tcatttgagt tcatcgtggc atctggctac cgctctgcta
    20941 tgcctcatgg aagagcgtct gaaaaggtta tccaagctgg tgagaccttg acgctggatt
    21001 ttggttgcta ttaccagcat tatgtcagcg atatgacacg gaccatccat atcggtcatg
    21061 tgacagatca agagcgtgag atttacgatg tggtcttgcg tgccaataag gctttgattg
    21121 agcaggccaa ggaaggtgtc acctaccgcg agtttgacgc tattcctcgt gagattatca
    21181 atgcggcggg ttacggagcc aactttacac acggcatcgg tcacggtatc ggcttggata
    21241 ttcatgaata tccgtatttt ggaaaatctg acgagactat caaggcaggt atggtcttga
    21301 cagatgagcc tggtatctat ttggatgaca aatatggtgt ccgtatcgaa gatgacctat
    21361 tgattacgga aaacggttgt gaagtcttga cattagctcc caaggaattg attgtcattt
    21421 gagaaatttg acagtttgtg gtagaataaa gcgaataaat aaaatttgaa gaggtattca
    21481 atacaatgat tgaagcaagt aaacttagag caggtatgac cttcgaagct gaaggtaaat
    21541 tgattaaagt tttggatgca agccaccaca aaccaggtaa aggaaacacc atcatgcgta
    21601 tgaaattgcg tgatgtacgt acaggttcaa ccttcgatac aacttatcgt ccagatgaaa
    21661 aatttgaaca agctattatc gaaacagttc cagcacagta cctttaccaa atggatgaca
    21721 ctgcttattt catgaatact gagacttacg atcagtatga aattccagta gcgactatca
    21781 aagaagaatt gctctatatc ttggagaatt ccgatgtgaa gatccagttc tacggaacag
    21841 aagtgatcgg tgttactgta ccaacaactg ttgaattggt cgttgcagaa acacaaccat
    21901 ctatcaaagg tgcgactgtt acaggttcag gtaaaccagc tacgatggaa acaggtcttg
    21961 tagtcaacgt accagacttt atcgaagcag gtcaaaaact cgttatcaac acagctgaag
    22021 gaacttacgt atcacgtgct taatcgtttc ctcttaagaa aggagagcct atgacaacag
    22081 aatatcaagg cgagattgtt atcgcacctc gcgtccttga agtaattaca ggtattgctg
    22141 cagcgaaagt tgatggagtg cattcccttc aaaataagcg tgtagcagac agtttgtcaa
    22201 aaacatcgtt aaataaaggt gtttatcttg aaactgacga ggaaggtcga gtgactgcgg
    22261 atatttacgt ctatctagaa tatggtgtaa atgttcctgc cgtatcaatg gacatccaac
    22321 gtgcagtcaa gacagcagtt tataactatg cagaagttca agtggctgcg gttaatatcc
    22381 atgtcagcgg cattgttcct gataaaacac caaaaccagc attgaaagat ttattcggag
    22441 aggatttcct tgatgaagaa taatagacat gccctgcgta agtgtgcttt gcaggcaatc
    22501 gtatcacttg aatttggtca agaacctgtt caggcagctc agttttctta tctttatgat
    22561 agagaggaag agcaagaagg agttgaaatt ccgctctttc tccttaacct tgtcaatggt
    22621 gtagcagact atcgtgatga cttggataag gagttatcta gccgattaaa agcaggatgg
    22681 accttagacc gtttaacctt gattgacaag aatatcatgc gactaggcct atttgaaatc
    22741 ttacatttcg aagaaacgcc agaccgcgtt gctgttaacg aggctattga attggctaaa
    22801 gaattttctg atgaatcttc agctaagttt gtcaatggag ttttgagcca gtttattaaa
    22861 gaagaagcct gatgagcttc ttttttactt gagaaacaag agaatgtatc acaaaaaaac
    22921 tgcacctaat ttttattagg tacagttttt ttatatacta gctcctgcta gtaggctaat
    22981 cggtaggata tagtctgttt ttgtcagttt ttttccttcg attttatcaa ctaatagttc
    23041 aaccagcagg cgagctattt cggttaatgg ttgcttgatg gttgtcagtt gaggatagta
    23101 gttttcgatg aaactggttc catcataacc aatcaattta atatcttctg gaatagacag
    23161 tttcattgaa cgaatgacgt tccataccag catagccgtt gcatcgccag atacaaagat
    23221 accatctggt ttttgctttt caagaatggc tcggatttcc atctccttgc gcacaggtga
    23281 gaaatcactg gagatatgaa aaacttcggc tttgttcaaa atagatgtga aacctacttg
    23341 gcgaaggccg gtaggtgaat tggaatcatc gttccccgta atcattaatg gattgtgaca
    23401 tcccgctttt tgtaaggttt gggcagctaa taccccgcca gcaaaattat cggaagagac
    23461 aatggggatg gaaggagaga ggttgcggtc aaaagcgata attggagcta cgacacggtc
    23521 gtagtcttgg ataccgagat tgtgactgcc cgagataatc ccatctactt ggttagctgc
    23581 taacatttct agatactcac gttccttatc ggactcgtgc tggctattgc aaataatggt
    23641 tttatagcct cgatcaaaaa gctctttttc taaatggcta atcaattcag aataaaaaat
    23701 attgtttatt gttgggaaga tgagaccaac taattttgca gatttacctt gcaaactacg
    23761 agctaaatta ttaggtttgt agcccagttc acgcatagcc tcttcgacat tgcgaatggt
    23821 tttttcagat aggtatcctt ttttattgat aacgcgcgag acagttgttg ggctgacccc
    23881 agctaactgt gcgacatcag ttagttttgc gaccataatc taaatggtag taggttccgg
    23941 tcggattacc agtcgtaatg acgataccag actgatccgc atcagggaag acacgaccag
    24001 aaaatacttt ctctccttta ttgataaaga tttcaaagac agatttgtcg atgaagatat
    24061 tggctgtgag agctcctgga gaaatctcgc aagagcgact tgtaccgaaa tcgagtgcga
    24121 atggctgacc acagttgccg cggtccaatg taatctggcc ttgttcagtg tccacagaca
    24181 agaccaagcc tttttctgct tcatttgcga acaatacgat ttcgtgcttc gtgcccgctg
    24241 aaaaatcaag ttccaattcg taaacattat tagtttcttt ttgggctgaa aatggctgag
    24301 cttctttacg aagactggtg atcgcatcaa ctggatactg gtagagctta ccgtccttga
    24361 tggttaattc tttaaccaat gacagacagc cttggtagtc ataagcatcg gttgggtatt
    24421 ccacatctgg aagtgccaac cagctaacag atagagttcg accgtctggt gcattaaagg
    24481 cctgggttgc atagcactca aaaccatagt ccagattgat caattcgctc ggttcgacaa
    24541 tgcttgctgt ttcaggatcg aaactctgac caatcttgta catatttgga tagatattgc
    24601 tatagtccaa tacctctttg tccaagcctt gtggacagta gagaaggatg ggttgctcac
    24661 cgacgaacgc aatatttggg cattccatca tataagcggt catatcattg gcaaaatcaa
    24721 ggtcaccaac ataggaccag ttgaggtagt cgttattttc agctttataa agtttgacaa
    24781 ttcccttttt atccagattt tgtccaccga caatagcgta atattgccct ttatagttga
    24841 aaatttgtgg atcacggaaa tggtccgtgg tatcttctgg ttgctcaatc aagactttat
    24901 caatcttttc aatcttacca tctttatcca tcaaggcacc gatttggtat ggatggcgaa
    24961 cccaattttc atcgcggaca tttccagtat agaagaggaa gagcttgtcg ccaaattcca
    25021 tggcagatcc agagtaggca ccgtggctat caagtggtgt atctgggtac ataaccgtac
    25081 cagttttttc aaaatggacc aaatccgttg attctgtatg gacccaagat tttaatccgt
    25141 gcgcagcacc gaatgggaag tattggtaaa aaagagtcca ctttccatta aaataagaaa
    25201 atccatttgg atcatttaac agtccatgtg gtgtttcaat atggaaattt gtcctccaag
    25261 gagaattctc tgtattcttc tttatttttt caatatattc gggtgtccag tcagcataag
    25321 ctctgtaacg ctcctctgtc gtaaatgcca taattttctc caaattttct agtttttcat
    25381 taatatagta aacgttttct tgcaaaaaat caagttttaa caatgttttt tgataaaatt
    25441 taaataaaat gtgataaacg tttgacat
//
LOCUS       DASGBY010000014        25408 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.014, whole genome shotgun sequence.
ACCESSION   DASGBY010000014 DASGBY010000000
VERSION     DASGBY010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 25408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25408
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.014"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(91..696)
                     /locus_tag="U1396_000458"
     CDS             complement(91..696)
                     /locus_tag="U1396_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000974722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM5341673.1"
                     /translation="MAIILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALE
                     KHPEIGEDLVALLSDVEQIPADIRQALINNGGGHLNHALFWELLSPEKTEISAELAAD
                     IDATFGSFDAFKEAFTAAATTRFGSGWAFLVVNKEGKLEVISTANQDTPIMQGLKPIL
                     ALDVWEHAYYLNYRNVRPNYIKAFFEVINWDKVNELYKAAK"
     gene            complement(809..1840)
                     /locus_tag="U1396_000459"
     CDS             complement(809..1840)
                     /locus_tag="U1396_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM5341674.1"
                     /translation="MTVIEQIEKLKKEKLELLTVLCGEDIGQYQIAKDLLLRKLDFDA
                     ADLGFAYFDMSEADYHQVDLDLVSLPFFSDEKVVILDYFADLTTDKKRHLTDDELKQF
                     EVYLENPVETTCLVILAPGKLDSKRRLVKLLKRDGLVLEANPLKEMDLKNHFQKEIMR
                     LGLQMGGEVFQYLLEKSNFDFAEISKNLVFLQSYKGKETIEISDIDAAIPKTLQDNIF
                     DLTQLILQSKVDEARNLVRDLRLQGEEEVKLIAIMLTQFRTYLQVQILLEQGRGEQQI
                     VAELSTIMGRKVNPYQVKYALRDSRHLSIGFLKKVVKLLIDTDFQIKTGQFDKDYLFD
                     LLLLKIATA"
     gene            complement(1990..2580)
                     /locus_tag="U1396_000460"
     CDS             complement(1990..2580)
                     /locus_tag="U1396_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341675.1"
                     /translation="MKLRKVSFILVTFVIGLLSLSSVKAETSMFVPVGQQNVPGVEVA
                     PFRTGSDSIHVHVGSFGYVATYINGERLKVEPVKHELKCPSYTTENCQTKEWYTSGER
                     ADGSGDYVVKLNKKLEEGDVVTLKFADDGNLYFGQLVYKSEKKRVEQTQKEQEDEYAD
                     ALFKRSIEEEENKTWRDRIKDTFQDAWWNFKGWWNS"
     gene            complement(2688..3443)
                     /locus_tag="U1396_000461"
     CDS             complement(2688..3443)
                     /locus_tag="U1396_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEM5341676.1"
                     /translation="MIKVEEILSTLSPNQKVNYDKVFQKMASTWQEAGLRPKILMHVC
                     CAPCSTYTLEYLTQYADVTIYFANSNIHPKAEYQRRAAVTAQFVKEFNQKTGQSVGYL
                     EADYSPQEFFKKTQHLANEPEGGDRCKVCYDYRLDKTAEKAVELGFDYFGSALTISPH
                     KNSQTINAAGIEVQKLYGTQYLPSDFKKNGGYQRSVQMCEEYDIYRQCYCGCVYGANA
                     QGVNLVQVKKEALEFLKTHRDYSHIPFKVLDKN"
     gene            complement(3690..4400)
                     /locus_tag="U1396_000462"
     CDS             complement(3690..4400)
                     /locus_tag="U1396_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000062217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341677.1"
                     /translation="MAMLEVKNLSVNYGVIEAVKDVSFEVNEGEVVTLIGANGAGKTS
                     ILRTISGLVRPSAGTISFLGNEIQKVPARKIVADGLSQVPEGRHVFAGLTVMENLEMG
                     AFLRNNREENQANLKKIFARFPRLEERKNQDAATLSGGEQQMLAMGRALMSQPKLLLL
                     DEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAIADRGYVLETGKVVLSG
                     TGKELLASEEVKKAYLGG"
     gene            complement(4400..5164)
                     /locus_tag="U1396_000463"
     CDS             complement(4400..5164)
                     /locus_tag="U1396_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341678.1"
                     /translation="MALLEVKDLTKNFGGLTAVGDVTMELHEGELVGLIGPNGAGKTT
                     LFNLLTGVYEPSEGTISLAGTILNGKAPSKIASLGLGRTFQNIRLFKNMTVLENVLIG
                     LGNHGKSEVFASFFRLPAFYKNEEALKTKAIELLKIFDLDGDADTLAKNLPYGQQRRL
                     EIVRALATEPKILFLDEPAAGMNPQETAELTQLIRKIKEEFGITIILIEHDMSLVMEV
                     TERIYVLEYGRLIAHGTPEEIRNNKRVIEAYLGGEA"
     gene            complement(5164..6111)
                     /locus_tag="U1396_000464"
     CDS             complement(5164..6111)
                     /locus_tag="U1396_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM5341679.1"
                     /translation="MKQNLKVNAIWLAILLAGFGLIQGLVSAGILNFYYIQIVQQIGI
                     QIILAVGLNLIVGFSGQFSLGHAGFMAIGAYAVGILGKMMPTYGGFAIALIVGMLISG
                     AVALLVGIPTLRLKGDYLAIATLGVAEIIRILIINGGSVTNGAAGIMSIPLFTSWPLV
                     YIFVIITTLVTVNFLRSPMGRATISVREDEIAAESVGVNPTFVKVSAFVFGAMTAAIA
                     GGLHAGYVGTIVPKDFAFMTSVNVLIIIVLGGLGSITGTFVAAIVLGILNVFLKSYSD
                     ISMIIYSLALILLMIFRPGGLLGTKEFSVAALLKKKEVK"
     gene            complement(6114..7001)
                     /locus_tag="U1396_000465"
     CDS             complement(6114..7001)
                     /locus_tag="U1396_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM5341680.1"
                     /translation="MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDLYMMGA
                     FMGYFLLNNLNFIADGGTRFFVALILAMVGTAILGVVIEFLAYRPLRNSTRIAALITA
                     IGVSFFLEYTMIKFFTADVKAFPQAIEAVTFNLGPVSVTNIQLIILGVSLALMVALQL
                     IVKRTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLLGLYYNQIE
                     PLMGMTPGLKAFVAAVLGGIGIIPGAALGGFVIGIIETFTYVIEFDTFRDAIVYTVLI
                     IILLVRPSGILGKNVKEKV"
     gene            complement(7207..8376)
                     /locus_tag="U1396_000466"
     CDS             complement(7207..8376)
                     /locus_tag="U1396_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5341681.1"
                     /translation="MKTRKFAVALATFASAALLAACGNVSTTNTSAAGSSVGDTFKIG
                     YNLELSGAVSSYGQTEEKGANLAVKEINAAGGIDGKKIEVITKDNKSETAEAATVATS
                     LASEGANVVIGPATSGASAASIPALTSAGVPMITPSGTQTNLVVNDKGEVQEYFFRTT
                     FTDGYQGQIMAKYATENLSAKKVVLYFDNSSDYGKGVAEAFKKAYTGEIVSEITFASG
                     DKDFQAALTKLKDKEFDAIIMPGYYNETGTIVKQARGLGIDKPILGSDGFDSPQFTEL
                     ATASAASNVYYLSGFVTSASEKAKAFYDAYVKEYNEEPSMFSALAYDSVYMAAEAAKG
                     AADSAAVKANLAALKDFKGVTGTMSVDKEHNVIKSVYVVSLTNGEESSVDTISID"
     gene            complement(8507..8779)
                     /locus_tag="U1396_000467"
     CDS             complement(8507..8779)
                     /locus_tag="U1396_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HEM5341682.1"
                     /translation="MFEKKNRTCLTVYLHYNRDARKLSQYGDIVYHSKRLRYVLVYMD
                     QELVEATILKLKKERFVKKVVPSYIKELDQNFVGNLWRDEEPSVVG"
     gene            complement(8906..9496)
                     /locus_tag="U1396_000468"
     CDS             complement(8906..9496)
                     /locus_tag="U1396_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEM5341683.1"
                     /translation="MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIA
                     QLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIA
                     SSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
                     TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK"
     gene            complement(9613..10242)
                     /gene="upp"
                     /locus_tag="U1396_000469"
     CDS             complement(9613..10242)
                     /gene="upp"
                     /locus_tag="U1396_000469"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEM5341684.1"
                     /translation="MGKFQVISHPLIQHKLSILRRTSTSTKDFRELVNEIAMLMGYEV
                     LRDLPLEDVEIETPITKTVQKQIAGKKLAIVPILRAGVGMVDGLLSLVPAAKVGHIGM
                     YRDEETLQPVEYLVKLPEDIDQRHIFVVDPMLATGGSAILAVDSLKKRGASNIKFVAL
                     VSAPEGVKALQEAHPDIDIYTAALDEKLNEKGYIVPGLGDAGDRLFGTK"
     gene            complement(10322..11938)
                     /locus_tag="U1396_000470"
     CDS             complement(10322..11938)
                     /locus_tag="U1396_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM5341685.1"
                     /translation="MPEIQKTDWWKKSVIYQIYPRSFQDSNGDGVGDIRGIISRLDYL
                     HELGIDAIWLSPVYQSPMDDNGYDISDYQGIAPEFGTMEDMEELIAEGHKRNIKIIMD
                     LVLNHTSDEHFWFQEALKGPDNPYYDYYVWADEPNELRSTFSGSAWEYVPHLNKYYLH
                     QFSVKQPDLNWKNPALKQEIWDMINFWIEKGVGGFRLDVIDLIGKEPEKLITADGPTL
                     HPLIQELNEKTFGAYDLVTVGETWSANPENSQLYSHPDRKEFSMIFQFEHVGLDQQEG
                     KEKWDLAPLDPARLHNVLSKWQTELVGKGWNSLFWNNHDLPRAISRFGDDRPAFRELS
                     GKMLAIYLHFMSGTPYIYQGEEIGMINAPITDISQADDIETRRMYAERIENGFTKEEL
                     ITSINAKGRDNARRPMQWTAEEGAGFSTGQAWLALGDTVKDINVEKALADKQSLFYTY
                     QKLIALRKEYPCMSEGKYEVMETGNSSVMAYRKYDEQDDFIILVNFSSQEQAYTIAVE
                     EYSIFMNNYENEEAINKGMLRPFEAIVFKK"
     gene            complement(12011..13459)
                     /gene="gtfA"
                     /locus_tag="U1396_000471"
     CDS             complement(12011..13459)
                     /gene="gtfA"
                     /locus_tag="U1396_000471"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM5341686.1"
                     /translation="MKIKNQAMLITYSDSLGKNLKDLKKVLEGPLKDVVGGIHILPFF
                     PSSGDRGFAPMDYTKVDPAFGDWSDIEALSKDYYLMFDFMINHISAKSPYFLDFLEKK
                     DQSAYADLFIRYKNFWPNGEPTQEDVDLIYKRKPRAPYRIATFADGSEEKVWCTFDEQ
                     QIDLDVTTETTRQFIQENLEQLAEHGASIIRLDAFAYANKKIGTNCFFVEPDIWEMLH
                     FPRQLLAPKDVEILPEIHEHYTIQQKIAEQDYYVYDFALPMLVLHALYSGHVNRLVHW
                     MEICPRKQFTTLDTHDGIGVVDVKDLLTDEETEETREALYAQGANVKKIYSTEAYNNL
                     DIYQINCTYYSALGNNDQAYLLARVLQCFAPGIPQIYYVGLLAGENDIELLESSKEGR
                     NINRHYYDLEEIEQEVQRPVVQSLFKLLKFRNTSPAFDGEFSVKMLDETSMEIFWNNQ
                     DAGVSARLTANLKEKSFEIVEIEEGKITTIEL"
     gene            complement(13529..14359)
                     /locus_tag="U1396_000472"
     CDS             complement(13529..14359)
                     /locus_tag="U1396_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5341687.1"
                     /translation="MNTQKQKNWWVYLVLFSGILFMFIPLLVTIISSFKPTKEITSNF
                     FGLPENFTLNNYERLFNDGIVQYFGNSALITIVAVGLILLVIPMAAFAVARQMKRQTV
                     FNFIYFFLIIGIFVPFQVIMLPMTKLMSSLGLNNIVGLIILYLTYAVPQALFLYVGYI
                     KTIVPEEMDEAAAIDGCDKFTMYWKIIFPLMKPMHATVLIINALWVWNDFLLPLLVLN
                     RDQSMWTLPLFQYNYQGMYFSDYGPSFASYVVGIIPILLVYLVFQKHIISGMTSGSVK
                     "
     gene            complement(14370..15242)
                     /locus_tag="U1396_000473"
     CDS             complement(14370..15242)
                     /locus_tag="U1396_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5341688.1"
                     /translation="MNQKGFIAKYWPYLFVAIPIGLQLIFFFYPLLTGIYYSLTDWNG
                     LTSDFSLIGIQNYLDILKNPDFYTSMTFTIIFTIGLVIGEIVIGIWLASLLNRKIKAV
                     GFFRTWYFFPAVLSTVTLGLIFVQLFNYGFTQIGELLHIDWLMENLLVQENTVIPAVL
                     FVALWQGLAMPVIIFLSGLQSIPEDVKEAAAIDGATRSQQFFNIELPFLLPSISMVFI
                     LAMKSGLTAFDLIFALTSGGPDGKTESLGLLVYNYAFVDNKFSYANALAVVLFIFIIV
                     ISLIQMRISKKFEI"
     gene            complement(15390..16628)
                     /locus_tag="U1396_000474"
     CDS             complement(15390..16628)
                     /locus_tag="U1396_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5341689.1"
                     /translation="MKFTTFVKSASVIAFASLLAACGNGSAGSSDKVELEYFSQKPEM
                     QATLQEIITDFEKANPDISIKFSSVPDAETILKTRMANNEDPDIINVYPVAADFDAWA
                     KDGRFLELGEDAGVGNLKEGAAEFYAIDNKIYSLPLNTNVYGIYYNKAKFKELGLEVP
                     KTTAEFEKLVATIKDKGETPFALSLADSWSLNGFHQLAWVSAAGGYDQAQDILVRSGK
                     GSITADNPATQAVVKSFELLHDNGQSGFSGAKYADAVAAFADGKALMMPQGSWAAAVI
                     NQQNADLDYGIFAFPGEKEGDDVTIGGADLALSISAKTEHPEEAKKFLAYMSSKEVMQ
                     KYYDVDGSPTSVEGVETEGKFPEIEGVAQYAFTDKQIAWLHKEWTSQNDFWTIAVETI
                     KDPKADKLANELNAFFDPMK"
     gene            complement(16882..17337)
                     /locus_tag="U1396_000475"
                     /pseudo
     CDS             complement(16882..17337)
                     /locus_tag="U1396_000475"
                     /inference="COORDINATES: protein motif:HMM:NF012475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
     gene            17576..18592
                     /locus_tag="U1396_000476"
     CDS             17576..18592
                     /locus_tag="U1396_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5341690.1"
                     /translation="MKQQKVTFADIAKHTNFSKTTISRYFNNPDSLTDASKQKIERAL
                     IELGYQENKLAKVLAKGKTEFIGIIIPNLFLHFYAAILEEILATYKKNNYKFLVFIGD
                     DNIETEREYIQELLAYNIEGLIVLSHTITSEELASYNVPVVSIERESQYISSIETDNY
                     LGAIQATGSLIKNNCDILIHINGKLKENIPAYNRVKGFETMCQDSDVEYRIFATDLGS
                     SYHQIQTELQHHFETIEANYQGKRKGIFFANDTYASIFVNILFQKYGHFPEDYRIVGF
                     DDSPIASETIIPLTTIRQDLKAISHTALEVLSQQIEERKKEIISPIQHREIAPKLIKR
                     STTF"
     gene            complement(18652..19884)
                     /locus_tag="U1396_000477"
     CDS             complement(18652..19884)
                     /locus_tag="U1396_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5341691.1"
                     /translation="MKMKTFLKCASVCAFASFLVACGNASSSDKVEIEYFSQKPEMQA
                     TLQEIINDFEKENPTIDVKFSNVPDAGTVLKTRMANNEAPDVINIYPQNADFKAYAAD
                     GRFLEIGDDAGLSHLKDGAVTPYLVNEKNYTLPLTANAYGIYYNKDKFKELGLEVPTT
                     YAEFVALVDKIKSDGSAAPFALSLNDAWSLNGYHQLAWVTVAGGFDGAEDILIRSAKG
                     AIQDDATTKAVLERLQLLKDNGQKGATGALYADAVAAFAAGDALMLPQGTWAATAVNQ
                     QEPEFEYGMFTFPGDKEGGDYTIGAADLALSISADTEHPEESKKFLEYLSRPEVIQKY
                     YDVDGSPTSVEGVDTEGKFEETAGVTQYAFTDKHVVWLQSEWESEDEFWNITVEMVKN
                     PNSAELVKKLNAFFDPMK"
     gene            complement(19897..22071)
                     /locus_tag="U1396_000478"
     CDS             complement(19897..22071)
                     /locus_tag="U1396_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM5341692.1"
                     /translation="MNVIEIYNEKQIFHLKTREFSYIIQVLETGDLVHRYFGKKIEKF
                     SDGNKITYLDRSFSPSPITGDRTYSLDVLPLEYSSNGLGDFRTSALDVRNEFGVTLDL
                     KYKEYRLYKGKKELRGLPASFGNQEEVESLEIDLYDQLTDITVTLQYSVFEEASYLAR
                     SATIQTGKYPCKLEKVLSATLDFPHQDFIVHSLAGRYAYEKEWTQTPLTKGQYSIGSI
                     RGASSHSRTPFLALASPDASEDKGDVYAAHLVYSGNFTAFVETTAMETSRLGLGLESH
                     YFSWQLDKDDRFQTPEVLLSYTDKGFTGMTQNSHHFITKHLIRSSFVNKPRPILINNW
                     EATYFEFTEEKILQLAQVASRAGIELFVLDDGWFGKRNNDESSLGDWKVNLDKLPNGL
                     NGLADRINELGMKFGLWFEPEMISIDSDLYREHPDWAIRTEGRLPIYSREQLVLDLTK
                     QEVCDYIIDSVSSILESANISYVKWDMNRNITNIPEGLANDQRFEFHHRYMLGLYRVL
                     DHLTKRFPDILFESCAGGGGRNDLGIMYYMPQAWASDDTDAIERLSIQEGTSLIYPTS
                     SIGAHVSAVPNHQVGRITPLATRGNVAMMGGAFGYELDLTKLSEKELDEISQQIETYH
                     SIRETIQFGQLYRLKKTSNTWAANYVSQDKNQAVFTFVKILAKPEAPLLHVRLKGLDP
                     DALYECPQLGETFYGDELLNIGLTMPHVQKDYFSVQYIFNKI"
     gene            22176..23015
                     /locus_tag="U1396_000479"
     CDS             22176..23015
                     /locus_tag="U1396_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5341693.1"
                     /translation="MNILNIYNELDSHNFDLNVDHYGAEQCDKGYSFGPTIRDNFVLH
                     FITKGRGKILVDGKTSYLAAGDLFILPKDVSIFYQADDIDPWTYIWVGFSGSRAKDLL
                     NQSQLLENYYLHSNLESPILGYMHQINHVQMHPIPSITELVLIGYLNQLLAALIEEFP
                     SETLIKPETQTKHYVQQAIKMIHNHYAHPIKVSEIADFLALSRSYLYKIFKQETGYSI
                     KDYILQVKMNRSCQLLEDASRSITEIAYSVGYQDPLTFSAAFKNYFHMSPTEFRKTQK
                     NKD"
     gene            complement(23047..24207)
                     /locus_tag="U1396_000480"
     CDS             complement(23047..24207)
                     /locus_tag="U1396_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5341694.1"
                     /translation="MTQYNFIDSPNRLSQHAEKWRKVETDKELLPLWIADMDFEPLPE
                     IRQVIRDYADHHVFGYPYASDSLYQSIIDWEDRQHGYKIERESILLIEGVVPALSMAI
                     QSLTEEGDAVLINTPVYPPFARTVKLNNRQLVANSLVDVDGIFRLNLNQLEKDIVENQ
                     VKLYIFCNPHNPGGRVWTREEVLAIGRLCQKHSVILISDEIHQDLILYGHKHYSFNTV
                     DESFKEFSIILSSATKTFNIAGTKNSFAIIENPSIRKTFAKRQLINNQHEIPTIGLLT
                     TEAAFTYGDEWLKELKVILERNIDFVEEYLATHTRIKVMKPQGTYLIWLDFSAYELEH
                     AELFDILHCKAKLILNDGLTFGKEGKHHARLNAAAPFDVIEEACQRLGKVFG"
     gene            complement(24211..25302)
                     /locus_tag="U1396_000481"
     CDS             complement(24211..25302)
                     /locus_tag="U1396_000481"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HEM5341695.1"
                     /translation="MTDYKIDTILAHTGINSDERTGALISPIHLSTTYQHPEFGQSTG
                     YDYTRTKNPTRASLETTLAAIEKADYALATSSGMAALVLLFNGFPVGSQVVAARDLYG
                     GSFRWFNEQESIGRFQFTYANTEEELIAAITEETDYVYLETPTNPLMVEFDIAKVSAI
                     AHAKGAKVIVDNTFYSPIYQNPLVLGADVVLHSATKYLSGHNDVLAGALMTNDQDLYD
                     KLFYDQNTSGPTLSPLDSYLLMRGLKTLSLRMERTTQNAQKIVAYLEKSPAVKQVYYT
                     GKGGMISVKVVDESRIPHILNTLKVFTFAESLGGVESLITYPATQTHADIPAEIRHSY
                     GLTDDLLRLSIGIEDAEDLIADLKTALEG"
BASE COUNT         7697 a         5478 c         4555 g         7678 t
ORIGIN      
        1 atacgaaaat tccccttctt cccttacaca attctctcaa aaataatcct ggcaactaaa
       61 aaatctcttc ccaaaggaag agaactattc ttatttagct gctttataaa gttcgttaac
      121 cttgtcccag ttgattactt caaagaaggc tttgatgtag tttggacgca cattgcggta
      181 gttgaggtaa taagcatgtt cccaaacatc caatgccaag attggtttca aaccttgcat
      241 gattggtgtg tcttggttag cagttgagat aacttccaac ttaccttctt tattaacaac
      301 caagaaagcc caacctgaac cgaaacgagt tgttgctgct gcagtgaagg cttctttgaa
      361 agcatcaaat gaaccaaagg ttgcatcaat atctgctgcc aattctgctg aaatttctgt
      421 tttttcaggt gaaagcaatt cccagaaaag agcatggttc aaatgaccac caccgttgtt
      481 tatcaaagct tggcggatgt cagctggaat ttgctccaca tctgacaaaa gagctaccaa
      541 gtcttcgcca atttcaggat gtttttcaag tgctgcatta gcatttgcaa cataagtcgc
      601 atggtgctta tcgtggtgaa gggtcattgt ttctgcatca atatgtggtt ccaaggcatc
      661 gtatgcgtat ggaaggtctg gtaaaataat tgccattttc gttttctcct atactaagtg
      721 atagttctat tctactccaa tgtgagagcc ttttcaattt atttgtctga aaccacggtt
      781 gaccctcgat ctaagaatac tctttttact atgcagtcgc gatttttaat aatagcaaat
      841 caaataaata atccttatca aattggcctg ttttaatttg aaaatctgta tcgattagga
      901 gcttgacgac ttttttcaaa aatccaatgg acagatggcg tgaatcacgc aaagcatact
      961 ttacttggta gggattcacc ttacgcccca taatagttga taactcagct actatctgct
     1021 gttcccctcg gccttgctct agtagtattt gcacctgtag ataggttcga aattgggtta
     1081 acatgatggc aatcaactta acctcttcct ccccttgcaa ccgcaagtca cgaactaagt
     1141 tgcgagcctc gtctaccttg gattgtagaa ttaactgtgt taaatcaaag atattatctt
     1201 gtagtgtttt ggggatagcc gcatcaatat ctgaaatttc aatcgtctct tttcccttat
     1261 aagattgaag aaagactagg ttcttactga tttctgcaaa atcaaaattg gacttttcta
     1321 aaagatattg aaaaacctct cctcccatct gcaatccaag acgcattatc tccttttgga
     1381 aatgattttt caaatccatc tccttcaaag gattggcttc taatactagt ccatctcgtt
     1441 tgaggagttt gaccagacga cgcttactgt ccaacttacc cggtgctaga atgaccaaac
     1501 atgttgtttc gacaggattt tccaaataga cctcaaactg tttgagttca tcatctgtca
     1561 aatgccgttt tttatctgtc gttaaatctg caaaataatc aagaatcact actttttcat
     1621 ctgaaaagaa gggaagagaa actaggtcca agtctacctg atgataatca gcctccgaca
     1681 tatcaaaata ggcaaaacct aaatctgccg catcaaaatc aagcttccgc agaagtaagt
     1741 ctttcgctat ttggtattgt ccgatgtctt caccgcataa aacggtcaga agctctaatt
     1801 tctctttttt taatttttca atctgttcaa ttactgtcat aaaaacctca aaattctttt
     1861 ctcattgtac cacaaaaaga gcctagacat aaagtctgga ctctttcatt gaaatttata
     1921 tcaggaaggt agaaaaaatt aattgataat cactccaaat gacctatttt ccaaatagca
     1981 gttcctttgt tagctattcc accacccttt gaaattccac caagcatctt gaaaagtatc
     2041 ctttatccga tctctccaag tcttattttc ttcttcctca atagaacgtt tgaacaaggc
     2101 atctgcgtac tcatcctctt gttccttttg agtctgttca actcgcttct tttcactttt
     2161 atatactaat tgaccaaaat acaaattccc atcgtctgca aattttaatg taacaacatc
     2221 gccttcttcg agtttcttat tcaattttac aacataatct ccactgccgt ccgcacgttc
     2281 cccacttgta taccactctt tagtttggca attctctgta gtataactcg gacacttgag
     2341 ttcatgcttt acaggctcga ccttcaatcg ttctccattt atatatgtag caacataacc
     2401 aaatgaacca acatggacat ggatagagtc tgaaccagtt ctaaaaggag ctacttctac
     2461 ccccggaaca ttctgttgac ctactggtac aaacatcgaa gtctccgcct ttacacttga
     2521 taacgatagt aaaccgatga caaaggtaac taaaataaac gatacttttc tcaatttcat
     2581 tttgcttttc tcctagtagt acaatatatt aaccggaatt agtatatacc aatttcatag
     2641 agaaagcaag aaaaaacgct ccttaagtaa aaactaaact caaaaactca attcttatcc
     2701 aacaccttga aaggaatgtg ggaataatct ctgtgcgttt ttaaaaattc caaggcttct
     2761 ttttttacct gtacgagatt gacaccttgg gcattagccc catagacaca gccacaatag
     2821 cactggcgat aaatgtcata ctcttcacac atttgaactg aacgctgata gcctccattt
     2881 ttcttaaagt cactcggaag atactgggta ccgtataatt tctgcacctc aatcccagca
     2941 gcattgatgg tctgcgaatt cttatgtgga ctgattgtca aagccgaacc aaaatagtca
     3001 aagccaagct caactgcctt ctccgcagtc ttatccaacc gataatcata gcaaacctta
     3061 caccgatctc ctccctctgg ctcattggca agatgctgag ttttcttgaa aaattcctga
     3121 gggctatagt cagcttctag atagcctacc gactgtccag ttttctgatt aaattctttg
     3181 acaaactggg ccgtcacggc tgcccgccgc tggtattccg cctttggatg aatattggaa
     3241 ttcgcaaaat agatggttac atctgcatat tgagtcaagt actccaatgt ataggtcgag
     3301 catggggcac aacagacatg catgagaatt ttcggtcgaa gcccagcttc ctgccacgtg
     3361 cttgccattt tttgaaacac tttatcatag ttaacctttt gattcggtga tagagtcgat
     3421 aaaatctctt caactttaat catacaaacc tccaaatata cattcattat actatatttg
     3481 aagaccactg catagatagc aataacatga gagaacactc cctatttcca cctaaaaagg
     3541 tcccccagac cttgatataa agaaaaacgc ctcccggcgt ttcctatttc caacctaaaa
     3601 taaggcgtca gggttggggg acaaagaaaa agcctctaaa gactttttct tttcctatct
     3661 ccaacttaaa acgtggggta acccacgttt taaccaccca gatatgcttt tttgacttct
     3721 tctgaggcga ggagttcttt tcctgttcct gagaggacga cttttcctgt ttctaggacg
     3781 tagccacggt ctgcgatagc aagggctttg ttggcatttt gctcaatcaa gaggacagtt
     3841 gttccttgtt tttgaatatc ttggatgata tcaaaaattt cttggataaa gatcggagcc
     3901 aagcccattg atggttcatc aaggagcaag agctttggtt ggctcattag ggcacgtccc
     3961 atggccaaca tctgttgctc cccacctgaa agggtagctg catcctggtt tttacgttct
     4021 tccaaacgtg gaaaacgagc aaagattttt ttcaagtttg cttggttttc ttcacgattg
     4081 ttgcgaagga aggcacccat ttccaagttt tccataacag tcaagcctgc aaagacatgt
     4141 cgaccttctg gaacttgcga caaaccgtcc gcaacgattt tacgagcagg aactttttga
     4201 atctcatttc caaggaaaga aatcgttcca gctgatggac gaacaagtcc tgaaatagta
     4261 cgaaggatag aggttttacc agcaccatta gcgccgataa gtgttacaac ttcaccttca
     4321 ttaacctcaa agctaacatc tttaacagct tcgataacac cgtagttaac ggaaagattt
     4381 tttacttcta acattgccat taagcttcac ctccaaggta ggcttcaatt acacgcttgt
     4441 tattacgaat ttcttctggt gtaccatggg caatcaaacg accgtactcc aatacgtata
     4501 tccgctccgt tacttccata accaagctca tatcgtgttc aatcaagatg atagtaatgc
     4561 caaattcttc tttgatttta cggataagtt gggtcaattc tgccgtttct tgtgggttca
     4621 taccagccgc tggctcatcc aagaaaagaa tttttggttc agtcgcaagg gcacgaacga
     4681 tttccaaacg acgttgttga ccgtaaggaa ggttcttagc taatgtatct gcatctccat
     4741 ccaaatcgaa gattttcaaa agttcaatcg cttttgtttt caacgcttct tcattcttat
     4801 agaatgctgg aagacggaag aaacttgcaa atacttctga tttaccatgg ttgccaagac
     4861 caatcaaaac attttccaaa acggtcatat ttttgaacaa acgaatgttc tggaaagtac
     4921 gaccaagacc aagcgaagca atttttgatg gtgctttacc gttcaaaata gtccctgcaa
     4981 gagaaattgt cccctcgctt ggctcataaa cacctgttaa gaggttgaaa agagtcgttt
     5041 taccagcacc gtttggaccg ataagaccaa ccaattcccc ttcatgaagt tccatggtca
     5101 cgtcaccaac ggcagtcagg ccaccgaagt tcttggttaa atcttttact tcaagtaatg
     5161 ccattactta acctccttct tcttgagtag agccgctaca ctgaattcct tagttcccaa
     5221 aagacctcca ggacggaaaa tcattaagag aataagagct aatgaataga taatcattga
     5281 aatatcagag taactcttga ggaatacgtt caaaatacca agtacaatgg ctgctacaaa
     5341 ggtacctgtg atagagccca aaccacccaa tacaatgata atcaaaacgt taacggaggt
     5401 cataaaggca aagtctttcg gaacaattgt cccaacatat cctgcatgga gaccacctgc
     5461 aattgctgcc gtcatagcac caaatacaaa ggctgaaact ttaacaaatg ttggattgac
     5521 acctacagat tctgccgcaa tttcatcctc acgaacagaa attgtagcac gtcccatcgg
     5581 actgcgcaaa aagttaactg tcaccaaggt agtgatgatt acaaaaatgt aaactaaagg
     5641 ccagcttgta aagagtggaa tagacataat acctgctgca ccattcgtta cactaccacc
     5701 attgataatt aaaatacgaa taatctctgc aacaccgaga gtcgcaattg caaggtagtc
     5761 acctttcaaa cgaagggttg gaataccgac taaaagagct actgcacctg agattaacat
     5821 cccaacaatc aaggcgatag caaatccacc ataagttggc atcattttcc caaggatacc
     5881 tactgcataa gcaccaatag ccataaaacc agcatgacca agtgaaaatt gacctgagaa
     5941 accaacaatc aagtttaaac caactgccaa gataatttga ataccgattt gctgaacaat
     6001 ctggatgtag taaaaattca gaatccctgc tgatacaaga ccttgaataa gtccaaaacc
     6061 agccaataag atagccaacc aaatcgcatt aacttttaaa ttttgcttca tggttacacc
     6121 ttctctttca catttttacc aagaatacca cttggacgca ccaagaggat gatgatcaaa
     6181 acagtatata cgatcgcatc gcggaaagta tcgaattcaa tcacataggt gaatgtttcg
     6241 atgataccga taacgaagcc accaagcgca gcacctggaa taataccgat accgcccaat
     6301 actgccgcta caaaggcttt caaacctggg gtcatcccca tcaaaggctc aatctggttg
     6361 tagtagagac ctaggagaac acccgcagca cccgcaagag ccgacccaag agcaaaagta
     6421 aagctgattg tacggtttac attgatcccc ataagctgag ctgcatcgct atctacagag
     6481 accgcacgca tggctttccc catttttgta cgtttgacaa ttaattgaag tgcaaccatc
     6541 aacgcaagcg atacaccaag aataatcaac tggatattcg taacagaaac tggaccaagg
     6601 ttaaaagtca cagcttcgat tgcttgtgga aaggctttta cgtctgctgt aaagaattta
     6661 atcatagtgt attctaagaa gaaggataca ccgatagccg taatcaaagc tgctatacgc
     6721 gttgaattac gcaaaggacg ataggctaaa aactctataa ctacaccgag aatagccgtc
     6781 cctaccatcg ctagaatgag agcaacaaag aaacgcgttc caccatctgc aataaaattt
     6841 aaattattta ataggaagta ccccataaaa gcacccatca tatacaaatc accatgggcg
     6901 aagttaatga gtttgataat tccgtacacc atggtataac caagggccaa aagggcataa
     6961 acagaaccaa gaatcaaacc attgacaagt tgttgaagca taggttcacc aatctttcta
     7021 aatatttttc gagctcaata gcattgttac attatacaaa attttctgaa aataagcaag
     7081 ttagacagag agtttaatca ttaaaattac agaaaattta accaacccaa attttatatc
     7141 cgcatgtata ctattctata cattctgaca agtgaaaaag agggaattcc ctcttttcat
     7201 ccactattag tcaatagaga tagtatctac agatgattct tctccgtttg ttaaactaac
     7261 aacataaact gatttaatga cattgtgctc tttgtcaaca gacattgtac cagtcacacc
     7321 tttaaagtct ttcagagctg caagattagc cttcactgct gctgaatcag ctgcaccttt
     7381 tgctgcttct gctgccatgt aaaccgagtc gtaagctaaa gctgagaaca ttgatggctc
     7441 ttcattgtat tctttcacat aggcatcata gaatgctttt gctttttcgc ttgctgatgt
     7501 tacaaatcca gaaaggtagt aaacatttga tgctgctgat gcagttgcca attcagtaaa
     7561 ttgtggtgag tcaaaaccat ctgaaccaag aattggcttg tcaataccca aaccgcgtgc
     7621 ttgcttcaca attgtacctg tttcattgta gtaaccaggc atgatgattg catcaaattc
     7681 cttatctttc aattttgtca aagcagcttg gaaatcttta tcgccagaag caaatgtgat
     7741 ttctgaaacg atttctcctg tgtatgcttt cttgaacgcc tctgctacac ccttaccata
     7801 atcagaagag ttgtcaaagt aaagaacaac tttcttagct gacaggttct cagtagcgta
     7861 tttagccata atttgacctt gatacccatc tgtaaaggtt gtacggaaga agtattcttg
     7921 gacctcacct ttatcgttca caaccaagtt tgtttgagtt cctgaaggag taatcatagg
     7981 aacaccagca gatgtcaatg ctggaataga ggctgctgaa gctcctgatg tagcaggacc
     8041 aatcacaacg tttgcccctt cacttgccaa gcttgttgca acagtagctg cctctgctgt
     8101 ttcagacttg ttgtcttttg tgatcacttc gatttttttg ccgtcaatac cacccgcagc
     8161 attgatttct ttcacggcaa ggttggcacc tttttcctct gtttgaccat aagatgaaac
     8221 agcacctgac aactccaagt tgtagccaat tttaaacgta tcacctacag aagaacctgc
     8281 ggctgaagta ttggttgtcg aaacattacc acatgcagcg agtagagctg cagaggcaaa
     8341 tgtagcaagc gctactgcaa attttcttgt tttcatgaaa actccttaaa tctttcttaa
     8401 attttacgat gtatctaata tactgaatta tctgaaaatt gtcaacaaaa aagaaaaaaa
     8461 ttttaaaata aaaaattagc agggaataca tacctgctaa ttccgactat cctacgactg
     8521 atggttcttc atctctccat agattaccta caaagttttg gtctaattcc ttaatgtatg
     8581 aaggaaccac tttttttaca aaacgttcct ttttcaattt taatatggta gcttctacta
     8641 gttcttgatc catatacacc aaaacatatc gcaagcgttt ggaatggtaa acaatatctc
     8701 catattggct gagtttacgt gcatcacgat tgtagtgtaa atagacagtt aagcaagtgc
     8761 gatttttctt ctcaaacatg tcttctcctc taaaaattct ctttctatat tataccgttt
     8821 tcaatgataa atgaaaagct ccaactacct gtaaaagagt tggagctaat aggaatagtc
     8881 agtactatta catatttgtc actgcttatt tgacttttgt attgtccata atctggtcaa
     8941 taaatccata agccaaggtt tcttcagctg acatccagta atcacgttct gcatccttgt
     9001 ggatttgctt gactgtctta cctgagttgt ctgccaagat tttttctagc ttattacgtg
     9061 tttttaatag gtgttctgca gcaatagcca tatctgtttg ctgagtacca ccaccagttc
     9121 cacccattgg ctggtgaatc atgtactctg catttggcaa catgaaacgt ttgcccttgg
     9181 caccgcttga tgcaatgatg gttcccatgc tcgcagctgt tcccataacg atggtttgaa
     9241 catcagcttt aatgaaattc atcgtgtcta caatggcaag acctgctgac accgatcctc
     9301 ctggcgtatt aacatagagg taaatatcct ttgtagggtc ttgggcatca aggaaaagca
     9361 attgtgcaat gatagagttt gccatgttgt cctcaactgg tcctgtcaac atgataatgc
     9421 ggtctttcaa aaggcgtgag taaatatcat aagaacgctc accacggcta gtttgttcaa
     9481 taactactgg aatcataaaa ttactccttt tcgaggtttt ctgtacccat tatatatgaa
     9541 tagtcaaaat tggtcaaata aaaaacacga tttcaggaaa tgaaaaagaa accagcagag
     9601 ctgatttctt aattattttg taccgaacaa gcggtcacct gcatctccca aacctggtac
     9661 gatgtagcct ttttcattga gtttttcatc caaggctgcc gtatagatat caatatctgg
     9721 atgtgcttct tgaagagctt ttacaccttc tggagctgaa acaagagcaa caaatttgat
     9781 atttgaagca ccacgttttt tcaatgaatc cactgcaagg atggctgaac cacctgtagc
     9841 aagcattggg tcaactacaa aaatatgacg ttgatcaata tcttctggta atttcacaag
     9901 atactcaact ggttgaaggg tttcttcatc gcggtacata ccgatgtgac caactttagc
     9961 ggctggtacc aagcttagca aaccatcaac cataccaaca cctgcacgaa gaattggtac
    10021 gatagctaat tttttacctg caatttgttt ctgaactgtt ttagtgattg gcgtttcaat
    10081 ctccacatct tcaagtggca agtcacgcaa aacttcgtaa cccatcagca tcgcgatttc
    10141 attaaccaac tcacgaaaat cctttgttga agtagatgta cgacgaagga tagacaactt
    10201 atgctgaatg agtgggtgtg aaatgacttg gaatttcccc atgatgataa aacctctctt
    10261 ttttgttttt tctattttac caaaaaaatt gaaaaaatgc ttgagaatat ggcaaattta
    10321 tttatttttt gaaaacgata gcttcaaaag gtctcaacat ccctttatta atcgcctctt
    10381 cgttttcata attgttcatg aaaatagaat attcttccac agctatagta taagcctgct
    10441 cctggcttga aaagtttact aatatgatga aatcatcctg ttcatcatat ttacggtagg
    10501 ccattaccga gctatttcca gtctccatca cttcatattt tccttcagac atacaaggat
    10561 actctttccg aagagcaatt aatttttgat aggtatagaa aagcgattgt ttgtctgcaa
    10621 gtgctttttc aacgttaatg tctttgacag tatctcccaa agccagccag gcttgacctg
    10681 tactgaaacc tgcaccttct tctgctgtcc attgcattgg acggcgagca ttatcacgac
    10741 ctttggcatt tatagaagta atcaattcct ccttggtgaa gccattttca atccgttccg
    10801 catacatgcg acgtgtttca atatcatccg cttggctaat atccgtaatc ggtgcattaa
    10861 tcataccaat ttcctcacct tggtagatat aaggtgtccc tgacataaaa tgaagataaa
    10921 tagctaacat tttaccactt agttcacgaa atgcaggtcg atcatcaccg aagcgagaaa
    10981 tggcacgagg taaatcgtgg ttattccaga aaagcgagtt ccagccttta ccaaccagtt
    11041 cagtctgcca tttggataga acgttatgca aacgtgctgg atcaagcggt gccaaatccc
    11101 acttttcttt cccttcctgc tgatcaagtc ctacatgttc aaattggaaa atcatcgaaa
    11161 attcttttcg atcaggatga gaatacaact gagaattttc tggattggca ctccaggttt
    11221 ccccaacagt cactaagtcg taagcaccaa aggttttctc gtttaattcc tgaataagag
    11281 gatgaagagt gggaccatcg gctgtaatta atttttccgg ttcttttcca atcaaatcaa
    11341 tcacatctag cctgaaaccg ccgacacctt tttcaatcca aaaattgatc atgtcccaga
    11401 tttcttgttt cagagcagga tttttccagt tcagatctgg ttgcttaaca gagaattggt
    11461 ggaggtagta tttgttcaga tgtggaacgt attcccaagc agaacctgag aaggtcgagc
    11521 gtaattcatt cggctcatca gcccaaacat aataatcata atagggatta tctggtcctt
    11581 tgagggcttc ttgaaaccag aaatgttcat ccgaggtatg attgagcacc aaatccatga
    11641 ttattttgat attgcgctta tggccttctg caatcagctc ttccatatct tccatggtcc
    11701 caaattctgg agcaattcct tggtagtcac tgatgtcgta accattgtca tccatggggg
    11761 actgataaac aggactgagc caaatagcat caattccaag ctcatggaga taatctaatc
    11821 ggctgataat ccctcgaata tccccgactc catctccatt tgaatcttga aaactacgag
    11881 gataaatttg gtaaatgacg gacttcttcc accaatctgt tttttgtatt tctggcattt
    11941 gattgatcct ttctgtacaa tcttattaat gtaagaaaaa gaggtgtccc cctctttcta
    12001 tataatcata ttataactca attgtggtaa tttttccctc ttcaatttca acaatttcaa
    12061 aggatttttc ttttaggttt gctgttaggc gggcagatac ccctgcatct tgattattcc
    12121 agaaaatttc catacttgtt tcatccaaca tcttaacaga gaactccccg tcgaaagctg
    12181 gacttgtatt gcggaattta aggagtttga acaaggattg tacaactggc cgttgcactt
    12241 cctgctcaat ttcttccaaa tcatagtaat ggcgattgat attgcgccct tccttacttg
    12301 attctaaaag ttcaatatca ttttcgcctg ctagtaaacc aacataataa atctgtggaa
    12361 tacctggtgc aaagcattgg agaacacgcg ccaatagata agcttgatca ttattgccaa
    12421 gagcagaata ataagtacag ttaatctgat aaatatccaa attattatag gcttctgtac
    12481 tataaatttt cttcacattg gcaccttgtg catacaaggc ttcacgtgtc tcctctgtct
    12541 cttcatccgt cagcaaatcc ttaacatcca caacaccgat tccatcatgt gtatcaagag
    12601 ttgtaaattg cttgcgaggg caaatctcca tccagtgcac caggcgattg acatgaccag
    12661 aatacaaagc gtggagaacc agcattggca aggcaaaatc ataaacataa taatcttgct
    12721 cggcaatttt ctgctgaatg gtatagtgtt catgaatttc tggtaagatt tctacatctt
    12781 ttggtgccaa taactgacgt ggaaaatgga gcatttccca aatatcaggt tccacaaaga
    12841 aacaattggt tcctattttt ttattggcat aagcaaaggc gtccaaacga atgatcgaag
    12901 caccatgttc tgccaactgt tccagatttt cttggatgaa ctggcgtgtt gtctctgtag
    12961 tcacatccaa gtcaatctgc tgttcatcaa aggtacacca taccttctct tcgctaccat
    13021 cagcaaatgt tgcaattcga tatggagcac gaggtttacg cttatagatc aaatcaacat
    13081 cttcttgcgt tggctcacca tttggccaaa agtttttata acgaataaac aaatccgcat
    13141 aagctgattg gtctttcttt tcaagaaaat caaggaaata aggagatttt gctgatatat
    13201 gattgatcat aaaatcgaac atcagatagt agtccttact caatgcttca atatctgacc
    13261 agtctccaaa tgcaggatct acctttgtat aatccattgg cgcaaaccca cggtcacctg
    13321 atgatgggaa gaatggtaga atgtgaatac ctcccacaac atcctttaat ggtccctcaa
    13381 gaactttttt caaatccttg agattcttgc ctaaactatc agaataggta atcaacatag
    13441 cttggttttt aattttcata gacattcacc tttgtaagcc ttttcttttt tattttttag
    13501 aaaaggttga acaagtcaac ctttgtaatt atttgacaga accacttgtc atacctgaaa
    13561 taatatgttt ctggaagaca aggtatacca ataatattgg gataatcccc acaacatagg
    13621 aggcaaatga tggtccataa tcactgaaat acatgccttg ataattgtat tggaaaagag
    13681 gtaaagtcca catgctttga tcacggttca atactagtaa aggtaagaga aaatcgttcc
    13741 agacccagag ggcattgata atcaaaaccg tagcgtgcat gggtttcatg agtgggaaaa
    13801 taattttcca gtacatagta aatttatcac agccatcaat agctgcagcc tcatccattt
    13861 cttcaggaac aatggtctta atatagccga catagaggaa gagggcctga ggaactgcat
    13921 aggtcaaata tagaataatc aaaccgacaa tattgttcaa accaaggctt gacattaatt
    13981 tggtcattgg gagcataatc acttggaaag gtacaaaaat cccaataatc aagaaaaagt
    14041 agataaagtt aaacactgtc tggcgtttca tttgacgggc tacggcgaaa gctgccattg
    14101 gaataacaag tagaatcaag ccaactgcta caatcgtaat caaggctgaa ttgccaaaat
    14161 attgtacaat cccatcatta aacaagcgtt cgtagttatt taaggtgaaa ttttcaggaa
    14221 gaccaaagaa gttgctcgtg atttcctttg ttggtttgaa cgagctaata atcgttacaa
    14281 gtagcggtat aaacatgaag agaataccgc tgaagagcac gagatagacc caccaatttt
    14341 tctgtttttg agtattcatg tccgtcctcc taaatttcaa atttcttcga aattctcatc
    14401 tgaatcaatg agatgacaat aatgaagatg aagagtacta cagccaaagc attggcataa
    14461 gagaatttat tgtctacaaa ggcatagtta tagactaata aaccaagtga ttctgttttg
    14521 ccgtctgggc caccacttgt cagtgcaaag ataaggtcaa atgctgtcaa acctgacttc
    14581 attgccaaga tgaaaaccat actgatagat ggtaataaga atggaagttc aatattgaag
    14641 aattgttgag agcgtgttgc accatcgatt gcagctgctt ctttcacatc ttctggaata
    14701 ctttgtaacc cagacaagaa gatgatgact ggcatcgcca atccctgcca gagagccaca
    14761 aaaagtacag ctggaataac agtattttct tgtaccaata agttttccat caaccaatca
    14821 atatgtagta attctccaat ttgtgtgaaa ccatagttga acaattggac aaaaatcaag
    14881 cctaaagtaa cggttgaaag aactgctggg aagaaatacc aggttctaaa gaaaccaaca
    14941 gctttaatct tacgattaag gagactagcc aaccaaatcc ctataacaat ttctccgatg
    15001 accaaaccaa tggtgaagat aatggtaaaa gtcatggacg tataaaaatc aggattcttc
    15061 aagatatcta gatagttttg aataccaatc aagctgaaat ctgatgtcaa tccattccaa
    15121 tccgtcagac tataatagat tcccgttaat aagggataga agaaaaagat taactgtaga
    15181 ccaattggta tggcaacaaa tagatagggc caatatttgg caataaaacc tttttgattc
    15241 atcatgatac tccttttagc gtttgttata gttgttgcaa ctcagctcca tctgaattta
    15301 gggggcttcg agataaagct gaattggaac aactataagg gtaagaagag aaatccccac
    15361 ttacatcatt tatagttgtt atgtattact tacttcattg ggtcaaagaa agcattcaat
    15421 tcgttcgcaa gcttatctgc ctttggatct ttgattgttt ctacagcgat ggtccagaaa
    15481 tcattttgcg atgtccattc tttatgcaac catgcaattt gcttatcagt aaaggcatat
    15541 tgggcaactc cttcaatttc tgggaacttc ccttctgttt caactccctc gacagaagtt
    15601 ggcgaaccgt ctacatcata atatttttgc atgacttctt tgctagacat ataagcgagg
    15661 aactttttag cttcttctgg gtgttccgtc ttggcactga ttgacaaagc taagtcggca
    15721 ccaccgatag tcacatcatc cccttctttt tctccaggga aggcaaagat accgtaatcc
    15781 aaatcagcat tctgctgatt gatgactgca gcagcccagc taccttgtgg catcatgaga
    15841 gctttgccat ctgcaaatgc tgcgacagca tcggcatact tagctccaga aaatcctgat
    15901 tgaccgttgt catgtaataa ttcgaaggat ttaacaactg cttgcgttgc tggattgtca
    15961 gctgtaatac tacctttgcc actccgaact aggatatctt gagcttggtc ataacctcct
    16021 gccgcgctca cccatgccaa ctgatggaat ccatttagtg accaagaatc agccaaagac
    16081 agtgcaaatg gtgtttcacc cttgtcttta atcgtcgcta ctaatttttc gaattcagca
    16141 gttgtttttg gcacttctag gcctaattct ttaaatttag ccttgttata atagatgcca
    16201 tagacattgg tgttcaatgg gagagaataa attttattgt caatagcata gaattctgct
    16261 gctccctctt tcaaattgcc aactccagca tcctctccga gttctagaaa acgaccatct
    16321 tttgcccaag catcaaaatc tgccgcaacc ggatagacat tgataatatc tggatcttca
    16381 ttgttggcca tacgagtttt caagatggtt tctgcatctg gcacactgga aaatttaata
    16441 ctaatgtcag gattggcctt ttcaaaatca gtaatgattt cttgcaaggt cgcttgcatt
    16501 tctggttttt gcgagaaata ttctaattcg actttatcgc tagaccccgc cgagccattc
    16561 ccacatgctg ctagcaaact agcaaaagca atcacagatg cacttttaac gaatgttgta
    16621 aatttcattt tctttctccc tctttataac taggtcattt agtaataata tcatattttt
    16681 caactgctaa tgtaactaat ccttgactct ggaaacgaat gccatctgct tcaagtggtg
    16741 tttcaagtgg tgtttcaatt tccatactga acacttgctt ccctccattg atagacaatt
    16801 caatggaatg actatccaaa ataaagcgac aggtgattga atcttggagg tctactgcta
    16861 cttttctgaa acaattctga tctaatctaa gcccagaata ggttcgatca acttctttgg
    16921 atcacgaaaa tgttctctac taaaaccgtc aggcagtaga tttcctgtca atactggatt
    16981 cgtattaact tttttataat caactccatc tccaacggct aaacattggt cttgaacaac
    17041 ttcaatctgc ccactactgt tttcttgttt tcgaacccct gtataaatta gatagtgttt
    17101 accctcgtgc tccactgcac ttcctgaaaa gcatccttcc tggtcatacc attggtcggg
    17161 tgctagagcc acggacaaat ctttccaaac taccatatct tccgtcactt ggtgtcccca
    17221 gtgcatgggc ccccacttga tatcataagg atgatactga taaaatagat ggactttacc
    17281 ctgaaattct gaaagtccat tcgaatcatt tagccaacca acaggtgggc taacatgaaa
    17341 tcatggcctt gtatccgaag caacatgatg ctgggaaaca taatctctag cctttttcaa
    17401 gttttgtatc cttcacctcc ggatgttatt tgtaatgtaa ccggttactt aatcgtattc
    17461 taccctttta gtttttgatt gtcaagcgtt ttcaaaaata tttttctaaa ttgaaaaaag
    17521 attgacacat agcgattttc actatataat actgaaaaca agaaagggtt ttcaaatgaa
    17581 gcaacaaaag gttacatttg cggatattgc aaaacataca aatttttcaa agacaaccat
    17641 atcacgatat tttaataatc ccgattcatt aacagatgcc agcaaacaaa agattgaaag
    17701 agcattaatt gaactgggtt accaagaaaa taaacttgca aaagtattag ccaaaggtaa
    17761 aacggagttc atcggtatta tcataccaaa tctatttctc cacttttatg cggccatttt
    17821 agaagaaata ttagctacct ataaaaaaaa taattacaaa ttcttagttt tcatcggtga
    17881 tgacaatatt gagaccgaac gagagtatat ccaagaatta ttggcttata atatcgaagg
    17941 attgattgtt ttaagtcata ccattacttc tgaagaatta gccagttaca atgttcctgt
    18001 agtttcaatt gagcgcgaat cacaatatat ttctagcatt gaaaccgaca actatctcgg
    18061 agccattcaa gctacaggtt ctttaatcaa gaataactgt gatatactta tccatattaa
    18121 tggaaaattg aaagaaaata tacctgccta taatcgagtc aaaggtttcg aaacaatgtg
    18181 tcaggacagt gatgtagagt acagaatctt tgcaacggac ctaggtagtt cttaccatca
    18241 gattcaaact gaattacaac accattttga gacgattgag gctaactatc aaggtaagcg
    18301 caaaggaatt ttcttcgcta acgataccta tgcctctatc tttgtcaata tcctattcca
    18361 aaaatatggt catttccctg aggattatcg tattgtagga tttgatgatt ctccgattgc
    18421 atcggaaaca attattccat tgacaactat cagacaagat ttaaaggcta tttctcacac
    18481 agctttagaa gttttgagcc agcaaataga agaacgaaag aaagaaatta tttcgcctat
    18541 ccaacatcgc gagattgctc cgaaattgat taagcgctcc acaacatttt aaaataatgg
    18601 ttgcctagta gaacgaaaat atcgttacta ggtaaccttt tttattgttc attacttcat
    18661 tgggtcaaag aatgcgttca gttttttcac taattctgct gagtttggat ttttaaccat
    18721 ttcaacagta atgttccaga actcatcttc tgattcccat tcagattgca accaaactac
    18781 gtgtttatca gtaaaggcat attgtgtaac tccagcagtt tcttcaaact taccttctgt
    18841 atctacacct tcaactgaag ttggtgagcc atctacatca tagtatttct ggataacttc
    18901 tggacgagag aggtattcta ggaatttttt agactcttct gggtgctctg tatctgctga
    18961 aatagataga gcaaggtcag ctgcaccgat ggtatagtcg ccaccttctt tatcgccagg
    19021 gaatgtaaac ataccatatt caaattctgg ttcttgttgg tttacagctg tagctgccca
    19081 tgtaccttgt ggaagcatga gagcatcacc cgctgcaaag gctgccaccg catctgcata
    19141 gagcgcgcct gttgcccctt tttgtccatt gtctttcaac aattgcaagc gttctaaaac
    19201 tgcttttgtt gtcgcatcat cttgaattgc gcctttggca ctacgaatca gaatatcttc
    19261 tgcaccatca aatccacccg caacagttac ccaagctaac tgatggtagc cgttcaatga
    19321 ccaagcatcg ttcaatgaaa gagcaaacgg tgctgcactg ccatcagact tgattttgtc
    19381 taccaaagcc acaaattctg cataggtagt tggaacttcg agccccaatt ctttgaactt
    19441 atccttatta tagtaaatac cataggcatt tgctgtcaaa ggaagagtgt aatttttttc
    19501 gttaacaaga taaggcgtga cagcaccatc ttttagatga ctgagacctg catcatcacc
    19561 aatttctagg aaacgaccat ccgctgcgta tgctttgaag tccgcatttt gtggataaat
    19621 gttgatgaca tctggcgctt cgttgttggc catacgggtt ttcagaacag ttcctgcatc
    19681 tggtacattt gaaaatttaa catcaatcgt aggattttcc ttttcgaaat cattaataat
    19741 ttcctgaaga gtagcctgca tttcaggttt ttgtgagaaa tattctattt ctaccttatc
    19801 gctactactt gcattcccac aagcaaccaa gaagctggca aaagcacaaa ctgacgcaca
    19861 ttttaaaaat gttttcattt tcattataaa atcctcctag attttgttaa aaatatattg
    19921 tacactaaaa taatcttttt gaacatgtgg cattgtaaga ccaatgttca gcagttcatc
    19981 cccgtagaat gtttctccca attgagggca ttcatacaag gcatccgggt ctagcccctt
    20041 caaccgaaca tgaagcaaag gcgcttctgg cttagcaaga atttttacaa atgtaaagac
    20101 cgcttgattc ttatcttgac taacataatt ggcagcccag gtattgctcg tctttttcag
    20161 acggtagagc tgaccgaatt ggatagtttc acgaatggag tgataggttt cgatctgctg
    20221 actgatttca tccaattcct tttccgaaag tttcgttaaa tccagctcgt aaccaaacgc
    20281 tcctcccatc atagctacat tacctcgtgt agcaaggggc gtaatacgac caacttgatg
    20341 atttggtaca gctgacacat gtgctccgat agaagaagta ggataaatca aactggtacc
    20401 ttcttgaata gataagcgct caatcgcatc tgtatcatca cttgcccaag cttgtggcat
    20461 gtaatacatg attcccaaat cattacgacc tccaccgcct gcacaggatt cgaaaagaat
    20521 atctgggaac cgctttgtaa ggtggtctaa tacacggtag agacctagca tgtaacgatg
    20581 gtggaactca aagcgctggt catttgctaa accttcaggg atattggtga tattacggtt
    20641 catatcccat tttacataag aaatattggc tgattctaat atggaagaga cgctatcaat
    20701 gatgtagtca cagacttcct gcttggtcaa atccaaaact aattgttctc ggctgtagat
    20761 tggtaagcgt ccttctgtcc gaattgccca atcaggatgc tcacgataaa gatcgctatc
    20821 aatagaaatc atctctggtt caaaccacaa tccgaatttc ataccaagct catttattcg
    20881 gtctgctaaa ccattcaaac catttggcaa cttatccaaa ttgactttcc aatcgcccaa
    20941 tgaactttca tcattgtttc gtttaccaaa ccaaccatca tccagaacaa acaattcaat
    21001 accagctcga cttgcaacct gagctaactg taaaatcttt tcttctgtaa attcaaaata
    21061 ggttgcttcc cagttgttga ttaaaatggg ccttggtttg tttacaaacg atgatcgaat
    21121 gaggtgtttt gtgataaagt gatgactatt ttgtgtcata ccagtaaatc ctttatcagt
    21181 gtatgataag agaacttctg gagtttgaaa ccggtcatcc ttatccaatt gccatgagaa
    21241 atagtgactt tccaatccta gtcccaaacg actggtttcc atggctgtcg tttcgacaaa
    21301 tgctgtaaag ttgccgctat agacaaggtg ggctgcataa acatcgccct tgtcctcact
    21361 tgcatcgggt gaggctagtg ctaagaaggg tgttcttgag tgacttgaag cacctcgaat
    21421 gctaccaatc gaatactgac cttttgtcaa tggggtctgt gtccactctt tttcataagc
    21481 ataacgtcct gccaagctgt gaacaatgaa atcttgatgt ggaaaatcaa gcgttgcaga
    21541 caagaccttc tctagtttgc atggatattt gccagtttga attgtagctg accgtgcgag
    21601 ataggaagct tcttcaaaaa cagaatactg aagtgttacg gtaatatctg tcaactgatc
    21661 gtaaagatca atttcaagac tctctacctc ttcttgattt ccaaaacttg ctggtaatcc
    21721 cctcagttct tttttcccct tgtataatcg atactctttg tattttaggt caagagtgac
    21781 tccaaattcg ttccgaacat ctaatgctga ggttctaaaa tctcccagac cattgctgga
    21841 atattcgagt gggaggacat ccaatgagta tgtcctatcc ccagtaattg gactcggaga
    21901 aaacgatcga tctaaatatg ttattttgtt tccatcgcta aatttttcga tttttttccc
    21961 aaaataacga tgaaccagat cgcctgtttc caacacttgg atgatataag agaattctct
    22021 tgttttcagg tgaaaaatct gtttttcatt ataaatctca atcacattca tctctcccat
    22081 ctcttcttta tgctattatt ttacaaaatg aaaacgcttt acttaatagt cttttgtatt
    22141 taaaacatgt tataatgttt cctaggagga ttgaaatgaa tattctaaat atctataatg
    22201 aattggatag tcataatttt gacctaaatg tagaccatta cggtgccgaa caatgtgaca
    22261 agggctattc cttcggtcct actatccgtg ataattttgt cctgcatttt attacaaaag
    22321 gaagaggaaa aattcttgtt gacggaaaaa caagctatct tgctgccggc gatttgttta
    22381 ttcttccaaa ggatgtttcc attttctatc aagctgatga tatagacccg tggacctata
    22441 tatgggttgg ttttagtggt tcacgagcaa aagacctact taatcaaagt caactgctag
    22501 aaaactacta cctccactcc aatctagagt caccaattct aggctacatg catcagatta
    22561 accatgttca gatgcatccc atcccctcta tcacagaatt ggtcttaatt ggctacctca
    22621 accaactctt agcagcactc atcgaggaat ttcccagtga aacattaatt aagcctgaaa
    22681 cacaaaccaa gcactatgtt cagcaagcca tcaagatgat tcataaccac tatgcccatc
    22741 caattaaagt ttctgaaata gcagattttc tagctttaag ccgaagctat ctctataaaa
    22801 tttttaagca ggaaactggc tattctatca aagattatat tttacaagta aaaatgaatc
    22861 gttcttgtca actattagaa gatgcttctc ggagtatcac tgaaatcgcc tattctgtcg
    22921 gataccaaga ccctctcacc ttcagcgcgg ccttcaaaaa ttatttccat atgagcccga
    22981 cagaatttag aaaaacacaa aaaaataagg attaggtgat tttactcaca cctagtcctt
    23041 atttctttat ccaaaaacct taccaagtcg ctgacaggct tcttcaatga catcaaatgg
    23101 agctgccgca tttagacgtg catggtgctt accttcctta ccaaaggtca aaccatcatt
    23161 caaaatcaac ttcgctttac aatgaagaat atcaaagagt tccgcatgct ctaactcata
    23221 agcagaaaaa tcaagccaga tgaggtaggt tccctggggc ttcatgacct tgatccttgt
    23281 atgggttgcc aaatactcct caacaaagtc tatatttctc tccaaaataa ccttcaactc
    23341 cttcaaccac tcatctccat aagtgaaagc agcttctgtg gttaacaagc caatcgttgg
    23401 aatctcgtgc tgattattta tcaattgacg cttagcgaaa gtcttgcgaa tgcttggatt
    23461 ttcaatgatt gcaaagctat tttttgtacc agcgatattg aaggtcttgg tcgcagatga
    23521 taagatgatt gaaaactctt taaaactttc atccactgtg ttaaaggaat aatgcttgtg
    23581 accatacaag atcaaatctt gatgtatttc atctgagata aggataacac tatgtttctg
    23641 acaaagacgt ccaatggcca acacttcctc tcttgtccaa actctaccac ctgggttgtg
    23701 gggattacag aaaatataga gtttcacttg attctctaca atgtcctttt caagctggtt
    23761 aagattaagc ctaaaaatac catccacatc tacaagtgaa ttggcgacta gctgacgatt
    23821 gtttaatttg acagtccgcg caaagggtgg atagacaggc gtattaatta ggactgcatc
    23881 cccttcttct gtcaaagatt gaatagccat agataaggca ggaacaactc cttcaatgag
    23941 taggatggac tctctttcaa tcttatagcc atgctgtcta tcttcccagt caataataga
    24001 ctgatagagg ctatcactag cataaggata accaaaaaca tgatgatctg cgtagtcacg
    24061 gattacttgg cgaatttctg gtagaggctc aaagtccata tctgctatcc acaagggtaa
    24121 gagttcttta tccgtctcta cttttctcca tttttccgca tgctgggata gacgattcgg
    24181 actatctata aaattatact gtgtcatatc ttatccctcc aaggctgtct ttaaatctgc
    24241 aatcaagtct tccgcatcct caataccaat tgacaaacga agaagatcat ctgtcaatcc
    24301 ataagaatgg cggatttcag caggaatgtc tgcgtgggtc tgagtggctg gataggtaat
    24361 cagactctct actccaccca gactttcagc aaaggtaaag actttcaggg tgttgagaat
    24421 atggggaatc cgactttcat ctaccacctt aaccgaaatc atcccacctt ttcctgtgta
    24481 gtaaacttgc ttgactgctg gactcttctc caaataggca acaattttct gagcattttg
    24541 tgtcgtccgc tccattcgaa gcgagagggt tttgagtcca cgcatgagta agtaagaatc
    24601 cagtggagat agggttggac ccgatgtatt ttggtcataa aagagcttat catataggtc
    24661 ttgatcattg gtcatcaaag cgccagctag tacatcatta tgcccagata ggtacttggt
    24721 tgctgaatgt aggacaacgt ccgctcctag aacaagtgga ttttgataaa tagggctgta
    24781 aaaagtgtta tcgacaatca ccttagcacc tttggcatgg gcgatagccg aaaccttagc
    24841 gatgtcaaac tccaccatga gtgggttagt cggtgtctcc agataaacat agtctgtctc
    24901 ttcggtgatg gctgcaatca gctcctcctc ggtgtttgca taggtaaatt gaaatctacc
    24961 gatactctct tgctcattga accagcggaa ggaaccaccg tacaaatcac gcgccgctac
    25021 cacttgactc cctacaggaa aaccattaaa aagtaagacc agagcagcca ttcccgagct
    25081 cgttgctagg gcatagtcgg ccttttcaat agctgccaaa gtcgtctcta gactggcacg
    25141 tgtcggattt tttgttctcg tgtagtcata acctgtcgat tgaccaaact cagggtgttg
    25201 ataggtcgtc gaaaggtgga taggggaaat caaggcacct gttctctcat cgctattgat
    25261 gcccgtatgc gctaaaatcg tatcaatctt ataatctgtc ataacatcta ctccaatcta
    25321 acttacaata tagtctagca tgaaatagga gatttggtgt gaaaaatatc caaaaatact
    25381 tatagaaaaa tagggagcct tgttatag
//
LOCUS       DASGBY010000015        24745 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.015, whole genome shotgun sequence.
ACCESSION   DASGBY010000015 DASGBY010000000
VERSION     DASGBY010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 24745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24745
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.015"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(30..1013)
                     /locus_tag="U1396_000482"
     CDS             complement(30..1013)
                     /locus_tag="U1396_000482"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM5341696.1"
                     /translation="MTATKQHKKVILVGDGAVGSAYAYALVNQGIGQELGIIDINKDR
                     TQGDAEDLSHALAFTFPKKIYSAEYSDAHDADLVVLTAGLPQKPGETRLELVEKNLRI
                     NQQIVTEIVNSGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQAL
                     AEKIGIDARSVHAYIMGEHGDSEFAVWSHANVAGVKLYDWLQDNRDIDEQGLVDLFVS
                     VRDAAYSIINKKGATYYGIGVALARITKAIFDDENAVLPLSVYQAGQYEGVEDVFIGQ
                     PAIIGAHGIVRPVNIPLSDAELQKMQASAKQLKDIIDDAFANPEIAAGVKN"
     gene            1202..3646
                     /gene="gyrA"
                     /locus_tag="U1396_000483"
     CDS             1202..3646
                     /gene="gyrA"
                     /locus_tag="U1396_000483"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEM5341697.1"
                     /translation="MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHR
                     RILYGMNELGITPDKPHKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVD
                     GHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPAR
                     FPNLLVNGTTGIAVGMATNIPPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTG
                     ALVMGKSGIHRAYETGKGSIVLRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVK
                     LVQEKRIEGITAVRDESNREGVRFVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAI
                     QNGVPKILSVRQILESYIEHQKEVVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIR
                     IIRNSETDAIAQAELMEKFDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIAD
                     LADILAKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLS
                     NQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRL
                     KGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTS
                     VSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRT
                     ATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLK
                     VADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKI
                     MTFALVDAAEIKEEKE"
     gene            3653..4402
                     /locus_tag="U1396_000484"
     CDS             3653..4402
                     /locus_tag="U1396_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HEM5341698.1"
                     /translation="MSKREKKKKRKGSFWRNFLTVVLILISLALIFNTSIRNFIIGWN
                     TNKYQISNVTTEDIEKNKQAETTFDFEQVQSISTEAILAAQWDAQRLPVIGGIAVPEL
                     GINLPIFKGVFNTSLMYGAGTMKENQEMGKGNYALASHHIFGVTGAADVLFSPLDRAK
                     NGMKIYITDKTNVYTYVIDSVEIVSPESVYVIDDVEGRTEVTLVTCTDYYATQRIVVK
                     GVLESTTPYNETAKDILDSFNKSYNQYDYGQ"
     gene            4516..5196
                     /gene="radC"
                     /locus_tag="U1396_000485"
     CDS             4516..5196
                     /gene="radC"
                     /locus_tag="U1396_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM5341699.1"
                     /translation="MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPV
                     SILSNKLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKAMIELGKRINQSELLLNE
                     RILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
                     YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYS
                     FREESELF"
     gene            complement(5193..5885)
                     /locus_tag="U1396_000486"
     CDS             complement(5193..5885)
                     /locus_tag="U1396_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5341700.1"
                     /translation="MKKPVIGISGNEYKTGDHTEPLLSYTQTCLVQAIEDAGGLPLIL
                     PVTEPDLAKYYIHLIDKLILTGGQNVQPSYYREERTIDSDNYLPKRDEFELAIIRAAQ
                     ENQKPIFGICRGLQLYNVAQGGSLHQSISEHWQDIDGQEVSQTIQLTQNSPLYDIYES
                     DPSVNSFHRQAIKDLAPDLEIIALSDNQQIIEAVHSAYPTKFLGVQWHPELLYGKREI
                     EKELFHYIVNKL"
     gene            complement(5889..6527)
                     /locus_tag="U1396_000487"
     CDS             complement(5889..6527)
                     /locus_tag="U1396_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEM5341701.1"
                     /translation="MKNDKKSDIPRATAKRLSLYYRIFKRFYAGNIEKASSKEIAEAI
                     GIDSATVRRDFSYFGELGRRGFGYNVKELMDFFADILNDTSITNVMLVGVGNMGRALL
                     HYRFHERNKMKIVMAFEADDNPAVGTTDENIPIHAISEIKERISEANSQTAILTVPSV
                     KAQEVTDILVEAGVKGILSFSPVNLSVPKDVVVQYVDLTSELQTLLYFMRKG"
     gene            complement(6662..6865)
                     /locus_tag="U1396_000488"
     CDS             complement(6662..6865)
                     /locus_tag="U1396_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4649 family protein"
                     /protein_id="HEM5341702.1"
                     /translation="MIEIHYLDAYKQERIQTFENKDATILAFSGCLTLPDYYPVTSIT
                     QDGQALDYKGTIGDLYRYLQTLD"
     gene            complement(6867..7211)
                     /locus_tag="U1396_000489"
     CDS             complement(6867..7211)
                     /locus_tag="U1396_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1831 domain-containing protein"
                     /protein_id="HEM5341703.1"
                     /translation="MAFQQSVTLKDCNFTYHISPAIKKYTLRDNTFEQTKAGHYQLTR
                     LLEEIPNSNQGFLLKIIINQDLTGFKINITDKSGLHLVNIFKPESNKVIQEKFYFLMD
                     SLIDRDIFTKES"
     gene            complement(7213..8328)
                     /locus_tag="U1396_000490"
     CDS             complement(7213..8328)
                     /locus_tag="U1396_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5341704.1"
                     /translation="MIYLDNAATTALSPTALQRMMEVAQENYGNPSSIHQSGRKANQR
                     LRQSRQEIAQILSASPEQIIFTSGGSEADTLAIQGYALAHQSKGKHLITTAIEHHAVL
                     HTMQYLEERFGFEVTYIQPVDQVITAQQIQDALRPDTILVSVMFANNETGQLLPIKEI
                     GELLADHQAVFHVDAVQAIGKIAISPSNYGIDLLAASAHKFHGPKGTGFLYSKVHKFD
                     SLIHGGKQEQQHRAGTENLPAIAAMATALTEQYESLDTHHQHVSELRQHIIEGLSGLD
                     YYLNQAGPHLPHVLNIGFPGKLNEQLLMQLDLAGIAVSSGSACTAGVVQNSHVLEAMY
                     GKDSHRLKESIRISLSEINTKEEIDTLIIELKKILGG"
     gene            complement(8339..9316)
                     /locus_tag="U1396_000491"
     CDS             complement(8339..9316)
                     /locus_tag="U1396_000491"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM5341705.1"
                     /translation="MVQPLGEHNIKLFSLNSNRDIAEKIADSAGIPLGKLSSRQFSDG
                     EIQINIEESVRGVDVYIIQSTSYPVNNHLWELLIMIDACKRASANTITAVIPYFGCAR
                     QDRTASPREPITAKLVANMLVKAGVDRVLTLDLHASQIQGFFDIPVDNLLTEPLFAAY
                     YMEKGLCGEDVVIVSPKNSGIKRARNIAEFLNAPIAIIDYAQDDSERSEGYIIGDVAG
                     KKAILVDDILNTGRTFSQASKIVQEGGATEIYAVASHGLFTGTATQLLDEAPIKEILV
                     TDSVASKEQHPKNIAFLTASDLIADAIHRIQEHQPLSPLFKFTSPEKEN"
     gene            complement(9461..10027)
                     /locus_tag="U1396_000492"
     CDS             complement(9461..10027)
                     /locus_tag="U1396_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEM5341706.1"
                     /translation="MKNHLEIEYKTLLTKSEYKRLLTDFSDVSPILQTNHYIDTPDLD
                     MKNHRFSLRIRTFEDSAELTLKIPQEVGNQEYNQVLDIQTAHDLLENFQLPAGQISDI
                     ISATEIPLDKLAVWGILTTKRYEKQTSIGLMALDENDYVGQKDYELEVEVTDADAGKI
                     LFDEFLKKKSIQFKYASSKVARTAAHMK"
     gene            10114..10785
                     /locus_tag="U1396_000493"
     CDS             10114..10785
                     /locus_tag="U1396_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM5341707.1"
                     /translation="MDFNWEEFLDPYIQTVGELKIKLRGIRKQYRKANRHSPIEFVTG
                     RVKPIESIKEKMALRHIKLENLAQDMQDIAGLRIMVQFVDDIEEVLAILRKRKDMQIV
                     HERDYINNMKASGYRSYHVVIEYPVDTINGNETVLAEIQIRTLSMNFWATIEHSLNYK
                     YKGNFPEEIKKRLEVTAKIAYELDEEMRKIRNDIQEAQALFDPAYRKLNDGVGNSDDT
                     DEEYR"
     gene            10760..11587
                     /locus_tag="U1396_000494"
     CDS             10760..11587
                     /locus_tag="U1396_000494"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM5341708.1"
                     /translation="MIQMKNTGRKKIALLASRNPKSEAVSKELWTKLKEANFILTPKN
                     PDIVISIGGDGMLLSAFHKYEKLIDRVRFVGIHTGHLGFYTDYRDFEVDKLIENLKLD
                     TGARVSYPILNVKVKMTDGRIVEARALNEATVKRLSKTMVADIIINNVPFERFRGDGI
                     SVSTPTGSTAYNKSLGGAVLHPTIEALQIAEVASLNNRVYRTLGSSVVVPKKDKIVIE
                     PKHSDRYSIAVDNKTFVYDSIESIEYQIDNSKIHFVATPSHTSFWNRVKDAFIGEVE"
     gene            11587..12480
                     /locus_tag="U1396_000495"
     CDS             11587..12480
                     /locus_tag="U1396_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5341709.1"
                     /translation="MRFEFIADQHTKIKTFLKKHGVSKGLLAKIKYTGGNIWVNDIEQ
                     NATYLLDIGDRVTIDIPAEEDLTGSLKPIFFPLDIVYEDDHFLSINKPVGYASIPSAL
                     HSSTIANFVKGYLIEQNYENKQVHIVTRLDRDTSGVMLFAKHGYAHARLDKQLQAKLI
                     HKRYYALVKGNGQLEETGDIIAPIGRPEDSIITRCVTKNGKYAHTSYRVVQSWGDIHL
                     VDIQLHTGRTHQIRVHFSHIGFPLLGDDMYGGSLECGIERQALHCHNLAFDNPFSAER
                     IDLEAPLPEDFQAVINQLISK"
     gene            12498..13472
                     /gene="pta"
                     /locus_tag="U1396_000496"
     CDS             12498..13472
                     /gene="pta"
                     /locus_tag="U1396_000496"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM5341710.1"
                     /translation="MKIFEQLATKLEGKKVRIVLPEGEEPRILQATKRLVNESDVVPV
                     LLGNPDRIKIYLDIEGITEGFEIIDPAHYDRYDEMVAALVERRKGKVSEEQAHELLKD
                     VNYFGVMLVYMGVVEGMVSGAIHSTASTVRPALQIIKTEPGVSKTSGAFLMVKGEERY
                     IFGDCAINIDPDAQTLAEIAINSARTAKMFGIDPKVAMLSYSTKGSGAGPKVDKVVEA
                     TKIAQKLRPELDLDGELQFDAAFVPTTGKLKAPGSSVAGQATVFIFPGISAGNIGYKI
                     AERMGGFAAVGPVLQGLNQPVNDLSRGCNPDDVYNLTLITAVQALEHR"
     gene            13474..15210
                     /locus_tag="U1396_000497"
     CDS             13474..15210
                     /locus_tag="U1396_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341711.1"
                     /translation="MKFLSRYFKDYIKESILGPVFKLLEACFELLVPLIIAYIVDTII
                     PNGSQGNLVAMLFLLVGLACIGIIVSLIAQYYSAKAAVGVTKELTNDLYQKVLSLPKS
                     SRDILSSSSLLTRLTSDTLQIQTGINTFLRLFLRAPIVVFGSLIMAFYISPSLSAYFL
                     EMIILLIFIVTVISVMTSRIYQSMRKELDGLVGQVRETVTGWRVIRAFGQREREIKAF
                     QGINQIYKKQQLQAGFWSSLLSPLTFLVVNGTLLILIWQGNIAISHNLLEQGMLVALI
                     NYLLQILVELVKMIMVVSTLNQTYISAQRIQEVFDQTSEDVESSLPKVVSEDKEIIFS
                     VRHISFSYPKSAEESLSDIAFDLRKGQFMGIIGGTGSGKSTLVDLLQALYSVPTNQLS
                     LFIDGKSPKNLKEWRQQIAIVPQQAQLFAGTVRSNLSLGLESVLDSELWAALEIAQAK
                     SFIEDKGGLDSPVEAFGKNFSGGQRQRLTIARAILQKAPILVLDDATSALDYLTESRL
                     LAAIRRAFPAQTLIMVSQRTNSLRTADQILVFDQGRQVGLGRHEDLLRSSAIYQEIDQ
                     SQHREEDSHETI"
     gene            15197..16939
                     /locus_tag="U1396_000498"
     CDS             15197..16939
                     /locus_tag="U1396_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341712.1"
                     /translation="MKQSSFKELVRLVLGQPFQMYLMLVGTLVQVLLTVYLPILIGQA
                     VDAVLIADGQVLLGIIGKMVMVILLNTLVQWYLPLVTNRLVYGMVADLREQVYVKLHQ
                     MPLSYLDRHSVGDLVARFSSDSEQLTNGLLMVFNQFFIGILTIFLTIFTMARLDLTMM
                     LLVVALTPVSLLVARYIAKKSYGYYRKQTQARGKQSQLLEESISQLTLVQSFNAQEQF
                     TQGFQVVNDQYATYSQQAIFASSTVNPSTRFINAIIYALLAGLGALRIMAGQFTVGSL
                     TTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSIDDQAERKIDSEELKG
                     AISFDNVSFSYSPERSLIEHLDIDVEAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQ
                     IVLDGVPIRQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAAN
                     ADFFIRQLPQGYDTVLADGGEGLSQGQRQLLSIARVFVKIPKILILDEATSSIDTRTE
                     ILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAEQGVYYQ
                     MQTSQQTEEDESVR"
     gene            16923..17315
                     /locus_tag="U1396_000499"
     CDS             16923..17315
                     /locus_tag="U1396_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEM5341713.1"
                     /translation="MKVLDKLNLQPITVLDDYQATMLNEKEVLLTTKVTEKSLNPYGM
                     AHGGFLFTLADSVAGLTTVVGGSYSVTLQSNIHYMKAAKLGDTLSVTGSCTHDGSRTK
                     VVEVKIKNQDKQLLASASFTMFVTGKVE"
     gene            17550..18710
                     /gene="mutY"
                     /locus_tag="U1396_000500"
     CDS             17550..18710
                     /gene="mutY"
                     /locus_tag="U1396_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEM5341714.1"
                     /translation="MLDLKEYGIEMWPEEKIQAFRKALLDWYDANKRDLPWRRTKDPY
                     AIWVSEIMLQQTRVDTVIPYYERFLHYLPTISDLAQAPEEVILKLWEGLGYYSRVRNM
                     QKAAQQMVEDFDGQFPTTHAAISSLKGIGPYTAGAISSIAFNLPEPAVDGNVMRVLSR
                     LFEVDYDIGLPANRKIFQAMMELLIDPERPGDFNQALMDLGSDIESPVNPRPQDSPVK
                     AFSAAYLNGTMDKYPIKAPKKKPIPVAYQGFLIRNKDNQFLLEKNNEAGLLSGFWSFP
                     LLEKGAIVEKQVSLFEVAEEVVQPDIRQSFTELYGLTVDWQEQEFGIVQHIFSHRKWQ
                     IEMVEGVAETLNLPESKELKWVSVEDFPTYPFAKPQQKMWENFIKEKEKQKS"
     gene            complement(19373..20173)
                     /locus_tag="U1396_000501"
     CDS             complement(19373..20173)
                     /locus_tag="U1396_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5341715.1"
                     /translation="MILGDILKEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTK
                     KALLPTMDTLEKVAKGMAISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVQTLD
                     NELKGDFHAQWLTFGQEQLAAMQTTSITPSASILHLDDYRERIDLPVPGKVSAGTGYW
                     QDTDMNNLVSFYNDEIPDNQSYDTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGI
                     FSVNGENFVKKFKGDYLQSLNSDYDDIYFSPEDDIRPIGQVVDIYSPD"
     gene            20305..20775
                     /locus_tag="U1396_000502"
     CDS             20305..20775
                     /locus_tag="U1396_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341716.1"
                     /translation="MKRMTEISWNDIYKEWETYANHFGLTTPINTENLRDQKSKDFGK
                     GSLITLDLLADYDTDSEKTAAIWVASFCRDLIQDYAYLLNGRAYLTVNQIYFQALKQF
                     QSGAVIWSKPITRLQPKLFVSYRLLENLDLSHYSCVVELAMLQASMVRTQILEK"
     gene            20795..21337
                     /locus_tag="U1396_000503"
     CDS             20795..21337
                     /locus_tag="U1396_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341717.1"
                     /translation="MFNLLNKKAEVSKVAEYWNDTLIERGILSADELLEGKCWRCKSS
                     HGVAVCQIVSSKWSKDASLANQMVLCLSCQHEKPNVADTEIVWQWLEVENDERYWTLQ
                     GMAEYEKMYKKSVLQELWDMGIRDGEEVETLVNKVTSLSRKNDIVLNRATLAGLFRCE
                     IEQMRRKAFLNWTGIFKLVS"
     gene            complement(21563..22594)
                     /locus_tag="U1396_000504"
     CDS             complement(21563..22594)
                     /locus_tag="U1396_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004269878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM5341718.1"
                     /translation="MATITKRGNSYRATVSLYKKGEYKRETKTFSNRKDAELWTLEME
                     LEKGRGKNIAERSTLFPDFYRNWVHTVKKTDVREATFINYKRTLVIVDDLFDGIQLKH
                     LDDLVMQKKIDQYAETHSKKTVKELVLKIRGSLKYAYARGLISNDFGHLLKSKGQEQP
                     KSITEFKKLRQYCLSHTENEFNVLVALALETVARRGELLGIKKEDIFEYGIKILRSIS
                     PTNDDTRLKTKYSKRDISINEDVYQAVTKLAQTKEGYIFDWNGFKQASQLQKLLKQLG
                     LTKTTFHGLRDTHASFLFSKDISLDYISRHLGHNSILTTQQYYLELMPEKKHQQDADA
                     LSLLNDLSL"
     gene            complement(22963..23718)
                     /locus_tag="U1396_000505"
     CDS             complement(22963..23718)
                     /locus_tag="U1396_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341719.1"
                     /translation="MALGNVEKDTEGWIELINQYLQYCIEIGLSPYTQATYKVALTKV
                     LGVSSTNFIATQPRTRANRMNNRVLHKDYRLSNKNNDYWHKVVTSTGLRKSELIHVTG
                     DALQRGRDGRWYLNLAGHKHHTKGRRDRWSPIMATSQEEEEWLVAIFQRAGEKKVFHV
                     PKDLILDDFDGKKVPTALKSHKYPTEYAERVYRSVAREISKIRNRKEVIHLRKELVGI
                     SLNRKACKIVIKTLGHNRPEEFPRSYAYILLKR"
     gene            23997..>24745
                     /locus_tag="U1396_000506"
     CDS             23997..>24745
                     /locus_tag="U1396_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5341720.1"
                     /translation="MNKRERLEEITRLVNKKGTVRISEIVELLNVTDMTVRRDFIELE
                     EQGVLTKIHGGARSNKAFQYREYSHSEKHIQNKEAKQEIAERAAQLIEDGDTVFLGPG
                     TTVAFLAEAIKNSRLTVITNCMPVFTILSQKKTEEFQVFLLGGEYRQVTESFVGEITN
                     TSLEKMRFSKIFFSGNGLKGTDVMTSTLAEAYTQNIAIKHSLEKYLLLDASKIGKDDF
                     TSFCDLHDVTALVTDMNAKDENYQLLSKHIE"
BASE COUNT         7334 a         4396 c         5399 g         7616 t
ORIGIN      
        1 ttgctcacct tttttactat tttatataat tagtttttaa caccagctgc aatttctggg
       61 tttgcgaaag catcatcgat gatgtctttt aattgtttag cagatgcttg cattttttgc
      121 aattcagcgt cgctcaatgg gatattgact ggacgaacga taccgtgggc accgatgata
      181 gcaggttgac cgatgaagac atcttcaaca ccttcgtatt ggccagcttg gtaaactgac
      241 aatggaagta ctgcattttc atcatcaaag attgctttag tgatacgtgc aagtgcaaca
      301 ccgataccgt agtaagttgc gcctttttta ttgatgattg agtaggctgc atcacgaaca
      361 gatacaaaca agtcaacaag accttgctca tcaatatcgc ggttatcttg caaccagtcg
      421 tacaatttca caccggcaac gttggcatgt gaccaaactg caaattctga gtcaccgtgc
      481 tcacccatga tgtaagcgtg aactgaacgt gcgtcgatac cgattttctc agccaatgct
      541 tgacggaaac gagctgagtc aagagaagta ccagaaccga taacacgctc tttagggaaa
      601 ccagagaatt tccaagttga gtaagtcaat acgtcaacag ggttagcagc aacaaggaag
      661 ataccgttga aaccagagtt aacgatttct gtaacgattt gttggttgat acgaaggttt
      721 ttctctacca attcaaggcg agtttcacct ggtttttgtg gcaaaccagc tgtcaataca
      781 accaagtctg cgtcatgagc atctgaatac tcagcagagt agattttttt agggaatgtg
      841 aaggccaatg cgtggctcaa gtcttctgca tcaccttgag tacggtcttt gttgatatcg
      901 atgataccca attcttgacc aatcccttgg ttaacaagag cataagcata agcagaacct
      961 acggcaccgt caccgacaag gattactttt ttgtgttgtt tagttgcagt cattgctaaa
     1021 catctcctta gttttatttg gggatgactt catcccgacc ataatacatt ctagcatgtt
     1081 ttaagctttt tgtcacttgt gaaagcgcct ttgaaaatgt ttacatgcta gtttccaaca
     1141 aagaaattta ttcgccaata tggtataata gaagcacaat gactgttgaa agaggcatat
     1201 aatgcaagat aaaaatttag taacggttaa tctgaccaat gagatgaaat catccttcat
     1261 cgactatgcg atgagtgtta tcgtttcacg tgctctgcct gatgtacgtg atggtctgaa
     1321 gccggttcat cgccgtattt tgtatgggat gaatgaatta ggaattacac cggataaacc
     1381 acataaaaaa tcagcccgta tcacagggga tgttatgggt aaatatcacc cgcatggaga
     1441 tagtgcgatt tacgaagcaa tggttcgtat ggcacaatgg tggagctacc gtcacatgtt
     1501 agttgatggt cacggaaact ttggttccat ggatggcgac ggagcagccg ctcagcgtta
     1561 tacagaagca cgcatgagca agattgcgct tgaaatgctt cgtgatatta acaagaacac
     1621 ggtaaatttt gcagataact atgatgcgag tgaacgtgag cctgaggttt tacctgctcg
     1681 tttccctaac cttctggtta acggaacgac tggtatcgcc gttggtatgg ctaccaacat
     1741 tcctccacac aacttgggtg agactatcga ggcagttaag ctggttatgg acaatcccga
     1801 ggtaacaaca cgtgagatta tggaagtctt gcctggacca gattttccga caggtgcctt
     1861 ggttatgggg aaatctggaa ttcaccgtgc ttatgaaact ggtaaaggtt caatagttct
     1921 tcgttcccgc acagaaattg aagaatatgg aaatggtcgt gaacgcattg ttgttacaga
     1981 gtttccatac atggtcaata agtccaaggt tcaagaacat attgttaaat tagtccaaga
     2041 aaaacgtatt gaaggaatca ctgctgttcg agacgaatcc aaccgtgagg gtgtacgatt
     2101 tgttatcgaa gttcgtcgtg atgcttctgc taacgttatt ttgaataacc tattcaagca
     2161 aacacagctt caaaccaact ttagtttcaa catgttggcc atccaaaatg gtgtaccgaa
     2221 aatcctttct gtacgtcaga ttctagagtc ttatattgaa caccaaaaag aagtagtcac
     2281 tcgtcgtaca cgatttgata aagaaaaggc tgaggcgcgt gctcatatct tagaaggctt
     2341 gctgattgct cttgaccata ttgatgaagt cattcgtatt atccgtaatt cagaaactga
     2401 tgctattgct caagctgaat tgatggagaa atttgacctt tctgtacgtc agagtcaggc
     2461 tattcttgat atgcgtcttc gtcgtttgac aggtttggaa cgggacaaga ttcaatcaga
     2521 atatgatgag ttagtggcgt tgattgcaga tttggctgac attctagcta agcctgagcg
     2581 tgttgttcag attattaaag acgaattaga agaagtcaaa cgtaaatatg ctgacccacg
     2641 ccgtacagaa ttgatggttg gtgaagttct atcccttgaa gatgaggact tgattgaaga
     2701 aacggatgtt ttaatcacct tgtcaaacca aggctacatc aagcgtttgg cacaggatga
     2761 gtttcaagct cagaagcgtg gaggacgtgg ggttcaagga actggcgtca aggatgatga
     2821 ttttgtacga gaattagtct ctacaagcac tcatgatcgc ttgctcttct tcactaataa
     2881 gggacgtgtt taccgtctca aaggctatga aatcccagaa tatggtcgta ctgcaaaggg
     2941 acttccagtg gtcaatttgc ttaaattgga agaaaacgag gcaattcaaa ccattatcaa
     3001 tgtaactaag gaccaggagg cagatagcta tctcttcttt gcaacccgcc aaggtgttgt
     3061 aaaacggact agtgtgtcag aatttgccaa tattcgtcag agtggtctga aagctttgaa
     3121 tttgaaagaa gacgatgaac tcatcaatgt tttcttaaca aatggtcaag cagacattat
     3181 tatggggact aagttcggtt attctgtacg tttcactgaa acagatgttc gtaatatggg
     3241 ccgtactgca acaggtgttc gtggtatcaa tttacgcgag ggagaccagt tagttggcgc
     3301 tactatgatt tctgatgacc aagaagtact cgtattgacg gaaaaaggtt ttggtaaacg
     3361 tacaccagcc agtgagtatc caaccaaagg tcgtggtggt aagggtatca agactcttaa
     3421 agttgctgat aagaatggtt ctctggcagg tttgacaacg gtatctggtg atgaagatat
     3481 tatggttatt accgatactg gtgtgattat tcgtacaagt gttgccaata tctctcaaac
     3541 tggtcgttca accatgggtg taaaagtgat gcgcttgaat gatgaagcga aaatcatgac
     3601 ctttgccttg gtagatgctg ccgaaattaa agaagaaaag gaataaataa tcatgtcaaa
     3661 acgtgaaaaa aagaagaagc gtaaaggttc tttttggcgc aattttttaa cagttgtatt
     3721 gatactgatt tccttggcat tgatatttaa tacctctatc cgtaatttta ttatcggctg
     3781 gaatacgaat aaataccaga ttagcaatgt tacgacagag gatatcgaaa agaataaaca
     3841 ggctgagaca acatttgatt tcgaacaggt tcagtctatt tctacagaag ctattttagc
     3901 agctcagtgg gatgcacaac gcttacctgt aattggtggg attgcggttc ccgagcttgg
     3961 tatcaacctt cctattttta aaggggtctt caatacttcg ctcatgtatg gagctggtac
     4021 catgaaggaa aaccaagaga tggggaaagg aaattatgcg ttggccagcc accatatttt
     4081 tggtgtaact ggtgcggcag atgttctctt ttcaccgctt gatcgtgcta aaaacggcat
     4141 gaaaatctat attactgaca agaccaatgt ttacacctac gttattgata gtgtggaaat
     4201 tgtttcgcct gaaagtgtct atgtcattga tgatgtagaa ggacgtacag aagttacgtt
     4261 agtgacatgt acggactatt atgctacgca acgtattgtt gtaaaaggag ttcttgaatc
     4321 aaccactcca tataatgaaa cggcaaaaga catcttagat tccttcaata agagttataa
     4381 tcagtatgat tatggacaat aaaacatcta tatattaagg ataaagaagt ggtataggac
     4441 tgaggagata atctttggtt ttatatggct tctttttttg caagatttta cgaatagata
     4501 ggtgaggagg aaatgatgta tcaaattgaa ttcaaagaag aggccattct acctagagaa
     4561 cgtttggtag aagttggagc tgagcgtctc agtaatcagg aactactagc aatttttatt
     4621 agaactggga caaaaaaaga acctgtttct attctctcca ataaattatt gaatcgtttg
     4681 gagagtttag cggctctaag agaactatca attgaagaat tgcaaagttt gactggaatt
     4741 gggcgcgtca aggcgattga aattaaggct atgattgaac ttggaaaacg tatcaatcaa
     4801 tcagagctgc tcttaaatga gagaattttg ggaagtgaga agttgggacg taagatgatt
     4861 catgaaatcg ggcataagaa gcaggagcac ctagttgcac tttatctcaa tacacagaac
     4921 cagattatca gtcaaaaaac gatttttatt gggagtgtta atcgtagcat tgcagaacca
     4981 cgtgaaattt tgcattacgc agtaaaatgt atggcaacat cgattatcat cgttcacaac
     5041 cacccgtcgg gttcagtaca acctagtagg aatgatttgc tatttacgga gaatttaaaa
     5101 gagtcctgcg aaaagctagg actggtatta ttagatcatt taattgttgg aaataaggat
     5161 tactattctt ttagagaaga aagtgagtta ttttaaagtt tattgacaat atagtggaag
     5221 agttcttttt caatctcacg tttaccgtag agtagttcag gatgccattg aacccctaaa
     5281 aatttagttg ggtaggctga atgaactgct tcaataatct gttgattatc tgatagtgca
     5341 atgatttcta agtcaggggc taagtctttg atagcctgac ggtgaaatga gttcacactc
     5401 ggatcggact catatatgtc gtaaagtgga ctattttgag tcagttgaat cgtttgacta
     5461 acttcttgtc catctatgtc ttgccaatgt tcagaaattg attgatgaag gctaccacct
     5521 tgagctacat tgtagagctg tagacctcgg cagataccga agataggttt ttgattttct
     5581 tgggcagccc ttatgatggc caattcaaac tcgtcacgct ttggtagata attatcgctg
     5641 tcaatagttc tttcttcgcg atagtaactt ggctggacat tttgtcctcc tgttaggatg
     5701 agtttgtcaa taagatggat ataatatttt gccaaatctg gctctgtaac aggaaggatg
     5761 agtgggagcc cgccagcatc ttcaatagct tgtacgaggc aagtttgggt ataagaaagc
     5821 aggggttctg tatgatcccc tgttttatat tcatttccag aaataccaat aactggtttt
     5881 ttcattgctt atccttttcg cataaagtag agtagtgtct gtaattcact agtcaaatca
     5941 acatactgga caacgacatc ttttgggaca gacaagttaa ctggtgaaaa gctcagaatt
     6001 cccttgacac cagcttcaac aagaatatcg gtcacttctt gtgccttgac gctgggtacc
     6061 gttagaatgg ctgtctgaga gtttgcttcg ctgatacgtt ccttgatctc tgagattgca
     6121 tggattggga tattttcatc tgtcgttcca acagctggat tatcatctgc ttcaaaagcc
     6181 atgactattt tcattttatt tcgttcgtgg aagcgatagt gtagcaaggc ccgccccata
     6241 ttcccaacac caacaagcat aacattggtg atggaggtat catttagaat atctgcaaag
     6301 aaatccatca actctttgac attgtagcca aagccacgac gcccaagctc tccaaaatag
     6361 gaaaaatctc ggcggacggt agccgaatcg attccgatag cttcagcaat ttcttttgaa
     6421 ctagcttttt caatatttcc agcatagaaa cgtttaaaaa tgcgatagta gagggataga
     6481 cgtttggcag tagcgcgtgg aatatcagat tttttatcgt ttttcacttt agactccttt
     6541 atttcgatag aatacgcttt atcgattatt tatatattaa acagttcttt attctattct
     6601 agtccaagtt tgtgaaaaaa tcaacagatt gattttaaaa aaagattaaa caggaaactg
     6661 tctaatctag tgtttgtaaa tagcgataga gatctccgat tgtccctttg taatccagag
     6721 cttgtccgtc ttgtgtaatg ctggtaactg gataatagtc tgggagggtt aggcaaccgg
     6781 aaaaagccag aatggttgca tccttattct caaatgtttg gatacgttct tgcttgtaag
     6841 cgtcaagata gtgaatttca atcatactaa ctctcttttg taaagatgtc acggtcaatc
     6901 aagctatcca tgaggaaata gaatttttct tgaataacct tgttactttc tggcttaaaa
     6961 atgtttacca gatgaagacc agacttgtcg gtaatgttaa ttttaaaacc agttaggtct
     7021 tgattgataa taattttcaa gaggaatcct tggtttgaat ttggaatctc ttccagaaga
     7081 cgtgtaagct gatagtgacc tgctttggtt tgttcaaagg tgttatcacg gagtgtatat
     7141 tttttgatag cagggctaat gtgataagta aaattacaat cttttaaggt aactgattgt
     7201 tggaatgcca ttttaacctc caagtatttt ctttagttcg atgataagag tatctatctc
     7261 ttcttttgta ttgatttcag ataggctgat acgaatggat tctttcagac gatgggagtc
     7321 ttttccatac atagcttcta aaacatggct attttggaca acacctgccg tacatgcaga
     7381 accactagaa acagcgatac ctgctaaatc tagttgcata aggagttgtt cattaagttt
     7441 accaggaaaa ccgatattaa ggacatgagg gagatgaggt ccagcctgat tgagataata
     7501 gtctaagcca gacaatccct cgataatatg ttgtcgcagt tcactgacat gttgatgatg
     7561 cgtatctaag gactcatatt gttctgttag ggcagtcgcc atagcagcaa tagcagggag
     7621 attctcagta cctgctcgat gttgctgttc ctgctttccg ccgtggatca aggaatcaaa
     7681 tttatgaact ttactataca ggaatcccgt tccctttgga ccatggaatt tatgggcaga
     7741 ggccgcgagc aagtcaattc cgtagttaga tggagatatt gcgatttttc caattgcttg
     7801 gacagcatct acatgaaaga cggcctgatg atcggctagg agttctccaa tttccttgat
     7861 gggaagtagc tgaccggtct cattgttagc aaacatgacg ctgactaaaa tagtatctgg
     7921 ccgaagggca tcctgaattt gttgagcggt gattacttgg tcgactggtt ggatataggt
     7981 tacctcgaac ccaaaccgtt cctctagata ctgcatggta tggaggacag catggtgttc
     8041 gatagccgta gtaatcaggt gttttccttt ggattgatgc gcaagtgcat agccttgaat
     8101 agctaaagta tcagcttcgg agcctccaga tgtgaaaata atttgttcgg gagaggcgga
     8161 gagaatctga gcaatctctt gacgactttg tctaagacgt tgattggctt tccgaccgct
     8221 ttgatgaata ctggaggggt ttccataatt ttcttgagcc acttccatca tccgttggag
     8281 tgcagtagga gatagagcag tggttgctgc attatctaaa taaatcaaag agttactcct
     8341 agttttcttt ttcaggacta gtaaatttga aaagtgggct gagtggctga tgttcttgga
     8401 tgcggtggat ggcatctgca atcaagtcac tagctgttag gaaggcgata tttttaggat
     8461 gctgttcttt gcttgcaaca gaatcggtaa ctaatatttc tttgattggt gcttcatcta
     8521 agagttgggt tgcagttcca gtaaagagac cgtggctggc aactgcataa atttcagtag
     8581 caccaccttc ttggacaatt tttgaagctt gtgagaaagt gcgaccagta ttgagaatat
     8641 cgtccaccaa aatagctttt ttaccagcaa catcacctat aatatagcct tcagaacgct
     8701 cagaatcatc ttgagcgtag tcgataattg caatcggtgc atttagaaat tcagcgatat
     8761 tacgcgcgcg tttgatacca gaatttttag gactcacaat gacgacatct tcaccgcaga
     8821 gtcctttttc catgtagtag gctgcaaaaa gtggttctgt aaggagattg tctactggaa
     8881 tatcaaagaa accttgaatt tgtgaagcgt gcaagtcaag agtcaataca cggtcgacac
     8941 cagctttaac cagcatattt gcaactaatt tagctgtaat tggttcgcgt ggagaagcgg
     9001 tacggtcttg acgagcacag ccgaaataag ggatgacagc tgtaatggtg ttggcactag
     9061 cacgtttaca agcatcgatc ataatcaata attcccacaa gtgattattg accggatagc
     9121 ttgttgattg gataatgtag acgtctacgc cacgtacaga ttcttcaatg ttaatttgaa
     9181 tctcaccatc agaaaactga cgagaagaca gctttccaag agggattcca gcagaatcag
     9241 caattttttc agcaatatca cggttgctat tgagtgagaa taatttaatg ttatgttcac
     9301 cgagtggttg taccatttta aagtaactcc ttttacacac tgagctttta tgatgacata
     9361 aaagtatttt ttacgataga tagttctatt ctatcaaaaa aatgaaaaat tttcagtagt
     9421 gaaactaaaa aatcaacctt agttggctga ttttttatag ttatttcatg tgggcagcag
     9481 ttcgtgcgac cttactacta gcatatttga attgaattga tttcttctta aggaattcat
     9541 caaaaagaat tttccctgca tctgcatcgg tcacttcgac ttctaattcg taatcttttt
     9601 gtcccacata atcattttca tcgagggcca taaggcctat agatgtctgt ttctcatagc
     9661 gttttgtcgt gaggattccc cagacagcaa gtttatcaag tggaatttcg gttgcagaaa
     9721 taatatcaga aatttgtcct gctggtagtt gaaaattttc cagtaaatca tgagcagttt
     9781 ggatgtctag aacttggtta tattcttgat tgccgacttc ttgtggaatt tttaaggtta
     9841 gttctgctga gtcctcaaat gtacgaatac ggagtgaaaa gcggtgattc ttcatatcta
     9901 ggtctggggt atcaatgtag tggtttgttt gaagaattgg gctcacatct gaaaagtcag
     9961 taagcaggcg tttgtattcg gatttggtca gtaaggtttt atactcaatt tcaaggtggt
    10021 ttttcatgca gtaaaccctt tcaatgtgtt ataatagatt agtctttgtg ttattctaat
    10081 acaatttaaa agttttgaca agaaaggggc cgtatggact ttaactggga agaattttta
    10141 gacccctata ttcagacagt tggtgaattg aaaatcaaac tgcgggggat tcgcaagcag
    10201 tatcgcaagg ctaatcggca ttctccaatt gagtttgtca caggacgggt aaaaccgatt
    10261 gaatccatta aagaaaaaat ggctctgcga catattaaat tggaaaatct tgctcaagat
    10321 atgcaagata ttgccggtct tcggattatg gttcaatttg tggacgacat tgaagaagta
    10381 ttagctattt tgcggaaacg caaggatatg caaattgtgc atgaacggga ttatatcaat
    10441 aatatgaaag cctctggcta ccgttcatat catgtggtga ttgagtatcc tgtggatact
    10501 ataaatggca acgagacggt tctggcagaa atccagattc gaaccctttc catgaatttc
    10561 tgggctacaa ttgaacattc tctgaattat aaatataagg gaaattttcc agaagaaatc
    10621 aagaaacgct tggaagttac agcaaaaatt gcctatgaat tagatgagga gatgcgaaaa
    10681 atccgcaacg acattcaaga agcgcaggcc ttatttgatc ctgcctatcg caaactgaat
    10741 gacggtgtgg gcaacagtga tgatacagat gaagaataca ggtagaaaaa aaatcgctct
    10801 gctcgctagt cgaaatccta agagtgaagc ggtgtccaaa gaattatgga caaagttaaa
    10861 agaagcaaat tttattttga ctcctaaaaa tccagatatt gtcatttcta tcggtggaga
    10921 tgggatgctt ttatctgctt ttcacaaata tgaaaagttg attgatcgtg tacgttttgt
    10981 aggaattcac acgggtcatt tggggtttta tacagattat cgcgattttg aagtggacaa
    11041 gctgattgaa aatcttaagc ttgatacagg tgctagagta tcgtatccga ttttaaatgt
    11101 taaggtcaag atgacagatg gtcgcattgt cgaggcgcgt gccttaaatg aggcgacagt
    11161 aaaacgtctt tctaagacca tggtcgcaga tattattatt aacaatgtgc ccttcgaacg
    11221 cttcagaggg gatggaattt cggtttcaac gccgacaggc tcaacagcct ataacaagtc
    11281 attaggtggt gctgttttac atccaacaat cgaggcattg cagattgcag aagtggcaag
    11341 tttgaacaat cgtgtttacc gcaccttggg ttcatccgtt gttgtcccta aaaaagacaa
    11401 gattgtgatt gaaccaaagc atagtgaccg ttactcgatt gcggtagaca ataagacttt
    11461 tgtctatgat agtattgaaa gtatagagta tcagatagac aatagtaaga ttcattttgt
    11521 tgcaacaccg agtcatacta gtttttggaa tcgggttaag gacgccttta ttggagaggt
    11581 ggagtaatgc ggtttgaatt cattgctgac cagcatacga aaataaagac tttccttaaa
    11641 aaacatggtg tctctaaagg actattagcg aagattaagt ataccggtgg caatatctgg
    11701 gtcaacgata ttgagcaaaa tgcaacttac ttgcttgata ttggagatag ggttacaatt
    11761 gacatacctg ctgaagagga tttgactggt agtttgaagc cgattttctt tccgttggat
    11821 attgtctatg aagatgatca ttttctgtcg ataaataagc cggttggcta cgcctccatt
    11881 ccttctgcct tgcattcatc cacaatcgca aattttgtaa aaggttatct tattgagcag
    11941 aattatgaga ataagcaggt tcatattgtg actcgtctgg atagggatac atcaggcgtc
    12001 atgctgtttg ccaagcacgg ctatgcccat gcacgactcg ataagcagtt acaggccaag
    12061 cttattcata aacgttatta tgctttggtg aaggggaatg ggcagctaga agagacaggg
    12121 gatattattg cccctatcgg tcgtccagaa gatagcatca ttacccgttg tgtgacaaag
    12181 aatggaaaat atgcccatac ttcctatcgt gttgtgcaat cgtggggaga tattcattta
    12241 gtagatattc aactacatac tgggcggact catcagattc gtgttcattt ttctcacatt
    12301 ggatttccgt tgttaggaga tgatatgtat ggtggaagtt tggaatgtgg gatagaacgt
    12361 caagccttac attgtcataa tttggccttc gacaatcctt tttcagccga aaggattgat
    12421 ttggaagcac cgcttcctga ggattttcag gctgttatca atcagttaat aagtaaataa
    12481 atttaaggag tttgttcatg aaaatttttg agcaattagc tacaaagcta gagggtaaaa
    12541 aagtacgtat cgtattgcca gaaggtgaag aaccacgtat cttgcaggcg acaaaacgtt
    12601 tggtaaatga gtcggatgta gtacccgtct tgcttggaaa cccagatcgt attaagattt
    12661 accttgacat tgaagggatt acagaaggtt ttgaaattat tgacccagct cattatgata
    12721 gatatgatga gatggtagct gctttggtag agcgccgtaa aggtaaggta tcagaagagc
    12781 aggcacatga gttgttgaaa gatgttaact actttggtgt tatgttggta tatatgggcg
    12841 tagtagaagg tatggtatct ggtgcgattc attcaaccgc ttcaacagtt cgtccagctc
    12901 ttcaaatcat taaaacagag ccaggtgtat cgaaaacatc aggtgccttc ttgatggtaa
    12961 aaggtgaaga gcgttatatt tttggtgact gtgctatcaa cattgatcca gatgctcaaa
    13021 ccttggcaga aatcgctatc aactcagcac gtactgctaa aatgtttggt attgatccca
    13081 aagtagcgat gctcagctat tctacaaaag gctctggtgc tggtcctaaa gtagataagg
    13141 ttgttgaagc tacaaaaatt gctcaaaaat tgcgtcctga gttggatttg gacggtgaat
    13201 tgcaatttga tgctgccttt gttcctacca caggtaaatt aaaagcccca ggttcgagtg
    13261 ttgctggtca agcgactgta tttatcttcc caggtatctc agctggtaat attggttata
    13321 aaattgccga acgtatgggt ggatttgcag cggtaggtcc tgttttacaa ggtttgaatc
    13381 agcctgtaaa cgacttgtct cgtggttgta accctgatga tgtttacaac ttgaccttga
    13441 ttactgcggt tcaggctttg gagcaccgtt aatatgaaat ttttatcacg atattttaag
    13501 gactatatta aggaatccat attaggtcca gtttttaaac tattggaagc ttgttttgag
    13561 cttttggtac cattaattat cgcctatatc gttgatacaa ttattccaaa tggcagccag
    13621 ggaaacctgg ttgctatgct ttttttactg gttggtctag catgtattgg aattattgtt
    13681 tcactaatag cgcaatatta ttcagctaaa gcagcggttg gagtgactaa agagctgaca
    13741 aatgacttgt atcagaaggt tctttccctt cccaagtcta gccgagatat tctttcctca
    13801 tccagcttgc tgacacgatt gaccagcgac actttacaaa ttcaaacagg tattaatact
    13861 tttcttcgtt tgtttttacg tgctccaatt gtcgtatttg gttcgctcat catggcattc
    13921 tatattagcc caagtctatc tgcctatttt ctagaaatga ttatcctatt gatttttata
    13981 gtgacagtca tttctgttat gaccagccgt atttatcaat cgatgcgaaa agaattagat
    14041 ggtttggtgg ggcaggtacg tgagacagtg actggttggc gagtgattcg tgcatttgga
    14101 caaagagagc gggaaattaa ggcttttcaa ggcataaatc agatttataa gaagcaacag
    14161 ttgcaggctg gtttttggtc tagtctttta tcgccattga catttttagt ggtcaacggc
    14221 accttgctca ttctcatctg gcagggaaat atagccattt cacacaattt gttggaacaa
    14281 gggatgttgg tcgctctcat caactacctt ttacaaattt tagtagaatt agtcaagatg
    14341 attatggtcg tgtctactct caaccagacc tatatttcag cgcaacgtat tcaagaggtt
    14401 tttgaccaaa catctgagga tgtagagtct agtttgccaa aagtggttag tgaggataag
    14461 gaaatcatct tttctgtgcg tcatatttcc ttttcttatc caaaatctgc tgaggagtcc
    14521 ctgtctgaca ttgcttttga cttgcgtaag ggacagttta tgggaattat cgggggaact
    14581 gggtcaggta agtccaccct agtagattta ttgcaggcac tctattcagt gccaacaaat
    14641 cagctctctc tcttcattga tggaaaaagt cctaagaatt taaaagaatg gcggcagcaa
    14701 attgccattg ttccgcaaca ggctcagctt tttgctggga ctgtgcgttc taacctgtca
    14761 ttaggcttag aaagtgtatt ggacagtgag ttatgggcag cgctagaaat cgcacaggct
    14821 aagtccttca ttgaggacaa aggaggcttg gatagtcctg tcgaagcctt tgggaagaac
    14881 ttttctggtg gacagcgtca acgtttgacc attgcacgcg ctattttaca gaaagcaccg
    14941 atattggttt tagatgacgc gacctctgct ttggattatc tgacagagag tcggttattg
    15001 gccgcgattc gtcgtgcatt tcctgctcaa accttaataa tggtatctca gagaaccaat
    15061 agtttacgaa cagctgatca gattttggtc tttgatcaag gccgtcaagt gggacttggc
    15121 cgtcatgaag acttgctgag aagctctgcc atttaccaag aaatcgatca atcacaacat
    15181 agggaggagg acagccatga aacaatctag ttttaaggaa ctggtcagat tggttttagg
    15241 ccaacccttt caaatgtact tgatgttggt gggaacttta gtgcaggtgc ttctgacagt
    15301 ttatctgcct atcttgattg gtcaggcagt tgatgcagta ttgatagcgg atggtcaggt
    15361 cttgctaggg ataattggca aaatggtgat ggttatcctg cttaatacgc tggtgcaatg
    15421 gtatctcccg ctagtaacca atcgcttggt ttatggaatg gtggctgact tgcgtgaaca
    15481 ggtttatgtt aagctgcacc agatgcccct atcttatctt gatcgtcatt cagttggtga
    15541 tttagtagct cgtttttcaa gtgatagtga gcaattaacc aacggactct taatggtttt
    15601 caatcaattt ttcataggta tcttgaccat tttcctaacc attttcacta tggctaggct
    15661 tgacttgacg atgatgttgc tggttgtggc attgactcca gtttctctgc ttgttgcacg
    15721 ctatatcgct aagaaatcct atggttatta tagaaaacaa acacaggcac gtgggaagca
    15781 atctcagcta cttgaggaat cgatcagtca attgaccttg gttcaatctt tcaatgccca
    15841 agagcaattt acgcaaggtt ttcaagttgt gaatgaccag tatgcgacct attcccaaca
    15901 ggctatcttt gcctcttcaa cggtcaatcc aagcacgcgg tttatcaatg ctattattta
    15961 tgccttactt gcaggacttg gagcgctgag aattatggca gggcagttta cagtgggttc
    16021 actgacaact tttctcaatt atgctagtca gtacagcaag ccctttaatg atatttcctc
    16081 ggtcctatcg gaattgcaga gcgccttagc ttgtgcagac aggctgtttg ctatcttggc
    16141 tttagatagc attgacgatc aggctgagcg gaaaattgat tcagaggagt tgaagggagc
    16201 tatttccttt gacaatgtgt ctttctcata tagccctgaa cgttctctga tagaacattt
    16261 ggacattgat gtcgaagctg gacaaaaggt agccattgtt ggacctactg gtgccggtaa
    16321 atcaaccatg attaacctgc ttatgcgctt ctacgatgtg acggctggtc agattgtttt
    16381 agatggggtt ccgattagac agtacagtcg tgaggatctt cgcagacaga ttgggatggt
    16441 tttacaggag acatggatca aatctggtac cattcatgat aatattgcct atggctatcc
    16501 aaatgccacg cgggaattgg tcattgaggc ggctaaggca gctaatgcag acttctttat
    16561 tcgtcagctt ccgcaagggt atgatacagt tttggcagat ggaggagaag gcttatccca
    16621 agggcaacgt cagctcttgt ctattgcgcg tgtctttgtc aagataccta aaatcctgat
    16681 tttagatgag gcgacttcct ctattgatac acggacagaa attttagtac aagaagcatt
    16741 tgccaaattg atggaaggac ggaccagctt tattattgct catcgcctat caaccattca
    16801 atcagctgac ttgattttgg tcatggtgga tggaaaaatt gttgaacaag ggaatcatga
    16861 agcgttgatg gctgaacaag gcgtttatta tcaaatgcaa acaagtcagc agacagagga
    16921 ggatgaaagt gttagataaa ttaaacttac aaccgattac ggttttagat gactatcaag
    16981 ctacaatgct caatgagaaa gaggtgctac tgaccacaaa ggtgacggaa aaatctctca
    17041 atccatatgg tatggctcat ggaggcttcc tctttacttt agcagattca gtagcaggat
    17101 tgacaacagt ggttgggggt tcttattctg tcaccctgca gtccaatatc cattatatga
    17161 aggcggcaaa acttggtgat accttatccg tcactggttc ttgcacacat gatggaagta
    17221 gaacaaaggt cgttgaagtg aagataaaaa atcaagataa acagctactt gcttcagcaa
    17281 gctttaccat gtttgtaaca ggaaaagtag aataaaactc ttcgaacatc aaaagcagac
    17341 agtcttggct agattgagag aaaaaaactt cgttcgctct atttccaacc tcccaagttt
    17401 ccccaaacct ttgtagaaat gaacttcgtt cgctcaattt ccaacctcca aaggttcccc
    17461 aaacctttgg agctagtttg attttgatta taaacgatat aagggagttg gcaaaagctg
    17521 gctccctttc tttgtgttat actagatgta tgttagattt gaaagaatat ggaatcgaaa
    17581 tgtggccgga ggaaaagatt caagcttttc gcaaggcact cttagattgg tatgatgcca
    17641 ataaacgtga cttgccttgg agacggacca aggatccgta tgctatatgg gtttctgaaa
    17701 tcatgcttca acagacaaga gtagacacgg tcattcctta ttatgaacgt tttctccatt
    17761 acttgcctac gattagtgat ttagcacaag caccagagga ggtcattctc aaactctggg
    17821 aaggattggg ctattattcg cgcgtgcgga atatgcaaaa ggcagctcag caaatggtag
    17881 aagattttga tgggcaattt ccgactacgc atgcagccat ttcaagccta aagggcattg
    17941 gtccctatac tgctggagca atttccagta ttgcttttaa tttgccagaa ccagcggtag
    18001 atggcaatgt gatgcgggtt ctcagccgct tgtttgaggt tgattatgac attggtcttc
    18061 ctgccaatcg taagattttc caagcgatga tggagctatt gattgatcca gagcgaccgg
    18121 gcgatttcaa ccaagcccta atggatctag ggtcggatat tgaatcgcca gttaatccac
    18181 gtccacagga cagcccagtc aaagccttta gcgcagccta cttaaacggt acaatggata
    18241 agtatccaat caaagcacca aagaaaaagc cgattcccgt ggcctaccag ggatttctca
    18301 tcaggaataa agacaatcaa tttttattgg aaaaaaataa tgaagcaggt cttctatcag
    18361 gtttctggtc ttttccgctt ttggaaaaag gagcaatcgt tgaaaaacaa gtctctctct
    18421 ttgaagttgc agaagaagtt gttcagccag atattcggca gagctttacg gaactttatg
    18481 gtctgactgt tgattggcaa gagcaagaat ttggcatcgt ccagcacatt tttagtcacc
    18541 gcaaatggca gatagaaatg gtagaaggtg tggcagaaac acttaacctt ccagaatcaa
    18601 aagaattgaa atgggtttct gtagaagatt ttcctaccta cccatttgct aagccgcaac
    18661 aaaaaatgtg ggaaaacttt atcaaggaaa aagaaaagca aaaaagttga ctttggagca
    18721 cataattatt tgaaagcgtt ttacaatagt ggtataatct aattgaaaaa aggaaatagt
    18781 tagttaagat gttgaacgcc atctgaattg ctgaaaggag ttctttagcg ttcgtagaag
    18841 tgtatatact attagccatc tttctctaat aaaaagagag ggatgctagt aggggaaaag
    18901 tccgttatcc ctgttttata tctatttgtg atatccattg tcaaatgcat agcattaact
    18961 cattatttag ccttgctacc cggttcaatc agaagtaggc taagattatt cgtgtcgtaa
    19021 ctactatgtg ttcaagatgt tgtaactttt gaacataacc ttagaaaatc acaaaaacct
    19081 ctagcgattt tcatcataat aagcaatctc cacactttag acaaatagta agaggacaat
    19141 caaagacata agggtagcag aataattatt taatcattaa cttgttgtca aataactatc
    19201 tggtaatgga cttttccaat ttgacatata aaagggaggc tgtcatagcc tccttttact
    19261 gtgcttttca gtttgttttc agtaggaaaa aacgccagct atacgaacag actttccaaa
    19321 actagatgga tgaatgtagc caatataact agtgattaac taggcttaga aatcaatctg
    19381 gactataaat atctacaact tgaccaatag gtcgaatatc gtcttctggg ctaaaataga
    19441 tatcatcata gtcagaattg agtgattgca aatagtcacc tttgaacttt ttaacaaaat
    19501 tttccccatt gactgaaaaa attccaatcg tatttagagg aatatgagga gttaggcgaa
    19561 tgaagagata gtctccatcc tcgatatgcg gagccataga atctcccaca acctgagcga
    19621 ttgtatcata agattggtta tctggaatct catcgttata gaatgataca agattgttca
    19681 tatctgtatc ctgccagtaa cctgtaccgg cagaaacctt accaggaaca ggtaaatcga
    19741 ttcgctctcg atagtcatcc aagtgaagaa tagaagcaga aggagtaatt gaggtagttt
    19801 gcatagctgc taactgttct tgaccaaaag ttaaccattg tgcatggaaa tcacctttta
    19861 attcattgtc caaggtttga acctctggat gaataggctg ttgaaagagt ttaaactggg
    19921 aaggagtaat cgttaaagca atatcctgat tagaatctag ttgctcgatt agctcaccaa
    19981 ccgatatagc catgccctta gcgacttttt ctagcgtatc catcgttggc aggagagctt
    20041 ttttggtttt gggatgctgg ttcttttcca acatagaaat ataacctttt gttaaaccag
    20101 ataattcagc gaatttatcc attgataatt tattcttgct tcggtattct tttaaaatat
    20161 cacctaaaat catggttgtc tccttatctg tttaaccaat tataccatta aaaaatattt
    20221 tttgcaaatt ttgtttaaca cgtttgacaa aaaatcaaaa cggtgttatg ataatctcac
    20281 aaaaaagaaa aataggagtc gcaaatgaaa aggatgacag agatttcttg gaatgatatt
    20341 tataaagagt gggaaaccta tgctaatcat tttggtttga cgactccgat aaatactgaa
    20401 aatttgcgag atcagaaatc gaaggatttt ggaaaaggaa gtctgattac gctggactta
    20461 ttagccgatt acgatactga ttctgagaag accgcagcta tttgggtagc ttcattttgt
    20521 agagatttaa tacaagatta cgcatattta ctaaatggta gagcctatct tacagtcaat
    20581 cagatttatt ttcaggcact caaacaattt cagtcaggag cggtaatatg gtcaaaacct
    20641 atcacacgat tgcaaccgaa gttatttgta tcttatcgtt tgttggaaaa tcttgatttg
    20701 agtcattatt cttgtgtagt tgagttagca atgttgcagg ctagtatggt tcggacacag
    20761 atattagaaa agtaattata gtaggagaat gaaaatgttt aatttgttga ataagaaagc
    20821 tgaagtatcg aaagttgcag agtattggaa tgatactttg atagaaaggg gaattttgag
    20881 cgctgatgaa ttgcttgaag gaaaatgctg gagatgtaaa agttctcatg gtgtagctgt
    20941 gtgtcagatt gtatcaagca aatggagcaa ggatgcgagc ctggctaatc agatggtcct
    21001 ctgtctatcc tgccagcatg aaaaacctaa tgtagctgat acagaaattg tgtggcaatg
    21061 gttagaagtt gagaatgatg aacgttactg gactctacaa ggtatggcag aatatgagaa
    21121 aatgtataaa aaatcagtac ttcaagagtt atgggatatg ggaattagag atggtgaaga
    21181 agtcgagacg cttgtaaata aagtaactag cctttctcgt aagaatgata ttgttttaaa
    21241 tagagcaacc ttagcaggat tatttcgctg tgaaattgaa caaatgcgtc gaaaggcatt
    21301 tctaaattgg acaggaattt ttaagctagt cagttaactg atgcagttgt aggaaaacat
    21361 ctcatgctga ttggagtaac agataaataa aaagcgcatc agcttagaat cttaaagaaa
    21421 gaagtctaat gatgcgttta taggattata tttcagctaa taaaaattgg agtgaatgtt
    21481 tttgaattat agctcaaaaa cgttagtcaa aaccttatta taccaacgat tatggcgctt
    21541 ttttggtgcc agttggtgtt aattataatg ataagtcgtt taagagactt aaagcatcgg
    21601 catcttgctg gtgctttttt tctggcatca attctagata atactgttgt gttgttaaga
    21661 tagagttatg acctagatga cgagaaatat agtctaggct aatatctttt gaaaagagaa
    21721 atgaggcatg cgtgtcacga agtccatgaa atgtcgtttt tgttaatccc aactgtttta
    21781 acagcttttg aagttgacta gcttgcttga atccattcca atcaaagata tagccttctt
    21841 ttgtttgtgc aagttttgtc acagcttgat aaacatcttc gttgatggaa atatcacgct
    21901 tagaatattt ggttttaagc cgggtatcgt cattagttgg actaattgat cgaagaattt
    21961 tgataccata ttcaaaaata tcttcttttt taattcctaa aagttctccg cgccttgcta
    22021 ctgtctcaag ggcgagagca acaagaacat taaattcatt ctcagtatga cttaggcagt
    22081 attgtctgag ttttttaaat tctgtgatag atttaggttg ttcttgtcct tttgatttca
    22141 aaagatgacc aaagtcatta ctaatcaaac cacgagcata cgcatatttt aatgaaccac
    22201 ggattttaag aacaagttct tttactgttt ttttagagtg ggtttcagcg tattggtcga
    22261 ttttcttttg catgacgaga tcgtcaaggt gtttaagttg aataccatca aaaaggtcat
    22321 caactattac aagagttcgt ttatagttaa taaaggtggc ttcgcgaacg tcagttttct
    22381 tgaccgtatg gacccaattt ctataaaaat caggaaataa ggtagatcgt tcggcaatgt
    22441 tcttgccacg acctttttca agttccattt ctaatgtcca aagctcagca tcttttctgt
    22501 tgctaaaggt tttagtttct cgtttatatt ctcctttctt ataaagtgat acagttgcac
    22561 ggtaagagtt accacgtttt gttattgttg ccattttatc agcctttcta taaaaaatga
    22621 ttgataaaat agactagtca catataggga tatatgaaaa atctaatttt atcaatcatt
    22681 atccgtcaat cgcagtggct ttcaataaat ttaaccagtt ttgacttcaa atagcgctct
    22741 tgttttccca ccataaagca ttgaaagtct gggtgacttc tgatgtactt atcaaatgat
    22801 ttaggatcta ttccaagtag ttccgctgct tgttgtctat ttaacagaag aggagaatta
    22861 ttttgaggta acatatagaa ttcctttcat tttctagata caagtattat gccacatgcg
    22921 taatgaattg aggctagatt tttgaaaatt gttcaatgtt acctaacgtt tcaataaaat
    22981 ataagcgtag gaacgaggaa attcctctgg tctattgtgt cccagagtct ttatcacaat
    23041 tttacaagct tttctgttga gtgagatgcc aactaactct ttacgcagat ggataacttc
    23101 tttacgattt ctaatcttgg agatttcgcg tgctacactg cgataaacac gctctgcata
    23161 ctctgtagga tatttgtgtg actttaatgc tgttggaact ttctttccat caaaatcgtc
    23221 gaggattaaa tctttgggaa catgaaagac tttcttttct cctgctcgtt ggaaaatagc
    23281 gactaaccac tcttcctcct cttgactagt ggccatgatt ggagaccagc gatctctgcg
    23341 tccttttgtg tgatgcttat ggccggctaa atttaaatac caacggccat cacggccgcg
    23401 ttgcagagca tcgccagtga cgtggattaa ttcacttttg cgtaagcctg tcgaggtaac
    23461 tactttatgc cagtagtcgt tatttttgtt ggataaacga tagtctttat gtaatacacg
    23521 attgttcata cgattcgcac gagtacgtgg ttgtgtagcg atgaaattag ttgaggaaac
    23581 tccgagaact ttggtcaatg ctactttgta ggtagcttgt gtatatggac ttaaaccaat
    23641 ctctatacaa tattgtaagt attgattgat aagttctatc caaccttccg tatctttttc
    23701 aacattacct aatgccatta actgttctgg cgaaatgtta attgaaaccc attttgcaaa
    23761 acaatgccat gaacctgaat agttatggag tgtacgatga gtgtggatta actcaatgct
    23821 ttcttttttc cttgcagtcg gttctaacga accgatgttt tgcgaaccgc gcaaaacctg
    23881 cttgcgaaga ttgctcgcat aataaagttg taattatcat ttaaaataat gttcaaaatt
    23941 ccaacacatt cttgtttatt tttgatataa tgtaaaaaaa caacaaagga ttaaacatga
    24001 ataaacgaga acgactagaa gaaattacac gattggtaaa caaaaaaggc acagtccgaa
    24061 tttctgagat tgttgaattg ctaaatgtta ctgatatgac tgttcgacgt gattttattg
    24121 aactggaaga gcaaggtgtc ttaacaaaaa ttcacggcgg tgctagaagt aataaggctt
    24181 ttcaatatcg ggaatactcc cattctgaga aacacattca gaataaggaa gccaagcaag
    24241 agatagcgga aagggctgca caactgatag aagatggaga cacggtattt ttaggtccag
    24301 gaacaacagt ggcctttttg gctgaggcca ttaaaaattc tcgcctaaca gtcatcacaa
    24361 actgtatgcc tgtttttacc atcctatctc aaaagaagac agaggagttt caagtctttc
    24421 ttctgggggg agaatatcgt caagtgacag aatcttttgt aggagaaatt accaatacaa
    24481 gtttagaaaa aatgcgattc agcaagattt tcttttcagg taacggactt aagggaactg
    24541 atgtcatgac ctctacccta gcggaagcct atacgcaaaa tattgccatt aaacattctt
    24601 tagaaaaata tctactgcta gatgcctcga aaattggaaa agatgatttt acttcctttt
    24661 gtgatttgca tgatgtaact gctctagtga ccgatatgaa tgcaaaggat gaaaattacc
    24721 aattattaag taagcacatc gaaat
//
LOCUS       DASGBY010000016        23169 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.016, whole genome shotgun sequence.
ACCESSION   DASGBY010000016 DASGBY010000000
VERSION     DASGBY010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 23169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23169
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.016"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            77..736
                     /locus_tag="U1396_000507"
     CDS             77..736
                     /locus_tag="U1396_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEM5341721.1"
                     /translation="MTPNKEDYLKCIYELGQLDQKITNKLIAEKMAFSAPAVSEMLKK
                     MVAEELISKDAKAGYLLSQTALEMVASLYRKHRLIEVFLVEQLGYSPEEVHEEAEILE
                     HTVSDHFINRLDLLLEQPQTCPHGGSIPQAGQPLIERYQTRLSQLTETGNYQLVRIHD
                     FYQLLQYLEQHELAVGDLLTVTAFDQFAQTITIQYKDKELAVPTAIAQQLFIEKSNRP
                     A"
     gene            complement(1152..1337)
                     /locus_tag="U1396_000508"
     CDS             complement(1152..1337)
                     /locus_tag="U1396_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341722.1"
                     /translation="MKKLLTNHFFYLTIAFLLILVIYFSGIDKRWIILASFLYFIPSQ
                     ILYRRRLRERLQEDQPE"
     gene            complement(1413..1856)
                     /locus_tag="U1396_000509"
     CDS             complement(1413..1856)
                     /locus_tag="U1396_000509"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEM5341723.1"
                     /translation="MKIVLQRVSQASVTIEGSIHGQIEQGLLLLVGVGPDDTQEDLDY
                     AVRKIVNMRIFSDEAGKMNKSVQDVAGKILSISQFTLFSDTQKGNRPAFTGAAAPALA
                     SQLYDAFNQALSAFVPVEVGVFGADMAVSLVNDGPVTIVLDTKNK"
     gene            complement(1858..4059)
                     /locus_tag="U1396_000510"
     CDS             complement(1858..4059)
                     /locus_tag="U1396_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM5341724.1"
                     /translation="MKEINFTGEEVVGLTATYLPAEDVAFVQKALDFATEAHKLQFRK
                     SGEPYIVHPIQVAGILAGLKLDAVTVACGFLHDVVEDTDVTLDDMEAEFGPEVRHIVG
                     GVTKLGKVEYKSHEEQLAENHRNMLIAMSQDMRVILVKLADRLHNMRTLKHLRKDKQE
                     RISRETMEIYAPLAHRLGISSIKWELEDMSFRYLNEVEFYKITRMMNEKRREREELVN
                     EVVDKLRDYTEERHLHGQIYGRPKHIYSIYRKMHDKKKRFDQLYDLIAIRCIMDTPSD
                     VYAMLGYIHELWKPMPGRFKDYIANQKANGYQSIHTTVYGPRGPIEFQIRTMEMHQVA
                     EYGVAAHWAYKRGGKATASEKELRWINNLIELQEGAGDAQTFVNSVKDDIFTERIYVF
                     TPDGAVRELPKDSVPIDFAYEIHTKVGERATGAKVNGRMVPLTTKLKTGDQVEIITSA
                     NSFGPSRDWVNLVKTHKARNKIKQFFKNQDKELSVSKGREMLQNLLQENGYVPNQYLD
                     RRHMDEVLQKTSYKTDESLFAAVGFGEVSAISIFNRLTEKERREAERAKAKAVADELV
                     NGGEVKHDNKDSLKIRHEGGVVIEGASGLLIRIAKCCNPVPGDEIVGYITKGRGVAVH
                     RVDCMNLKSQENYDVRLIDVDWEDENSTKEYMANIDIYGLNRSGLLNDVLKVLTNASK
                     NISSVNAQPTKDMKFATIHVSFGISNLATLTSLVDKIKSVPEVYSVKRTNG"
     gene            4323..6812
                     /locus_tag="U1396_000511"
     CDS             4323..6812
                     /locus_tag="U1396_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase/3'-nucleotidase"
                     /protein_id="HEM5341725.1"
                     /translation="MKFRFSKCALTLSLALLASTNNALVSAEETSTDTPVLKTETEIS
                     SSVATSQAEATTGEVATPTTTETTAGEAVTPTTETTDQSVTPVTEEAAPVVETSNTPV
                     NDTTASPVTATRAAATETTTPVEGQSVDVRILATTDLHTNLVNYDYYQDKPVETLGLA
                     KTAVLIEEAKKENPNVVLVDNGDTIQGTPLGNYKSIVDPIEEGEQHPMYAALETLGFD
                     VGTLGNHEFNYGLAYLEKVIRTANMPLVNANVLDPTTKDFLYTPYTIVKKTFTDTEGK
                     KVTLNVGVTGIVPPQILNWDKAYLEGKVIVRDAVEAVRDIIPTMRENGADIVLVLSHS
                     GIGDDQYEVGEENVGYQIASLSGVDAVITGHSHAEFPGTAEKPSFYAKYSGVDDTNGK
                     INGTPVTMAGKYGDHLGVIDLNLVFKDGKWTTTSSKAAIRKIDTKSSVADGRIIDLAK
                     EAHNETINYVRQQVGETTAPINSFFALVQDDPSVQIVNNAQIWYAKQQLAGTSEANLP
                     ILSAAAPFKAGTRGDASAYTDIPAGPIAIKNVADLYLYDNVVAILKVNGAQLKEWLEM
                     SAGQFNQVDPSSTEPQNLVNTDFRTYNFDVIDGVTYQYDITQPNKYDRNGKVVNETAS
                     RVRNLQYNGQDVTADQEFIVVTNNYRANGTFPGVREASVNYLLNLENRQAIINYIIAE
                     KVINPTADNNWTFTDSIKGLDLRFLTADRAKELVANQEGLVYLQASAENEGFGEFKFV
                     YTEPKVATPDEQQSDQGNTGQDIVLESGQRITLPAVNPPAPAPQHKLASPHSQASTKT
                     LPATGEATSMLSLLGLTLIGFVGAWTKKKEH"
     gene            complement(6933..7490)
                     /locus_tag="U1396_000512"
     CDS             complement(6933..7490)
                     /locus_tag="U1396_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341726.1"
                     /translation="MKRLSTPIFAALGFFLIVFVALNQFGRVPGTSYQIISELVLYNQ
                     ATEQTYEFENHEVRKAFIRQLSSTSSRGFQASDSRTSLETTYHETIMSENLISSIYGG
                     EEGRIMEFSRPRKSTLGNLVFASESVSYLVFARKYGNIRLETTILCQEFRVEQRLANQ
                     SNWVDLGTYTVKSPKETRYVPIYWE"
     gene            complement(7731..8446)
                     /locus_tag="U1396_000513"
                     /pseudo
     CDS             complement(7731..8446)
                     /locus_tag="U1396_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
     gene            complement(8456..9718)
                     /locus_tag="U1396_000514"
     CDS             complement(8456..9718)
                     /locus_tag="U1396_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341727.1"
                     /translation="MSELEQKEHRELIVSDDCFALIQKMSELDSSAYQRYEITNPNIL
                     AHVEKIVQPALKHHLKKAGQPNIPKGLFKVDLPIGDLHKIKGETDKYRAFVKGAEGKF
                     KAHAILTPAQVEIAKGAKAAAAVSGAMQVAAMVVGQYYMAEINGQLDSMKETLNDVKD
                     FQVREFKGTVRALIVNISQLSKFSADYVENAELARLKLMECANFRAEVTKLLEQVNLA
                     IEESITKGKGLSFEKYEQLIDKLSTNLFYQQTLLRLLAELSKLDLVFSQGVASEDSSY
                     YVYEYYLNNCNSLGEKIANWHKDKIKFFQIDTKRNRRTQEGPMKVVADIAKELDKNAH
                     VAAGVGFLGGLVGAAAGFGIGKAAGELNKAIRYIDVRKRTVKLISEQETVSYQSSKRL
                     SVNNYGENVKLLVEDGKVYYLLPDDSES"
     gene            complement(9732..10478)
                     /locus_tag="U1396_000515"
     CDS             complement(9732..10478)
                     /locus_tag="U1396_000515"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEM5341728.1"
                     /translation="MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDD
                     GIKRLARVVDSQNQSVEIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAA
                     LWAFPADWSVVKWDGKKLGKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLA
                     GFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAV
                     KTGLGPRILRAETAPLYALSAISYATELLR"
     gene            complement(10480..11433)
                     /locus_tag="U1396_000516"
     CDS             complement(10480..11433)
                     /locus_tag="U1396_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001099287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEM5341729.1"
                     /translation="MNSWQELTIHVHRDAEEAVSNLMIETGSQGVAISDSADYVGQED
                     RFGELYPEVEQSDMIVITAYYPDTVDIEEVKADLATRLADLTGFGLETGQVSLESQEL
                     AEEDWADNWKKYYEPARISHDLTIVPSWTDYEATAGEKIIRLDPGMAFGTGTHPTTKM
                     SLFALSQVLRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNA
                     NTSNIHVAAGDLLRGVDIKAEVIVANILADILIHLTEDAYRLVKDEGYLIMSGIIADK
                     WDMVRASAEAAGFFLETHMIQGEWNCCVFKKTADRSGVIGG"
     gene            complement(12029..12382)
                     /locus_tag="U1396_000517"
     CDS             complement(12029..12382)
                     /locus_tag="U1396_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM5341730.1"
                     /translation="MVHEMLLAPKPFEMMKSGQKTIELRLYDEKRKHIQIGDRIRFYC
                     TENQTQTIEVQVLDLHIFDNFAQLYKELDLLSCGYTQSSIRGAKPEDMEDYYSREQLE
                     QYGAVGIELRVIDSI"
     gene            complement(12384..12854)
                     /locus_tag="U1396_000518"
     CDS             complement(12384..12854)
                     /locus_tag="U1396_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3013 family protein"
                     /protein_id="HEM5341731.1"
                     /translation="MAKHGFLDVLEAALDKHFTYDYELNWDKKNHAVELAFILEAQNV
                     AGIETVDDEGNASSEDIFLEEYVLFYNQDKSRFDEEDYLVALPFDAKKGFSAEFLTYF
                     AGFLKDTADQGLDDLMDFLVDPEAQDFAISWDGEAFEKGRADLLEGEFYPYPRY"
     gene            12928..14214
                     /locus_tag="U1396_000519"
     CDS             12928..14214
                     /locus_tag="U1396_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEM5341732.1"
                     /translation="MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMIL
                     YGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRLQEIAEEAKFSGGLVLMLDEIHR
                     LNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
                     LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDL
                     DAVENSLQKSYISMDKNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLAR
                     RLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVIDLALSPKSNSAYL
                     AMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKL
                     LAADYFTANDTGKYERALGMTQEKIKNLKKNRRQNP"
     gene            14316..14509
                     /gene="ssrS"
                     /locus_tag="U1396_000520"
     ncRNA           14316..14509
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="U1396_000520"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            14518..14590
                     /locus_tag="U1396_000521"
     tRNA            14518..14590
                     /locus_tag="U1396_000521"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14551..14553,aa:Lys,seq:ctt)
     gene            complement(14695..15252)
                     /gene="nrdG"
                     /locus_tag="U1396_000522"
     CDS             complement(14695..15252)
                     /gene="nrdG"
                     /locus_tag="U1396_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HEM5341733.1"
                     /translation="MNNPKPQEWKSEELSQGRIMDYKAFNFVDGEGVRCSLYVSGCLF
                     HCEGCYNVATWSFKAGIPYTKELEDRILADLGQPYVQGLTLLGGEPFLNTGTVLPLVK
                     RIRKELPEKDIWSWTGYTWEEMMLETPDKLELLSYLDILVDGRYDRTKRNLMLQFRGS
                     SNQRIIDVQKSLQEKRVVLWDKLKK"
     gene            complement(15439..15933)
                     /locus_tag="U1396_000523"
     CDS             complement(15439..15933)
                     /locus_tag="U1396_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341734.1"
                     /translation="MELRRPTIADKETILEMLAEFEAAGSAMDGGFISKDVDFEEWIF
                     RNKDYEAGLNLPDGFVPSIQYVSFDQTGRALGFLSLRLRLNDFLLNKGGHIGYSIRPT
                     ERGKGYAKDQLRLGLQEAATKNISKVLVTCSTDNQASRRTIVACGGVLEDVRDGVERY
                     WIED"
     gene            complement(15935..17040)
                     /locus_tag="U1396_000524"
                     /pseudo
     CDS             complement(15935..17040)
                     /locus_tag="U1396_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939128.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphatase"
     gene            complement(17269..19440)
                     /gene="nrdD"
                     /locus_tag="U1396_000525"
     CDS             complement(17269..19440)
                     /gene="nrdD"
                     /locus_tag="U1396_000525"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEM5341735.1"
                     /translation="MNVQENVLPSIELLVLKRDGRTVSFDQDKIFSALRRANQELEHP
                     VSEAGLKIVLEAVLAEIGRRFEKDVQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRD
                     FRRHQATDINFEIHKLLSKDQSVVNENANKDADVFNTQRDLTAGIVGKSIGLKLLPAH
                     VANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLAQGFKIGNADVESPKSIQTATAQ
                     ISQIIANVASSQYGGCSADRIDEVLAPYAELNYQKHLKDAKDWVLPDKQEEYARAKTQ
                     KDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFEREIQKAILNIRIKGLGREG
                     RTAIFPKLIFTVKRGLNLEPDSPNYDIKQLAIECATKRMYPDMLSYDKIVELTGSFKV
                     PMGCRSFLQGWKDENGQDVTSGRMNLGVVTVNLPRIAMESAGDKDKFWEIFVERMAIA
                     KDALVYRVERVKEATPANAPILYQYGAFGKRLAKTDAVDEVFKNRRATVSLGYIGLYE
                     VATVFYGGEWETNPEAKDFTVDIIKKMKALVEDWSDEYGYHFSVYSTPSESLTDRFCR
                     MDTEKFGIVKDITDKEYYTNSFHYDVRKNPTPFEKLDFEKIYPAVGASGGFIHYCEYP
                     VLQQNPKALEAVWDYAYDRVGYLGTNTPIDHCYACDFEGDFEPTERGFKCPNCGNSDP
                     KSVDVVKRTCGYLGNPQARPMVKGRHKEISARVKHMNGSSL"
     gene            complement(19746..20489)
                     /locus_tag="U1396_000526"
     CDS             complement(19746..20489)
                     /locus_tag="U1396_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5341736.1"
                     /translation="MIKIRNLVKEFSGQKVLDGIDMDIEKGQVIALVGPSGAGKSTIL
                     RSLNYLEQADAGSIEIDGFTVDFTNISKEEILTLRRKLAMVFQQFNLFERKTALDNVK
                     EGLKIVKRMDDASATALAKEELRKVGLSERENHYPRHLSGGQKQRVALARALAMQPDI
                     LLLDEPTSALDPELVGEVERSIADAAKTGQTMILVSHDMNFIYQVADKVLFLENGRIL
                     EQGTPEELFHHPKEERTREFFASYSNPQF"
     gene            complement(20489..21292)
                     /locus_tag="U1396_000527"
     CDS             complement(20489..21292)
                     /locus_tag="U1396_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5341737.1"
                     /translation="MIGVLGITGPAWYQGFLEWLPDGKLFSIRAVFDALPSIIERLPI
                     TIGLTLAGAFFGLILGLVFAIVKINRVRFLYPVQAVFVSFLRGTPILVQLMLTYYGIP
                     LVLRGLNQEYGLDWNINAIPAAVFAITAFAFNEAAYMSESIRAAIQAVSPGEIEAARS
                     LGMTSGQVYRRIIIPNAAVIATPSLINTLIGLTKGTSLAFSAGIVEVYAQAQIQGGAD
                     YRYFERYISVSLVYWALSVLIESFGRFLENKMAIQAPESVDISGVGGDR"
     gene            complement(21478..22329)
                     /locus_tag="U1396_000528"
     CDS             complement(21478..22329)
                     /locus_tag="U1396_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5341738.1"
                     /translation="MKLRTILSLAGITALATVALAACSSTSNSSNTSSSEADKKETIV
                     MGTVGTTKPFSYRDENGELTGFDIELARAIFDGSDQYELTFETTDGSGQFPGLDSGRF
                     DLLGNNTSYTKERGEKYLYSYPTASTPSVLAVPKDTDIQSYDDIGGHSTQVVTGTTTA
                     AQLEEYNTQHTDKPVDINYTGENITQILTNINDGKYDFKIFDAPTVNAIIADQNLTNL
                     KTIELEAAEKPFIYYVFSSDNTALQSFVNDRIKALNEDGTIAKLTEQFFGKDYAPTAE
                     ELAVPNE"
     gene            complement(22362..23048)
                     /locus_tag="U1396_000529"
     CDS             complement(22362..23048)
                     /locus_tag="U1396_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5341739.1"
                     /translation="MGKPIIGITSNEKPVAEGIPIMNLSLSRNFADGIKRAGGLPFYI
                     PLSGETDVVDYVSAIDKLLLTGGQHVLPQFYGQEKLIESDDYFKERDEFELKLVHEAL
                     RQEKPILGICRGMQLFNVARGGTLKQAVEGHRSLPFDLIHQVECKEATPLASIFGQRV
                     AVNSIHSQAIENLGQGLEAIVHSVDDGIIEAVRSMDETRFLGVQWHPELLIDQSGGNQ
                     KLFDYFVQTL"
BASE COUNT         6611 a         5693 c         4426 g         6439 t
ORIGIN      
        1 ttaatctaaa aaaatcattt tgtcaactga tttttaaatt ttttgatata atagtttcag
       61 aagaaagcga gttctcatga caccaaacaa agaagattac ctaaaatgta tttatgaact
      121 aggtcaatta gaccaaaaaa ttaccaataa actcatcgca gagaagatgg ccttctccgc
      181 accagccgtt tccgaaatgc ttaaaaaaat ggtagccgaa gagctcattt ctaaggatgc
      241 caaggcaggt tatctcctca gccaaactgc ccttgaaatg gtagccagcc tctatcgcaa
      301 acaccgcttg attgaggtat tcttagttga gcaactcggc tactctccag aagaagtaca
      361 tgaagaagct gagattttag aacacaccgt ttcagatcac tttatcaatc gcctagacct
      421 gctactggaa cagcctcaaa cttgtcctca cgggggaagc attcctcaag caggacaacc
      481 gctcatcgaa cgctaccaga cacggctgtc acagctaact gagacaggga actaccagct
      541 tgtccgtatc catgacttct atcaactcct tcagtacttg gaacaacatg aattagctgt
      601 cggtgattta ctaaccgtca cagccttcga ccagtttgcc cagaccatca ccatccagta
      661 caaggacaaa gagctcgccg tcccaacagc catcgctcaa caattattca tcgaaaaaag
      721 caatcgccca gcctaaacaa gctgagcgat tttttcttct aaaataaata gttacctctt
      781 tttcaaatta cggaaaatag atctggctgc aaaaatagtt gcccacatac atacaccaac
      841 caaagtagga aacctatata aaaacagccc aatagaaaat gagggttata ggttaaaggc
      901 tgcaagacaa acatgagaat ccctaccaac ccccaccgca taccccaggt catctttctc
      961 tggataatcc actccagcca atcttctcca actgaacttc tggtttccag atactcttga
     1021 ttaaggtctt gaaaaaattt tctcatattt ctgcccacct catcctaact tcaaagcata
     1081 aactaccact ttatgacaat attatcatag cacattgttt tcaaataacc aatactgtcg
     1141 aaaaaaccag cctactcggg ctggtcttct tggagtcgct ctcttaggcg acgacggtat
     1201 aaaatctgcg atggaatgaa gtaaagaaaa cttgccaaaa taatccagcg tttgtcaatt
     1261 ccactaaagt aaatcactaa aatcaaaaga aaggcaatcg tcaaataaaa gaaatgattt
     1321 gtgagcaatt ttttcatagt agcctccata cctatttttc aatattagta tatcaaaata
     1381 cacaaataga gtacataccg ttgccaaaag ttttacttat ttttcgtatc caaaacaata
     1441 gtcaccggcc catcattgac caggctaacc gccatatccg ccccaaaaac gcccacttca
     1501 acaggcacaa aggccgacaa ggcctggtta aaagcatcat agagttggct ggctagggca
     1561 ggagctgcag ctcctgtaaa ggcagggcga ttaccttttt gggtgtccga aaagagggta
     1621 aattgggaaa tggataaaat cttgcccgcc acatcttgaa cggacttgtt catcttgcct
     1681 gcctcatctg aaaaaatccg catattgaca attttccgaa cagcatagtc caggtcttcc
     1741 tgtgtgtcat ctggccccac accgactagg agcaaaagcc cttgttcaat ttgcccatgg
     1801 atacttcctt cgatggtcac actggcctgt gatacacgtt gtagtacaat tttcatctta
     1861 tccgttggtc cttttcactg agtaaacttc tggcaccgac ttaatcttgt ccaccagact
     1921 ggtcaaggtt gccaggttgg aaataccaaa ggaaacgtgg atagtcgcaa acttcatatc
     1981 cttggttggc tgggcattga ccgaagaaat gttcttgctg gcattggtca aaaccttgag
     2041 aacatcattg agcagtcctg agcggttgag accgtaaatg tcaatgtttg ccatgtattc
     2101 cttggtcgaa ttctcatcct cccagtccac atcaatcaag cgaacatcgt agttttcttg
     2161 actctttagg ttcatacagt ctacacggtg aacagctacc ccacgcccct tggtgatgta
     2221 gccgacaatt tcatcgccag gtactggatt acaacatttg gcaatccgta tcagcaagcc
     2281 tgacgctcct tcaatgacca cgccaccttc gtgacggatt ttcagactat ctttgttgtc
     2341 gtgtttgact tcgccaccat tgaccaattc atccgcgaca gctttggcct tagcccgctc
     2401 agcttctcga cgttctttct ctgtcagacg gttaaagatt gatatggcag aaacttctcc
     2461 aaaaccaact gccgcaaaaa gggattcgtc ggtcttatag ctggtctttt gcaggacctc
     2521 atccatgtgg cgacggtcca ggtattggtt gggaacgtag ccattttctt ggagtaagtt
     2581 ctgaagcatc tcacgccctt ttgaaacaga caattccttg tcctgattct tgaagaactg
     2641 cttgatttta ttgcgagcct tgtgagtttt aaccaagttg acccagtcac gacttggacc
     2701 gaaagagttg gcagaggtga tgatttccac ctgatcgcct gtcttaagct tggtcgtcaa
     2761 aggcaccata cggccgttga ccttggcacc tgttgctcgc tcgccgacct tggtatgaat
     2821 ttcataggcg aaatcaatcg gtacagaatc ctttggcaac tcacgcacag caccatctgg
     2881 cgtgaaaacg taaatacgtt ctgtaaaaat atcgtccttg acagaattta caaaggtttg
     2941 cgcatcccca gccccttctt ggagttcaat caggttgtta atccagcgca actctttttc
     3001 gctggcagtt gccttgccac cacgcttgta agcccagtga gctgccaccc cgtattccgc
     3061 cacctgatgc atttccatgg tccgaatttg gaactcgatt ggacctctcg gtccgtaaac
     3121 cgtggtatga atagactggt agccgttagc tttttggttg gcaatgtagt ccttgaagcg
     3181 acctggcata ggtttccaca attcatgaat ataccctaac atagcataga catcgcttgg
     3241 agtatccatg atacaacgaa tggcaatcaa gtcatagagt tgatcaaacc gctttttctt
     3301 atcgtgcatt ttgcgataga tagagtaaat atgcttgggt ctaccgtaaa tctgaccatg
     3361 tagatggcgc tcttctgtat aatctcttag cttatcaaca acttcattga ccaactcttc
     3421 ccgttcacgg cgcttctcat tcatcatgcg cgtaatcttg tagaactcaa cttcattgag
     3481 atagcggaaa gacatgtctt ccaattccca cttgatagaa gaaataccta gacggtgggc
     3541 aagcggtgca tagatttcca ttgtttcacg tgaaatacgt tcctgcttgt ccttgcgcaa
     3601 gtgcttaaga gtccgcatgt tgtgaaggcg gtctgccagt ttaaccagaa tgacccgcat
     3661 gtcttgggac atggctatca gcatgttgcg gtggttttca gccaactgct cctcatgaga
     3721 cttatactca accttaccca gtttggtcac accgccgaca atatggcgaa cctctggacc
     3781 aaattcagcc tccatatcat ccaaagttac atccgtatct tcaaccacat catgtaagaa
     3841 accacaggca accgtcacag catccagctt gagtcctgct aaaatacctg ctacctggat
     3901 cgggtgtaca atatagggtt cgcccgattt acgaaattgt agcttatgag cttccgtcgc
     3961 aaaatccaag gccttctgaa caaaagcaac atcttcggct ggaaggtagg tggcagtcag
     4021 cccaacaacc tcttctcctg taaaattgat ttccttcatt tgtttctctc cctaactatt
     4081 tcctattatt ttaccatttt cactggaaaa gaaaaaggaa agcggtaatt catccatact
     4141 ataccattca aaatgacgat aaacaaagaa aaccagacaa acaatttttt agtcattgtt
     4201 cgttttttgt tgcttttatg aaaatttttc tttatttttc ttttgtgttt tcgtagaaac
     4261 cgttgatgtt ttcgttttca atatgtataa tattcttgag attatatcaa atggaggttc
     4321 tcatgaaatt tcgttttagt aagtgtgccc taaccctcag cctagcttta ctggctagca
     4381 ccaacaacgc ccttgtctct gctgaagaaa ccagcacaga tacccctgtt ttgaagactg
     4441 aaacagaaat cagtagctct gtagcaacca gccaagccga agcaacgact ggtgaggttg
     4501 ccacaccgac aactaccgaa actacagccg gtgaggctgt cacgccaact acagaaacca
     4561 ctgaccagtc tgttacacca gtaacagaag aagctgctcc tgttgtagaa accagcaata
     4621 ctccagttaa cgacacaaca gctagccctg ttacagcaac acgcgcagcg gctactgaga
     4681 ctacaactcc tgtcgaaggc cagtctgttg atgttcgtat cctcgcaaca actgacctcc
     4741 atacgaactt ggtcaactat gactattacc aggataaacc tgtagaaaca ctgggtctag
     4801 ccaaaacagc tgttcttatc gaagaggcaa aaaaagaaaa tccaaatgtc gtattggtag
     4861 ataatggaga caccattcaa ggtactcctc ttggaaatta caagtctatc gttgatccta
     4921 ttgaagaagg tgaacaacat cctatgtacg ccgccttaga gactctggga tttgatgtcg
     4981 gcacacttgg caaccacgaa tttaactacg gccttgccta cctcgaaaaa gtaattcgta
     5041 cagccaacat gcctctagtc aatgctaatg tcctcgatcc gactacaaaa gactttctct
     5101 acacccctta taccattgtg aaaaagacat tcacagacac cgagggtaaa aaggttacac
     5161 taaatgtcgg tgttacaggg attgttcccc ctcaaattct taactgggac aaagcttatc
     5221 tagaaggaaa agtgattgtt cgtgatgcag ttgaagccgt tcgcgatatt atcccaacca
     5281 tgcgagaaaa tggcgcagac atcgttctgg tcctttccca ctcaggtatc ggggatgacc
     5341 aatatgaagt cggcgaggaa aatgtcggtt accaaatcgc cagcttgtca ggagttgatg
     5401 cggttatcac aggtcactcc cacgcagaat tcccaggaac tgccgaaaaa ccaagcttct
     5461 atgctaaata ctctggcgtg gatgatacaa atggtaaaat caacggtact cctgtcacca
     5521 tggcgggtaa atacggtgat cacctcggcg tcatcgacct caatctggtc tttaaagatg
     5581 gcaaatggac aactacttct agcaaagcgg ctattcgtaa aatcgataca aaatcatctg
     5641 tagcagatgg tcgcatcatc gaccttgcta aagaagccca taacgaaacc atcaactatg
     5701 tgcgccaaca agtcggtgag acaactgctc caatcaacag cttctttgcc cttgttcaag
     5761 atgatccttc tgtacagatt gttaacaatg cacagatttg gtatgcaaaa caacagttgg
     5821 cgggtacttc agaagctaat ctaccaatcc tatctgcggc tgcaccattt aaggctggta
     5881 ctcgaggcga tgcttcagcc tatacagaca ttcctgctgg cccaatcgcc atcaagaacg
     5941 tagcagacct ttacctctac gacaacgttg tagccatctt aaaagtcaac ggtgcccaac
     6001 tcaaagaatg gttggaaatg tccgcagggc aattcaacca agttgaccca agctcaacag
     6061 agccacaaaa cctagtcaac acagatttcc gcacttacaa ttttgacgtt attgacggag
     6121 taacttatca gtacgatatt acgcaaccaa ataaatacga tcgtaacggt aaggtagtca
     6181 acgaaactgc cagcagagtt cggaatctgc aatacaatgg gcaagatgtg acagctgatc
     6241 aagaattcat cgtggtgacc aacaactacc gtgcaaacgg tactttccct ggggtccgcg
     6301 aagcttctgt caattacttg ctcaatctgg aaaaccgcca agccatcatc aattatatta
     6361 tcgctgagaa agttatcaac cctacagcag acaataactg gacctttaca gatagcatca
     6421 agggactcga cctccgcttc ttgacagcag atcgtgcaaa agaattggta gctaatcaag
     6481 aagggctggt ttacctccaa gcctcagctg aaaacgaagg atttggcgaa ttcaaatttg
     6541 tctacactga gccaaaagta gcgactccag atgaacagca gtcagatcaa ggtaacacag
     6601 gtcaagatat tgtactcgaa tctggtcaac gaattactct tccagcggta aatccacctg
     6661 ctcctgctcc acaacataaa ttggctagtc cacattcaca agcgagcacc aagacactcc
     6721 ccgcaacagg agaagctact tctatgctta gtctgctcgg tctcactttg attggttttg
     6781 tcggcgcatg gactaagaaa aaagaacatt aaaataatca agagattgtt ttttcaagct
     6841 cttttttacc ctcatacact ctctagataa attaatcaaa gcatataaaa atagctcgaa
     6901 gacgtactcg agctattttt atctttatat cgctactccc aataaatcgg tacatagcgg
     6961 gtttctttgg gactttttac tgtataggtt cccaaatcta cccagtttga ttggttcgcc
     7021 aaccgctgtt ctactctaaa ctcctgacaa aggatcgttg tttctaagcg aatgtttcca
     7081 tacttccttg caaaaacaag gtaagaaacg ctttctgaag caaagacgag attccccaaa
     7141 gtcgattttc taggacgact aaactccata attctacctt cttctccacc ataaatcgaa
     7201 gaaatcagat tttcgctcat aatggtttca tgataggttg tttcgagaga agtacgacta
     7261 tcagacgctt gaaaacctcg actagacgta ctcgatagtt gacgaataaa agcctttctc
     7321 acttcatgat tttcaaactc ataggtctgc tctgttgctt gattatacaa aaccaattcc
     7381 gagataatct gatagctagt ccctggaact ctaccgaatt gattaagagc aacaaagact
     7441 atcaagaaaa atccaagagc agcaaaaata ggggtactca atcttttcat gggcaatctc
     7501 catcacatat ctcctcaatc ttcgctaatt gcaacgacca ttgagctatg aacgaatcca
     7561 tcacgatcct gtttattcga atcgttcaga gcgatacatt cactatttgc taacgtgtgt
     7621 tcgagactat tttctctctt tagatgataa atcattcact ttattacaat aatagtatat
     7681 caatatgatt tttaaaaaac aactaatcag gtatgaaaat gtaaaccaga tcatgtaaaa
     7741 tatgaccaaa taactgcaat cacgatggct ggcaacatat tggccacacg aatctttttg
     7801 tcccagatga tattgacacc gacacagaag atgagggcgg agccgataaa ggagagattg
     7861 gcaagggcct gatccgtcat caaaggttca atcaggcggg ccaaaagagt cacagagcct
     7921 tgaaagagaa aaacgggtac tgctgaaaag cctgctccct tgtccaaact cgaggtcata
     7981 atcaaaatga taataaagtc cagaatactc ttaacggcca acaagcgata atcacccgtc
     8041 aatccatctt ggatggctcc tagtatggcc atagcaccga tacagacggt caaagaagct
     8101 gtcaggaagc atctaagaat tgaccatctt ggctgtttcc tgacctttct cggagccaga
     8161 tacccaagcg ctcaaaccaa ccttcgatat gcagtacttc cccaatcaag gtccccaggg
     8221 ctagactaag aaccaaaagc atgctatttt gacttttgag ttgaccatca acgactgtca
     8281 gcagtccttc taaactacct gaaattccta gaaataaaac agctagcccg ctcgccaccg
     8341 ttagtcctga ctgatgccgt tctttcagta aatggccaaa ccaagatcct agcaaacctg
     8401 ctagggcaat ggccaccgta ttgataatgg ttcctaatgc gaacatgatc ctcctttatg
     8461 attcactatc atctggcaat agataataaa cttttccatc ttcaaccaac aatttcacat
     8521 tctccccata attgttaaca gacaatcgct tactagattg ataggaaaca gtttcttgtt
     8581 ctgaaattag cttaactgtc cgttttcgaa catcaatgta acgaatggcc ttatttagct
     8641 ctccagccgc tttaccaatt ccaaaacctg ctgctgcacc gacaaggcct ccaagaaagc
     8701 ctactccagc agcaacatgg gcattcttat ccaactcttt tgcaatatct gcaactactt
     8761 tcataggacc ctcttgggta cgtctattgc gcttagtgtc aatttggaaa aattttatct
     8821 tatctttgtg ccaattggct atcttttcac ctagactatt acaattgttt agatagtact
     8881 catacacata gtaactacta tcctctgacg ccactccttg cgagaagact agatctagct
     8941 tactaagttc cgctaataat ctcaacaagg tttgttgata gaataaatta gtacttaact
     9001 tatcaattaa ctgttcatac ttttcaaaag ataatccttt tcccttagtg atactctctt
     9061 caatagctag attgacctgt tctagtaact tggttacttc agcacggaag ttagcacact
     9121 ccatcaactt tagtcttgca agttcagcat tttcgacata gtctgctgaa aattttgata
     9181 gttgagaaat attaactatc aaagcgcgaa cagtcccttt aaattccctt acttgaaaat
     9241 ccttaacatc gttcaacgtt tctttcattg aatcaagctg accattgatt tcagccatat
     9301 aatactgacc aactaccata gcagcgacct gcatagctcc tgaaacagca gctgcagctt
     9361 ttgctccttt tgcaatttca acttgagcag gagttagtat tgcatgagcc ttaaattttc
     9421 cttccgcacc tttaacaaaa gcacgatact tatccgtttc ccctttgatt ttgtgcaaat
     9481 cgcctatcgg caaatccact ttaaacaatc ccttaggaat attaggctgt ccggctttct
     9541 taagatgatg tttaagtgct ggttgaacta tcttttcaac atgagccaaa atattcggat
     9601 tcgtaatttc atatctctga tatgctgatg aatccaactc actcattttc tgaatgagag
     9661 caaagcaatc atccgaaaca atcaattctc ggtgttcctt ttgttctaat tcactcatct
     9721 cccgattctc cttacctcaa caattccgtc gcgtaactaa tagcagaaag ggcgtagagg
     9781 ggagccgttt ctgctcgcaa gatacgagga ccaagacctg tcttgaccgc tcctgctcct
     9841 tcaaatgcgg ctacttcctc aggcgacacg ccaccttctg gaccgacgat gacaaggact
     9901 gattggccga tttctaagcc agacaagatt ttcaccaggt tggcttgttc gccctctttt
     9961 gcggcctctt cgtaggctaa gataatctgg tcaaagcctg ctagttgagc taggaaatcc
    10021 acttttttct caaataaacg aacagctgga atgcgattgc gtttgctctg ctcggctgcg
    10081 ccttgggcaa ttttttctaa cttttctgct tttttgccta attttttacc gtcccatttg
    10141 accacggacc agtccgctgg aaaggcccag agggctgcca tgcctaactc cgttgccttt
    10201 tgggcgacaa attcgagctt atctcccttg ggaaagccca tggctatagt gacggaaaca
    10261 ggtaattcga cattgtctga cagttcttcg atgatttcaa cagattggtt ctggctatct
    10321 accacgcgcg ccaagcgttt aatcccgtcg tcaaagacta ggacaatctg ttcatctgcc
    10381 tgcaagcgca tgacagaaaa catatgcttg gcggtgtcct tatcgcttat ctggaacacg
    10441 ccctgcggtg ctctgccatt gataaaatac tgctgcatcc tagcctccaa tcacacctga
    10501 gcggtcagcc gtcttcttaa agacacagca attccactcg ccctgaatca tatgggtctc
    10561 aaggaagaaa ccagccgcct ccgcagatgc tcgcaccatg tcccacttat ccgcgatgat
    10621 gccgctcata atcaggtagc cttcgtcctt gaccagacgg taggcatcct cggtcagatg
    10681 gatgagaatg tccgccaaga tgttggcaac gataacttct gctttaatat ctacgccacg
    10741 aagcaaatcg cccgctgcaa catgaatatt gctagtatta gcgttgaggt caatattttc
    10801 ctgagccaca cgcaccgcaa cttcatccaa gtcataggca taaatctcct tggcacctag
    10861 gagggagcta gcaatagaaa ggacacctga acctgtgccg acatcaatga ctgtctcgcc
    10921 accacgcaag acctgagaaa gagcaaagag gctcatcttg gtcgtcgggt gggttcctgt
    10981 accgaaagcc atgcctggat ccaagcggat aatcttctcc ccagctgtcg cctcatagtc
    11041 ggtccaagac ggtacaatgg tcaaatcgtg gctaatgcgg gctggctcat agtatttctt
    11101 ccagttgtcc gcccagtctt cctctgccaa ttcctgactt tctaggctga cctgacctgt
    11161 ttccaagcca aagcctgtca aatccgccaa gcgagtcgcc aagtctgcct taacttcctc
    11221 aatatctaca gtatcaggat aataggccgt aatcacaatc atatccgact gttccacctc
    11281 gggatagagt tcaccaaaac ggtcctcctg ccccacatag tcagccgagt cgctaatagc
    11341 caccccctga ctgcccgttt caatcatgag atttgaaact gcttcttctg catcacgatg
    11401 cacgtgaatc gttaattctt gccatgagtt catgtttgtt gttccttttc ttttctatgc
    11461 gtcaatcact gtattattgt accgatttct agcctatttt acaagttaat gttacgcgat
    11521 ggagccctaa taatactttt tcgaaaattt tctaatcgca ctgcgaataa acatgtgtag
    11581 gaaagtttga gacggtggtt ccaagtttct gaacggaggt gatgcccatg aaagtggaca
    11641 gcaaatctgc tagaaaggct agctcatgcc agatggtaag taaacttact catctggcaa
    11701 cgacaaatcc tataagattt gtctagggca cgcactagct cgagttttga aaaatatcgt
    11761 ttcaaaactc tcacgtcgga gaactctgga tttatattta tcaagtctac ttgttgaaat
    11821 gctgagcttg ataatcgtca tcattttagc tattcgagat aaaaaataac cgtcagcaaa
    11881 ctttgacaca gttctgacgg ttatttaatc taacgaactg aaccatcgtt atggtcctgt
    11941 cagggcgttg agctggaact caacgccttt tctattttta taatagcaaa agtttcgcct
    12001 gcagtcaagc aagaaagaaa acggaatgtc aaatagaatc tattaccctc aattctatac
    12061 caactgcacc gtactgttct aattgttctc gtgaatagta atcttccata tcttcgggtt
    12121 tcgcgcctct gatactgctt tgcgtatacc cacaagacaa taaatccagt tctttgtata
    12181 actgagcaaa attatcaaat atgtgaagat ctaatacttg cacctcgatc gtttgtgtct
    12241 gattttctgt acaataaaaa cggatgcgat ctccaatttg tatatgcttg cgcttctcgt
    12301 cataaagtcg tagctcaatg gtcttctgac cagacttcat catttcaaaa ggttttggag
    12361 ccagtaacat ttcatgaacc aactcaatac ctcggatatg ggtaaaattc tccctccaac
    12421 aagtctgctc tgcctttttc aaaagcctct ccgtcccaag aaatcgcaaa atcttgggct
    12481 tctgggtcca ccaaaaaatc catgaggtca tctaaacctt ggtcggcggt atctttgaga
    12541 aagcctgcga agtaggtcag aaactccgct gaaaagccct tcttggcgtc aaatggcaga
    12601 gcgaccaggt agtcttcctc gtcaaagcga gacttgtcct ggttgtagaa aaggacatac
    12661 tcctctagga aaatatcctc agaagacgca ttaccttcgt cgtccaccgt ttcaatccca
    12721 gccacatttt gcgcttccaa gataaaagcc aactcaactg cgtggttttt cttgtcccag
    12781 ttgagctcgt aatcgtaggt aaaatgtttg tccagtgccg cttccagcac atctaaaaat
    12841 ccatgttttg ccatgtcagt cctctttcga ttttgtgtta taataagtgt accataatca
    12901 gctaacaaaa gaaacgaaag gaagcctatg ccagccaatc tcgcccttcg tatgcggccc
    12961 aaatccattg atgaagtcat cggtcaggaa cacctggtcg gtcctggaaa gattatccgt
    13021 cgcatgattg atgccaatat gctgtcgtcc atgattctct acggtccgcc agggattggt
    13081 aagacctcga ttgcgtccgc cattgctggt acgaccaagt atgcctttcg aacctttaat
    13141 gccacgacag acaaccaaaa acgcctgcag gaaatcgctg aagaagctaa attttctggt
    13201 ggcctggtcc tcatgctcga tgaaatccac cgcctcaaca agactaaaca ggacttcctg
    13261 cttcctcttt tggaaaacgg caatatcatc atgattggag caacgacgga aaatcccttc
    13321 ttctcaattt tgcctgccat tcgcagtcgg gtgcagattt ttgaattaca acctttgaaa
    13381 accagtcaca tccgacaggc cttggaactg gctctgacag acagcgaacg tggttttgat
    13441 tttcccgtca ccattgaacc tgaggccctg gattttctgg caaatgcgac aaacggtgac
    13501 cttcgtgccg cttacaattc tctagaactg gctgtgcttt cgaccaagga aagtgacgac
    13561 ggtagccgcc acattgatct ggacgccgtg gaaaatagcc tgcaaaagtc ctacatcagc
    13621 atggacaaga acggcgatgc ccactacgat atcctctccg ccctacaaaa atccattcga
    13681 ggtagcgatg tcaatgccag cctccactac gccgctcgtt tgattgaggc cgaagatctg
    13741 cctagtctgg cccgtcgctt gacggtcatt gcctacgaag acatcggctt ggccaatcca
    13801 gaggctcaga ttcatacggt gacggccctt gaagccgccc agaaaattgg ctttccagag
    13861 gcacgcattt tgattgccaa tgtggtgatt gatttggctc tttctcccaa gtccaattct
    13921 gcctatctgg ctatggatgc agctctggct gatttgcgga aaaacggcca tctgcccatt
    13981 ccaaatcatc ttcgggatgg ccactatgct ggcagcaagg agctgggaaa tgctattggc
    14041 taccagtatc cgcatgccta tcctgaaaaa tgggtggacc agcaatacct gcccgataag
    14101 ttactagctg cggactactt caccgccaac gacactggaa aatacgagcg tgccttgggc
    14161 atgacacaag aaaagataaa aaatttgaaa aaaaatagac gccaaaatcc ttgatagaac
    14221 tggtttttgg gtacacacgc tttgacaccg cttacatttt tgccattttt ctcttgattt
    14281 ttcaaaaaaa agtggtatta ttaaatcata aataagaact gctgtggtat acgaattcat
    14341 acctatgtgt tgaccgacta tttttgtatt actagggaga caaagatcct ctaacagtat
    14401 gcaagctggc acacccagaa gcaactaagt tagaaacgcg tcacccacct gcttttagcg
    14461 tgcgggatca atacaatcca tggataaccg gtaccaatac agcattttta ttttttacct
    14521 tccttagctc agctggcaga gcagcggact cttaatccgt gggtcgtagg ttcgatccct
    14581 acagggagga ttggttgata tgaggaaagt cttgatttat caaggctttt tctcgttttt
    14641 tgagtgaatt tggtcaaaat ttggtcaaaa agaatccttt cacattgtga agggctattt
    14701 ttttaactta tcccacagga caacacgttt ttcctgtaat gatttctgta catcgatgat
    14761 gcgttggttg gaagagcctc gaaattgcag cataagattg cgcttggtac ggtcataacg
    14821 gccgtcaact agaatatcta aataggatag taactctaac ttatccggag tttctaacat
    14881 catttcttcc catgtgtagc ctgtccaaga ccaaatgtcc ttttctggca gttctttccg
    14941 aattcgcttt acgagtggga ggaccgtgcc tgtgttcaga aaaggctcgc cacccaagag
    15001 agttaagccc tgcacatagg gctggcccaa gtctgctaaa atgcggtctt caagctcctt
    15061 ggtataggga atccctgctt taaaagacca ggttgcaaca ttgtagcagc cctcacagtg
    15121 aaacagacag ccactaacat atagagagca acggactcct tctccatcca caaagttaaa
    15181 ggctttgtag tccattattc gcccttggct aagttcctcg ctcttccatt cttgtggttt
    15241 aggattattc atttcaaata cctgagcata agcaaatgaa atctgatcgt ttggatgaat
    15301 tccgttttac cagtacacag actgttttta tccataaatg gtacttccaa tgctttagct
    15361 cggattgatc ccagcaagct tagtgcggaa ccaatctcaa ttcctttcct gttttgattc
    15421 agcagtttgt cactcccatt aatcctcaat ccagtatctt tctactccgt ctcgaacatc
    15481 ttccaaaacg ccaccacaag ccacaatcgt gcgacggctg gcttgattgt ctgtcgagca
    15541 agtcacaagg accttggaaa tatttttggt tgcggcttcc tgtaaaccaa gtcgcagctg
    15601 gtccttggca tagccctttc ctcgctcggt cggacgaatg gaatatccga tatgaccgcc
    15661 tttattgagc aggaaatcat tgagccgtag gcgtagactg agaaaaccaa gggctcgacc
    15721 agtctggtca aatgacacat attgaatgga aggaacaaaa ccgtctggca gattgagacc
    15781 tgcctcatag tctttgtttc taaaaatcca ttcttcaaag tccacatctt tggagataaa
    15841 gcctccgtcc atagctgagc ctgccgcttc aaactctgcc agcatttcca aaatcgtttc
    15901 cttatccgct atagtcggtc ttcttagttc cattctagcc tccatattgt ctcttgaaaa
    15961 attcactgat gatgtctata tccagtccca agtcctgcac aatttctgcc ttgtggaaat
    16021 catcatagtt gtccttaccg ctccaaacaa aagaattggt cacaatctga tagtccttat
    16081 ctgactcgac tgctctgcta aagcctgaca aataacaggg gccagagttg ataacccttg
    16141 acgaatgctg tctcgctctc cgtctagtgc ctgaggtaaa atcgctatcg gtttggaaaa
    16201 agctgcgtca cgttccgatt tcatctggtc gataatagcc ttgaccgccc tgtcttcttg
    16261 ggtcagtttc tccacctcaa tcaagtcata agcctgaacc tcgtgccgtc catctgcaaa
    16321 acaccgcagg gatagatgac cgacaaagcg accatactga ccagcttggc agatactaac
    16381 tccgccaatc tgactaggtt gttttagaat ggtatgggta tgtccgccca aaatcacgtt
    16441 aagctcaggg aaatccttgg ccaaatgcac atcctcatcg tatcccagat gactgagcaa
    16501 gaccagatga gccgatggat tctgactcac aatctgatcc accaatcgcc gcagagcttg
    16561 tttatggtct tcaaaaatca cattctccga cggtgacgca acctcctggg tttccaaggt
    16621 agtcaaaccg aggacataga ggtttttccc attcatatca aattcaagga catcctcaag
    16681 cggcaccaac tcatctgcca cctccacatc ctgatagcgg agattggagg acacaattgg
    16741 aaactgggca tagtcatcca agcgactaat caactcatct ccgtggtcaa actcatgatt
    16801 gcccaaggtc atagcctgac aaccaatttg attcattagc tcgatttcct tgactcctcg
    16861 gtacatattg aaaaagatat tacccgaaaa gagatcgccg ctgtcaaaga caaaggtcgg
    16921 aactccctct ttttcattcc tagcccgaat gttcgcaatc agttgcgcct tctttggaaa
    16981 attctccatg taggaatgca tatcattggt atggagaatg ctaatatctg tatagtccat
    17041 actatttttt cttatttttt gcttgtttga gcaattcctg cacacgcgct tttttatcct
    17101 gcttcacatt agaattcttc tcgtgatagc gtgtcaccag ggccttcccc ttatcgtcta
    17161 attgatattt tcccattgtt ttctcctctt tttttatctc ttatttgttt ataataaact
    17221 tccacagcta actggaactg tggaagctct acatagtctg tttattactt ataagctcga
    17281 cccattcatg tgtttcacac gcgccgaaat ttccttgtga cggcctttta ccatcggacg
    17341 ggcctgtgga ttgcctagat aaccacaagt tcgtttaaca acatccaccg acttaggatc
    17401 gctattcccg caatttggac acttgaagcc acgctccgtc ggctcaaaat caccttcaaa
    17461 atcgcaagcg taacaatggt caattggagt attggttccc aagtaaccaa cacggtcata
    17521 agcatagtcc caaacagctt ccaaggcctt tggattttgt tgcagcacag ggtattcaca
    17581 gtaatggata aatccaccac tggcacctac agcaggataa attttctcaa agtccagttt
    17641 ttcaaacggt gttggatttt tgcgtacatc ataatggaaa ctgttagtgt aatattcttt
    17701 atccgtaatg tccttaacga tgccaaattt ctctgtatcc atacggcaga agcggtctgt
    17761 caggctttca gatggtgtcg aataaactga gaaatgataa ccatattcat ccgaccaatc
    17821 ttcaaccaag gctttcattt tcttgataat atccaccgtg aaatcttttg cctctgggtt
    17881 ggtctcccat tcgccaccgt aaaatactgt tgcgacttca tacaaaccaa tgtaccccaa
    17941 agatacggtt gctcgacgat ttttaaagac ttcatctact gcgtctgtct tagccaagcg
    18001 tttgccgaat gccccatact gatacaaaat tggtgcattg gcaggtgtcg cctccttgac
    18061 ccgctccacg cggtaaacca aggcatcctt agcaatggcc atacgttcta caaagatttc
    18121 ccagaactta tccttatctc cagcagactc catggcaatc cgtggcaaat tgacggttac
    18181 gacacccaag ttcatccgac cagatgtcac atcctgccca ttttcatcct tccaaccttg
    18241 aaggaaagaa cggcagccca ttggcacctt gaaagaacct gtcaactcaa caatcttgtc
    18301 ataagaaagc atatctggat acatacgctt ggtcgcacat tcaatcgcca attgcttgat
    18361 gtcatagttt ggagaatctg gctccaagtt caatccacgc ttaacggtga aaatcaactt
    18421 aggaaagata gctgtccgac cttctcgccc tagacccttg atacgaatgt tcaaaatcgc
    18481 tttttgaatt tctcgctcaa accatgatgt ccctaaccca aaaccgagtg aggtaaaggg
    18541 tgtttgtcca ttggaagtaa agagggtgtt gatttcatac tccaaagact gcatagcatc
    18601 atagatgtct ttttgcgttt ttgcacgcgc atattcttct tgcttgtctg gcaataccca
    18661 atccttggcg tctttcaaat gcttttggta attgagttcc gcataaggcg ccaaaacttc
    18721 atcgatacgg tcagctgagc aaccaccata ttgactagaa gccacattgg caatgatttg
    18781 tgaaatctga gccgtagctg tttggataga cttcggactt tctacatcgg catttcctat
    18841 cttgaagcct tgtgccaaca ttcctttgaa atcaatcaaa caacagttgg tcattggtgt
    18901 ataagggctg taatccaaat catgataatg gatgtcaccc ttttgatgag cattggctac
    18961 atgagctggt aataatttaa gaccgattga cttgccgaca atccccgctg tcaggtcccg
    19021 ttgagtattg aacacatccg cgtccttatt ggcattttca ttgaccacag actggtcctt
    19081 gctcaacagc ttatgaatct caaaattaat atcggtagcc tgatgacggc gaaaatcacg
    19141 gcgtgttcgg tattgaatat aaagctccgc caaatcatat aaatgagcct ttaacaattc
    19201 ctgttcaacg accgtttgaa tttcgtaaat ttgaacatct ttttcaaatc ggcgaccaat
    19261 ttcagccaaa acagcttcta atacaatttt taaacctgcc tctgaaacag gatgttctaa
    19321 ttcttggttt gcccgccgaa gagcagaaaa aatcttatcc tggtcaaagg atactgtccg
    19381 tccatcacgt tttaaaacta ataattctat actcggtaag acattttctt gcacattcat
    19441 ctgacaaacc tccaaaattc ttcacttcta ttagtgtagc acttcacaaa acaaaaatca
    19501 atatcttgtg taaaaaaata ttaaacaacc tatccatgca ctatatatag gtcttgaaaa
    19561 ttctatcaat tggaaaacaa ctgtgccaaa tttcaccact cgacaaggat gaattactag
    19621 attgaaatat gacaacagat tgggcaaagg tctaacttct ctatcagaaa acctaaaaaa
    19681 cagccctcta acagggctgg ctctatgtat tgaaaatagg ctagggcggg tcaccacatg
    19741 cctatttaaa attgaggatt tgaataagag gcgaaaaatt ctctagtccg ttcttcttta
    19801 ggatgatgga aaagctcctc aggtgtcccc tgctccagga tacggccgtt ttctagaaat
    19861 aataccttat ccgccacttg gtaaatgaaa ttcatgtcat gactaactaa aatcatcgtt
    19921 tgtcctgtct tagccgcatc ggcaatggaa cgttctactt ctccaaccaa ctctggatca
    19981 agcgccgaag tcggctcatc tagtagcaaa atgtctggtt gcatggcaag agcgcgtgca
    20041 agagccacac gttgcttttg accacctgac agatgtcttg gataatggtt ctcacgttct
    20101 gacagaccga cctttctcaa ttcttctttg gcaagggcgg ttgcagatgc gtcatccatc
    20161 cgcttgacaa ttttaagccc ttccttgacg ttatcaagag ctgtctttcg ttcaaacaga
    20221 ttaaactgct gaaagaccat agccagtttg cggcgtaagg tcaatatctc ctcttttgaa
    20281 atattggtaa aatcaactgt aaaaccatca atttcgatac tccccgcatc tgcctgctcc
    20341 agatagttca gactacgcaa aatggttgat tttcctgctc cagatggtcc aacaagggca
    20401 ataacctgcc ctttttcaat gtccatatcg attccatcta gtactttttg tcctgaaaat
    20461 tccttgacta aattgcgaat tttaatcatt agcgatcacc tccaactcca gaaatatcta
    20521 ctgattcagg ggcctgaata gccattttat tttcaaggaa acggccgaaa gactcaatca
    20581 gaacagagag cgcccagtag accaaagaga cagaaatgta ccgctcaaag tagcgatagt
    20641 ctgccccgcc ttgaatctgt gcctgtgcat agacctcaac gatacccgca ctgaaggcta
    20701 gggaagttcc tttagtcaga ccaatcaagg tgttaatcaa cgacggagtt gcaatcacag
    20761 ccgcattagg aatgatgatc cgacgataaa cctggccaga agtcatacct aaggaacgag
    20821 ccgcctcaat ctcccctgga ctaacagcct gaatcgcagc acgaatagac tcactcatat
    20881 aggctgcctc attaaatgca aaggctgtaa tcgcaaagac agctgcagga atagcattga
    20941 tattccaatc aagaccatat tcctgattga gccctctaag aaccaatgga attccgtagt
    21001 aggtcaacat cagctgcacc aagataggag tgcctcgcaa aaaactaaca aaaactgcct
    21061 gaacgggata taagaatcgc acacgattaa tctttacaat cgcaaaaacc aagcccaata
    21121 tcaaaccaaa aaaagcacct gcgagcgtca agccaatcgt aatcggtaaa cgttcaataa
    21181 tggagggtag ggcatcaaaa acagccctaa tactaaatag cttaccatcc ggtaaccact
    21241 ctaaaaaacc ttgataccat gccggtcctg ttattcctaa tacaccaatc atactcttct
    21301 ccaaacattt aaaaatgaca gattttctgc cgtatactct attttatcat gtaaccaccc
    21361 acatcaacct tatatatatt ttatggctgt gataagtaat cttaatgatt ataaaaagac
    21421 aatgaaaaag aaacagccca cttggactgc tccctcctgt cacaatacta tcgactccta
    21481 ttcattagga acagctagtt cctccgccgt tggagcatag tcttttccga agaattgctc
    21541 tgtcaatttc gcaatggtcc catcttcgtt caaagccttg atacggtcgt tgacaaagct
    21601 ttgtagagcc gtattgtccg aagaaaatac atagtaaata aacggttttt ctgctgcttc
    21661 aagctcgatt gttttaagat ttgtcaaatt ttgatctgca ataatagcat taaccgtagg
    21721 ggcatcaaaa attttaaaat catacttgcc atcatttata ttggtcaaaa tctgtgtgat
    21781 attttcacca gtatagttga tgtcgactgg tttatccgta tgctgagtat tgtattcctc
    21841 tagctgagca gctgttgttg tccctgtaac tacctgtgta gaatgaccac caatatcatc
    21901 ataagactga atatccgtat cttttggcac agctaaaacg gatggtgtag aggccgttgg
    21961 ataagaatag aggtattttt caccacgctc ttttgtatag gaagtattat tccctaacaa
    22021 atcaaagcgt cctgaatcca agccagggaa ttgaccgcta ccatctgttg tttcaaaggt
    22081 caattcatac tggtcagaac catcaaagat agctcgagcc aattcaatat caaaccctgt
    22141 caattctcca ttctcatctc gataagaaaa aggcttggta gtcccaacag ttcccattac
    22201 gatggtttct tttttatccg cttctgaaga actagtgttt gatgagtttg aggtagacga
    22261 gcaagctgcc aaagcaactg tcgcaagagc tgtaatacca gccagtgata gaatagttct
    22321 taatttcata gtaattctcc ttttgtataa gcaagtcaga cctacaaggt ctgcacaaaa
    22381 taatcaaata gcttctgatt gccgccactt tgatcaatca gaagttccgg atgccactgg
    22441 acacccagaa aacgtgtctc atccattgat cggacagcct caataatacc atcatccaca
    22501 gaatgcacaa tcgcttctag cccctgaccc agattctcta tcgcctggct gtgaatagaa
    22561 ttgacagcta ctctctgacc aaaaatacta gccagaggcg ttgcctcttt acattctacc
    22621 tggtgaatca gatcaaaagg caaggaccga tgcccctcta ccgcttgttt gagagttcct
    22681 ccacgtgcaa cattgaaaag ctgcatcccc ctgcaaatcc ccaaaatcgg tttttcctgt
    22741 ctcaaggctt cgtggaccaa tttcagttca aattcgtcac gttccttgaa atagtcatcg
    22801 ctttcgatga gtttttcttg accgtaaaac tgaggtaata catgttgacc acccgtcagt
    22861 aataacttat caatcgccga cacatagtcg acaacatccg tttcaccaga caaggggata
    22921 taaaaaggaa gaccccccgc tcgcttgatt ccatctgcaa agttacgaga caacgataaa
    22981 ttcataatcg gaatcccctc tgcgacaggc ttttcattac tggtgatgcc aataatcggt
    23041 ttccccatcc tgccctcctt tcgtaatgta tagacactat cttatcatgc tctctctttt
    23101 tcgtatattt taaattattt atagccagcc ataaaaaata tttatggatc aaaaaaagag
    23161 cctattctg
//
LOCUS       DASGBY010000017        22506 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.017, whole genome shotgun sequence.
ACCESSION   DASGBY010000017 DASGBY010000000
VERSION     DASGBY010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22506
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.017"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..263
                     /locus_tag="U1396_000530"
     CDS             <1..263
                     /locus_tag="U1396_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEM5341740.1"
                     /translation="KIIISQATGFQKPQIEIFNLASKNFNFLPNQTLYIGDNFENDIE
                     GSLNAGWKSIWFNHRKRKLPIDTKIHEVQTAKDLKELIYRLL"
     gene            complement(307..2172)
                     /locus_tag="U1396_000531"
     CDS             complement(307..2172)
                     /locus_tag="U1396_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEM5341741.1"
                     /translation="MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLD
                     FPSYEEMVEMYNVNFTNNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINR
                     IGYETMMELTGGRFRFIVATHTDKNHVHNHILINAIDRNSDKKLIWNYTLERNLRMIS
                     DRISKVAGAKIIEKRFSYRDYQKYRQSSHKFELKQRLYFLMQQSKSFDDFLEKAVHLH
                     VHIDFSQKHSRFMMTDRAMTKPIRGRQLSKRDLYDEEFFRTYFAKQEIESRLEFLLNR
                     VNSLEELLTKAKELNLTIDLKQKNVIFILEENGKQFSLSHKKISDKKLYDVNFFQDYF
                     KNKEVGDSEGLENLQEQYHAFQEERDKEKVATEEIEEAFEEFKKKRDAVHEFEVELAG
                     HQIEKLVDEGIYIKVSFGVKQSGLIFIPNFNLDILEEENQTKYKVYIRETTSYFIYNK
                     EHSDKNQYIKGRTLIRQLTNDSRAIPYRRPTVERLQEKITEINLLIELTETDKRYQDV
                     KDELVAEIAELDVKLNQTNEKIAILNKMAEVLINLKSDDPNSRKLARYDFSKLNLTES
                     ITLEQVTEEIRVLQEDLGHYLDEYEGLSRKLETFVKILNTNKQTEHEFHGDIALE"
     gene            complement(2159..2524)
                     /locus_tag="U1396_000532"
     CDS             complement(2159..2524)
                     /locus_tag="U1396_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HEM5341742.1"
                     /translation="MVYRYRTNLKKVFLTDSELHQLNERIDKSHCQNFSVYARKVLLN
                     PNMSFVTINTDTYDQLVFELRRIGNNINQIARAINQSHLISQEQLQELSKGVSELITG
                     VEKEFQVEVKRLKELYGSH"
     gene            complement(2534..2893)
                     /locus_tag="U1396_000533"
     CDS             complement(2534..2893)
                     /locus_tag="U1396_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341743.1"
                     /translation="MGQEIKLIRKQFRITRQEEKQIKEMMREQNLDSFSEFLRQNLLK
                     KNYQDRIFESWFSLWQSQKFEQISRDVHEVLVVARENHQVTQEHVSILLTCVQELIAE
                     VNQVQPLSRGFREKYMR"
     gene            complement(3234..3476)
                     /locus_tag="U1396_000534"
     CDS             complement(3234..3476)
                     /locus_tag="U1396_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341744.1"
                     /translation="MNLISIKEFVELTINNNPDINPKELEETLRAVLEEKEGGARCMN
                     CGSPIWVAGSALVGSYMCFTCLTGEADGSDDFEVLG"
     gene            complement(3530..4597)
                     /locus_tag="U1396_000535"
     CDS             complement(3530..4597)
                     /locus_tag="U1396_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HEM5341745.1"
                     /translation="MPNNVFELINFKDYFPLDLDITDKTRLVYRPVLAPTQLKCSLEP
                     ALTEEQLYVHMKENSNWSFKYNGNDDFYKQDCIDFLRDIDFQSFSQYGKLVDRKYIEA
                     KRVYLFDSYFRNFLQEILERIEVFLKKSTADALTIGYNKPSYIFEDDALYYSEQSKYR
                     KENPKRLDIVLKTKYHLSRLILEKQDDATIKNQINQYGVVLPWTVFRLMTFGNIASFL
                     VALQPEYRNKVAAYISLPLDKDDNIPAKILLSWCNALRYLRNICSHNGRLYGRLHHTL
                     PAFHHSDRELLVTDSENDSKTLFIYFIAMRHLILSMSIETKNFWNKKLQKLLEESNQE
                     QVDLRHYGFPKNWMDLLAIKI"
     gene            complement(4775..5071)
                     /locus_tag="U1396_000536"
     CDS             complement(4775..5071)
                     /locus_tag="U1396_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341746.1"
                     /translation="MKFFQKKKQNQDQFKRLIHRLSEMSDTELTKVEQLLDVVFDTNF
                     KPDRNVELSQSVITDEEQSLDKSIQEAKNKLNTEQLEKNIERFRQGRRESNNNK"
     gene            complement(5121..5510)
                     /locus_tag="U1396_000537"
     CDS             complement(5121..5510)
                     /locus_tag="U1396_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5341747.1"
                     /translation="MSKTWNFDQPLDDVKPTSSHEERAKIAALFHKQDEKPIEEVDYV
                     AAFEQQQKESESKDVQTPESKVKQSQPKKVNITSDYKQHLADTIAQNNKDISACQKQI
                     EELHQLIDEKKIQNKKLQAISVAIDDL"
     gene            complement(5507..5734)
                     /locus_tag="U1396_000538"
     CDS             complement(5507..5734)
                     /locus_tag="U1396_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341748.1"
                     /translation="MSVIERLAEKVARQEEKVSRETEKLEHYRDQLQTAMYSTFIKRQ
                     QSSQLSFHEALEQAFGKETTLHPNYRNEDTE"
     gene            complement(5788..6864)
                     /locus_tag="U1396_000539"
     CDS             complement(5788..6864)
                     /locus_tag="U1396_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEM5341749.1"
                     /translation="MTRIKAVKQKAILNVAESLGYSFRRLSGHIYEHPDHDSFRIFAD
                     TNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYLETGDFEQAKLIEETYQPFQYYLHE
                     EPFQQARIYLKDIRGLSDQTINTFGRQGLLAQATYQSEPVLVLKSYDHNGTLQAASLQ
                     GLVKNEEKHDRGYLKKIMKGSHGYVGISFDIGNPKRLIFCESVIDMMSYYQIYQKQLS
                     DVRLISMEGLKLSVIAYQTLRLAAEEQGKLAFLDTVNPSRLSHYLQAIQETTTFFQTH
                     SNALTLAVDNDEAGREFCQKLSDKGLPLSQDLPPLQGLETKLDWNDIVKRQKELSLRD
                     LIQSAQTKVIRDHPPPKREHTFEL"
     gene            complement(6903..7541)
                     /locus_tag="U1396_000540"
     CDS             complement(6903..7541)
                     /locus_tag="U1396_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017771980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM5341750.1"
                     /translation="MLNKVKARFLIGVGGLIAVSFMVMIGYTIGSQSVSKQTEHQIRA
                     EANKLVTKEKQEERATVLSDELVKEFLTQYFTKVQLGENNTRIKPYMTDSAFSEEETN
                     QNKAINQVYKDYMLDYRFESASIFVNTESNVALAEVSYQVTYVSDLSEQQQRTTQTET
                     KTVMLSYSKVSDKLLVNQLTIWNGKLEDMKEATDGANSSIPTIQGTTTSENN"
     gene            complement(7637..7927)
                     /locus_tag="U1396_000541"
     CDS             complement(7637..7927)
                     /locus_tag="U1396_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000893084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341751.1"
                     /translation="MLEQILQSLLIIAAIGLMLLVLYRIVKVSGALFLIGLISGLVFI
                     EIYGVYLFFTERYLYSEDLATNGVWSFTGFFIALNLFLVLSFIIKWWRNRIV"
     gene            complement(7941..8240)
                     /locus_tag="U1396_000542"
     CDS             complement(7941..8240)
                     /locus_tag="U1396_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000194854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341752.1"
                     /translation="MTKTVEEMRYQLEEWLSQGFTSSEDRANYQTLKEQYEDETLDYS
                     FSKREITGQLELIITTRENDFPSLDEVTKAEYLDLVAQLDDLDKRQADYYRKQLA"
     gene            complement(8311..15135)
                     /locus_tag="U1396_000543"
     CDS             complement(8311..15135)
                     /locus_tag="U1396_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001071192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEM5341753.1"
                     /translation="MNQEVLLQMMRATIPRDRALLEAFLYYQAEHFDEEWDSLIRQFM
                     TNRQGIKRSVQVLHFETDVSAFVQASPYDTAHDLLTYTQVFGQTGLQKLDKLSPSEKD
                     LVIEVALFNLATRFQLLDSNGHYQTISPDSLLQKSRGANLVNVYRVANNLADRISRDI
                     EQFLLTYEPELETRADETVLENEETVDEHKVSSNQAISFREDGSLIIASLDVDLSQLN
                     VQTGKTSHLPAYEELSLRRKFEILTYFDQIRNERSKVPSFRRGDFDTEMEMTPIFEGE
                     ELLTYLEADGSPNELKRTLTTVEEKELEKIGQAIRIENQEKLTQVGIDLSQFEPDQVG
                     ILLDAAGRFRLKNSDLALLGGYPKASVTQLALATELLQMGLSHEKVEFFFGSQLSLEE
                     LRQVAYAFLHQELSREDAEQFEMDKGNQPDLTFRDWKSKLEKAESKVVVDEELAENPL
                     VQRVLDTYPLGSLVSYKGQDFEVVSVSDARLNGLIRIELVNDFSDIIEQNPVLYVRTW
                     EEVSQALHQPKAEPQTELEEADQELNLFSFLEEEPVQSIGLLEPDGSEKGQNDTDLEE
                     TDSQIPEEVVVETIPEIPVTDFYFPEDMTDFYPKTARDKVETNIAAIRLVKNLEVEHR
                     NASSSEQELLAKYVGWGGLANDFFDDYNPKFSKEREELKSLVTDKEYSDMKQSSLTAY
                     YTAPALIRQMWDKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSELYGVELDTITG
                     AIAKHLHPNSHIEIKGFETVAFNDNSFDLVISNVPFANIRIADNRYDRPYMIHDYFVK
                     KSLDLVHDGGQVAIISSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAGTSVT
                     TDMLFFQKHLDKGYVADDLAFSGSIRYEKDSRIWLNPYFDREYNSQVLGTYEVRNFNG
                     GTLSVKGTSDNLIASVEAALHQVKAPREIDRNEVIINPDVLTKQVIDTSIPAEMRENL
                     GQYSFGYQGTMIYYRDNKGIRVGTKTEEISYYVDEEGNFKAWDTKHSQKQIDRFKSLE
                     VTDSTALDVYVTDDAAKRGQFKGYYKKTVFYEAPLSDKEVARIKGMVDIRNAYQEVIA
                     IQRHYDYDKGTFNHLLGKLNRTYDSFVKRYGYLNSAVNRNLFDSDDKYSLLASLEDES
                     LDPSGKSVIYTKSLAFEKALVRPEKEVKKVHTALDALNSSLADGRGVDFAYMMSIYQV
                     ESQMTLIEELGDLIMPDPEKYLNGELTYVSRQDFLSGDVVTKSEVVDLFVKQDNQDFN
                     WSHYAGLLEAIKPARITLADIDYRIGSRWIPLSVYGKFAQETFMGKAYELSDQEVATV
                     LEVSPIDGVITYQSKFAYTYSNATDRSLGVPASRYDSGRKIFENLLNSNQPTITKQVV
                     EGDKKKNVTDVEKTTVLRAKETHLQELFQGFVAKYPEVQQMIEDTYNRLYNRTVSKSY
                     DGSHLTIDGLAQNISLRPHQKNAIQRIVEEKRALLAHEVGSGKTLTMLGAGFKLKELG
                     MVHKPLYVVPSSLTAQFGQEIMKFFPTKKVYVTTKKDFAKAKRKQFVSRIITGDYDTI
                     VIGDSQFEKIPMSREKQVTYINDKLEQLREIKLGSDSDYTVKEAERSIKGLEHQLEEL
                     QKLERDTFIEFENLGIDFLFVDEAHHFKNIRPITGLGNVAGITNTTSKKNVDMEMKVR
                     QVQAEHGDRNVVFATGTPVSNSISELFTMMNYIQPDVLERYQVSNFDSWVGAFGNIEN
                     SMELAPTGDKYQPKKRFKKFVNLPELMRIYKETADIQTSDMLDLPVPEAKIIAVESEL
                     TQAQKYYLEELVERSDAIKSGSVDPSRDNMLKITGEARKLAIDMRLIDLAYSLSDNQK
                     ILQVVDNVERIYREGAEYKATQMIFTDIGTPKSKEEGFDVYNELKALLVDRGIPKEEI
                     AFVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSD
                     IVQRNGRLIRQGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTSKDPVRSAE
                     DIDEQTMTASDFKALATGNPYLKLKMELENELTVLENQKRAFNRSKDEYRHAISYCEK
                     HLPIMEKRLSQYDKDIAQSLATKSQDFVMRFDNQKMDNPTEAGDYLRKLITYNRSETK
                     EVRTLASFRGFDLKMTTRGPSEPLPETVSLMIVGDNQYTVALDLKSDVGTIQRISNAI
                     DHILDDQEKTQELVKDLKDKLQVAKVEVEKIFPKEEEYQLVKAKYDVLAPLVEKEAEI
                     EEIDAALAKFSEDTTAQKKQQLALEI"
     gene            complement(15184..15735)
                     /locus_tag="U1396_000544"
     CDS             complement(15184..15735)
                     /locus_tag="U1396_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017370834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341754.1"
                     /translation="MAWNFDTMKEALSEMEKVDYQEFIKAFLSLELSISDRTILNQVY
                     QDYMDEDDLSLISDELRVKVDSYQDEVQVDMTDILEKLYRTGEGSSFIMDLMSSNSLS
                     DTLEQYEVLDSDDYSPLSFETLQAMIQQELAISSQDYFGDLVHLALQKDLLDQKSHFL
                     QHYVATVMEGIPQESDQRALVLD"
     gene            complement(15719..15910)
                     /locus_tag="U1396_000545"
     CDS             complement(15719..15910)
                     /locus_tag="U1396_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017370833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEM5341755.1"
                     /translation="MNPKTIYEKDSDQDGLTDAQELALGTNPQSVDTDGDGQADLEEL
                     QSGHSPLVPQKELCDGLEL"
     gene            complement(15911..20806)
                     /locus_tag="U1396_000546"
     CDS             complement(15911..20806)
                     /locus_tag="U1396_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000167702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5341756.1"
                     /translation="MTKTCNHHFLVNQEKGEKHVFRKSKKYRTLCSVALGTMVTAVVA
                     WGGTVAHADEVSSSVDTTIQRTENPATNLPEAQPNPVSEQTESLGSTGQSNGTIAVTV
                     PHDTVTQAVEEAKAEGVSTVEDSPMDLGNTRSATETSQQISKAEADAQNQVVAINEVT
                     ETYKADKATYESNKARIEQENKVLSQAYEGANQTGKETNTWVDTKVNDLKSQYADADV
                     TLIEQVVSAGNGTSVLDYTNYGKTVETIQSTNEQAVADYLTKKTKADDIVAKNQAIQK
                     ENEAGLAKAKADNEAIERRNQAGQAAVDAENRAGQAAVDQANQEKQQLVSDRAAEIEA
                     ITKRNKEKEAAVRKENEAIDAYNTKELERYQRDLAEISKGEEGYISEALAQALNLNNG
                     EPQAQHGAITRNPNQIISTGDTMLGGYSRILDSTGFFVYDSFKTGETLSFNYQNLQNA
                     RFDGKKISRVTYDITNLVSPAGTDAVKLVVPNDPTEGFIAYRNDGNGDWRTDKMEFRV
                     VAKYFLEDGSQVTFSKEKPGVFTHSSLNHNDIGLEYVKDSSGKFVPINGSTVQVTNEG
                     LARSLGSNRASDLNLPEEWDTTSSRYAYKGAIVSTVTSGNTYTVTFGQGDMPQNVGLS
                     YWFALNTLPVARTVTPYSPKPHVTVELEPIPEPITVTPDVFSPKTFTPEKPVTFTPKP
                     LEEVVQPSLSLTKVTLPVKPIPKELPTPPQVPTVHYHAYRLTTTPEIMKEVVNSDQAN
                     LHEKTVAKDSTVIYPLTVDAISPNRAQTTSLIFEDYLPAGYLFDKETTQKENGNYVLS
                     FDETKNFVTLTAKENLLQEVNKDLTKVYQLNAPKLYGSVQNDGATYSNSYKLLLNKGT
                     TNAYTVTSNVVTVRTPGDGETTTLITPDKNNENADGVLINDTVVALGTTNHYRLIWDL
                     DQYKGDRSAKETIARGFFFVDDYPEEVLDVVENGTAVTTLDGQKVSGITAKNYASLNE
                     APKDLQDKLARAKITPTGAFQVFLPDDNQAFYDQYVQTGISLALLTKMTVKDSLYGQT
                     KTYTNKAYQVDFGNGYETKEVTNTLVSPEPKKQNLNKDKVDINGKPMLVGTQNHYTLS
                     WDLDQYRGIKADNSQIAQGFYFVDDYPEEALLPDEAGIQFVTSDGKTVSGITVKAYSQ
                     LSEAPKTLQAALSKQKIQPKGAFQVFMPEDPQAFFESYVTKGENITIVTPMTVLETML
                     NSGKSYENVAYQVDFGQAYETNTVTNFVPKVTPHKSNTNQEGISIDGKTVLPNTVNYY
                     KFVLDYSQYKDMVVTDDVLAKGFYMVDDYPEEALTLNPDGIQVLDKAGNRVSGISVST
                     YASLSEAPEVVQDAMAKRQFTPKGAIQVLSSDDPKTFYETYVKTGQTLVVTLPMTVKN
                     ELTKTGGQYENTAYQIDFGLAYVTETVVNNVPKLDPQKDVVIDLSHKDASLDGKEVAL
                     HQTFNYRLVGALIPSNRATDLFEYGFEDNYDEKHDEYNGVYRSYLMTDVILKDGSVLK
                     EGTEVTKYTLQQVDTENGLVLISFDKSFLETISDDSAFQADVYLQMKRIAAGQVENTY
                     LHTVNGYVISSNTVVTHTPQPEEPSPNQPTPPQPPIETIEPPVPASVLPNTGEQETLL
                     GLIGAGILLGTAYGLKKKEEK"
     gene            21088..21678
                     /locus_tag="U1396_000547"
     CDS             21088..21678
                     /locus_tag="U1396_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000037247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system AbiEi family
                     antitoxin domain-containing protein"
                     /protein_id="HEM5341757.1"
                     /translation="MSKKEILLEFIENHNGIITYKDCKALKIPTIYLTRLEKEGIIYR
                     VEKGIFLTQNGDYDEYYFFQYRYPKAVFSYISALYLQQFTDEIPQYFDVTIPRGYRFN
                     TPPANLNIHSVSKEYSELGITLVKTPMGNEVRVYDFERIICDFVIHREKIDTELFVKT
                     LQHYGNYSKKNLTKLYEYATKMNTLDKVKQTLEVLV"
     gene            21675..>22506
                     /locus_tag="U1396_000548"
     CDS             21675..>22506
                     /locus_tag="U1396_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HEM5341758.1"
                     /translation="MNKAKLTALCHKISKNTGLTFNSVMTYYFLEVILKKLSQSTYSN
                     HYIFKGGFLLSNVIGVESRSTVDIDFLFHQMTLSEDTVKQQLKEILADSEEGISFVIQ
                     SITAIKESDDYGGYRATISCQLENIKQVIHLDIATGDVVTPQPITYDYKAIFDEENFP
                     IIAYTIETILAEKLQTIYSRNFLNSRSKDFYDVYILSKLKKEDIDFIQLKNACQRTFS
                     YRETELDFVKIIELLERFKSDPIQNKQWQNYSKKYSYTKGISLADVLDEMIRLITVLI
                     S"
BASE COUNT         6243 a         4675 c         4072 g         7516 t
ORIGIN      
        1 agaaaattat cattagccaa gcaactggtt tccaaaaacc tcaaattgaa atttttaatc
       61 tcgcttctaa gaatttcaat tttctcccca accaaacact ttatattggt gataactttg
      121 aaaatgatat tgaaggaagc ttaaatgctg gttggaaatc catttggttt aatcacagga
      181 aacgcaaact acctattgat actaaaattc atgaagttca aactgctaaa gacttaaaag
      241 aactaatcta ccgattactt taatttcaat atactatttt ttgaccagtc aatagactgg
      301 ttttatttat tctagggcaa tatctccatg aaattcgtgt tctgtctgtt tattagtatt
      361 aagaatcttg acaaatgttt ccaacttcct agatagtccc tcatactcat caagataatg
      421 tcctaggtcc tcttgcaata ctcgtatttc ttcagtcact tgttctagtg taattgattc
      481 tgtcaaattt agttttgaaa agtcatacct tgctagtttt cgactattcg gatcatcact
      541 ctttaggttg ataagcactt ccgccatctt gttcaagatg gcgatttttt cattggtttg
      601 atttagtttg acatctagct ctgctatttc tgcgaccagt tcgtctttaa cgtcttggta
      661 tcttttgtct gtctctgtta actcaatcaa gaggttaatc tcagtaatct tttcttgaag
      721 tctttcaaca gtcggtcgtc tgtatggtat tgctcgacta tcgttggtta gctgtctaat
      781 caaggttcgt ccttttatat actgattctt atccgaatgt tctttgttat agataaagta
      841 agaggttgtc tcacggatat agactttata ttttgtctga ttctcttctt caagaatatc
      901 caaattgaag ttgggaatga aaataagacc actctgcttg acaccgaagg acaccttgat
      961 ataaatgccc tcatcaacta acttctctat ttggtgtcct gcaagttcca cttcaaattc
     1021 gtgaacggca tctcgcttct tcttaaattc ctcaaaggct tcctcaattt cttcagtggc
     1081 taccttctcc ttatcacgtt cttcttgaaa agcatggtac tgctcctgta aattctctaa
     1141 gccttctgaa tcaccgactt ccttattttt aaaataatct tgaaaaaaat taacatcata
     1201 taatttctta tcacttattt ttttatgact cagactgaat tgctttccat tttcttcaag
     1261 tataaagatt acattttttt gttttaagtc aatggttaga ttcaattctt ttgcttttgt
     1321 tagtaactct tctaaagaat tgacacggtt caacaaaaat tctaaacgac tttcaatctc
     1381 ttgcttggca aaatatgtac gaaaaaattc ttcatcatat aaatctcgtt tgctgagttg
     1441 gcgtcctcga attggttttg tcattgctct atccgtcatc atgaatcgac tatgcttctg
     1501 actaaaatca atatgaacat gtaagtgcac cgctttttct aaaaaatcat caaaggactt
     1561 tgactgctgc atcaaaaaat aaagacgttg ctttagttca aatttatgac tagactgcct
     1621 atatttttga tagtcacggt aagagaaacg cttctcaata attttcgctc cagccacttt
     1681 agaaatacga tctgaaatca tacgaaggtt tcgttccaag gtatagttcc atattaactt
     1741 tttatctgaa ttacggtcaa tggcgttgat taggatgtga ttatgaacat gatttttgtc
     1801 tgtatgagtt gccacgatga aacgaaaacg gccccctgtt aattccatca tggtctcata
     1861 accaatgcgg ttaatttctt caggtgtcag attatcttca ggagaaaatg attgaatgag
     1921 gtgatgggca tggatatttt gttgatgttt ttcttgtcgg tcatttcttg attcgtacaa
     1981 cttgtcgtta ttggtaaagt tgacattgta catttctacc atttcttcat agctagggaa
     2041 gtctaaataa ttgctcatgc caaaatcaga taccaatttc aaattgtccg ttttatcagg
     2101 attgagaata tacttaatta aacgcctacg gtattttttt ccgtgtgtcg caaagtgttt
     2161 agtgactacc atagagctcc ttcaatcttt tcacttccac ttgaaattct ttctctacgc
     2221 cagtaattaa ctcactaact cccttactca attcttgtaa ctgttcctga gaaatcaaat
     2281 ggctttgatt gatggcacgc gcaatttgat taatgttatt tccaatccgt ctcaattcaa
     2341 atactaactg gtcataagta tccgtgttaa ttgtgacaaa tgacatattg ggattcagca
     2401 acacttttct ggcatagact gaaaaatttt gacagtgact cttgtcgatt cgctcattca
     2461 attgatgtaa ctctgaatct gttagaaata cttttttgag attggtacga taacgataaa
     2521 ccatagtagc ctcctatctc atgtattttt cacgaaaccc acgactgagt ggctgtactt
     2581 gattgacttc cgcaatcaat tcttgaacgc aggtcaataa gattgacacg tgttcttgag
     2641 tcacttggtg attttctctt gcgacaacta gaacttcatg cacatctcga ctaatttgtt
     2701 caaacttttg agattgccaa agggaaaacc aactttcaaa aattctatcc tgataattct
     2761 ttttcaacaa attttgacga agaaattctg agaaactatc cagattttgt tccctcatca
     2821 tttcttttat ctgtttttct tcttgtctcg tgatcctaaa ttgcttacgg attaacttaa
     2881 tttcttgtcc catcctacta tcctttcaac atgatacttg tcttacaatg taaggctgcc
     2941 tcacattgtc agtacgcttc ctaaagacct cactctcttc ttgttcggtc tttgcgagct
     3001 cagatattgt gtccacaata tccccaaaat catatcgcca gctgaccaaa acctttgagt
     3061 tttgatagct gacgataaga taacttggtg gcttcgcccc caaaccccca agaaaaagtc
     3121 aagggttgat tttctaaaac tagatagagt gtaacaagag agagctgaaa aaattatcac
     3181 aggaaaagaa aaagagccat ttggctctcg aaaaatttct gaaatgaaat agcttaacct
     3241 aaaacttcaa aatcatcact accatcggct tcacctgtta gacacgtgaa gcacatgtag
     3301 ctccctacca gtgcactccc tgctacccaa ataggagatc cacagttcat acaccttgcc
     3361 cctccttctt tttcttcaag tactgcacgc aaggtttctt caagctcttt gggattgatg
     3421 tctggattat tattgatagt caattcgaca aattctttga ttgaaataag attcaatact
     3481 ttacctccgt tctaatctat tttttagtcc gtgtccatct aagcacttat catatcttta
     3541 ttgccaataa atccatccaa ttttttggaa aaccatagtg tctcaaatcc acttgttctt
     3601 gattactttc ttccagaagc ttttgtaatt ttttattcca aaaattctta gtttctatgg
     3661 acattgacaa gataagatgt ctcattgcta taaaatagat aaatagtgtc ttgctatcat
     3721 tctctgagtc tgtcactagc aactctctgt cagaatgatg aaaagctggc agtgtatggt
     3781 gtaagcgacc atataatctg ccattgtgtg agcaaatatt cctaagataa cgaagagcgt
     3841 tacaccaaga caataagatt ttagctggaa tgttatcatc cttgtccaag ggaagactaa
     3901 tataggcagc aaccttattt cgatattctg gttgtagggc aacgaggaag gacgctatat
     3961 ttccaaatgt cattaaacga aaaacggtcc aaggtaacac gaccccatat tggttaatct
     4021 gattcttgat tgtggcatca tcttgttttt ccaaaatcaa tcgtgacaaa tgatattttg
     4081 ttttcaaaac aatatccagc ctcttaggat tttcttttcg gtatttagat tgttctgaat
     4141 aatagagagc atcatcttca aaaatataag aaggtttatt gtatccaatc gtcagagcat
     4201 cagctgtact cttcttcaaa aaaacttcga tacgctccaa tatctcttga agaaaatttc
     4261 taaagtagct atcaaataag taaactcttt ttgcttctat gtattttctg tccaccaact
     4321 tcccatattg agagaatgat tggaaatcta tatctcttaa aaagtcaata caatcctgtt
     4381 tataaaaatc atcattccca ttgtatttga aagaccagtt agagttttct ttcatatgga
     4441 catataactg ttcttcagtt aaagccggct caagagaaca ttttaattga gttggtgcta
     4501 atactggtct ataaaccaac ctagttttat cagtaatatc taaatctaac ggaaaatagt
     4561 ccttaaaatt tattaattca aatacattat taggcataaa atatctctcc gcaatatgaa
     4621 aaaaggccac ctagttatac attgctgtac cttcgatgac ttctaatcta actaaattat
     4681 accacaacac ctcctactaa gcaagaaata tttttacttc gtttgattca acgatgacac
     4741 atatttcaaa aaacaggcca aaataattgg tctgttattt gttattattg ctctctcgcc
     4801 taccttgtct aaatctctca atgttttttt ccaactgctc agtattcagt ttatttttcg
     4861 cttcttggat cgatttgtca agactttgtt cctcatcggt tataacgctt tgagataatt
     4921 caacgtttct atcaggctta aaatttgtat caaaaaccac atctaggagt tgttctactt
     4981 tggttagttc agtatctgac atctcagata gtcgatgaat cagtcgttta aattgatcct
     5041 ggttctgttt tttcttttga aaaaatttca ttatcttctc cttcaattat aaaaaggtag
     5101 cccgcatagg actacctgac ttataaatca tcaatggcta ctgaaatagc ctgcaacttt
     5161 ttattttgga ttttcttttc atcaatcaat tgatgaagtt cttcaatttg cttttgacag
     5221 gctgaaatat ccttgttgtt ttgtgcaata gtgtctgcca agtgttgttt atagtcgctt
     5281 gtgatattta ctttcttcgg ctggctttgt ttaacttttg attcgggcgt ctgtacatct
     5341 ttagattctg actccttttg ttgctgttca aaagcagcca catagtctac ttcttcaatt
     5401 ggtttttcat cttgtttatg gaaaagtgct gcaatttttg ctcgttcttc atgggatgat
     5461 gttggtttca catcatctag tggctgatca aaattccatg ttttactcat tctgtatcct
     5521 catttctgta atttgggtgt agtgtggttt ctttaccaaa ggcttgctct agtgcttcat
     5581 gaaatgacaa ctgactagat tgttgccgtt tgataaaggt actgtacata gctgtttgta
     5641 gttggtcacg atagtgttcc aatttctccg tctcacgtga gaccttttct tcttgtctag
     5701 ctactttttc agccagacgt tcaatcacac tcatagggtg tcctccttgt cacattctag
     5761 attatgatag cggacttgat tttgttatca caattcaaaa gtgtgctctc gtttaggtgg
     5821 aggatgatct ctaatgactt ttgtttgggc tgactggata agatctctta aagataattc
     5881 cttttgtcgt ttcacaatat cattccaatc taactttgtt tcaagtcctt gcaatggtgg
     5941 taaatcttga gaaagcggaa gtcctttatc tgacagtttc tgacaaaatt ctcttcctgc
     6001 ctcatcgtta tcaacagcca atgttaatgc atttgaatga gtttggaaga aggttgtcgt
     6061 ctcttgtatt gcctgaagat aatgactaag tctgcttgga tttactgtat ctagaaatgc
     6121 caatttcccc tgttcctctg ctgctagacg caaggtctga taagcaatca cagaaagttt
     6181 taaaccttcc attgaaatca ggcgaacatc ggataattgc ttttggtaaa tctgataata
     6241 actcatcata tcgataactg attcacaaaa aatgagtcgc ttaggattcc caatatcgaa
     6301 actaataccg acatagccat gagatccttt catgattttt ttgagataac ctcgatcgtg
     6361 tttttcttca tttttgacga gaccttgaag gcttgcggcc tgtaaggtcc cgttgtggtc
     6421 atagcttttt aacactaata cgggctccga ttgataagta gcttgagcaa gcaatccttg
     6481 tctaccaaag gtattgatag tctgatcact taggccacgg atgtctttta agtaaatacg
     6541 tgcttgctga aagggttctt catgcaaata atattgaaac ggttgataag tttcttctat
     6601 caacttagct tgttcaaaat ccccagtttc aagataggat acagcctctt tgaaagtaac
     6661 gcctgccact aattgaacaa agtctatcac atccccttgt atatctcttg aaaaccattt
     6721 gaaagtattg gtatccgcaa aaatccgaaa ggaatcatgg tctgggtgtt cataaatgtg
     6781 tcctgataaa cgtctgaagg aataacccag actttcagcc acatttaaaa tggccttttg
     6841 ttttactgct ttaattcgtg tcatcttgtc tccctataaa aaaagcagaa gaatgtctcc
     6901 tgctagttgt tctcacttgt tgtagttcct tggatcgttg gtatgctgga attggctcca
     6961 tctgttgctt ctttcatgtc ctccagtttc ccattccaaa tggtcaactg attaaccagg
     7021 agcttgtcgg aaactttgga gtaggataac ataaccgtct tggtttctgt ctgagtagtt
     7081 cgctgttgtt gctcactcaa atcagaaaca taggtcactt gataggaaac ttccgcaagt
     7141 gcaacattgc tttctgtatt gacaaatata ctggctgatt caaatcggta gtcaagcata
     7201 taatctttat aaacttgatt aatcgcttta ttctgatttg tttcctcttc tgaaaatgcc
     7261 gagtccgtca tgtagggctt gatacgagtg ttattttctc ctagttggac cttggtgaaa
     7321 tattgtgtga gaaattcttt gacaagctca tctgatagga ctgtcgctct ttcctcctgc
     7381 ttttcctttg tcacaagttt attggcttct gctcgtattt ggtgctcagt ttgttttgaa
     7441 acggattgtg agccaatcgt atagccaatc atgaccataa aactgactgc gattaaacct
     7501 cctactccaa tcagaaatcg agctttcact ttatttaaca tggcttactc ctttattagt
     7561 gatagccaaa tcataacaag attatcttgg aaaatttatc acaagaaaaa ggactaccaa
     7621 tcggtaatcc tccgtgttaa actattctat ttctccacca ctttataata aagcttaaaa
     7681 cgagaaatag attcaaagca ataaaaaatc ctgtaaaact ccaaactcca ttagttgcta
     7741 aatcttctga atagaggtat ctctcagtaa agaagaggta aactccatag atttcaataa
     7801 agactaatcc actgatgagt ccgataagaa ataaagcacc tgaaactttc acaatccgat
     7861 aaaggactaa caacatcagt cctattgctg cgataatcaa aaggctttgt agaatttgct
     7921 ccaacatctt acacctcttt ctaggctaat tgcttgcgat agtagtcagc ctgtctcttg
     7981 tctaaatcat caagttgggc aaccaaatca aggtattctg ccttcgttac ctcatctaag
     8041 cttggaaaat cattctcacg agttgtgatg atgagttcca gctgtccagt aatttcacgc
     8101 tttgaaaagc tataatcaag agtttcatct tcatactgtt cctttaaagt ttggtagttt
     8161 gccctatctt ctgaactcgt aaagccttgt gacaaccatt cttcaagttg ataacgcatt
     8221 tcttctactg ttttggtcat ggtctgttct ccttttgtga tttcttgact tcattttacc
     8281 gcgttcaaaa atatttgtca gccttttttc ttatatctcg agtgctagtt gttgcttctt
     8341 ttgggctgtt gtatcttcac taaacttggc caaagctgca tctatctctt caatctctgc
     8401 ttctttttca accaagggag ccaagacatc atacttagcc tttacaagct gatattcctc
     8461 ttccttggga aagattttct caacttcaac tttggctact tgtagcttat cttttaaatc
     8521 ctttaccagc tcttgcgtct tttcttggtc atccaaaata tggtcaatgg cattactaat
     8581 tcgttgaatg gttcccacgt ctgatttcaa atcaagggcg acagtatact gattatctcc
     8641 tacaatcatt aaagagacag tctctggcaa gggctcacta ggacctcgtg tagtcatttt
     8701 taagtcaaat cctctaaagc tggcaagtgt tctgacttcc ttggtctctg agcggttata
     8761 ggtaatgagt tttcgcaggt agtcccctgc ttctgtagga ttatccattt tctgattgtc
     8821 aaatcgcatg acaaaatctt gcgactttgt tgccaaagat tgggcaatat ctttatcata
     8881 ttgactcaac cgtttttcca taatagggag gtgcttctcg caataggaaa ttgcatggcg
     8941 atactcgtct ttggagcgat taaaggcgcg tttttgattt tctaaaactg tcagttcatt
     9001 ttccaactcc attttgagct taaggtaggg attaccagtg gctaaagcct taaagtcaga
     9061 agcagtcatg gtttgttcat caatgtcttc agctgatctc acaggatctt ttgaggtcat
     9121 tatctgcgta atgtatttga gcttattctc ctgtgtctgc cagaggtaat tgtcgaagct
     9181 ccctttagta atatagtgat aaatatctac ctcctggtgc atgtttcctt gtcgaattag
     9241 tcgtccattt cgctggacaa tgtctgaggg acgccacgga acatctaagt ggtggacagc
     9301 tttcatgcgt gattgcacgt ttagacccgt tccacctttt tcagtcgaag ccatgagaat
     9361 ccgtacttct ccgctattga ccttacgtga cagagagttt ttcttctcat cagtattggc
     9421 atcatggaca aaggcaattt cttcttttgg aatccctcga tcaaccagca aagctttcag
     9481 ttcattgtag acatcaaagc cttcttcctt acttttaggt gttccaatat cagtgaaaat
     9541 catctgagtg gctttgtatt cagctccttc acggtaaatc cgctcgacat tatcgactac
     9601 ttgaaggatt ttctgattat ccgataagga gtaagcaagg tcaatcaacc gcatatcaat
     9661 ggctagtttt ctggcttctc ctgtgatttt aagcatgtta tctctacttg gatcaacact
     9721 acctgacttg atagcgtccg aacgctctac cagctcttct aaatagtatt tctgagcttg
     9781 cgttaactcg ctttccaccg caataatctt agcttcaggt acaggtaagt cgagcatatc
     9841 tgaggtctga atatcggcag tttccttgta gattcgcatg agttcaggaa ggttgacaaa
     9901 tttcttgaac cgtttcttgg gttggtactt atctcctgtc ggggctagtt ccatagagtt
     9961 ttcaatattc ccaaaagccc caacccatga atcaaaattg gatacctggt atcgctctaa
    10021 aacatcaggt tgaatgtaat tcatcatggt gaaaagttca ctaatagagt tagaaactgg
    10081 tgttcctgtc gcaaaaacga catttctatc tccatgctct gcctgtacct gtctcacctt
    10141 catctccata tctacgttct tttttgaagt ggtattggtg attccagcta cattcccaag
    10201 tccagtgatt ggacggatat tcttgaagtg atgagcctca tccacaaaaa gaaaatcaat
    10261 gccaaggttt tcaaattcga taaaggtatc tcgctctagt ttttggagtt cttctagttg
    10321 gtgttctaat cccttaattg aacgctctgc ttccttcacc gtgtaatcac tgtcacttcc
    10381 tagtttaatt tctctgagtt gctcaagttt gtcattgata taggtgacct gtttctcacg
    10441 actcattgga attttttcaa attgtgaatc cccaatgaca atggtatcat agtcccctgt
    10501 aataatccga gacacaaact gcttacgttt ggctttggca aagtctttct tagtagtcac
    10561 atagactttc ttggtaggga aaaatttcat gatttcttga ccaaactggg cagtcaaact
    10621 agaaggaacc acatagagag gtttatgcac catccctaat tctttcaact tgaaaccagc
    10681 tccaagcatg gtcaaagttt ttccagaccc tacctcgtgg gctagtagag cacgtttttc
    10741 ctctacaatt cgttgaatgg cattcttttg gtgaggacgt aacgagatat tctgggcaag
    10801 tccatcaatg gttaaatgac taccatcata ggactttgat actgtacgat tgtagagcct
    10861 attataggtg tcttcaatca tttgttggac ttctggatac tttgctacaa aaccttgaaa
    10921 gagttcttgt aggtgtgttt ccttggcacg taggaccgtt gttttctcca catctgtcac
    10981 attctttttc ttatcccctt cgacaacttg ttttgtgatc gttggttgat tggaattcag
    11041 gagattttcg aagatttttc gaccactatc atagcgtgaa gcagggacac ctaaactcct
    11101 atccgttgcg ttggaatagg tgtaggcaaa cttagattgg taagtgataa ccccgtcaat
    11161 gggactgact tcaaggactg ttgctacttc ttggtctgac agttcatagg ctttccccat
    11221 aaaggtttct tgggcaaatt ttccgtaaac agacaaagga atccagcgtg aaccgattcg
    11281 ataatcaatg tctgccaaag taatacgtgc tggtttaata gcttctagaa gtcctgcata
    11341 atgtgaccag ttaaagtcct gattgtcttg tttgacgaat aggtccacca cttctgactt
    11401 ggtaacgaca tcccctgaca gaaagtcttg gcgagaaaca taggtcaatt ctccattcaa
    11461 atacttctca ggatcaggca taatgaggtc acctaactcc tcaatcaagg tcatctgcga
    11521 ttcaacctga tagatagaca tcatataagc gaaatcaaca cctcgtccgt cagccaagct
    11581 cgaatttaag gcatcaaggg cagtatgcac ctttttaacc tctttttcag gacgcactag
    11641 agccttctca aaggcaaggg atttagtata gataacagac tttccacttg gatccagact
    11701 ttcatcttcc aaactagcaa gaagcgaata cttatcatca ctatcaaaaa gattgcggtt
    11761 cacagcacta ttcaaatacc catagcgttt gacaaagcta tcataggtac gattgagttt
    11821 gcctaacaaa tggttaaagg tccccttatc gtagtcataa tggcgttgaa tggcaatgac
    11881 ctcttggtaa gcattgcgaa tatcgaccat tcctttgatt cgtgccactt ctttatcaga
    11941 caaaggagct tcatagaaaa ctgtcttttt ataatacccc ttaaattgtc cgcgttttgc
    12001 tgcatcatcg gtcacataga catccagagc tgtgctatct gtaacttcta agcttttaaa
    12061 tctatcaatc tgtttttggg aatgtttggt gtcccatgct ttgaagttac cctcttcatc
    12121 gacatagtaa ctgatttctt ccgtcttggt tccgactcga atgcctttat tatctcgata
    12181 gtagatcata gtaccctggt aaccaaaact gtactgacct agattctccc tcatttcagc
    12241 tggaatggag gtatcaatga cttgtttggt caacacatct gggttaatga tgacctcatt
    12301 tctatcaatc tctcttgggg cttttacttg atgtagagct gcttcaacac ttgcaatcaa
    12361 gttatcacta gtccccttaa cagaaagtgt tcctccgtta aaatttctga cctcgtaggt
    12421 tcctagcact tggctattgt attccctatc aaaataagga ttgagccaaa tgcgactatc
    12481 cttttcataa cgaatggaac ctgaaaaggc taagtcgtct gccacatatc ccttgtctaa
    12541 gtgtttctgg aagaataaca tatccgttgt gacactcgtt cccgcaatgg ctttaaaggc
    12601 agagtcaggc agtcgaaccc caccaagaaa ttcagttgtc tcacgaatat cttgtaagat
    12661 gttttctgtt cgcttatcca tggttcctgt tgaagagata atcgctactt gtccaccatc
    12721 atggaccaaa tcaagtgact ttttgacaaa gtaatcatga atcatgtaag gcctatcgta
    12781 cctgttatcc gcaattcgta tattggcaaa gggcacattt gaaatcacca aatcaaaact
    12841 attgtcgtta aaagccaccg tctcaaagcc cttaatttca atgtgactat ttggatgaag
    12901 gtgtttggca atagctcctg taatggtatc taattccaca ccatataact cactcttttc
    12961 tcttaagtgt ttgggcatag ccgcaaaaaa attccctgtt cccatggaag gatctaggat
    13021 tttgccacct gtaaagccat ctctttccaa cttatcccac atctgacgga tcagggcagg
    13081 ggctgtataa taggctgtca gagaggactg tttcatatcc gaatactctt tatctgtgac
    13141 taggcttttc agttcttctc gttccttaga aaattttgga ttatagtcat caaagaaatc
    13201 attggcaagt ccaccccagc ccacatactt ggcaaggagt tcttgttcac ttgatgaagc
    13261 attgcggtgc tctacttcta gattttttac caaacgaatg gccgcaatgt ttgtctcaac
    13321 cttatctcta gcagtctttg gataaaagtc cgtcatatct tctggaaaat aaaagtccgt
    13381 tactggaatc tctggaattg tttcgactac tacctcttca ggaatttgac tatctgtttc
    13441 ttcaagatca gtatcgtttt gacctttttc agaaccatcg ggttccaata gtccaatact
    13501 ctgaactggc tcctcttcca gaaatgaaaa aagatttagt tcttggtccg cttcttctaa
    13561 ctctgtttgt ggttcagcct ttggctgatg aagtgcctga ctgacttctt cccaggtcct
    13621 cacataaaga actggatttt gttcaatgat atccgaaaaa tcattgacta actcaatccg
    13681 aatcaaacca ttcaatctag catcgctgac cgacacgacc tcaaagtcct gtcccttata
    13741 ggaaaccaat gaccccagag gataagtgtc caatactctc tggactagtg gattttccgc
    13801 taactcttca tcaaccacta ctttcgactc agctttctct agcttgcttt tccaatctct
    13861 gaaggttaaa tctggctgat tgcccttatc catttcaaat tgttccgcat cttctctgct
    13921 gagttcttgg tgtaaaaagg cgtaggcaac ttgtcgtagc tcttcaaggg aaagctggct
    13981 accaaagaaa aattcaacct tttcatgact caatcccatt tggagtagtt ctgtcgcaag
    14041 ggctagttga gttaccgagg ctttgggata gccacctagt aaagcaaggt ccgaattttt
    14101 caaacgaaaa cgacctgccg catccaataa aataccgact tggtctggtt caaactgaga
    14161 taaatcaatc cccacctgag tcaatttttc ttgattttct atcctaatgg cttgtccaat
    14221 tttttctaat tccttttctt cgactgtggt cagcgttcgt ttcagctcat tgggactgcc
    14281 atcagcttct agataagtaa gtaattcctc gccctcaaag attggtgtca tttccatctc
    14341 tgtgtcaaaa tcacctcgtc taaaacttgg gactttggaa cgttcatttc gaatttggtc
    14401 aaaatatgtt agtatctcaa atttacgtcg taaagataac tcttcatagg caggcagatg
    14461 actggttttt cctgtttgaa cattcagttg agacaaatct acatccaaac tagcaatgat
    14521 gagagagcca tcttctctaa atgatattgc ttgattacta ctcactttgt gctcatcaac
    14581 agtttcttca ttttctagaa cagtttcatc agctcttgtt tcaagctcag gctcgtaagt
    14641 caagagaaac tgttcaatat ctcggctaat ccgatccgct aaattattag ccacacgata
    14701 cacattgacc aaattagctc ccctactctt ttgtaataga gaatctggtg aaatagtttg
    14761 gtagtgtcca tttgagtcta atagttgaaa acgagtggcc agattgaaca aggccacttc
    14821 aatcaccaag tctttttcag acggcgatag tttgtcgagt ttttggagac cagtttggcc
    14881 gaaaacttgt gtataggtca atagatcatg agcagtatca taaggactag cctggacaaa
    14941 agctgaaaca tctgtctcaa agtgaagtac ctgaacagat cttttgattc cctgcctatt
    15001 ggtcataaac tgacgaataa gactatccca ctcctcatca aaatgctctg cttggtaata
    15061 taaaaacgcc tcaagcaagg ctctatcacg aggaatggtg gctctcatca tttgtagtaa
    15121 gacttcttga ttcattttcc ctcccatttt aaaaaggctg agagtgtttc tcagcccttt
    15181 gtgttaatct aggaccaagg ctcgttggtc actttcttgt ggaatacctt ccattacagt
    15241 tgccacatag tgttgtaaga aatgactttt ctggtctagt aaatcttttt gcaaggcaag
    15301 gtgaaccaaa tctccaaaat aatcctgact ggaaatagcc aattcctgtt gaatcatagc
    15361 ctgtaaggtt tcaaagctaa gtggtgaata atcgtcacta tccaaaacct catactgttc
    15421 caaggtatct gagagactat ttgaggacat taaatccata ataaaactag aaccttcacc
    15481 tgttcggtac aacttttcca gaatgtcagt catatctacc tgtacttcat cctgataact
    15541 atcaacttta actcgtagct catcactaat caaggatagg tcatcttcat ccatataatc
    15601 ttgataaacc tgattgagga ttgttctatc agaaatactt aattccaaag agagaaaggc
    15661 tttgataaac tcttggtaat cgaccttctc catttcagac aaagcctctt tcatggtgtc
    15721 aaagttccaa gccatcacac aactcctttt gtgggactag tggtgaatgt ccagattgta
    15781 gctcttctaa atcagcttga ccatcaccat ctgtgtcaac agactgcgga ttggttccca
    15841 aagctagttc ctgagcatct gtcaaaccat cttggtctga atccttttca taaatagttt
    15901 ttggattcat ctacttctcc tcctttttct ttagtccata agctgtacca agtagaatac
    15961 cggctccaat caagcccaaa agggtttcct gttcccctgt atttggcaaa acactagctg
    16021 gaacaggtgg ttctatagtc tcaattggtg gttgaggtgg tgtgggttga tttggacttg
    16081 gttcttcagg ttgaggtgta tgtgttacaa ctgtatttga actgatgaca tagccattta
    16141 ctgtatgaag ataggtattc tccacctgac cagccgcaat ccgtttcatt tgaaggtaaa
    16201 catctgcctg aaaagctgaa tcatcagaga tagtctctaa gaaggattta tcaaatgaaa
    16261 ttaacacgag gccattttct gtatctacct gttgcaaggt atatttcgta acctccgttc
    16321 cttcttttaa gacagaaccg tctttgagga tgacatccgt catcagatag ctacgataaa
    16381 caccattata ctcatcatgc ttttcatcat agttatcttc aaaaccatat tcaaataaat
    16441 cagtcgcacg attgcttgga atcaatgctc caaccaagcg atagttaaag gtttgatgca
    16501 aggccacttc tttcccgtca aggctggcat ctttatgaga caagtcaatc accacatctt
    16561 tttgtgggtc taattttgga acattattaa ccactgtttc cgtgacatag gccaagccaa
    16621 aatcaatctg ataggctgta ttttcatact gaccacctgt tttggtcaac tcatttttta
    16681 ccgtcatcgg aagcgtgaca actaaggttt gaccagtctt cacataggtc tcataaaagg
    16741 ttttgggatc atcgctacta aggacctgaa tggctccttt aggtgtaaac tgacgtttag
    16801 ccatggcatc ttggacgact tccggagctt ctgacaaact agcgtaggtg ctgacagaga
    16861 taccagatac acgattgcca gccttatcca aaacttgaat gccatcagga tttagggtaa
    16921 gggcttcttc tgggtaatcg tctaccatgt aaaatccctt ggcaagaaca tcatccgtca
    16981 cgaccatgtc cttgtattga ctgtaatcca agacaaattt gtaataattg accgtattcg
    17041 gaagaacagt ctttccatca attgaaatac cttcttgatt ggtattagac ttatgtggag
    17101 ttactttagg gacaaaattg gtcaccgtgt tggtttcata ggcttgccca aagtccacct
    17161 gataagccac gttttcataa gacttccctg aattaagcat ggtttccaaa accgtcatcg
    17221 gagtgacaat ggtaatattc tcccccttgg tcacataaga ttcaaaaaag gcttgtgggt
    17281 cctcaggcat aaaaacttga aaagctcctt taggctgaat tttttgtttc gaaagggctg
    17341 cttgtagcgt tttaggagct tctgataatt gagaataagc cttcaccgtg attcctgaaa
    17401 ctgttttgcc atcagatgtg acaaactgaa tacctgcttc atccggcaat aaagcttctt
    17461 ctggataatc atccacaaag taaaaacctt gtgcaatctg agagttgtct gctttaatcc
    17521 ctcggtattg gtccaagtcc catgagagag tatagtgatt ttgagttccc actagcatgg
    17581 gcttcccatt gatgtccact ttgtctttat tgaggttctg ttttttgggt tctggagaaa
    17641 caagggtgtt ggtcacttcc ttggtttcat agccatttcc aaaatcaact tgataagcct
    17701 tgtttgtata agtcttagtt tgaccataga gactatcttt caccgtcatt ttggtcaaaa
    17761 gagctaaaga aattcctgtt tgaacatact ggtcataaaa ggcttggttg tcatccggca
    17821 aaaagacttg aaaggcacct gtcggtgtaa tcttagcacg agctaattta tcttgaaggt
    17881 ctttaggagc ttcatttagt gaagcatagt ttttagccgt tattcctgat accttttgac
    17941 cgtcaagggt tgtaacagcc gtgccatttt ccaccacatc gagcacttcc tctgggtaat
    18001 cgtccacaaa gaagaagcct cgtgcaattg tctctttagc agaacgatct cccttatact
    18061 ggtccaaatc ccaaatcaat cggtagtggt tggttgtgcc aagggctacg accgtgtcat
    18121 taatgaggac accgtccgca ttttcgttgt ttttatctgg tgtaatgagt gtggttgtct
    18181 ccccatcacc tggtgtacga accgttacaa catttgaagt gactgtgtaa gcattggttg
    18241 tacccttgtt caaaaggagt ttgtaactat tggaataggt tgccccatca ttttgaacag
    18301 aaccatagag ttttggagcg ttcagttgat aaaccttggt taaatcttta tttacctcct
    18361 gcaacaagtt ttcctttgcg gtcaaggtca caaaattctt agtctcatca aagctaagga
    18421 catagtttcc attctctttt tgtgttgttt ccttatcaaa taggtaacca gcaggcaagt
    18481 agtcctcaaa aatgagacta gtcgtttggg cacgattggg cgatatagca tcaactgtta
    18541 agggataaat cacagttgaa tcttttgcga cagttttctc atgaagatta gcttggtcac
    18601 tattgaccac ttctttcata atctctggag ttgtcgtcaa acggtacgca tgataatgga
    18661 ctgtcggtac ttgtggtggc gttggaagtt cttttgggat aggtttgaca ggtaaggtta
    18721 ctttggtcaa ggacagacta ggctgcacta cttcttccaa aggctttggc gtgaaggtca
    18781 caggcttttc tggtgtaaat gttttaggag aaaagacatc tggtgttacc gtaataggtt
    18841 ctggaatggg ttcaagttcc accgttacat gaggtttggg actatacggt gttactgtac
    18901 gtgcaactgg tagggtattt aaggcgaacc agtatgacaa gccaacattc tgtggcatat
    18961 cgccttggcc aaaggttact gtgtaggtat tacctgatgt aactgttgag acaatagctc
    19021 ctttataagc ataacgactt gatgtggtat cccattcctc aggtaaattc aaatcacttg
    19081 cacggttgga acccaaagaa cgtgccagac cttcattagt cacttgaacg gtagaaccat
    19141 taatcggcac aaatttccca gatgaatctt tgacatattc tagaccaatg tcattatgat
    19201 tgagggaaga atgcgtgaag acacctggtt tttctttgga gaaggtaact tgtgaaccgt
    19261 cttccaagaa atacttggca actacacgaa actccatctt gtctgttcgc caatcaccgt
    19321 ttccgtcatt tcgataggca ataaagccct ctgtgggatc gtttggtaca accaatttca
    19381 cagcatcggt tccagctggt gatacaaggt tggtaatatc gtaagtcact cgactaatct
    19441 ttttaccatc aaatcgtgca ttttgaagat tttgatagtt aaaactaagg gtctcacctg
    19501 ttttgaagct atcatagaca aagaatcctg ttgaatccaa tattcttgag tagccaccca
    19561 gcatggtatc gccagttgaa atgatttgat taggatttcg ggtaattgct ccatgttgtg
    19621 cttgtggctc accgttattg agattgaggg cttgagcaag ggcttcagaa atataacctt
    19681 cttcaccttt tgaaatctcg gctaagtcac gttgatagcg ttccaattct ttggtattat
    19741 aggcatcaat cgcttcattc tcttttctga ctgcggcttc tttttcttta ttgcgttttg
    19801 taatagcttc aatctcagct gctcgatctg aaactaattg ttgtttctcc tgattcgctt
    19861 gatctactgc ggcttgacct gcacggtttt cagcatcaac agctgcttga ccagcctgat
    19921 tacgcctttc aatggcttca ttatctgcct ttgccttagc aagtccagct tcattttctt
    19981 tttgaatggc ctgatttttc gcaacaatat catctgcctt agttttcttt gttagataat
    20041 ccgctacagc ttgttcgtta gttgattgaa tggtttcaac agtcttgcca tagtttgtat
    20101 agtcaaggac agatgtccca tttcctgctg aaactacttg ttcaattaat gtcacatcag
    20161 catctgcata ctgggacttt aggtcattga ctttggtatc aacccaagta tttgtctctt
    20221 taccagtttg gttggcccct tcgtaggcct gtgacagcac cttattttcc tgttcaatgc
    20281 gtgctttatt tgattcgtat gtcgctttgt cagctttgta ggtttcagta acttcattga
    20341 tagccacaac ttggttttgg gcatctgctt ctgcttttga aatttgttgg ctggtctctg
    20401 tcgcagatct tgtatttcct aaatccattg gactatcttc aaccgtagaa acaccttcag
    20461 cctttgcctc ttcaactgct tgtgttaccg tatcatgtgg tacggtgact gcaattgtac
    20521 cgttagattg tccagttgac cctaaacttt cagtttgttc agatacaggg tttggctgtg
    20581 cttctggtaa atttgtggct ggattctccg ttcgttgaat ggtggtgtca actgatgatg
    20641 agacttcatc agcatgtgca accgttcctc cccaagcaac aacagccgtc accatggttc
    20701 caagggcaac ggaacataga gtgcgatatt ttttactctt gcgaaagacg tgtttctcgc
    20761 ctttttcctg attgacaaga aagtgatgat tacatgtttt ggtcataaat agtccttctt
    20821 ttcttttgat aagtagcaac aaactgtcac tctttattag atacgagggc gttaagcgag
    20881 cacgacaaaa ataggagttt tgacgaagaa ctttccgttc taggagaaac tctctttttt
    20941 gtacagctcg tagcccaagt tcaataccat cataaaaaag aaggcttgat tttgttatca
    21001 caatacattg ttgtaaaaga aaacgttgct tttgcactac aaatattgta aaattgtagt
    21061 gcaaaagcaa cattaaaagg agtaagcatg tcaaaaaaag agattctact tgaatttata
    21121 gaaaaccaca atggcattat cacctataaa gactgtaaag ccttaaagat tcctacaata
    21181 tatttgacaa gactagaaaa agaagggatt atttaccgcg tcgaaaaagg aattttccta
    21241 acccagaatg gagactacga cgaatactac ttctttcagt accgttatcc caaggctgtt
    21301 ttctcttata tctcagcgct ttacctgcag caatttacag atgaaattcc tcaatatttt
    21361 gacgtaacca ttcctagagg ctaccgtttt aatactcctc cagcaaatct gaacattcat
    21421 tccgtttcta aggaatatag cgaactagga attacacttg taaaaacccc tatgggaaac
    21481 gaagtaagag tgtatgattt tgaacgcatt atctgtgatt ttgtcattca tcgagaaaaa
    21541 atagatactg agctttttgt caaaacactt caacattacg gaaactattc taaaaaaaat
    21601 cttacaaaac tctatgaata tgcgacaaaa atgaacacct tggacaaggt caaacaaact
    21661 ctggaggtcc tagtatgaat aaagctaagc taacagcact ctgtcataaa atatcaaaga
    21721 atactggttt aacctttaat tccgtcatga cctattactt cctagaagtc attttgaaaa
    21781 aattaagtca gagtacctac tcaaatcact atatcttcaa aggggggttt ctgctgtcaa
    21841 atgttatcgg agttgaatct cgtagcacgg ttgatattga ttttttgttc catcaaatga
    21901 cactctcaga agatactgtg aagcagcaac tcaaggaaat tttagcagat tccgaagaag
    21961 gtatatcttt tgtgattcaa tcaatcacag ctattaaaga aagtgatgac tatggtggct
    22021 atcgagcaac aatttcgtgc caacttgaga atattaaaca agttatccat ttggatattg
    22081 cgacaggtga tgttgtaact cctcagccga ttacatacga ctataaagct atttttgatg
    22141 aagagaattt tccaatcatt gcttatacaa ttgaaacaat tctagctgaa aaacttcaaa
    22201 ccatctattc acgtaacttc ttgaacagta gaagcaaaga tttttacgat gtttatattc
    22261 tttcaaaact gaaaaaagaa gacattgact tcattcagtt gaaaaatgcc tgtcagagaa
    22321 cattttcata tcgcgaaaca gaactcgatt ttgtaaagat tattgaacta ctcgagaggt
    22381 tcaaatctga ccctattcag aataaacaat ggcaaaatta ttcaaaaaaa tatagctata
    22441 caaaagggat ttcacttgca gatgttcttg atgagatgat tcgtcttata acagtactca
    22501 tttcta
//
LOCUS       DASGBY010000018        22406 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.018, whole genome shotgun sequence.
ACCESSION   DASGBY010000018 DASGBY010000000
VERSION     DASGBY010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22406
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.018"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            60..242
                     /locus_tag="U1396_000549"
     CDS             60..242
                     /locus_tag="U1396_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HEM5341759.1"
                     /translation="MPFVRIDLFEGRTEEQKIALAREVTEVVSRNTNAPKEAIHVFIN
                     DMPEGTYYPQGEMKRK"
     gene            complement(292..2124)
                     /gene="lepA"
                     /locus_tag="U1396_000550"
     CDS             complement(292..2124)
                     /gene="lepA"
                     /locus_tag="U1396_000550"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017645216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEM5341760.1"
                     /translation="MNLEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSRE
                     MQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPIINKIDLPAADPERVRQEIEDVI
                     GLDASEAVPTSAKAGIGIEEILEQIVEKVPAPTGDVEAPLQALIFDSVYDPYRGVILQ
                     VRIVNGVVKPGDTIQMMSNGKTFDVTEVGIFTPKAIGRDYLATGDVGYIAASIKTVAD
                     TRVGDTVTLAKNPASEPLAGYKQMNPMVFAGIYPIDSNKYNDLREALEKLQLNDASLQ
                     FEPETSQALGFGFRCGFLGLLHMDVIQERIEREFNIDLIMTAPSVVYHVNMTDGEMID
                     VANPSEFPDPTKIATIEEPYVKAQIMVPQEYVGAVMELAQRKRGDFVTMDYIDDNRVN
                     VIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRSSKLVKMDILLNGDKVDALSFI
                     VHKEFAYERGKIIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDEDDKK"
     gene            complement(2220..2633)
                     /gene="ndk"
                     /locus_tag="U1396_000551"
     CDS             complement(2220..2633)
                     /gene="ndk"
                     /locus_tag="U1396_000551"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEM5341761.1"
                     /translation="MERTFFIIKPDALKRGLAGQILSRIERRGFQIRDLKMVTATEEL
                     ISQHYDHLTDKPFFPQLVQYMTSGPMIAGIIEGPEVIKSWRDMMGATNPVNALPGTIR
                     GDFATAPVEGIVANVVHGSDSAEAAEREIGLWLGK"
     gene            complement(2656..3243)
                     /locus_tag="U1396_000552"
     CDS             complement(2656..3243)
                     /locus_tag="U1396_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002915299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEM5341762.1"
                     /translation="MEINTHNAEILLSAVSKAQYPGDDIPEIALAGRSNVGKSSFINT
                     LLGRKNLARTSGKPGKTQQLNFYNIDDKIRFVDVPGYGYAKVSKTERAKWGKMIEEYL
                     TTRENLRVVVSLVDMRHEPSADDVQMYDFLKYYEIPVIIVATKADKIPQGKWNKHESM
                     IKKKLDFDKNDQFVIFSSETRHGYDQAWDAILSNI"
     gene            complement(3299..4525)
                     /gene="clpX"
                     /locus_tag="U1396_000553"
     CDS             complement(3299..4525)
                     /gene="clpX"
                     /locus_tag="U1396_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEM5341763.1"
                     /translation="MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEI
                     IREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINFQDSRD
                     ENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
                     LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVA
                     SVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDE
                     KESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTL
                     LSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRV
                     TKAAVDGKEKPLLETA"
     gene            complement(4723..5235)
                     /locus_tag="U1396_000554"
     CDS             complement(4723..5235)
                     /locus_tag="U1396_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM5341764.1"
                     /translation="MTKKIVAIWAQDENGLIGKGDRLPWSLPADLAHFKETTIGHTMV
                     MGRITFDGMGKRALPNRHTIVLTTDKTYQLESERITILHSVEDVLDWYNKQEQTLFVI
                     GGGQIFTAFAPYIETLIVTDIHGQFNGDVYFPKAFPMEKFQLQSANLRPKDEKNPYDF
                     TIKTYERRDG"
     gene            complement(5573..6412)
                     /locus_tag="U1396_000555"
     CDS             complement(5573..6412)
                     /locus_tag="U1396_000555"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015632084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEM5341765.1"
                     /translation="MTKADIIFKENIRKIMEEGVFSENARPRYKDGNVANSKYVTGAF
                     AEYDLSKGEFPITTLRPIPIKSAIKEILWIYQDQTNDLSVLQEKYGVQYWNDWEVEGT
                     GTIGERYGAIVKKHDIISKILKQLEENPWNRRNVISLWDYEAFDQSAGLLPCAFQTMF
                     DVRRVDGEIYLDATLTQRSNDMLVAHHINAMQYVALQMMIAKHFGWKVGKFFYFINNL
                     HIYDNQFEQAEELLRRTPSEVEPRLVLNVPDGTNFFDIRAEDFELVDYNPVKPQLKFD
                     LAI"
     gene            complement(6465..6767)
                     /locus_tag="U1396_000556"
     CDS             complement(6465..6767)
                     /locus_tag="U1396_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341766.1"
                     /translation="MNLTLLKRLNLVLYGIAIFLFVMLFLPIGQWFDIVNVNFKLTFF
                     IIPFFGLASLPTAIYTKNVRQILLSAILVALYFILFSLITALSGLFHLNFYSFFFK"
     gene            complement(6779..7057)
                     /locus_tag="U1396_000557"
     CDS             complement(6779..7057)
                     /locus_tag="U1396_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341767.1"
                     /translation="MKQVNMSKIINYLTILGLLILLSAFFLDNWIRDWFFPSSWGNVA
                     TMLILPLLGTLILILSIYYKKLWTGLISIFLMISFPLIFGIGYFIFGP"
     gene            complement(7184..8143)
                     /locus_tag="U1396_000558"
     CDS             complement(7184..8143)
                     /locus_tag="U1396_000558"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEM5341768.1"
                     /translation="MSKKIIGIDLGGTSVKLAILTTEGEIQEKWSIKTNILDDGSHIV
                     PDIIDSIQHRFETHGLTKDNFLGIGMGSPGVVDSEAGTVIGAYNLNWKTLQLVKDQFE
                     SALGLPFFIDNDANVAALGEQWVGAGNNNPNVVFMTLGTGVGGGVIAAGNLIRGVKGA
                     GGELGHITVDFDEPFACTCGKKGCLETVASATGIVNLSRRYADQYAGDAKLKQMIDDG
                     QDVTAKDVFDLAKEGDDLALIVYRHFSEYLGVACANIAAVLNPAYIVLGGGVSAAGEL
                     LLDGVRKVFAENSFPQIKESTQIVLATRGNDAGVLGAASLVLK"
     gene            complement(8239..8574)
                     /locus_tag="U1396_000559"
     CDS             complement(8239..8574)
                     /locus_tag="U1396_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341769.1"
                     /translation="MKVLVMSYMVIYLLVTLGAALFSYLKTKKMNTLRLILTILSMIL
                     LTSTLYFYSQSYHDLQMVGFALGFTFISTLFLYNGTKEGSNFTTVMLFSIGRFILHIQ
                     FLILLYLFR"
     gene            complement(8575..10443)
                     /locus_tag="U1396_000560"
     CDS             complement(8575..10443)
                     /locus_tag="U1396_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5341770.1"
                     /translation="MSDFIVEHLTKSVGDKTVFADLSFIIHQGDRIGIIGVNGTGKTT
                     LLDVLSGRIGFDGDVSPFRTKNAYKIAYLTQEPDFDESKTVLDTVLSSDLRETQLIRE
                     YELLLSHYDEASQARLEKVMAEMDSLNAWEIESQVKTVLSKLGLTDLNKTVVELSGGL
                     RRRVQLAQVLLGNADLLLLDEPTNHLDIDTIEWLTTFLKNTKKSVLFITHDRYFLDNV
                     ATRIFELDRASLTEYQGNYQDYVRLKAEQDERDAALRHKKEQLYKQELAWMRRQPQAR
                     ATKQQARINRFHDLKGDLANKIDDSELEINFETSRIGKKVINFENVSFSYPDKPILAD
                     FNLLIQNKDRIGIVGDNGKGKSTLLNLIAGDLQADSGKVDIGETIRIGYFSQTIKGLD
                     ESKRVINFLQEVAEEAKTTSGMVSIAELLEQFLFPRNTHGTLIEKLSGGEKKRLYLLK
                     ILLQRPNVLLLDEPTNDLDIATLTVLEHFLQSFTGPVITVSHDRYFLDKVANKILAFE
                     DSGIETFFGNYTDYLDEKAFLASSSAISLEKPKEKTEKIKENKKRMSYFEKQEWATIE
                     EDIAGLEERIAAIEAEMLTCGSDFTKLSDLQKELDEKNDLLLEKYERYEYLSELEG"
     gene            complement(10436..11647)
                     /locus_tag="U1396_000561"
     CDS             complement(10436..11647)
                     /locus_tag="U1396_000561"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEM5341771.1"
                     /translation="MKLNNLPSEFQEALPILEKIKAAGYEAYFVGGSVRDAILGRPIH
                     DVDIATSSYPQETKQIFSRTIDVGIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQ
                     VSFVRSLEEDLKRRDFTVNAFALDEEAQIIDLFEGMTDLENRTLRAVGIPAERFNEDA
                     LRIMRGFRFAATLDFEIEPTTFEAMVKTAPLLEKISVERSFIEFDKLLMADFWRKGLR
                     AMIDSKAYNFLPDLAGKSDELETMLTSLTEEFRFSTSEQAWAMLFVCLGIDSIKSFLK
                     KWKTSNDFQRSVVKLVEIYQLRQAGPVTKQICFKYGKEFLYLVEELRQAQGLVTDFVA
                     IDKIDQALTIHDKHEIVVNGGHLMKAFDLKPGPVLGELLKEVEFQIVEGQLENEEQAI
                     MTFVKGILENE"
     gene            complement(11644..12411)
                     /locus_tag="U1396_000562"
     CDS             complement(11644..12411)
                     /locus_tag="U1396_000562"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002262893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEM5341772.1"
                     /translation="MTIKVIIAGFKGKMGSTAVEMVKGDAALSLAALVDPFATETEVD
                     GVPVFKTKEEVASLEADVWVDFTTPKFAYENTRFALENGFAPVVGTTGFTPEEIEELT
                     ALSAEKGLGGLIAPNFAIGAILLMQFAAQAAKYFPNLEIIELHHDKKKDAPSGTAVKT
                     AELISQVRQSQTQGAADEEELIAGARGAAFDGFRIHSVRLPGLVAHQEVIFGAQGEGL
                     TIRHDSYDRISFMGGVNLGIKEVVKRSQLVYGLEHLL"
     gene            complement(12420..13271)
                     /locus_tag="U1396_000563"
     CDS             complement(12420..13271)
                     /locus_tag="U1396_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5341773.1"
                     /translation="MKLAVITDSSAILNVQSIERDDLFVLSIPVSIDGENYIEGQNLT
                     VEEFYQKMASSKELPKTSQPSLMELEEILAKLTEKGYTHALGLFLSSGISGFYQNIQY
                     LADEFEGLTVAFPDTKITSAPLGMMVENVLKWADAGLSFEEITGKLDQEIGKTTAFIM
                     VDDLNHLVKGGRLSNGAALLGNLLSIKPILYFTGEGKIEVYEKVRTEKKAIKRLLEIL
                     QEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIVSFGSVIGTHLGEGAVAF
                     GISPIIE"
     gene            complement(13273..13647)
                     /locus_tag="U1396_000564"
     CDS             complement(13273..13647)
                     /locus_tag="U1396_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HEM5341774.1"
                     /translation="MEIIRDKEFVNQYHFDARNHAWEKENGIPETKLKVDFQLIEQNR
                     AENRTSMITILRFMIVLDHFVISGAMSQAVHLPNRLVEEPTEFTDEEKRVLVEPLLDI
                     LKRMTYEVTEIAFDAPGVNLEF"
     gene            complement(13743..15698)
                     /locus_tag="U1396_000565"
     CDS             complement(13743..15698)
                     /locus_tag="U1396_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5341775.1"
                     /translation="MKIQDVLRKDVMLLDLQATSKEAVIDEMIASLVDKGYVTDFDVF
                     KTGIMNREAQTTTGLGDGIAMPHAKNAAVKEATVLFAKSNNGVDYASLDGQPTDLFFM
                     IAAPEGANDTHLAALAELSKYLMKAGFADRLRAATNPEEVIAVFDTAEAADKAVEEVV
                     AAPSGDRPFIVAVTACTTGIAHTYMAEEALKKQAAEMGVGIKVETNGASGVGNKLTAE
                     DIKNAAGVIIAADKAVDMPRFNGKPLVSRPVAAGIKQPEELINIILNGKAAAYTASEG
                     AATVESSEKLSLGKAFYKHLMSGVSQMLPFVIGGGILIALAFLFDGALGVPQDSLGSL
                     GSYHEIAAMFMKIGGAAFGFMLPLLAGYIAYSIAEKPGLVAGFVAGAIASSGLAFGKI
                     PYAAGGEETLALAGVSSGFLGALVGGFLAGGVVLVLRNALRNLPKSLQGLNAILLLPL
                     LGTAITGFLMFFVNIPMAAINTGMNNFLAGLEGSSAILLGLVLGGMMAVDMGGPVNKA
                     AYVFGTGTLAATVADGGSVAMAAVMAGGMVPPLAVFVATLLFKDKFTQEERNSGLTNI
                     VMGLSFITEGAIPFGAADPARAIPSFIAGSALAGALVGLSGIQLMAPHGGIFVIALTS
                     NPLLYIAYVLIGAVVSGVLYGALRKAK"
     gene            complement(15695..16606)
                     /gene="pfkB"
                     /locus_tag="U1396_000566"
     CDS             complement(15695..16606)
                     /gene="pfkB"
                     /locus_tag="U1396_000566"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HEM5341776.1"
                     /translation="MIYTVTLNPAIDYIVRLEHVETGSVNRMESDDKYAGGKGINVSR
                     VLKRLGYPNTATGFLGGFTGQFIKDGLIAEGIDTDFVQVDQDTRINVKIKADQETEIN
                     GLGPIVTDTQLAELEMVLAGLTKEDTVVFAGSAPASLGNEVYNRLIPVAKKAGAQVVC
                     DFEGQTLLDSLAHQPLLVKPNNHELEAIFNVELNDIADIETYAKKILEMGAQNVIISM
                     AGDGALLVTPAATYFAKPIKGTVKNSVGAGDSMVAGFTGEYVRSQDPIEALKWGVACG
                     TATAFSDDLASIEFIKETYEKVEVETL"
     gene            complement(16603..17352)
                     /locus_tag="U1396_000567"
     CDS             complement(16603..17352)
                     /locus_tag="U1396_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5341777.1"
                     /translation="MNILKSERKQIILERIHSQQFVRLEELIEVLDTSESTVRRDLDE
                     LENEGKLRRVHGGAEAPRNLQLEESILEKSVKNVQEKREIAERAAQQIVNGDVIFLDA
                     GTTTGVLIDYLQQENLTVVTNSIHHAVRLVERKIKTIIIGGFVKQSTDASVGAVALEQ
                     IRQLNFDKAFLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVK
                     VAAIEKSNIICQSSESSLLDIIKEKTRVIEV"
     gene            complement(17456..18511)
                     /locus_tag="U1396_000568"
     CDS             complement(17456..18511)
                     /locus_tag="U1396_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEM5341778.1"
                     /translation="MKRKVFEHYQPYKIKQKARFDLGNNENRIIDWSFLPQETLENLD
                     VNQLSFYGDNTYSELIEKYAAYLGVNPKQVTVGVGSDHLIHMIVSTFMEKDDTFLTVN
                     PDFFMYETYNHMHGSRFETIDLEAKNDTLVLPVEKLLARAEEVKAKIIMLSNPNNPSS
                     VAYSLEDLEKLAISFKGLLVVDEAYVEFANVESFISRLQQFDNVLVLRTLSKAFGLAG
                     LRVGFAVGSEELIYELDKVIPPFSLSNLTAKMAAVALNYTDKVLETVGVIQNLREEMI
                     LFLQGLDNCQVLPSQASFVTFKAPWAEEFYQQALAQDWNFKYYPTGKLEGHIRLSIGR
                     PEEMDMMKKMIEKLVEA"
     gene            complement(18542..19267)
                     /gene="trmD"
                     /locus_tag="U1396_000569"
     CDS             complement(18542..19267)
                     /gene="trmD"
                     /locus_tag="U1396_000569"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEM5341779.1"
                     /translation="MRIDILTLFPEMFAPLEHSIVGKARDKGLLEINYHNFREKAEKA
                     RHVDDEPYGGGQGMLLRAQPIFDTMDSIEQAKPRVILLDPAGRTFNQAYAEELAQEEQ
                     LIFICGHYEGYDERIKTLVTDEISLGDYVLTGGELAAMTMIDATVRLIPEVIGKEVSH
                     TDDSFSSGLLEYPQYTRPYEYRGMVVPDVLMSGHHENIRKWRLEESLRKTYQRRPDLL
                     ENYNFTAEELTIFEKIKAEDTVD"
     gene            complement(19257..19775)
                     /gene="rimM"
                     /locus_tag="U1396_000570"
     CDS             complement(19257..19775)
                     /gene="rimM"
                     /locus_tag="U1396_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEM5341780.1"
                     /translation="MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFDDK
                     DQFVMEVEIANHRKAKNFDIIKFKGMYHINDIEKYKGFSLKIAEENLTDLEDGEFYYH
                     EIIGLDVYENDILIGQIKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRV
                     DVELLEGLDDEN"
     gene            complement(19873..21222)
                     /locus_tag="U1396_000571"
     CDS             complement(19873..21222)
                     /locus_tag="U1396_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5341781.1"
                     /translation="MYQTRNNKEKLWLFIKIFLPILIYQFANYSASFIDTMMTGQYST
                     MDLAGVSMATSLWNPLFSFLTGIVSALVPIIAQYLGKGERDKIREEFHQFVYLAIGLT
                     ILLLCSVLFIAVPALAQFGLDESIFQVGRQYLYFISIGILPLLLFSVCRSFFDALGLT
                     QLSMYLMLLLVPFNSLFNYLLIYGKMGLPALGGAGAGLGTALAYWAVLLVIVIVMCKN
                     KTIASYQIWQWSPIDLSLLKEGLKIGLPIGLQVFAEVAIFAVVGLYMAKFSAQIIAAH
                     QSAMNFATLLYAFPASVSSALAIVIAYEVGAKRPQDVKAYSRLGRLVALGFAVLTLTF
                     LYFFRSKVAYLYGNDAEFIRLTSHFLSFALMFQLADAFTAPIQGILRGYKDTTVPFIL
                     GLVAYWSMTFPVAFLLERFFQMGPEAYWIGLISGIFVCGIALNLRLIIIAHSHLSVK"
     gene            complement(21292..22275)
                     /gene="guaC"
                     /locus_tag="U1396_000572"
     CDS             complement(21292..22275)
                     /gene="guaC"
                     /locus_tag="U1396_000572"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017769630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HEM5341782.1"
                     /translation="MFNETPVFDYEDIQLIPNKCIINSRSEADTTVTLGKYSFKLPVV
                     PANMQTIIDEDVAEMLAKDGYFYIMHRFDEAGRIPFIKRMHEQGLIASISVGVKEYEY
                     EFVTSLKADAPEFITIDIAHGHAESVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN
                     AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA
                     KSIRFGASMVMIGSLFAGHIESPGKTIEVDGEKFKEYYGSASEYQKGAYKNVEGKKIL
                     LPAKGHLKDTLVEMEQDLQSSISYAGGRDITSLKHVDYVIVKNSIWNGDSI"
BASE COUNT         6528 a         5087 c         4271 g         6520 t
ORIGIN      
        1 tatccttgga gaatcataaa aactatggta caataaacga aaaataaagg aggaaatata
       61 tgccatttgt acgtattgat ttgtttgaag gacgcacaga agaacaaaag attgccttag
      121 cacgtgaagt taccgaagtt gtatctcgta atactaatgc gcccaaagaa gccattcatg
      181 tcttcatcaa tgatatgcct gaagggacct actacccaca aggtgaaatg aaacgaaaat
      241 aagagaaaac actcttgcaa gaaaatgcag gagtgtttct ttgtatcaag tttatttctt
      301 atcgtcttca tccatgctga gaacactgag gaaggcttct tgtggaactt cgacagagcc
      361 gatggctttc atccgttttt taccagcttt ttgcttttct aggagtttgc gtttacggga
      421 aacgtcacca ccataacact tggccaaaac gttcttccga agagccttga tgtcgctacg
      481 ggcaacaatt ttctgaccga tagctgcttg gattggtact tcaaactgtt gacgaggaat
      541 gatttttttg agtttgtcca cgataatttt cccacgttcg taggcaaatt ccttgtggac
      601 gataaagctg agggcatcga ccttatcacc attgaggaga atatccattt tcaccaactt
      661 ggatgaacgg tattcagaaa tctcatagtc gaagctggca taaccacgag tggacgactt
      721 aagcttgtca aaaaagtcaa aaacaatctc agccagtgga atttgataaa taacattgac
      781 acgattatca tcgatgtaat ccatagtcac aaagtcaccg cgtttgcgtt gggccaattc
      841 catgactgca ccgacgtatt cctgtggtac catgatttgt gccttaacgt aaggctcttc
      901 gatagtggca atcttggttg ggtctgggaa ttcggatggg ttggctacat caatcatttc
      961 accgtccgtc atgttgacat ggtagacaac cgacggtgct gtcatgatga ggtcaatgtt
     1021 aaactcacgc tcaatccgtt cttggataac atccatgtgc aagaggccca agaatccaca
     1081 acggaaacca aatccgagtg cctgcgatgt ttctggctca aactgtaagc tggcatcgtt
     1141 gagttggagt ttttccaagg cttcacggag gtcattgtac ttgttggaat cgattggata
     1201 gatacctgca aagaccattg gattcatctg cttgtagccc gctagtggct cgctagcagg
     1261 attttttgcc aaagttaccg tatcaccgac acgggtgtcg gcaaccgtct tgatagaggc
     1321 tgcaatgtaa cctacatcac cagtcgccaa ataatcacga ccgattgctt tgggtgtgaa
     1381 gatacccact tccgtcacat caaaggtttt gccattgctc atcatctgaa tagtatcgcc
     1441 aggttttacc acaccgttga caatacgaac ttggaggata acgcctcgat acggatcgta
     1501 aaccgagtca aaaatcaagg cttgcaatgg agcttcgaca tcaccagtcg gtgctggaac
     1561 cttctccacg atctgctcca agatttcctc gataccaata cctgccttgg ctgatgttgg
     1621 cactgcttcg gaagcatcca aaccaatcac atcttcgatt tcctgacgaa cacgttctgg
     1681 gtctgctgct ggtaggtcaa tcttgttaat gattggcaag atttccaaat cattgtccaa
     1741 ggctagataa acgttagcca aggtctgtgc ttcaatccct tgagcagcat ccaccactaa
     1801 aatcgctcct tcacaggcag ccaacgaacg cgatacctca taggtaaaat ccacgtgtcc
     1861 tggtgtgtca atcaagtgga aaatgtatgt ctctccatct ttagctgtat agttgagttc
     1921 gattgcgttg agtttaattg tgataccacg ctcgcgttcc aagtccatac tatctagcaa
     1981 ctgggcttgc atttcacggc tggaaactgt ttctgtcttc tcaagaatac ggtcagccaa
     2041 ggttgattta ccatggtcga tgtgggcaat aatggagaaa ttacgaattt tctcctgtcg
     2101 ttttttcaaa tcttctaaat tcatgtttct tcctctacaa ggctattact cctcattata
     2161 tcagatttag tgataatttt ccataagaaa aacacctaga aaactaggtg tctgctctgc
     2221 tattttccca gccaaagacc gatctctcgt tcggctgctt ctgcactatc tgagccatga
     2281 acgacatttg ccacaattcc ctcaacgggc gctgtcgcaa aatctccacg aatagtccca
     2341 ggtagggcgt ttactggatt ggtagctccc atcatatctc gccaagattt gataacttct
     2401 ggcccttcta taatgccagc tatcatcggc ccgctcgtca tatattgtac taattgcggg
     2461 aagaaaggtt tatctgtcaa atgatcataa tgttgactga ttagctcttc tgtcgctgta
     2521 accattttta aatctcggat ttgaaatccc ctgcgttcga tacgtgaaag aatttgtcct
     2581 gcaagtccac gcttaagagc atctggtttg atgatgaaga aagtacgttc catgattttt
     2641 ctcttgaact gtttattaga tgttacttaa gatagcatcc catgcctgat cgtatccgtg
     2701 acgagtctca gaagaaaaga taacgaattg atcattttta tcaaaatcca atttcttttt
     2761 aatcatcgat tcgtgcttat tccactttcc ttgtgggatt ttatcagcct tcgttgccac
     2821 aataataaca ggaatttcat aatatttcaa gaaatcatac atttgaacat catctgctga
     2881 tggctcatga cgcatgtcta ctaaactcac cacaacacgt agattttctc gtgtcgtcaa
     2941 atactcttca atcattttgc cccacttagc gcgctccgtt ttggatactt tagcatagcc
     3001 ataacctgga acatctacaa atcgaatttt atcatctata ttataaaaat tgagttgttg
     3061 agtctttcct ggttttcctg acgtacgtgc aagatttttt cttcctagaa gagtattgat
     3121 aaatgaggac tttccaacgt tagatcgccc ggcaagggca atttctggaa tgtcatcgcc
     3181 cggatactgg gcttttgaaa cagcactgag caaaatctca gcattatgtg tgttgatttc
     3241 cattttatac ctttcataaa taagggtaga aaacaatcag tttccaccct ttattttttt
     3301 atgcagtttc tagtaaaggc ttttccttac cgtctactgc tgctttggtt acacgaacgc
     3361 gtttaacgtt atcttgacct ggcacctcaa acatgacatc caacatcgtt tcttcaatga
     3421 tggagcgaag tccacgagca ccagttttac gttcaattgc tttttctgca attgctaaca
     3481 aggcgtcctc atcaaagtca agctccacgt catcataaga caagagtgtc tggtattgtt
     3541 ttacaagagc attcttcggt tccgtcaaaa tgcgtaccaa atcctctgtt gtcaattggt
     3601 ccaaagctgc gaatacaggc aagcgaccaa tcaactctgg aatgataccg aatttttgaa
     3661 tatcgtctgc aatgatatgt tgcatgtatg attctttttc atcaatagca cgattattat
     3721 gaccaaaacc gatgattttt tcaccgagac gctgcttgac gatttcttcg ataccatcaa
     3781 atgcaccgcc aacgataaac aggatatttt tggtgtccac gtgaatcatt tcttggtttg
     3841 gatgtttgcg tccaccttgt ggtggtacgc tggccacagt tccctcgata atttttagga
     3901 gagcttgctg gacaccttca ccagatacat cgcgggtaat ggacacattt tcaccttttt
     3961 tggcaatttt atcaatttca tccacataga taattcctct ttctgcacgg tcaatgttaa
     4021 agtctgcagc ctgcaaaagt ttgaggagga tattttctac gtcttcacca acataacccg
     4081 cctcagtaag agcggtcgca tcggcaatag caaacgggac attcaaactt ttagccaagg
     4141 tctgagctag gaaggttttt cctgaaccag tcgggccaat cataaggata tttgattttt
     4201 gcaaatcaac atcgttctca tcacggctat cttggaaatt gatacgtttg tagtggttgt
     4261 aaacggctac tgctaaagca cgttttgcac gatcctgtcc gatgacgtag ttgttcagaa
     4321 tattgagtaa ttcttgtggc tttggcgtat cggccaagtc tgtcaaaact tcttctgcca
     4381 gttcctcacg aatgatttcc tgtgctagtt ccacgcactc attacaaatg aagacattgt
     4441 ttcctgcgat aattttttta acttcttctt gattttttcc gcaaaatgag caatagatta
     4501 gctcatgtgt atgcttaaca gccatgtgtt tcctctttca tatctcttat ctaaataaaa
     4561 atccataaat ggcgtgaata ctattgacca gattggtaaa agcattcagt aaaaataaaa
     4621 ttgctaaacc aaaacgtttc ttccgaaagg cttgaatcgc acaaagaaca caaatcccac
     4681 agagaaatgc tgtaaataaa ccgaataaac ttctctccat gcctaaccat ctcttctttc
     4741 ataggttttt attgtaaaat catacgggtt tttctcgtct tttggacgta aattggcgct
     4801 ttgtagctga aatttctcca taggaaatgc tttcggaaaa tacacatcgc cattaaattg
     4861 accgtgaata tctgtcacta ttaatgtttc aatgtaaggt gcaaaagcag taaaaatttg
     4921 tcccccacca atcacaaata gtgtctgctc ctgtttgtta taccaatcta gaacatcttc
     4981 cacactgtgt aaaatggtaa tacgttcact ctctagttga taggttttat ccgttgtcaa
     5041 aacgatggtg tgacgattgg gaagagcacg tttacccatg ccgtcgaaag ttatacgtcc
     5101 catcaccatc gtgtgaccta ttgtcgtttc tttgaaatga gctaagtcag ctggcaatga
     5161 ccaaggaagt ctatcacctt ttccaatcaa tccattttca tcttgagccc aaatggcaac
     5221 aatcttttta gtcattttct ctcactttcc gtcctatcat tctatcaaaa aaacatgaaa
     5281 aatgcactta ccaagtaggc caagcgcaaa tttttatcat gttgaaacta tcaccaactc
     5341 ctcagagata gggaggagtc cgagattcgt agaatgtgaa cctcgctggt gctggaaagt
     5401 ccccctcatc ttaaatcgct aagtcaaaat taagttgcgg tttaactggc ttcgaaagtc
     5461 tgagtataga ctgttgaagg ttggaagtga aacagttcgg ggaactgttt cagcccgagc
     5521 ctaaaaataa agaagcgagg taaaagaacg aagttcttca ctgctaatcc agttaaattg
     5581 ctaaatcgaa ttttaactgc ggtttaactg gattgtagtc caccaactca aaatcttctg
     5641 cccgaatgtc aaagaaattg gtgccgtcag gaacatttaa gaccaaacgt ggctcaactt
     5701 cagatggtgt gcgacggagt aattcttcag cctgttcaaa ctgattatca tagatgtgaa
     5761 gattgttgat gaaatagaaa aacttcccaa ccttccagcc aaaatgttta gcaatcatca
     5821 tctgaagggc tacatactgc atagcgttga tatgatgggc taccaacata tcatttgacc
     5881 gttgagttag agttgcatcc aaataaatct ccccatccac tcgccgaacg tcaaacatgg
     5941 tctgaaaggc acatggcaaa agacccgcgg attggtcaaa tgcttcataa tcccacaaag
     6001 aaatcacatt acggcggttc catggatttt cctccaattg cttgaggatt tttgaaatga
     6061 tgtcatgctt tttaacaatt gcaccatagc gttcaccgat tgtgcctgtt ccttcaactt
     6121 cccagtcatt ccaatactgg acaccgtatt tttcctgtaa aaccgacaaa tcattggtct
     6181 ggtcttggta aatccagaga atttccttga tggctgattt aatcggaata ggtctaagtg
     6241 ttgtaatagg aaactccccc ttagacaagt catactcagc aaaggcgcct gtaacgtact
     6301 tggaattagc gacatttcca tccttgtaac gtgggcgagc attttctgaa aaaacgccct
     6361 cttccataat cttacgaatg ttttctttaa aaataatatc tgctttagtc atggtcttag
     6421 tatagcaaat tctagcaaaa aactccagtt ttgtaccgga gttctcattt gaaaaagaat
     6481 gaataaaaat taaggtggaa caaaccagat agggcagtta ttaggctgaa cagtataaaa
     6541 tacaaggcaa ccaaaatagc actcaacaat atctgacgaa catttttagt ataaatagcc
     6601 gttggtaagc tggctagtcc gaaaaatgga atgatgaaaa atgttagttt aaaattcaca
     6661 tttacaatat caaaccattg ccctattggc aaaaatagca tgacgaagag aaaaattgcg
     6721 ataccataca aaactagatt taatcttttt agtaaagtca ggttcataac cgctccttct
     6781 aggggccaaa tataaagtag ccaataccga atatcagagg aaatgagatc attaagaaga
     6841 tactaatcaa accagtccac aattttttat aatagataga tagtataaga attagagtcc
     6901 ccagtagagg gagaatcaac atggttgcta cgtttcccca gctagacggg aaaaaccagt
     6961 cacgaatcca gttatcaagg aaaaaagcag ataacaaaat caataaacca agaatggtca
     7021 gatagttgat tattttagac atgttcacct gtttcataag gtgacactcc tttctcttta
     7081 cactttcatt gtacgcttaa atactacatt tttcaatata tgtatataaa gaaaatgtga
     7141 cagcggaatt gaaaaaaagc agagtttccc ctgcttttaa cgattatttc aagacaagtg
     7201 atgctgcgcc caatacacct gcatcattac cacgtgttgc caagacaatt tgcgtgcttt
     7261 ccttgatttg tgggaagcta ttttcagcaa agactttacg aacaccatcc aataagagct
     7321 ctcctgcagc tgatacaccg ccacccagaa cgatgtaggc aggattgagg actgcagcaa
     7381 tgtttgcaca agcaacacct aggtattctg agaagtgacg gtagacaatc aaagccaaat
     7441 catcgccttc ttttgccaaa tcaaagacat ctttagccgt tacatcttgc ccatcatcaa
     7501 tcatttgttt cagttttgca tcgcctgcgt attggtccgc ataacgacgg ctaaggttga
     7561 caatacctgt cgctgaagcc acggtttcca agcaaccttt cttaccacaa gtacatgcaa
     7621 atggctcatc aaagtcaact gtgatatggc ccaattcacc accagcgcct ttgaccccac
     7681 gaatcaagtt tccagcagcg atgacaccgc caccgacacc tgtaccaagc gtcataaaga
     7741 caacgtttgg attgttgttt ccagcaccaa cccactgctc accgagagcc gctacgtttg
     7801 catcattgtc gatgaaaaat ggtaaaccga gcgcagattc aaactgatct ttaaccaatt
     7861 gcaaggtctt ccagttgagg ttataggctc cgataacagt gccagcttca ctatccacta
     7921 caccgggtga gcccatacca attcctaaga aattgtcctt tgtcaaacca tgggtttcaa
     7981 aacgatgttg aatgctgtca ataatatctg gaacaatatg gcttccatcg tctaatatat
     8041 ttgtcttgat agaccatttt tcttgaattt ctccctcagt agtcaaaatg gccaatttaa
     8101 cagaagttcc cccaaggtca ataccgataa tttttttaga cataatcatc acctcaaatg
     8161 tattttcttt attataacac aatgcaaagg tttgcgtaaa gcctttgcaa aaatttgtac
     8221 ggataaaaat taattgctct atcgaaagag atagagcaaa attaaaaatt gaatatgtaa
     8281 gataaacctt ccaatggaaa agagcataac tgtcgtaaaa ttactacctt ctttcgttcc
     8341 attatagaga aaaagagtag aaataaaggt aaatcctaga gcaaacccca ccatctgcaa
     8401 gtcgtgataa gactgactat aaaaatacaa ggtgcttgtc agcaatatca tggataggat
     8461 agttaaaatc aagcgcaatg tattcatttt tttggtcttt agatagctaa acaaagccgc
     8521 tcccaaggtc accaagagat agatgaccat atatgacatg acaagaactt tcatctagcc
     8581 ctccagttcg ctcagatact cataccgctc atatttttcc aagagcagat cgtttttctc
     8641 atccaattcc ttctgcaaat cggataattt tgtaaaatca ctaccacagg tcagcatttc
     8701 cgcctcgatt gccgcaatcc gctcctccaa gccagcaata tcctcttcga tggttgccca
     8761 ttcctgcttc tcaaagtagg acatccgctt cttgttctct ttgattttct cggttttctc
     8821 ctttggtttt tccaaagaaa tggcagagct ggaagccaga aaggccttct catccagata
     8881 gtctgtgtag ttaccaaaga aggtctctat accgctatct tcgaaagcca agattttatt
     8941 ggctaccttg tctaggaaat aacggtcgtg actaacggta atgactggac cagtaaagct
     9001 ttgcaagaaa tgttccaaga ctgtcagagt cgctatgtcc aagtcgttgg tcggctcatc
     9061 tagtaagaga acattgggcc gttgcaagag aatcttcagc aaataaagtc gcttcttctc
     9121 cccaccagac aatttctcaa tcagggtacc atgggtatta cgtgggaaga ggaattgctc
     9181 taagagttcg gcaattgaaa ccataccaga agtcgtctta gcttcttctg ccacttcctg
     9241 caagaaattg atgacccgct tgctttcgtc caagcccttg atggtctgag aaaaataacc
     9301 gatacggatg gtttcaccaa tatctacctt accgctgtct gcctgcaaat cacctgcgat
     9361 aagattgagt aaggtagatt ttccttttcc attatcaccg acaattccta tgcggtcctt
     9421 gttttgaatg agcaggttaa agtctgctaa aatgggctta tcaggatagg aaaagctgac
     9481 attttcaaag ttaatgactt ttttaccgat acgagaggtt tcaaaattga tttccaattc
     9541 gctatcgtct atcttgttgg ctaaatcgcc tttaaggtca tggaaacgat tgatacgggc
     9601 ctgttgcttg gtagcacgag cttgaggttg tctgcgcatc caagccaact cttgtttgta
     9661 gagctgctct ttcttatggc gaagggcggc atctcgctcg tcctgttctg cctttaagcg
     9721 aacatagtcc tggtaatttc cctgatattc ggttaagctt gcgcgatcca attcaaaaat
     9781 ccgtgtcgcc acattgtcca agaaatagcg atcgtgggta ataaagagaa cagacttttt
     9841 agtatttttc aagaaagtcg tcaaccactc aatggtatca atgtccaggt ggttagtcgg
     9901 ttcatccagc aagagcaagt cagcattgcc aaggaggact tgggccaatt gcactcgtct
     9961 acgtagacca cctgataact caacaacggt tttgttgagg tctgtcagac cgagttttga
    10021 cagaacagtc ttgacctgac tttcaatctc ccaagcattg agagaatcca tctctgccat
    10081 gactttctcc agtcttgctt gacttgcttc atcgtaatga gataagagca actcgtattc
    10141 acgaatcagc tgggtttcgc gtaggtcaga tgaaagaacg gtgtctaaaa ctgtcttact
    10201 ttcatcaaaa tcaggttcct gggtcagata ggcgatttta taggcatttt ttgtacgaaa
    10261 aggtgataca tctccgtcaa aaccgatacg acctgacagg acatccaaca aagtcgtctt
    10321 tcctgtacca ttgaccccaa taatcccgat tctgtcgcct tgatggatga tgaaagacag
    10381 atcagcaaag accgttttat ctccgacaga tttagtcagg tgttcaacga taaaatcact
    10441 cattctctaa gattcctttc acaaatgtca taatcgcttg ctcttcgttt tccagctgtc
    10501 cttccacaat ctggaattcc acctctttga gtagttctcc caatactgga cctggtttga
    10561 ggtcaaatgc cttcatcaga tgtcctccat tgacaacaat ttcatgcttg tcgtggatag
    10621 tcaaggcttg gtcaatctta tcgattgcta caaaatctgt gacaagacct tgtgcctgac
    10681 gaagttcctc taccaagtat aagaattctt tgccatactt gaaacagatt tgtttagtga
    10741 caggtcctgc ttggcggagc tgataaatct ctactaattt gaccacgcta cgttggaaat
    10801 cattgctggt tttccatttt ttcaggaagg atttgatgct atcaatacct aggcagacaa
    10861 agagcatggc ccaagcttgt tcagatgtcg aaaagcgaaa ctcttctgtc agacttgtta
    10921 gcatggtctc taattcatca ctttttccag ctaaatcagg caagaaattg taagccttgg
    10981 aatcaatcat agcgcgcaag ccttttcgcc aaaaatccgc catcaagagt ttatcaaact
    11041 cgataaagct acgttccacc gagatttttt ctaaaagcgg tgcagtttta accatggctt
    11101 caaaggtagt cggctcaatt tcaaagtcca aggtcgctgc aaagcgaaat ccacgcatga
    11161 tacggagagc atcttcgttg aaacgctcag ccgggatgcc tacagcccgt agggtgcggt
    11221 tttccaagtc agtcatccct tcaaaaaggt caatgatttg agcctcttca tcaagggcaa
    11281 aggcattaac tgtgaagtcg cgacgtttga gatcctcttc taaggaacgc acaaaagaaa
    11341 cctgactcgg cctacggaag tcgacatact cctcttctgt ccgaaaggtg gtaatttcat
    11401 actccttttt cccctctaat accaacaccg taccgtgttc aattccgaca tcaatagtcc
    11461 gtgaaaagat ttgtttcgtt tcctgagggt agctggatgt cgcaatatcg acatcatgaa
    11521 taggcctacc gagaatggca tcacgaacgg aaccgccaac gaaataagcc tcgtaaccag
    11581 ctgctttaat tttctctaaa atcggcaaag cctcctgaaa ctcagaaggc aggttgttta
    11641 atttcataat aagtgttcca aaccataaac gagttgtgag cgtttgacta cctctttaat
    11701 gccgagattg acaccgccca taaaggaaat acgatcgtaa gagtcatgac gaatggtcaa
    11761 gccttctccc tgtgccccaa aaatcacttc ctgatgggca acaaggcctg gcaagcgtac
    11821 tgagtggata cggaagccat caaatgctgc accgcgagcg ccagcaatca gttcttcttc
    11881 atccgctgca ccttgagtct gtgactgacg gacttgtgaa atgagttcgg cagttttgac
    11941 agccgtacca ctcggtgcat ccttcttctt atcgtggtgt aattcaatga tttcaagatt
    12001 tgggaaatac ttggctgcct gtgctgcaaa ttgcatgagc aagatagcgc caatagcaaa
    12061 gttaggagca atcaagccgc ccaaaccctt ctcagcagat aaggcggtca attcctcgat
    12121 ttcttcaggg gtaaatcctg tcgttccaac cacaggtgcg aaaccatttt ccaaggcaaa
    12181 acgggtgttt tcataggcaa attttggcgt tgtaaaatcc acccagacat cagcttctag
    12241 gctggcaact tcttctttgg tcttgaaaac aggaacacca tctacttctg tttctgtcgc
    12301 aaagggatcc accaaggcag ccaaactaag tgctgcgtca cctttgacca tctcaacagc
    12361 cgttgagccc atttttcctt tgaatcctgc gataattacc ttaattgtca tgcaaactcc
    12421 tattcaataa tgggagaaat accaaaggcc actgcccctt ctcccaagtg cgtaccgatg
    12481 accgaaccaa atgacacgat tggtaaatcg ctaccgacac ctgcttcttc caactgctgt
    12541 ttaaagtttt cagccttctg aggtgcgttg gcgtgtatga tagcaatctg atactgtcct
    12601 tcggtcgttt gttcttggag gatttccaag aggcgtttaa tggccttttt ctccgtccga
    12661 actttttcat acacttcaat cttaccctcg cctgtaaaat acagaatcgg tttgatgctc
    12721 aaaagattgc caagcaaggc tgcaccattg gacaagcgac caccttttac caaatgattg
    12781 aggtcatcaa ccatgatgaa ggctgtagtc ttcccaattt cttggtccaa tttcccagta
    12841 atctcttcaa aactaagtcc tgcatcagcc catttgagaa cattttcgac catcatgcct
    12901 aaaggagccg atgtaatttt ggtatctgga aaggcaacgg ttaatccttc aaattcatca
    12961 gccaaatatt gaatattttg ataaaaacct gaaatacctg atgacaagaa taagccaagt
    13021 gcgtgtgtat agcctttctc tgttaattta gccagaattt cttctagttc catcaaactc
    13081 ggttgacttg ttttaggtaa ttctttcgat gaagccattt tttgataaaa ctcttcaacc
    13141 gtcaaatttt gcccttctat ataattttcc ccatcgatgc tgactggaat acttaggaca
    13201 aacaggtcat cccgctcaat actttgaaca ttcaaaatag ccgatgagtc agttataact
    13261 gctaacttca tattaaaact ccaaattcac tcctggtgca tcaaaggcga tttcagtaac
    13321 ctcataggtc attcgtttta aaatgtccaa aagaggctct accaaaacac gtttttcctc
    13381 atcagtaaat tcagttggct cttctaccaa tcgatttggt aagtgaacgg cctgactcat
    13441 ggcacctgaa atcacaaaat gatctagtac aatcataaag cgcaaaatgg taatcatcga
    13501 tgttcgattt tccgcacgat tttgctcaat caattgaaag tcaactttca attttgtttc
    13561 cggaattccg ttctcttttt cccacgcgtg attgcgggca tcaaaatgat actgattgac
    13621 aaattcttta tcgcgaatga tttccatttc aagactcctc taataacaat aatactcaca
    13681 ttataccata atcctcgtga aatagctaaa aaaccttgcc agaagcaagg tttcaatcaa
    13741 aattatttag ctttacgaag tgctccgtaa aggacacctg atacaaccgc accgatcaaa
    13801 acataggcga tgtaaagcaa tggattagat gtcaaagcga taacgaagat accaccgtga
    13861 ggagccatca attggatgcc tgacaaacca accaaggcac ctgcaagggc agaaccagcg
    13921 ataaagcttg ggattgcacg agctgggtca gcagcaccaa atggaatcgc accttcagtg
    13981 atgaatgaaa gacccataac gatgtttgtc aaacctgagt tacgctcttc ctgtgtgaat
    14041 ttgtctttga aaagaagggt tgcaacgaat actgccaacg gtggaaccat accacctgcc
    14101 attaccgctg ccatggcaac agaaccacca tctgcaacag ttgctgcaag tgtacctgta
    14161 ccgaagacat aagctgcctt gttgactgga ccacccatat cgactgccat cattccaccg
    14221 aggacaagtc caaggagaat agcagagcta ccttcaagac ctgcaaggaa gttattcatg
    14281 cctgtgttga tagctgccat tgggatgtta acgaagaaca tcaagaaacc agtgattgct
    14341 gttcccaaaa gtggcaagag caagatagcg ttcaaacctt gaagtgattt tggaaggttg
    14401 cgcaaagcgt tgcgaagaac gagcactaca ccaccagcaa ggaaaccacc aacaagggca
    14461 cccaagaaac cagatgatac acctgcaaga gcaagcgttt cttcaccacc agctgcgtaa
    14521 ggaattttac cgaacgcaag accgctacta gcaattgcac cagctacgaa acctgcaacc
    14581 aaacctggtt tttcagcgat tgagtaagca atgtaacctg ctagaagtgg caacatgaag
    14641 ccgaaggctg ctccaccgat cttcatgaac atagctgcga tttcatggta tgaaccaaga
    14701 ctaccaaggc tgtcttgtgg tacacctaaa gctccatcga ataggaaggc aagggcaatc
    14761 aagataccgc caccgataac gaatggcaac atttgagaaa caccactcat caagtgttta
    14821 tagaacgctt tgccaagact gagtttttct gaagattcca cagtagctgc tccttctgac
    14881 gctgtgtagg ctgctgcttt accgtttaag atgatgttaa tcaattcttc tggttgtttg
    14941 ataccagctg caactggacg agataccaat ggtttgccat tgaaacgagg catgtcaaca
    15001 gccttatctg ctgcgatgat aacacccgcc gcattcttga tgtcttcagc agtcagtttg
    15061 ttaccaaccc cagacgcacc gtttgtttca accttgatgc caacacccat ctcagcagcc
    15121 tgcttcttaa gagcttcttc tgccatataa gtgtgagcaa taccagttgt acatgctgta
    15181 actgcaacga taaatggacg gtcgccacta ggagctgcaa ccacttcttc tactgccttg
    15241 tcagctgctt cagctgtatc gaagactgca atcacttctt caggatttgt tgccgcacga
    15301 agtctatcag caaatccagc tttcatcaag tatttagaca attccgcaag ggctgccaag
    15361 tgcgtgtcgt tggcaccttc tggagctgca atcatgaaga acaagtcagt tggttgacca
    15421 tcaagacttg cataatcaac accattgttt gattttgcaa agagaacagt cgcttctttt
    15481 acagccgcat tcttagcgtg tggcattgcg ataccgtcac caagtcctgt tgtcgtttgt
    15541 gcttcacggt tcatgatacc tgttttgaaa acatcaaaat ccgttacata acctttatca
    15601 accaaactag caatcatttc atcaataact gcttccttgc ttgtcgcttg caaatcaagc
    15661 aacatgacat cttttctcaa aacgtcttga attttcatag tgtttctacc tcaacttttt
    15721 cataagtttc cttaataaat tcgatacttg ccaaatcatc tgaaaaggct gttgccgtac
    15781 cgcaagcaac tccccatttt agggcttcaa ttgggtcttg tgagcgaacg tattcgccag
    15841 tgaatcctgc caccatggaa tctccagctc cgacagagtt tttcactgta cccttgattg
    15901 gtttggcaaa gtaagtagct gctggagtga ccaacaaagc cccatcccct gccatggaaa
    15961 tgataacatt ctgagcaccc atttctaaga ttttcttagc gtaggtctcg atatctgcaa
    16021 tgtcattcaa ctcgacgttg aagattgctt caagttcatg gttgtttggc ttgaccaaga
    16081 gtggctggtg tgctagtgag tctagaagtg tttgaccttc aaagtcacag accacttgcg
    16141 ctcctgcttt tttagccaca ggaatcagcc tattatagac ttcatttcca agactagctg
    16201 gagcagaccc agcaaagaca acggtgtctt ctttggtcaa tcctgctaag accatttcta
    16261 attcggccaa ctgtgtatct gtcacaatcg gacccaaacc gttgatttct gtttcttggt
    16321 cagctttgat tttcacgtta atacgtgtat cttgatcaac ctgaacaaaa tcagtatcaa
    16381 ttccttcggc aatcaatcca tctttgatga actgacctgt gaatccccca aggaaacccg
    16441 ttgctgtatt aggatagccc aatcgcttca aaacacggct aacgttaatt cccttaccgc
    16501 cggcatactt atcgtcgctc tccatacgat tgacactgcc cgtctcgaca tgttctaaac
    16561 gaacgatata gtcaatcgct ggattgagcg taactgtata aatcatacct cgattaccct
    16621 cgttttctct tttatgatgt ccaacaaact gctttctgaa gattggcaga taatgttgga
    16681 tttttcgatt gccgcaactt taacaaagga gaattgacca attttagaag catctgccaa
    16741 aacatagctt tctttagcat tgtctatgat agtgcgtttg atggtcgctt cttcaatatc
    16801 tggcgttgta aaatagtttt tatctatacc attcatcccc agaaatgcct tatcaaaatt
    16861 gagctgtcga atttgttcca atgccactgc tccaacggaa gcatctgttg attgcttaac
    16921 aaaaccacct ataatgattg tttttatctt gcgttcaacc agcctcactg cgtggtgaat
    16981 agaattggta acgactgtca gattttcctg ctgaagataa tcaatcagta caccggttgt
    17041 tgtacctgca tctaaaaaaa ttacgtctcc gttaacaatt tgttgagcag ctctttccgc
    17101 aatctctcgt ttttcttgaa cgtttttgac agatttttct agaatagact cttcgagttg
    17161 caaattcctt ggggcttcag caccgccgtg tacacgacga agcttacctt cgttttccaa
    17221 ctcgtccaaa tccctacgta cagtagactc agatgtatca agaacttcga ttaattcctc
    17281 tagccgaaca aactgttgag agtgtattcg ctccaatata atctgttttc gttctgattt
    17341 gagtatgttc aacacctcct gcaatcgttt acaaaaatca ttatacacga ttttctgcca
    17401 ttgtcaatca ttttctatca ttttctttca aaaaaacaaa aaaactagca gaaatctacg
    17461 cttccactag tttctcaatc atttttttca tcatatccat ttcttctgga cgaccaatag
    17521 ataggcgaat atgcccctct aatttacctg ttggataata tttgaaattc caatcctgtg
    17581 ccaaggcttg ctgataaaat tcttctgccc atggtgcttt aaacgttaca aaactagcct
    17641 gactaggtag aacttgacag ttatctaacc cttgcaagaa taaaatcatt tcttctcgca
    17701 aattctgaat tactcccact gtttctaaaa ccttgtctgt ataattcaat gcaacggctg
    17761 ccatttttgc agtcaagttt gacaagctga atgggggaat gaccttgtcc aattcataaa
    17821 ttaactcttc gcttcctacc gcaaagccaa ctcgtaaacc tgcaagtcca aaagcctttg
    17881 ataaggtccg taaaactaaa acattgtcaa attgttgcag acgactgatg aagctttcga
    17941 catttgcaaa ttcaacataa gcctcatcta caacgagtag ccctttaaaa gaaatagcca
    18001 atttctccaa atcttctagt gaataagcta ctgaagaagg attgttagga ttggaaagca
    18061 tgattatctt tgccttcacc tcctctgcac gcgccaacaa tttctctact ggcaggacga
    18121 gcgtatcgtt ttttgcttcc aaatcaatgg tttcaaaacg gctaccatgc atgtgattat
    18181 aggtttcata catgaagaag tctggattga cagtcaaaaa agtatcatcc ttttccataa
    18241 aggtggaaac aatcatgtga ataaggtgat cagagcccac acctactgtt acttgtttgg
    18301 gattcactcc aagataggcc gcatatttct cgatcagttc ggagtaagtg ttatcaccat
    18361 aaaaacttaa ttgattgaca tccaaatttt ccaaggtctc ttgtggtaaa aaggaccaat
    18421 caataatgcg attttcatta tttcccaagt caaacctagc cttttgtttg attttataag
    18481 gttggtaatg ttcaaatacc ttgcgtttca tcatttctcc ttctagcaag aaaaacacag
    18541 tctaatcaac tgtgtcttct gccttgattt tttcaaaaat agttaactct tcagctgtaa
    18601 agttgtagtt ttccaacaag tctggacgac gttgataggt tttgcgtaga ctttcttcca
    18661 aacgccattt acgaatattt tcatggtgac cgctcattaa tacatctgga actaccattc
    18721 cacgatactc gtatggtcgg gtgtattgag gatattccag tagaccagat gaaaaactat
    18781 catccgtatg actgacttct ttgccaataa cctctggaat cagacgaacg gtagcatcaa
    18841 tcatggtcat agctgccaac tctccacctg tcagaacata gtctccgaga gaaatctcat
    18901 ctgttaccaa ggtcttaatc cgctcatcat atccttcata gtgaccgcaa atgaaaatca
    18961 gctgctcttc ctgtgccaat tcttcggcat aggcctgatt gaaagtacgc ccagcgggat
    19021 ccaataggat aacacgtggc ttggcttgtt caatgctatc catggtatca aaaattggct
    19081 gggcacggag caacatgcct tgtcctccac catagggttc atcgtccaca tggcgagcct
    19141 tttcagcttt ctctcggaaa ttgtggtagt tgatttctag caagcccttg tcacgcgcct
    19201 tacccacaat agagtgttct agaggtgcaa acatctcagg gaagagggtc aaaatatcaa
    19261 ttctcatcgt ctaggccctc gagcaattcc acatcgacac ggttatttgg aatatcaatg
    19321 ttcaagacaa caggtggaat atatggcaag agcaggtctt tcttaccttt tcgtttcacc
    19381 acccagacat cattggcacc tggctgcaag atttccttga tttgtccgat cagaatatca
    19441 ttctcataga catccaagcc gataatttca tggtaataaa actcaccatc ttcaaggtca
    19501 gtcaagtttt cctcggcaat tttcaaacta aagcccttgt acttttcaat atcgttgata
    19561 tggtacatgc ccttaaactt gataatatca aagttcttag ccttacggtg attagcaatt
    19621 tccacttcca tgacaaactg atccttgtca tcaaaaagtg caagctttgc ccctttttta
    19681 aaacgttctt ctgcaaaatc ggtcacagac aaaacacgca tttccccttg taggccttgc
    19741 gtgttaacaa tctttcctac gttaaaataa ttcataattt ctccatttga ttttctatcc
    19801 ttttatttta acatgagcaa gatattttca caagagagaa aaagccggat gtctccgact
    19861 ttcatagtta atttatttca cggacaaatg agaatgagct attatgatca agcgcaaatt
    19921 aagagctatt ccgcagacaa aaatccctga aataagaccg atccaatagg cttctggacc
    19981 catttggaaa aatctttcaa gcaagaatgc gactgggaag gtcatggacc aataagcaac
    20041 caaaccaagt ataaatggaa cagtcgtatc cttgtaacca cgtaaaatcc cctgaatagg
    20101 tgctgtaaag gcatctgcta actggaacat gagggcaaag ctcaggaaat gcgaggtcaa
    20161 acggataaat tctgcgtcat taccataaag gtaggcaact ttggagcgga aaaaatatag
    20221 gaaagtgagt gttaggactg caaaaccaag tgcaaccaag cgtcctagac ggctgtaggc
    20281 tttcacatcc tgtggtcgtt tagcccctac ttcataagca atgacaatag ctagggctga
    20341 agaaactgag gcaggaaagg catataataa tgtcgcaaag ttcatagctg actggtgggc
    20401 tgctataatc tgtgctgaaa attttgccat gtagagccct actactgcaa aaattgctac
    20461 ttctgcaaag acttgtaaac cgatgggaag accgattttc aaaccttcct tcaataaaga
    20521 aaggtcaatc ggactccact gccaaatctg ataagatgca atagtcttat ttttgcacat
    20581 gacaatgacg attactagca ataccgccca gtaagctaaa gcagtaccca atccagctcc
    20641 agctccgccc agggccggta ggcccatttt cccataaatt aagagatagt taaatagact
    20701 gttaaatggg acaaggagca acatgaggta catggatagc tgagtcaaac cgagagcgtc
    20761 gaaaaaagag cgacagacac taaagagcaa gagaggcagg atgccaatgg aaataaaata
    20821 gaggtactgc cgaccaactt gaaaaataga ttcatcaagt ccaaactgag ccaaggcggg
    20881 aacagcgata aataggaccg agcacaagag taaaatggtt aatccgatgg ctagatagac
    20941 aaactgatga aattcctcac gaatcttatc tctttcacct tttcctaaat attgagcgat
    21001 gattgggacc aacgcagata caatccctgt tagaaatgaa aaaagcggat tccaaagact
    21061 tgttgccatg gaaacacctg ccaaatccat ggtactatac tgaccagtca tcatagtatc
    21121 aatgaaggag gctgaataat tagcaaattg ataaattaaa ataggcaaaa atattttgat
    21181 aaagagccag agcttctctt tgttatttct tgtttggtac atacttattc tctttcaatt
    21241 ttatataaat attgtaacaa gaaaaggacc tgcattgcaa gtcctctttg actagataga
    21301 gtcaccattc cagatagagt ttttcacgat aacatagtcc acatgcttca agctggtaat
    21361 gtcacgtcct cctgcataag aaatagatga ctgcaaatct tgctccattt caaccagagt
    21421 atctttcaaa tgtcctttgg cagggagtaa gattttctta ccttctacgt ttttataggc
    21481 acctttttgg tattcagatg cagaaccgta gtactctttg aatttctcac cgtcaacttc
    21541 aattgtttta cctgggcttt caatgtgacc ggcaaagagc gaaccaatca tgaccatgct
    21601 tgcaccgaag cggatggatt tggcaatatc tccgtgggta cggatacctc cgtccgcaat
    21661 aattggttta cgggcagctt ttgcacacca acgaagggct gccaactgcc aaccacctgt
    21721 accaaaacca gtcttaacct ttgtaataca tactttacct ggaccaatac caacttttgt
    21781 cgcatctgca ccagcatttt ctagttcacg aactgcttct ggagtaccga cattacctgc
    21841 aatgacgaac gtctcaggca gttctttctt gatatgttgg atcatcttga taacactttc
    21901 tgcatggcca tgagcaatat caatggtgat aaactcaggg gcatcagctt tcaagctagt
    21961 cacaaactca tattcatatt cttttacgcc aacagagata gaagcaatca aaccttgctc
    22021 gtgcatgcgt ttgataaatg gaatacgacc agcttcatcg aaacgatgca tgatgtagaa
    22081 ataaccatct ttggcaagca tttctgccac atcttcatca ataatagtct gcatattagc
    22141 tggaacaact ggtaatttaa agctatattt cccaagagtc actgttgtat ctgcctctga
    22201 acggctattg atgatacatt tatttggaat gagctgaata tcttcgtagt caaaaactgg
    22261 agtttcgttg aacatgcttc tacctctttt tcttaacgtt ggaacagaaa aacggtttgt
    22321 ttttcgtatt ttttccttat tacaagatat agtatagctt attgtttgtg ttttgtcaat
    22381 aaaaaagaaa cctatctaga caatat
//
LOCUS       DASGBY010000019        21557 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.019, whole genome shotgun sequence.
ACCESSION   DASGBY010000019 DASGBY010000000
VERSION     DASGBY010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21557
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.019"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            67..2334
                     /locus_tag="U1396_000573"
     CDS             67..2334
                     /locus_tag="U1396_000573"
                     /EC_number="3.4.14.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidyl-peptidase"
                     /protein_id="HEM5341783.1"
                     /translation="MRFNQFSFIKKETSVYLQELGALGFQLIPNVSSKTNLETFVRKC
                     HFLTANTDFALSNMIADWDTDLLTFFQSDRELTDLIFYQVAFQLLGFVPGVDYTDVMD
                     FVEKSNFPVIYGDTIDNLYQLLATRTKSGNTLIDQLVSDDLIPEDNHYHFFNGKSLAT
                     FSTKNLIREVVYVETPVDTAGTGQTDIIKLSILRPHFDGKIPAVITNSPYHQGVNDVA
                     SDKALHKMEGELAEKQVGTIQVKQASITKLDLDQRELPVSPSTEKLGHITSYSLNDYF
                     LARGFASLHVSGVGTLGSTGYMTSGDYQQVEGYKAVIDWLNGRTKAYTDHTRSIEVKA
                     DWANGKVATTGLSYLGTMSNALATTGVDGLEVVIAEAGISSWYDYYRENGLVTSPGGY
                     PGEDLDSLTALTYSKSLQAGDFLRSKEAYEKGLAAERAALDRTSGDYNQYWQDRNYLL
                     QADKVKCEVVFTHGSQDWNVKPIHVWNMFHALPSHVKKHLFFHNGAHVYMNNWQSIDF
                     RESMNALLSQKLLGYENNYQLPTVIWQDNSGEQTWTTLDTFGGENEAVLPLGTGSHTI
                     ANQYAQEDFDRYGKSYPAFHQDLYAGKGNQVSIDLPVTEDLLLNGQVTLKLRVASSVA
                     KGLLSAQLLDKGNKKRLAPIPAPKARLSLDNGRYHAQENLLELPYVDMPQRLVTKGFM
                     NLQNRTDLMTVEEVVPGQWMNLTWKLQPTIYQLKKGDVLELILYTTDFECTVRDNSQW
                     QIHLDLSQSQLILPH"
     gene            complement(2614..5022)
                     /locus_tag="U1396_000574"
     CDS             complement(2614..5022)
                     /locus_tag="U1396_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5341784.1"
                     /translation="METANKKFRYSIRKFKVGVGSVLIATCLLGAGVSTPTAFATTET
                     STATQVEAAQPTSETEPTVQITGTVSTENTNSESKVAPEVKEEAPVAEKAETATNSAE
                     QNVVSEPEKSEEPTPAPAALTSEAKEEVSENTEVKSAPLPQFQDILKELERDLEELKV
                     FRDYTGSDYSFQKGLWTYLLEDGQKLMSYVQTLEKDSPKIKENYDKLLDFKNHIRMER
                     LTRQVVPYLEKYSGNEFIRSEYREHLEQSEENGSYASQEGKVFEAYVDSAEQAFDRIV
                     NRVNELESKNLQKKVPDTAPKVAEKPKLDFKVQTRTTYQFLDFKTKEQEDPNLPLGEK
                     VERQKGERGEESETYQDVIVGDKIVASTLISKKRKDPVDHLIAKGTLVEKHPDTAPTA
                     PEKPKLDFTVKERVEREILDYMVEEQDDASLPLGQTKVLREGQKGELVKKYQDVIVEG
                     KVIESKLLSEDRKTPVNRLIAKNILVEKHPDTAPTAPEKPKLDFTVKERVEREILDYM
                     VEEQDDASLPLGQTKVLREGQKGELVKKYQDVIVEGNVIASNLLSEDRKAPVNRLIAK
                     GTLVEKTPDAPAPKAEEEVPAPTPMPETPMDKPKTDKVESDKQMPEAKQPEMEQPKAE
                     DMPKAEQPKAEDSAPKTAVPEVAPKTAEKPKLDFTTKERKVEEALPIKEEIRYDASLA
                     LGKSYLLQEGKAGKKVSVYQDVIVDGKIVATNLLSETVVEGQNRILVKGSLEMKKEEV
                     KSTPSVQSNLTLSHKGAPSANKATLPATGEQRNNLALVGLGLAGISLAVVATAINKKS
                     KDQI"
     gene            complement(5152..6321)
                     /locus_tag="U1396_000575"
     CDS             complement(5152..6321)
                     /locus_tag="U1396_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM5341785.1"
                     /translation="MFRLAKEELEKLGAMITATEIYQQPGLWKEAHQLYFDQLEKIES
                     FLKSIKEKHDFVHVVFTGAGTSDFVGQSIANYLNQVNDLKHIRFSAIGTVELVSRPHD
                     YLQADLPTILVSFARSGNSPESVAAVEVAKQLVDKLYQVTITCAPEGKLALAAEGDVE
                     NLLLLQPAGSNDKGFAMTGSYSCMALTALLVFSPASQEEKAAWVEIIARLGQDVLDRE
                     DYVQDLINLDFERVIYLGSGGFYGLAHEAQLKILELTAGKIATMYESPLGFRHGPKSF
                     INEKTLIFLFASNDAYTRQYDVDLLNEVHGDGIAERIVALSADKLVGTEAANFVLAEG
                     GADLPDVFLTFPYILFAQTVSIMAAIKCNNLPDTPSPTGTVNRVVQGVIIHPLEK"
     gene            6601..6900
                     /locus_tag="U1396_000576"
     CDS             6601..6900
                     /locus_tag="U1396_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEM5341786.1"
                     /translation="MMNMQNMMRQAQKLQKQMEKSQAELAAAQFTGSSVQDLVTATFT
                     GDKKLVSIDFKADVVDADDIETLQEMTVQAVNAALTKVDEATQKKLGAFAGKLPF"
     gene            complement(6940..8700)
                     /locus_tag="U1396_000577"
     CDS             complement(6940..8700)
                     /locus_tag="U1396_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM5341787.1"
                     /translation="MKKIQREFQKIYYNLDKILLLFFTLFTFMEFVWIPLNSWISEGL
                     LAMTGHAYLSPTNLLSVFAENLLVTGLFILLFFVNIAIAYLELALLFTGVWQLLDEKV
                     KHLPDYLRDVRDSMVAIIRHSSLPKVLFLLFYSVILLPFLRRVLNIYYFNKIVVPQFI
                     VDYLSNTVWLGILILIFLLLFFWLAARFMYALPNIYFEHRGVKESIAYSWEKTRGRKQ
                     IGSLFRLIWLITFPVLLFTGVGGLFYLVQLLAEHFVPSASYWLAVVCYALLKLAYYGV
                     VALFMMGFVSLLTGKQLPIYRRKRLRHHLRLAILLVSGLVFGTQGALALYFPFDTLPV
                     TISHRGVDDGNAVQNSIEALEKTSQLKPDYIEMDVQETKDGQFIVMHDTDLLALTGNP
                     GGTHDYTLAELTGMTASENGMVAPVPSFDEYLEKADELGQKLLVEIKVTKADSPKLTQ
                     NFLKKYGQRLIAKGHQMQSLDYRTIIEIKQYSEKLVSFFILPFNSIYPTTVADGYTME
                     YTSLDQNFMTKSWIRGKSVYAWTPNEEESMTKMLLLQVDGIITDNMTDLQSLMEEMKE
                     NRRYPDLFFQQFQSLIYNFE"
     gene            complement(8891..9817)
                     /locus_tag="U1396_000578"
     CDS             complement(8891..9817)
                     /locus_tag="U1396_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HEM5341788.1"
                     /translation="MRQTKEMRLVYSDFLAQVGQEDTTIAAIEADLSSSMATNKLSSV
                     LGGRYVNVGIMEQEMVGVAAGLSLLGYKPYIHTFGPFASRRVYDQVFISLAYAQLNAT
                     IVGSDAGVSAEMNGGTHMPFEELGLMRLIPKARVYEVSDDVLFQAVLKETIKVDGLKY
                     IRTIRKAPTPIYQGGEDFSKGYCVLRQGEDMTLLASGIMVEQALKAADQLEAQGVSVQ
                     VIDLFRIKPIHEDIPALLSGRPVLTVENHNRIGGLGSSICELMATDLTTPVHRIGIEE
                     SFGQVGQQAYLMDVYGLTAEYIVKQAQLMLQQ"
     gene            complement(9814..10662)
                     /locus_tag="U1396_000579"
     CDS             complement(9814..10662)
                     /locus_tag="U1396_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM5341789.1"
                     /translation="MTSGTADLKRFAKEIRYHTLATLNQLGFGHYGGSLSIVEVLAAL
                     YGEILDIRVQNFSSKERDHFILSKGHAGPALYSTLYLKGFFDRDFLLSLNQNGTHLPS
                     HPDRNLTPGVDMTTGSLGQGMSVATGVAYGKKIEQSPYYTYTLVGDGELNEGQCWEAA
                     QFAAHHELSKMILFVDDNKKQLDGRTHDICQTFDFVEKFQAFGWESVRVNGADIDAII
                     NAILTMKSSKSPQPKCIVLDTTKGQGVTFLEELESNHHLRLSGQLREDLEQVTLVLAR
                     ELEVTE"
     gene            complement(10664..12010)
                     /locus_tag="U1396_000580"
     CDS             complement(10664..12010)
                     /locus_tag="U1396_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HEM5341790.1"
                     /translation="MVLDFLIDIAKTPAILVALIAILGLALQKKPAADLIKGGLKTFV
                     GFIVVGGGANIIVGSLEPFGQMFEQAFNLKGVVPNNEAIVAMALDKYGTATSLIMLLG
                     MVFNIAIARFTRFKYIFLTGHHTLYMACMIAVIMSVAGFTSVGLIVMGGLALGLIMTL
                     SPAFVQKYMIQLTGNDHVALGHFSALGYWLSGVVGGLVGDKSKSTEDINFPKGLAFLR
                     DSTVSIAISMSLIYMIVALFAGGDYIKENLSGGTNSMIYALTLGGTFAAGVFVILSGV
                     RLILAEIVPAFKGISEKLVPNSKPALDCPVVYPYAPNAVLIGFISSFAGGIVSMIILA
                     LTGGVVILPGVVPHFFCGATAGVMGNASGGVRGAVCGAFMQGVLISFLPVFLLPVLGD
                     LGFAGSTFSDADFGLSGIFLGVLAKNGGILTVSVGIFAVLALMLGLSLVKKEQKEG"
     gene            complement(12064..12348)
                     /locus_tag="U1396_000581"
     CDS             complement(12064..12348)
                     /locus_tag="U1396_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5341791.1"
                     /translation="MLRIGTACGSGLGSSFMVQMNIESILRDLGVSDVHVEHYDLGGA
                     NPSEADVWIVGRDLADSATHLGDVRILNSIIDMNELRELVTAICQEKGLV"
     gene            complement(12350..14392)
                     /locus_tag="U1396_000582"
     CDS             complement(12350..14392)
                     /locus_tag="U1396_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5341792.1"
                     /translation="MVDNRTMAILMELFATRKESLYELSIQTGIEKEQLHSNLELVNQ
                     LLQEHSFPQIQYKDSEFVISTELYNQKESVFSLFRNRQIYLSQEERQLLIYLYTFIRK
                     EFVSNVHYQELLSVSRNTTLTDIKNVKELCLDFQVRLEYTRAKGYHLIGREEDKHRLA
                     LYALSNCLQSSIGVWALDYILKSWGEENPIEELKIVSQQACNYYKVSALEERLDEYLY
                     FLIFLFIRQARVGNRINWNFEGKGGFVKDFLQRLWKLLRLKSTSTLELNAATQEYLSH
                     LLQGCLEGESGEKDDLFYHLTVEIVEEMERLSLIAFEHRSEMIEGLQRHLIPAYYRLT
                     SRLVNVNSYTETIKEEHADLFYLVKKALRPLEEHLGFTIPDSEVSYFVIHFGGYIEAG
                     QQRSYRYRALVVCPNGVSSSLIVKENLRQLFPNIYFADTHSLQDWKMLDMTDYDMVFG
                     TIKLNIELPFFLVSQLMTSNHKKELFHLVNQHFPNAAYFPIEIEQLLSLVGKHATIHQ
                     EQALKYELVQFLNQRSHEQRGRSPMLEELITKETFQWSEEVLDWQKAVALVARPLVDK
                     GAIETRYIDAMIAKVEEFGPFIDLGKGIAIPHARPEDGVNEVGMSMLVLDKPVYLLDD
                     PSHEIRLFICIAAVDNQTHLRALSHLTKILRAEENIQQLVGAKEFADVQHLLKEEQ"
     gene            complement(14713..15207)
                     /locus_tag="U1396_000583"
     CDS             complement(14713..15207)
                     /locus_tag="U1396_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF536 domain-containing protein"
                     /protein_id="HEM5341793.1"
                     /translation="MGIEKTVSELAEILGVSRQAMNNRVKSLPEEFVDKNDKGVTVVN
                     RAGLIKLEEIYKTTIFEDEPISDEVKHRELMEILVDEKNAEIIRLYSQLKAKDKQLAE
                     KDEQLKVKDVQIAEKDKQLDQQQQLTLKAMADKEVLKLELDEVKAQAEEVQAKGFFAR
                     LFGK"
     gene            complement(15377..16777)
                     /locus_tag="U1396_000584"
     CDS             complement(15377..16777)
                     /locus_tag="U1396_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5341794.1"
                     /translation="MVTEQREYRFPEGFLWGSSTSGPQSEGSVAGDGKGWNNWDYWYS
                     QEPELFHQQIGLEQTSTFYEHFQSDLDLLVETGHSIFRTSIQWSRLIPEGIGEVNPQA
                     VEFYRAVFAGIRERGIKLLVNLYHFDLPYVLQEKGGWENKEIVWAYEAYARQCFSLFG
                     DLVDHWITFNEPIVPVECGYLGSYHYPCKVDAKAAVVVAYHTQLASSLAVRACHQLHP
                     YHKISIVLNLTPAYPRSQSPEDLQAARIAELFQTRSFLDPSVLGQYPRELVDILEKHG
                     LRPETTEEELTIIKENRVDFLGVNYYQPLRVQAPSEDGWNGEATFLSQYFQPYDKPDK
                     KINPHRGWEIYEEGLYDIAKNIQENYGNIEWLVTENGMGVEGEDVFEENGMIQDDYQI
                     HFMEDHLIQLHRGIDEGANCKGYMVWTFIDCWSWLNTYKNRYGLVSLDLQTQKRTVKK
                     SGYWFKQVSAKNGFIR"
     gene            17015..18190
                     /locus_tag="U1396_000585"
     CDS             17015..18190
                     /locus_tag="U1396_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5341795.1"
                     /translation="MNTVDTIIIGAGPAGMMAAISSSFYGKKTLLLEKNKRLGKKLSG
                     TGGGRCNVTNNGTLEDLLAGIPGNGRFLYSVFSQFDNHDIMNFFQENGVKLKVEDHGR
                     VFPTTDRSQTIIKCLEMKMLENGVDIRTGTEVVSIRKIDDLFHVKTSEETFTAPQLIV
                     TTGGKTYPSTGSTGFGHDIARHFKLEVTEIEAAESPVLTDFPHKKLQGISLDDVTLTY
                     GKHVITHDLLFTHFGLSGPAALRLSSFVKGGETAFLDALPTHSEQDLFEHLEANREKS
                     VKNALAELMPDRLADFFAENYNCKVKQVSPKDLTDLVTLLKALPIKITGKMSLAKSFV
                     TKGGVDLKEINPKTLESKKIPGLHFAGEVLDINAHTGGFNITYCLATGWVAGSSYSS"
     gene            18431..19123
                     /locus_tag="U1396_000586"
     CDS             18431..19123
                     /locus_tag="U1396_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341796.1"
                     /translation="MPINSFGQKIGMPLPHYSSGERPSLETIQGHTVRLEKLSLHHAD
                     DLYQFYGPSAKKTDWTYLPLEPFEDRATFQDYFQTLLNSTDPYYFAILDQATNQAVGT
                     FALMRIDTNHRTIEVGWVIFSPQLQRTRQATEAHYLLMTYVFEELGYRRYEWKCDSLN
                     QASRVAANRLGFTYEGNFRQALVYKERNRDTAWFSLLDHEWPDRKRALENWLKDSNFD
                     GQGQQKQPLSSF"
     gene            19204..19902
                     /locus_tag="U1396_000587"
     CDS             19204..19902
                     /locus_tag="U1396_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341797.1"
                     /translation="MQLKLSSVSKKFDHKIILEDTSFTFEQGKIYGLLGRNGAGKTTL
                     FNCIARNLTLDGGSIQFVKDEIAFDYDNTDIGFTQTYPQLPAFMTAYEFVRFYMDIHK
                     DKLKSPRSPEEWLNLVGIGEEDRHRLLKDFSHGMQNKVQLLLSLIVQPPVLLLDEPLT
                     SFDPVAAHEFKQLIREAKKDSVIIFSTHILQLAQDLCDEIVLLHHQELQAVPSDKLHD
                     PDFEQEVVTLLTAD"
     gene            19912..21537
                     /locus_tag="U1396_000588"
     CDS             19912..21537
                     /locus_tag="U1396_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341798.1"
                     /translation="MKTILRYFWYQEKYNLYRTVNGFFYYLRKLPLVGKSIPESIFKS
                     YSFKSGLFLILHVLSIPSRFLVKGIWLALNFYLASFWINLLSGGDLTFWNILPGTWLL
                     GFSLWMVFVGYTYRFGKGFEPFIVKSEREFMQNFGLSQSSFLQSQLFVEPIITSLFYL
                     PALLIFSGLSGNWLYLPLGLLTIPTGSFTGQALNRWFFNRRILSRRNSWQSWVILGTG
                     LAAIACLILFRNHLSPIFLLPVLVCQVLLIWFGYGYLKQQTNHLDYLYYCMDQSLQMD
                     KKIFEMTKGNEYTRQGLQMQAKLSMETGKDLTHLSGMTYLNALLFDRYRSVLTKKLHF
                     RLGCLLAIVLFIEGIRWFSKDDIQISNTNYIEGLPFAFMVMYAASMGKAVAQMVFVNC
                     DISMLHYPFYREAKTIIAGFHYRFLQTVKLNAAFSGSLLLALIIFTRAQLPIETYLLT
                     ALLLLSLTALFSFHDLFIYYILQPFTKDMEVVNPVYKFLSGALYWVAYLNIKLDLGSH
                     LYILLISIAMITYVSIGYWILLKKAPQTFRLKS"
BASE COUNT         6020 a         5079 c         4171 g         6287 t
ORIGIN      
        1 gacaaacact agcttatcag atataatagc tattatagac tattatccta aaaaagagga
       61 gaatttatgc gctttaatca attttctttt ataaaaaaag agacctccgt ctacttgcaa
      121 gagcttggtg ctctaggatt tcaactgatt cctaatgtaa gtagtaagac aaatttagaa
      181 acctttgtca gaaagtgcca tttcctgaca gcaaacaccg actttgccct gtcaaacatg
      241 atcgcagatt gggacacaga cctgctgacc ttcttccagt ctgaccgtga gttgacagac
      301 ctgattttct atcaagtggc ctttcagttg ctaggcttcg tgcctggtgt ggattataca
      361 gatgtcatgg atttcgtgga gaaaagcaat ttccctgtca tctatggaga tacgattgac
      421 aacctctatc aactgctggc tactcgtacc aagtctggaa acaccttgat tgaccagctg
      481 gtcagcgacg acctgattcc agaggacaat cactaccact tcttcaacgg taagtcacta
      541 gcaacctttt caaccaaaaa ccttattcgt gaggtggtct atgtcgaaac gcctgtcgat
      601 acagctggga ctgggcagac agacattatt aagctgtcca ttctccgtcc gcactttgac
      661 ggaaaaattc ctgcggtgat tacaaacagt ccttatcatc agggagttaa cgatgtagcc
      721 agcgacaagg ccctgcataa gatggaaggg gaactggctg aaaaacaagt tggtaccatt
      781 caggtcaagc aggccagcat caccaagtta gacttggacc agcgcgagct ccctgtcagc
      841 ccttccaccg aaaaactggg ccacatcact tcatactccc tcaatgacta ttttcttgct
      901 cgtggtttcg ccagcctcca tgtgtctggt gtcggtacgc tgggctcgac gggctacatg
      961 acatctggcg actaccaaca ggtggagggc tataaagcgg tgattgactg gctgaacggt
     1021 cgcaccaagg cctacacaga ccacacccgc tcgattgagg tcaaggccga ttgggccaat
     1081 ggtaaggtgg cgacgacggg actgtcttac ctcggcacca tgtccaatgc cttggcaaca
     1141 actggcgtgg acggtttgga agttgtcatc gcagaagcag ggatttcctc ttggtatgac
     1201 tactaccgtg aaaacgggct ggtgaccagc cctggcggct atccgggcga ggacctggac
     1261 agcttgactg ccctgaccta ctcgaaaagt ctgcaagcag gggatttcct ccgcagcaaa
     1321 gaagcctacg aaaaaggcct ggctgccgaa cgagctgccc tagaccgcac cagcggtgac
     1381 tacaaccaat actggcagga ccgcaactac ctgctccagg ctgacaaggt caagtgcgag
     1441 gtcgtattta cccatggctc acaggactgg aatgtcaagc caatccacgt ctggaatatg
     1501 ttccatgccc tgccaagtca cgtcaaaaag cacctcttct tccacaacgg tgcccacgtt
     1561 tatatgaaca actggcaatc catcgacttc cgcgagtcca tgaatgcctt actcagccag
     1621 aaattgctag gctacgagaa taactatcaa ctaccaactg tcatctggca ggacaacagc
     1681 ggtgagcaaa cttggacgac cttggacacc tttggcggtg aaaacgaggc tgtcttgcca
     1741 ctaggtactg gaagccatac cattgccaat cagtatgccc aagaagattt tgaccgctac
     1801 ggcaaatcct accctgcctt ccaccaagac ctctatgcag gcaagggcaa ccaagtcagc
     1861 attgacctgc ctgtaacaga ggacctcttg cttaacgggc aggtcacgct gaaactccgt
     1921 gttgcttcta gtgtagctaa aggtctctta tctgctcagc tattggacaa gggaaataaa
     1981 aaacgcctag ccccaatccc tgcgcctaaa gcaagattga gtctagacaa cggtcgttac
     2041 catgcccaag aaaatctgct ggagttgcct tatgtggata tgccacaacg cttggtaacc
     2101 aagggcttta tgaacctgca aaaccgcacc gacctgatga ctgtcgagga agtggtgcct
     2161 ggacagtgga tgaatctgac ctggaaactg cagccgacca tttatcagct gaaaaaaggc
     2221 gatgtcttgg agttgattct ctatacaacc gactttgagt gtactgttcg ggataattct
     2281 caatggcaaa tccaccttga tttaagtcaa tcacagttaa ttttaccgca ctaatactca
     2341 atgaaaatca aaatcagact agtttcaaag gtttgggaaa cctttgaagg ttggagatag
     2401 agtgaacgaa gttcgtttct ccaagagcag atatacccct gctactttct tattttatgg
     2461 tagcaggctg tcaagctcca ctggagcttg acactcatca aatcaagtca acaacgtctg
     2521 attttgagtt tcgaagagta taatattgat tttcagttct aaaaagaggc tgggcgtttc
     2581 cgccctgcct ctttattgat atttcataat ggtttagatt tgatctttag attttttgtt
     2641 tatagctgta gcgactactg ccaagctaat tccagctaaa ccaaggccta ctaaggctag
     2701 gttattgcgt tgttcacctg ttgcaggtag ggttgctttg tttgcagaag gtgcgccctt
     2761 atgactcagt gtcagatttg attgtactga aggagttgat tttacttctt ctttcttcat
     2821 ttccaagcta ccttttacaa gaatacgatt ttgaccttca acaacagtct ctgacaatag
     2881 gttggttgca acaattttac catcaactat gacatcttga taaacagata cttttttacc
     2941 tgcttttcct tcttgaagaa ggtatgattt gccaagcgct aggcttgcat catatctgat
     3001 ttcttctttg atagggagag cttcttctac cttgcgttct tttgttgtga agtctagctt
     3061 tggtttttcc gctgtttttg gtgcgacttc tggaactgct gtcttaggtg cagagtcttc
     3121 cgcttttggt tgctcagcct ttggcatgtc ttctgctttc ggttgctcca tttctggttg
     3181 cttagcctct ggcatctgtt tgtcagactc tactttatca gttttcggtt tgtccattgg
     3241 agtttctggc attggagttg gggctggaac ttcttcctct gctttcggcg ctggagcatc
     3301 tggcgttttt tccactaaag tgccttttgc aatcagacgg ttgactgggg ctttacggtc
     3361 ttctgaaaga agattacttg ctatgacatt cccttcaaca atcacatctt ggtatttctt
     3421 aaccaattct cctttctgac cttcacgaag tacctttgtt tgaccgagtg gcaaactagc
     3481 atcatcttgt tcttcaacca tataatctaa aatttctcgc tctactcgtt ctttaacggt
     3541 aaagtctaat ttaggttttt caggagctgt cggtgctgta tcaggatgtt tctctactaa
     3601 aatgtttttt gcaatcagac ggttaactgg ggtcttacgg tcttctgaaa gaagtttact
     3661 ttcaatgact ttaccttcaa caatcacatc ttggtatttc ttaaccaatt cacctttttg
     3721 accttcgcga agaacctttg tctgaccaag tggcaaacta gcatcatctt gttcttcaac
     3781 catataatcc aaaatttctc gctctactcg ttctttaaca gtaaagtcca attttggttt
     3841 ttcaggagct gtcggtgctg tatcgggatg tttctctacc aaagtacctt tagcaatcag
     3901 atgatcaact ggatctttac gttttttgga aatgagggta cttgcaacaa ttttatcccc
     3961 aacaatcaca tcttggtaag tctcagactc ttcgcctctc tcaccttttt gtcgttccac
     4021 tttctcacca agtggcaagt ttggatcttc ttgctctttc gttttgaaat ctaaaaattg
     4081 atatgttgtt cgtgtttgaa ctttaaaatc tagttttggt ttttcggcta ctttaggcgc
     4141 tgtatcagga actttctttt ggaggttctt gctctctagc tcgttgactc tgtttacaat
     4201 tctatcaaat gcttgttctg cactatcaac atacgcttca aaaacttttc cttcctgact
     4261 agcataacta ccattttctt ctgattgttc taagtgctct ctgtattcac ttctaataaa
     4321 ctcattacca gagtactttt caagatatgg aacaacttga cgtgtcaaac gctccatcct
     4381 gatatggttt ttaaagtcga gtaatttatc ataattttct ttgattttag gactatcttt
     4441 ctcaagggtt tggacataac tcattagttt ttgcccgtct tctaaaaggt atgtccatag
     4501 tcctttttga aatgaataat cagagccagt gtagtctcta aataccttta attcttccaa
     4561 atctcgttct aactctttta gaatatcctg aaattgtgga aggggagcag acttaacttc
     4621 ggtattctct gatacttctt ccttagcttc gcttgtgagg gctgctggag caggagttgg
     4681 ttcttctgat ttttcaggtt cagagactac attttgttct gcagagttcg ttgctgtttc
     4741 ggctttttca gcaactggcg cttcttcctt aacttctggc gcaacttttg attcagaatt
     4801 tgtattctct gtacttactg ttccagtaat ctggactgtt ggctctgttt cactcgttgg
     4861 ctgagctgct tcaacttgag tagctgttga agtctctgtc gtcgcaaaag cggttggtgt
     4921 cgagactccc gcaccaagta agcaagtagc aatcagcacc gagcctacgc cgactttaaa
     4981 tttacgaata ctatatctga attttttatt tgcagtttcc atttctatca ttcctaatta
     5041 tattttatta tatagaatca ttataccacg atattcgagt gactagatgt gttttttatg
     5101 tgttaaaact ctactgaata gctccgtttc ttcatcgttg aatgcatctg cctatttttc
     5161 taaaggatgg atgataacac cttgcaccac acggttgacg gtgcctgttg gtgatggtgt
     5221 atctggcaag ttgttgcact taatggctgc catgatggat accgtttggg caaagaggat
     5281 gtaagggaag gttaggaaga catctggcag atctgctccg ccttctgcca agacaaagtt
     5341 ggctgcttct gtaccgacta acttatcagc cgacaatgcc actatccgct ctgctatgcc
     5401 atcaccatga acttcattaa gcaagtccac atcatactga cgagtgtagg catcgtttga
     5461 ggcaaagagg aaaatcaagg tcttttcatt gatgaaggat tttggtccat gacggaaacc
     5521 gagtggtgac tcgtacatgg tcgcaatctt acctgctgtc aattccagaa ttttcaactg
     5581 agcttcgtgg gcaagaccat agaaaccacc tgaaccgagg taaatcactc gctcaaaatc
     5641 aagattaatc aagtcttgca cgtagtcttc acggtccaaa acatcttgac ccagacgggc
     5701 aatgatctca acccaagcag ctttttcttc ttgactggct ggcgagaaga cgaggagggc
     5761 tgtcagagcc atacagctgt aagaacctgt catggcaaag cccttatcgt ttgaaccagc
     5821 tggttgcaag agtaggagat tttcaacatc tccttcagcc gctagtgcca gcttgccttc
     5881 tggtgcacag gtaatggtca cttgatacaa tttatctacc aattgcttgg cgacttcaac
     5941 tgctgccaca ctttctggtg aattgcctga acgggcaaag gacaccagga tggttggaag
     6001 atcagcttgt agatagtcat gtggacgact aaccagctcc actgtaccaa tggcagaaaa
     6061 acgaatgtgt ttcaagtcat tgacttggtt gaggtagttg gcaatacttt gcccaacaaa
     6121 gtcagaagtc cctgcacctg taaaaacaac gtgaacaaag tcatgttttt ccttgattga
     6181 ttttagaaaa ctctcgattt tttccaattg gtcaaaatag agttgatgcg cttccttcca
     6241 taagcctggc tgttggtaaa tttcggtcgc cgtaatcata gctcccagct tttcaagttc
     6301 ttcttttgct aaacggaaca tagctcttcc tccgtgattt ctggttataa ccagtttttt
     6361 tcttatatta tagcgaattt acccctcaaa gtcaatttaa aatagattaa tatgtcaaat
     6421 ttatatccga tattgccgac tagaacttat tttgagaagg tagcattatc tacataaaac
     6481 atgttataat atttactaca cctctgcctt tgaaaatttt taacaataag gcaaaataag
     6541 gcaaggaaaa attacaaaca aggtctaaac ccttgatacg aaaggaatct taaaaatctt
     6601 atgatgaata tgcaaaacat gatgcgccaa gctcaaaaac ttcaaaaaca aatggagaag
     6661 agccaagctg agttggctgc tgctcaattt accggtagct ctgtacagga cttggttact
     6721 gctactttta ctggcgacaa gaaattggtt tctattgact tcaaggctga cgttgtagat
     6781 gcggatgata ttgaaactct gcaggaaatg accgtccaag ccgtcaacgc tgcacttaca
     6841 aaagtcgacg aggcgactca gaaaaaacta ggtgcctttg caggtaaatt gcctttttaa
     6901 aaagaaaacg cgattggata ctctcctctc gcgatttttt tattcaaaat tataaatcaa
     6961 agactgaaat tgctggaaaa agaggtctgg atagcgtcga ttctctttca tttcctccat
     7021 cagactttgg aggtcggtca tgttgtcagt gatgataccg tccacttgta gcagcaacat
     7081 cttggtcata ctctcttctt cattcggtgt ccaagcataa accgacttcc ctcgaatcca
     7141 agacttggtc ataaaatttt gatccagcga agtgtattcc attgtataac catcagcaac
     7201 cgtcgtcgga taaattgaat tgaacggaag aataaagaag gatactaatt tctcgctata
     7261 ctgctttatt tcgataatag tacggtaatc taatgattgc atctggtgtc ctttggcaat
     7321 caaacgttga ccgtattttt ttaagaaatt ctgggtgagt tttggcgaat ctgccttggt
     7381 cactttaatt tctaccaata atttctgtcc cagctcatcc gctttttcaa gatattcatc
     7441 aaaagaagga actggagcta ccatgccgtt ttctgatgca gtcatccctg tcaactctgc
     7501 aagagtatag tcatgtgtac ctccgggatt gcccgtcaaa gccaataaat ccgtatcatg
     7561 catgacaata aactgaccat ccttcgtctc ctgaacatcc atctcaatat aatctggctt
     7621 gagctgagag gttttctcta gggcctcgat agagttctgg acagcattgc cgtcatcgac
     7681 acctcggtga gaaatggtaa ccggcagagt gtcaaaggga aagtagaggg caagcgctcc
     7741 ttgggtaccg aacaccagac cagatacgag caaaatggct agtcgaaggt gatgacggag
     7801 gcgtttacgg cggtagattg gtagttgttt tcctgttagg aggctgacaa atcccatcat
     7861 gaagagtgca actactccgt agtaggctaa ttttagaagt gcgtaacaga caactgccag
     7921 ccagtaagaa gcacttggta caaaatgctc tgctaacagt tgcacaagat agaatagtcc
     7981 tcctactcct gtaaatagga gaactggaaa agtaatcaac caaattagac ggaacaatga
     8041 accgatctgc tttctgcctc tggtcttctc ccaagaataa gcgatagact ccttcacacc
     8101 cctgtgttca aaataaatgt ttggcagagc gtacatgaag cgtgccgcaa gccagaagaa
     8161 caagaggagg aaaatcaaaa tcaatattcc tagccagact gtgttggata ggtaatctac
     8221 gataaattgg ggcactacga ttttattaaa ataatagata tttaatactc ggcgtaaaaa
     8281 tgggagaaga ataactgagt aaaagagcag aaatagaacc tttggtaggc tgctgtgacg
     8341 gataatcgcc accatactat ctcgtacatc ccgtaaatag tcggggaggt gcttgacttt
     8401 ttcatccaac agttgccaaa cccctgtgaa caatagagct aattctagat aggcaattgc
     8461 aatgttgaca aaaaagagga gaataaacaa gcctgtcacg agtagatttt cagcaaacac
     8521 cgacaacaaa ttcgtcggtg aaaggtaggc atgccctgtc atagctaaga gtccctcaga
     8581 aatccatgaa ttgagcggta tccaaacaaa ttccataaag gtaaacaggg taaagaagag
     8641 caagagaatc ttgtctaggt tgtaatatat tttttgaaat tcacgttgta tctttttcat
     8701 gattctagtg tcccatattc ttgcaagaat tgcaagcctt catcaaggat ggaagattgt
     8761 gaaagcaatg aatgaagtat agaaaaaatc aagttcctaa gtggagcttg atttcttaca
     8821 tttgatttgc tttcctattt ccaagccaaa gtaaatcgaa aggctacata aaatacgaat
     8881 cactatctca ctattgttgt aacattaatt gtgcttgttt aacaatatat tctgctgtca
     8941 aaccatatac atccattaag taagcttgtt gcccaacttg accaaaagat tcctcaatac
     9001 caattcgatg tactggggtc gttaaatctg tagccattaa ttcacaaatg ctactaccta
     9061 ggccaccaat tcgattatga ttttctacag ttaatactgg ccttcctgat aatagagctg
     9121 gtatgtcttc atgaattggt ttgatacgaa aaagatcaat gacttgaaca gatactcctt
     9181 gagcctctaa ctgatccgcc gcctttaatg cctgctctac cataatacca ctcgcaagca
     9241 aggtcatatc ctccccttgc ctaaggacac agtagccttt gctaaaatct tctccacctt
     9301 gataaatagg cgttggcgct ttccgaatgg tacgaatgta cttcaacccg tctaccttga
     9361 tggtttcttt aagaacagct tgaaacagga catcgtcact gacctcataa acacgcgctt
     9421 ttggaatgag ccgcattaag cccagctcct caaacggcat gtgagtccca ccattcatct
     9481 ccgctgatac ccccgcatcc gaccctacaa tcgtggcatt gagctgggca taagctagag
     9541 agataaacac ctgatcatag actctacgac tagcaaatgg tccgaaggta tgaatgtatg
     9601 gcttgtatcc tagaagagat aatccagctg ctacccctac catttcctgc tccatgatac
     9661 ctacattgac atagcgtccc cccagaacag aggacaattt gttggtagcc attgaactgg
     9721 ataaatctgc ttcaatagct gctatggttg tgtcttcctg ccctacctga gctagaaaat
     9781 cactataaac cagtcgcatc tcctttgtct gtctcattcc gtcacctcca actctctcgc
     9841 taaaacaagt gttacttgct ctaaatcttc ccgtaattga cccgacaaac gcaaatggtg
     9901 attgctttct aattcttcta agaaggtaac tccctgcccc ttagtagtat caagaacgat
     9961 acattttggt tgaggagact tacttgactt cattgttaga atagcattta taatagcatc
    10021 tatatcggca ccattcacac gcactgattc ccaaccaaaa gcctgaaatt tttcaacaaa
    10081 atcaaaggtt tggcaaatat catgggtacg accgtctagt tgttttttat tgtcatccac
    10141 aaacagaatc attttcgata gttcgtggtg ggctgcaaac tgagctgctt cccagcattg
    10201 accttcattc aattccccgt cccctaccag agtataggta tagtacggtg actgttctat
    10261 cttcttacca taagcaacac ctgtcgcgac actcatccct tgccccaacg aacccgttgt
    10321 catatccacc cctggcgtta agtttcggtc agggtgtgaa ggcaaatgtg ttccattttg
    10381 atttagcgac aagagaaaat ctctatcaaa gaagcctttc aaatacaacg tactataaag
    10441 tgctggacct gcatgtccct tagacagaat aaagtgatcc cgctccttag aagagaaatt
    10501 ctggacacga atgtccagaa tttctccata tagagcagcc aacacttcta cgattgataa
    10561 gctaccacca taatgaccga atcctaattg attcaaagtc gccaaggtat ggtagcgaat
    10621 ttctttggca aatcgtttca aatcagctgt accactagtc atattatcct tctttctgtt
    10681 cttttttcac caatgacaat ccaagcatca aagccaagac agcaaagata ccaaccgaaa
    10741 ctgtgaggat accgccattc ttagctagca ctcccaggaa aataccagaa agaccaaagt
    10801 ctgcatctga gaaagttgaa ccagcaaaac caaggtctcc caaaacagga agtaagaata
    10861 caggtaagaa actaatgaga accccttgca taaaagcacc acaaactgcg ccacgaacac
    10921 cacctgacgc atttcccatg acccctgcag ttgctccaca gaagaagtgt ggtacgacac
    10981 ctggaaggat aacgacaccg ccagtcaagg caagaataat catgctgaca ataccacctg
    11041 caaaactaga gataaagcca atcaacacgg cgtttggtgc ataaggataa acaactggac
    11101 agtctagggc tggtttggaa ttcggaacca acttctctga aattcctttg aaggctggaa
    11161 caatttccgc taaaattaag cgtacaccag ataagataac aaaaacacct gctgcaaaag
    11221 ttccacctag ggtcaaggcg taaatcatgc tgttagtacc accactaagg ttttccttaa
    11281 tataatcacc gcctgcaaac aaagccacaa tcatgtaaat caaggacata gaaatggcaa
    11341 tgctgacagt tgaatcacgc aagaatgcca aacctttagg gaaattaata tcctcagtag
    11401 acttagactt atcaccgacc aaaccgccta ctacaccact caaccagtaa ccaagtgcac
    11461 tgaagtgacc tagggcgaca tgatcatttc ctgtcaattg aatcatgtat ttttgaacga
    11521 aggctgggga gagtgtcata atcagaccta aagccaaccc acccatcaca attaggccga
    11581 cagaagtgaa tcctgcaaca ctcatgataa ctgcaatcat acaggccata tatagtgtgt
    11641 ggtgtcctgt caagaaaata tatttaaagc gtgtaaagcg agcaatagca atattgaaga
    11701 ccattccaag caacataatc aaggatgtag cagttccata cttatccaaa gccatcgcta
    11761 caatagcttc attatttgga acaacccctt tcaagttgaa agcttgttca aacatttgac
    11821 caaatggctc aagcgagcca acaataatat tcgctccgcc accaacaaca ataaaaccaa
    11881 caaaagtttt caagcccccc ttaattaaat ctgctgcggg ctttttctgt aaggctaaac
    11941 ctagaatagc aatgagagca accagaattg ccggagtttt agcaatatca atgagaaaat
    12001 ccaataccat tttctgtctc ctttataatt ttatctttgc gggtcatccc ctgtgtatac
    12061 gatttaaacc aaaccttttt cttgacagat agccgtgaca agttccctca actcattcat
    12121 atcaataata ctattcaata ttcgaacatc tcctaaatga gttgcagaat cagccaggtc
    12181 acgtccgaca atccacacat ctgcttcact cggattggca cctcctagat cataatgctc
    12241 cacatgaaca tctgatacac ctaaatctcg caaaatggat tcaatattca tttgaaccat
    12301 aaagctagag cctaaacctg aaccacaggc tgttccaatt cgtaacatat tactgttcct
    12361 cctttaataa atgttgtacg tcggcaaatt ctttggcgcc gacaagttgt tgaatatttt
    12421 cttctgctcg caaaattttt gtcaaatgcg agagtgctct gagatgggtt tgattatcca
    12481 cggctgcaat acaaatgaac agccgaattt catgactagg gtcatccaat agataaactg
    12541 gcttatccaa taccaacatt gacatcccta cctcattaac cccatcttct ggtcgtgcat
    12601 gtggaatcgc aattccttta cctaggtcaa taaaaggacc aaactcttct accttcgcta
    12661 tcatagcatc aatatatcga gtttctatag ctcctttatc taccagaggt cgtgcaacca
    12721 gggcaactgc tttttgccag tctaaaactt cctcagacca ttgaaaggtc tcttttgtaa
    12781 tcaattcttc taacatagga ctccttcccc tttgctcatg ggagcgttga ttgagaaact
    12841 gcaccaattc atattttaaa gcctgctcct gatgaatggt tgcatgtttc ccaacaagtg
    12901 ataataactg ctcaatctca atcggaaaat aagccgcatt tgggaaatgc tgattaacca
    12961 agtgaaataa ttctttttta tgattagagg tcatcagctg ggataccaag aaaaatggta
    13021 gttctatatt cagcttgata gttccaaata ccatgtcata gtctgtcatg tctagcatct
    13081 tccaatcctg taaggaatgg gtatcggcaa aatagatatt aggaaatagt tgccgtagat
    13141 tttcttttac aatcagcgaa gagctcactc cgtttgggca aacaaccaag gcccgataac
    13201 gatatgaacg ttgttgacct gcttcgatgt agccaccaaa gtggatgaca aaataagata
    13261 cctcactatc tggtatagta aaacctagat gctcttccaa aggtcgcaaa gcttttttta
    13321 caagatagaa caagtcggca tgctcttctt tgatggtttc agtatatgaa ttgacattta
    13381 ccaaacgaga tgttaaacgg tagtaagcag gaattaggtg acgttgcaaa ccttcaatca
    13441 tttccgagcg atgttcaaaa gcaattaagg acaaacgttc catctcttcc actatttcta
    13501 cagtcaagtg gtaaaataga tcatcctttt ctccgctctc accttctaag catccttgca
    13561 gtaaatgtga cagatactct tgtgtcgcag catttaattc taatgtgcta gtacttttta
    13621 aacgtaataa tttccaaagg cgttgcagaa aatcttttac aaaccctccc tttccttcaa
    13681 aattccagtt aatacggttg ccaacacgcg cctgacggat aaataaaaat atcaaaaaat
    13741 acaaatattc atccaatctc tcttctaaag ctgagacttt ataataattg caagcttgtt
    13801 gactcactat tttcaattct tcaataggat tttcctcacc ccaagattta agaatataat
    13861 ccaaagccca cacaccaatc gaagactgca aacaattact gagtgcataa agcgccaagc
    13921 gatgtttatc ttcttctcga ccaattagat gatagccttt cgccctcgta tattccaatc
    13981 gtacttgaaa gtccaagcaa agttccttta cattcttaat atccgtcaat gttgtgttac
    14041 ggctcacact caataattct tggtagtgaa cgtttgatac aaattctttt cggataaagg
    14101 tataaagata gataagaagc tgtctttctt cttgcgaaag atagatctgg cgattgcgaa
    14161 agagcgaaaa tacactttct ttttgattgt aaagctccgt agaaataaca aactcgctat
    14221 ctttgtattg tatctgcggg aaggaatgtt cttgcaacaa ttgattgact agttccaaat
    14281 tagaatgtag ctgctccttt tcaattcctg tttgaatact aagttcgtac aaactttctt
    14341 tccgagtcgc aaacaattcc atcagaatcg ccatggtacg attatcaacc atattttcct
    14401 ccttgtctta attgtatccc ttttcatttc tgatttctag agtctttgag cccaattaat
    14461 ataataaaaa atacaaattc aattgtgctc actacttaaa ctaaaaaaga ttggttccca
    14521 ccaatctttt tatatcacat gccatcttcc attttttagt gcgggctgaa acagtctatc
    14581 cctagactgt acctcgcttt cttatttcca agctcgggct gaaacagtct atccccagac
    14641 tgtttcactc ccccggacct ttattcgctc tcttgctttc aagctcatga taaaaaggtc
    14701 ccccggacct ttttatttcc caaacaaacg tgcaaagaag cctttagctt gcacttcttc
    14761 tgcctgtgct ttaacttcgt ccaattccaa cttgagaact tccttatcgg ccatagcttt
    14821 tagtgtcaat tgctgttgct gatccaactg tttatccttc tcagcaatct gcacatcttt
    14881 aaccttgagt tgttcatctt tttcggcaag ttgcttatct ttagctttta attgactata
    14941 taagcggatg atttcagcat ttttctcgtc aactaaaatt tccatcaatt cacgatgctt
    15001 gacttcatca ctaatcggct catcttcaaa aatggttgtt ttgtagattt cctccaactt
    15061 aatcaagcca gcacgattta caacggtcac acccttgtca tttttatcta caaattcttc
    15121 aggaagtgat ttgacacgat tattcatagc ctgccggctc actcctaaaa tttcagctaa
    15181 ctcactgact gttttttcga ttcccataat atcctcggta cttacatttc tcatagtttg
    15241 tatcattaaa atattaccac agaaccctat ccctgtcaaa tctaggggaa ttttcttacc
    15301 aagcattagt gaataatcac aaacctcaaa agcatcttat ctcaatgcaa tgttatgcag
    15361 aaacgaaata tacattctat ctaataaaac catttttagc actcacttgc ttgaaccaat
    15421 atccagattt tttgacagta cgcttctgag tttgaaggtc aagcgagacc aaaccgtatc
    15481 ggttcttata ggtatttaac caagaccagc agtcaataaa agtccagacc atataaccct
    15541 tacagttcgc tccttcatca atacctcgat ggagctgaat caaatgatct tccatgaagt
    15601 gaatctgata gtcatcctga atcatgccat tttcttcaaa aacatcctcc ccttcaactc
    15661 ccatgccgtt ctcagttacc aaccattcga tattcccata gttttcctgg atatttttag
    15721 caatgtcgta cagcccttct tcataaattt cccagcctct atggggattg attttcttgt
    15781 caggcttatc ataaggctgg aaatattggg ataggaaagt agcttctccg ttccatccat
    15841 cttctgaagg agcctgcacg cgcaggggct ggtaataatt cacccccagg aagtcaaccc
    15901 tattttcttt gataatggtc aattcctcct ctgtggtttc tggacgtaaa ccgtgttttt
    15961 caagaatgtc aaccagttcc ctcgggtatt gtcccaaaac agatggatcc aaaaagcttc
    16021 tcgtttgaaa tagctcagca atccgcgctg cctgtaaatc ctctggactc tgacttcttg
    16081 gataggcagg agtaagattg agaacaatgg aaattttgtg gtatgggtgt agttggtgac
    16141 aggcccgaac agccaaagaa ctagccagtt gagtatgata cgctacgacc acagctgcct
    16201 ttgcatccac cttgcaagga taatgatagc ttcctagata gccacattct actggaacaa
    16261 tgggttcatt aaaggtaatc caatgatcca ccagatctcc aaagagactg aaacactggc
    16321 gagcataagc ctcataggcc cagacaatct ccttattttc ccagccccct ttttcctgta
    16381 agacataagg caaatcgaaa tgataaagat tgaccaaaag ctttatccca cgctctcgaa
    16441 tacctgcaaa tacagcccta taaaactcca cagcttgcgg attgacctcg cctatccctt
    16501 ccggaatcag acgtgaccac tgtatagagg tgcgaaaaat actatgacct gtttccacca
    16561 acaaatccaa atctgactgg aaatgttcat aaaaagtcga tgtttgttcc agtcctattt
    16621 gctggtgaaa gagctcaggt tcctgactgt accagtaatc ccagttattc cacccctttc
    16681 catcaccagc tacgcttcct tcactttgag gacctgaagt ggaggagccc cacaaaaaac
    16741 cttctggaaa acgatactct ctttgctcag ttaccattct tctacctact ttctttcatg
    16801 ctacagacgg agttgttaga acctggattc acaatgcagc ttccacaaaa ttactttgct
    16861 tgtacataca ggctcctgat aaaaactaat ttcccttagt ttaagtatac tcccctaacc
    16921 cgtcaatggt cttccgcaat ctcaaggaaa aactccacaa atcatagcaa agactcaaac
    16981 tactttcttg atgaaaatat gatacaataa aggcatgaat acagtagata ccattattat
    17041 cggagcgggg cctgctggca tgatggccgc gatttcttcc agcttttacg gcaagaaaac
    17101 cctgctcctc gaaaaaaaca aacgtttagg caagaaactg tctggcacag gtggcggacg
    17161 ttgcaatgtg accaacaacg gcaccttgga agacctgctg gctggcattc ctggcaatgg
    17221 tcgctttctt tacagtgtct tttcccagtt tgacaaccac gacatcatga atttctttca
    17281 ggaaaatggg gtcaagctca aggtcgagga ccacggccgt gtctttccga ccaccgaccg
    17341 ttcccaaacc attatcaagt gcctggagat gaaaatgttg gaaaatggcg tggacatccg
    17401 tacagggacg gaggtggttt ccatccgcaa gattgatgac ctcttccatg tcaagaccag
    17461 cgaggagact tttacagctc cccaactcat tgtcaccacc ggcggcaaga cctatccttc
    17521 cactggctca accggctttg gacacgacat tgcccgccac ttcaagctgg aagtcacgga
    17581 gattgaagcc gctgaaagcc ctgttctgac tgacttcccc cacaagaagc tccaaggcat
    17641 ttccttggac gacgtcaccc tgacctacgg caagcacgtc atcacccacg acctgctctt
    17701 tacccacttt ggcctgtcgg gacccgctgc tcttcgcttg tccagttttg tcaaaggcgg
    17761 cgaaaccgca tttctcgatg ctctgccgac ccattctgaa caagatttgt ttgagcattt
    17821 agaagctaac agggaaaaat ccgtcaagaa cgcccttgct gaactcatgc cagaccgcct
    17881 agccgacttt ttcgcagaga actacaactg taaggtcaaa caggtctcac caaaagacct
    17941 gactgatttg gtcaccctgc tcaaagcctt acctatcaag attactggca agatgtcctt
    18001 ggccaagtcc tttgtgacca agggtggcgt tgacctcaag gaaatcaatc ccaaaacctt
    18061 ggaaagtaag aaaatccctg gccttcactt tgcaggtgag gtcttggaca tcaacgccca
    18121 caccggtggc tttaacatta cctactgtct ggcaactggc tgggtggctg gaagttccta
    18181 ctcttcgtaa atcaaactca gacgttgttg acttgatttg atgagtgtaa agctccagtg
    18241 gagctttaca gcctgctacc cgaaaataaa aggtagcagc gttctatcta catctaatgg
    18301 cacgaacttt gttcgcctta tttccaacct ccaaaggttc cccgaacctg tggaggtagt
    18361 ctgagttcga ttttctttga gtattgcact tttataaatc gctcttcaag ctcaacctaa
    18421 aggagaaacc atgcctatca attcattcgg ccaaaagatt ggtatgccct taccgcatta
    18481 tagtagcggt gagcgaccaa gtctggagac tatacaagga cacacagtcc gcttagaaaa
    18541 actgagcctg caccatgcag atgatctcta tcagttttat ggaccaagtg ccaagaaaac
    18601 tgactggacc tacttgcccc ttgaaccctt tgaggacaga gcgacatttc aggactattt
    18661 ccagactctt ttgaactcga ccgaccccta ttattttgcc atccttgacc aagcaaccaa
    18721 tcaggcagtc ggaacctttg cactcatgcg aatagatacc aaccatcgta ccattgaagt
    18781 tggctgggtc atcttttctc cgcaactgca acggacccga caggcgacag aagctcacta
    18841 tcttctcatg acctatgtat ttgaagaact tggctatcga cgctacgaat ggaaatgcga
    18901 ctcgctcaac caagccagtc gagtcgctgc caaccgtctg ggctttacct acgaaggcaa
    18961 cttccgtcaa gccctagtct ataaggaacg caatcgggat actgcctggt tttctctatt
    19021 agaccacgaa tggcctgacc gtaagcgtgc ccttgaaaac tggctaaagg atagtaactt
    19081 cgatggccag ggtcagcaaa aacaacccct atcctctttc taaattcaag caaaatatgc
    19141 ttgaattttt ttgttttttg ttgtatgata aaaccataac aatataacaa aaggagattg
    19201 gctatgcaac tgaaattatc ttctgtttcc aagaaattcg accataaaat cattttggaa
    19261 gatacttcct ttaccttcga acaaggcaag atttacggtt tgctagggcg gaatggggct
    19321 ggtaagacga ccttgttcaa ctgcattgcc cgtaatctga ccttggatgg tggctcgatt
    19381 cagtttgtga aggatgaaat tgcctttgac tacgataata cggacatcgg ttttacccag
    19441 acctatccgc aactacctgc ctttatgacg gcttacgagt ttgtccgttt ctatatggat
    19501 atccacaagg ataaactcaa atctcctcgt agtccagaag aatggctaaa cttggtcggt
    19561 atcggagaag aagaccggca ccgtctactc aaggactttt cccacgggat gcagaacaag
    19621 gtccagttgc ttctgtcttt gattgtccag ccacctgtcc ttctcttaga tgagccgctg
    19681 acttcctttg accctgtggc tgcccacgag ttcaaacagc tgattcggga ggctaaaaag
    19741 gattctgtta tcatcttttc cacccatatt ctacaactgg ctcaggatct ctgtgacgag
    19801 attgttttac tacatcacca agaactacag gctgttccga gtgacaagct ccacgaccct
    19861 gattttgaac aggaagtggt taccctcttg acagcagact aggagggact tatgaaaacc
    19921 attctacgtt atttttggta ccaggaaaag tataacctct atcggaccgt caacggattt
    19981 ttctactatc tgcgaaaact gccacttgtg ggcaagagca ttccagagag tattttcaag
    20041 tcttacagtt ttaagtctgg tctctttttg atcctgcacg tcctctccat ccccagtcgc
    20101 tttctggtca agggaatttg gttagccctg aatttctact tggcatcctt ttggatcaat
    20161 ctcctctctg gcggggattt gactttttgg aatattctac cagggacttg gcttttgggc
    20221 ttttctctct ggatggtctt tgttggctac acctatcggt ttggcaaggg ttttgagccc
    20281 tttatcgtca agtccgagcg ggaattcatg caaaattttg gactttccca gtctagtttt
    20341 ctccagagtc aactatttgt agaacctatt atcaccagtc tgttctacct gcctgccctg
    20401 ctgatttttt ctggcctatc aggaaattgg ctctatctgc ctctgggatt actgaccatt
    20461 ccgacaggaa gttttaccgg acaggctctc aatcgttggt tttttaatcg acggattcta
    20521 tcccgccgta attcttggca atcctgggtt atcttgggta ctggtctagc agcaattgcc
    20581 tgccttatcc ttttccgcaa tcatctgtcg cccatctttt tactgcctgt gcttgtctgt
    20641 caggtcttgc tcatttggtt tggctatggt tatttgaagc aacaaaccaa ccatctagac
    20701 tatctctatt attgcatgga ccagtccttg cagatggata agaaaatttt tgagatgacc
    20761 aaagggaacg agtacacccg acaaggttta cagatgcagg cgaaactgag tatggaaaca
    20821 ggaaaggacc tgactcatct gtcaggcatg acctacttaa acgctctgct atttgaccgc
    20881 tatcgttctg tccttacgaa aaaactgcac tttcgcttgg gttgtctttt ggctattgtc
    20941 ctttttattg aaggaattcg ttggttttca aaagatgaca ttcaaataag caataccaac
    21001 tatatcgagg gactgccttt tgctttcatg gtcatgtatg ccgcctccat gggtaaggct
    21061 gtcgcacaga tggtctttgt taattgcgat atttccatgc tccactatcc attttaccgc
    21121 gaagcaaaaa ccattattgc aggctttcat taccgttttc tgcaaactgt aaaattaaat
    21181 gctgccttct ctggatctct actattggcc ctcatcatct ttactagagc gcagctacct
    21241 attgaaacct atctcctgac tgctctgctc ctgctgagtc taacagccct attttccttc
    21301 cacgacctct ttatctacta tattctccaa ccctttacca aggacatgga ggttgtcaac
    21361 ccagtctata aatttctcag tggggctctc tactgggtgg cctatctcaa tatcaagctg
    21421 gatttaggca gtcacttgta catcctactc atttccatag ctatgattac ctatgtcagc
    21481 atcggctact ggattttgtt gaaaaaagct ccgcagactt tccgcttgaa atcataaaaa
    21541 atagcctctc gcaagag
//
LOCUS       DASGBY010000020        20942 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.020, whole genome shotgun sequence.
ACCESSION   DASGBY010000020 DASGBY010000000
VERSION     DASGBY010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20942
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.020"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            144..569
                     /gene="rplK"
                     /locus_tag="U1396_000589"
     CDS             144..569
                     /gene="rplK"
                     /locus_tag="U1396_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004226069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEM5341799.1"
                     /translation="MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNA
                     RTADQAGMIIPVVISVYEDKSFTFITKTPPAAVLLKKAAGVEKGSGTPNKTKVATVTR
                     AQVQEIAETKMPDLNAASLEAAMRMIEGTARSMGFTVTD"
     gene            610..1299
                     /gene="rplA"
                     /locus_tag="U1396_000590"
     CDS             610..1299
                     /gene="rplA"
                     /locus_tag="U1396_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEM5341800.1"
                     /translation="MAKKSKNLRAALEKIDSTKLYSVEEAVALAKETNFAKFDASVEV
                     AYNLNIDVRKADQQIRGAMVLPNGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVA
                     KINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGK
                     ITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVSITTTQ
                     GVGIKVDPNSL"
     gene            1404..1694
                     /locus_tag="U1396_000591"
     CDS             1404..1694
                     /locus_tag="U1396_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341801.1"
                     /translation="MKVAEKEELYKYLSAAYNLPQEAFSEALREKILEVAGQLDKEEN
                     LYILAGHLSRFINAELTALTCRAPKELVQLAHYLQEVQNHYRYASLFPGKVK"
     gene            1703..2491
                     /gene="yghU"
                     /locus_tag="U1396_000592"
     CDS             1703..2491
                     /gene="yghU"
                     /locus_tag="U1396_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HEM5341802.1"
                     /translation="MTEYTKPLVWKWEDENDNRSGNRPTAGSRFEQDLPKGEKSFQVY
                     SLGTPNGIKVAIMLEELKELGISEADYDLFLINIGQGDQFGSDFVAINPNSKIPAMVD
                     YSEQEPISVFESANILLYLAEKFDAFLPKTWAERTEVLNWLFWQTGAAPFVGGGFGHF
                     FHYAPTAQEYPINRYTMETKRQLDLLDKLLATREYIAGNTYTIADIAIWSWYGRLVQG
                     ELYPGSAEFLDVDSYKHLKTWVEKIAQRPAVQRGLTVKYHSIDN"
     gene            2746..4386
                     /locus_tag="U1396_000593"
     CDS             2746..4386
                     /locus_tag="U1396_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM5341803.1"
                     /translation="MSEKVEMQQSKEQATVARGLAWLTAGNILSRLLGVAYVIPWYIW
                     LGEYRAEANALFSMGYQIYANFLLISTAGLPTAIAKQVAKYNILGKEEVSLYLVREFF
                     KLMLVFGAVFAGVMYLSAPWLADASGSKEKLLPVMYSLVPPLFIFPAMSILRGFFQGR
                     HDMKPYAISQLAEQLVRVIWILAATFMIMKLGSGDYLEAVVQSTFAAFVGMIASVGIL
                     VYTLWKQGYLGKLLHAKKQKISLDTGQLIKETVRDAIPIIILGLTLQLLQFIDQVTFI
                     RVMERITDYSNSELLELYSYMAANPSKITMMIIGISLSLGSVAIPLITEKFVKKDLKA
                     ASHLVADNLQLLFIFTIPAIVGTVLLAGPLYTIFYGPSDPIAITLFIWNLFLILPLGL
                     YSVISVVIQAIFENRRAIYYFLIGMLVKIVLQVPMIYVFKVYGSFISTIFGLGIMLYL
                     FYRRIDKVLHIDERLVIKDIATISWISIVMGLIVWGIEFVLNLILPANGYVSSFIHLA
                     VAGGAGMLVFVILTLKTRQLDRLIGSRAQSLRRKLRLG"
     gene            4553..5287
                     /locus_tag="U1396_000594"
     CDS             4553..5287
                     /locus_tag="U1396_000594"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEM5341804.1"
                     /translation="MMKPKYERILIKLSGEALAGERGVGIDLKTVQEMAKEIQEVAES
                     GIQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLKQLGVDTRVQ
                     TAIAMQSVAEPYIRGRALRHLEKGRIVIFGAGIGSPYFSTDTTAALRAAEIEADAILM
                     AKNGVDGVYNADPKKDANAVKFNELTHREVISRGLKIMDATASTLSMDNDIDLVVFNM
                     NEPGNIKRVVFGEPIGTTVSNSSEEK"
     gene            5422..5979
                     /gene="frr"
                     /locus_tag="U1396_000595"
     CDS             5422..5979
                     /gene="frr"
                     /locus_tag="U1396_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006148672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEM5341805.1"
                     /translation="MSKEIIAKAQDRMNQSHQSLAREFSHIRAGRANASLLDRISVEY
                     YGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVI
                     PALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDI
                     QKVTDDAIKTIDKMTADKEKELLEV"
     gene            6111..6965
                     /gene="cvfB"
                     /locus_tag="U1396_000596"
     CDS             6111..6965
                     /gene="cvfB"
                     /locus_tag="U1396_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding virulence regulatory protein CvfB"
                     /protein_id="HEM5341806.1"
                     /translation="MNDLLAQYIVGLVTDENDQFYFVQKEGRTFALSKDEGEHSLGQS
                     VKGFAYTDMKQKLRLTTKEVGVSRTSFGWGTVTEVRKDLGVFVDTGLPDKQVVVSLDI
                     LPEIKELWPKKGDQLYVKLDVDKKDRIWALPAFQEDFQKMARPAYDNMQNQNLRAIVY
                     RLKMNGTFVYLPDNNMLGFIHPSERFAEPRLGQVLEARVIGYRAVDRTLNLSLKPRSF
                     EMLENDAQMILTYLESNGGFMTLNDKSAPEDIKATFGISKGQFKKALGGLMKAGKIKQ
                     DSFGTELV"
     gene            6975..7895
                     /locus_tag="U1396_000597"
     CDS             6975..7895
                     /locus_tag="U1396_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEM5341807.1"
                     /translation="MLVYIAGSGAMGCRFGYQLSKTNHEVILLDNWEEHIETILENGL
                     KVTGDVEETVYLHIMKPTEATREADFIILLTKADQLPKMLRDIKPIIGPTTKVLSLLN
                     GLGHATTMRRYVPDESIMVGVTMWLAGLKGPGHAHLEGPGSMSVQHILGDEQSVADII
                     EMLNEAGLNVTYDNHVVSAIWQKACVNGVMNPTCTILDCTIGELFGTEAGLNLVQGIF
                     KEFIAVAKSEADGIDEEAIWKYVIDASKKASNHYPSMHQDLVQHGRKTEIDYLNGAVV
                     FKGKRAGIPTPYCQMITDMIHAKESMLGLR"
     gene            7905..8360
                     /locus_tag="U1396_000598"
     CDS             7905..8360
                     /locus_tag="U1396_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEM5341808.1"
                     /translation="MLIEVETIEEYMAALPENRKEAVGRLHQVIVEQLPAGFEVGILG
                     GMINYYVPLTAYPDGYHCTPGEPLPFLALASQKAHIALYHMGIYMDQELNDWFVAAYQ
                     AQVPTKLDMGKSCVRMKNPKNIPYELIGELVSKMSMERYIELYEKNHRK"
     gene            8366..8581
                     /locus_tag="U1396_000599"
     CDS             8366..8581
                     /locus_tag="U1396_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HEM5341809.1"
                     /translation="MRRSFYSWLMTQRNPKSNEPVAILADYAFDESDFPKQSDNFDEV
                     SRFLEESASFAFSMSDFDAIWEDYLGH"
     gene            8660..9682
                     /locus_tag="U1396_000600"
     CDS             8660..9682
                     /locus_tag="U1396_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEM5341810.1"
                     /translation="MLEHSIDIQLKHPDDSFSLFGSNERHLRLMEQELGVVIHARTEK
                     VQVIGQEEHVEQARLVIQSLLVLVSRGLVINTPDVVTAISMAKNDEIEKFVALYEEEI
                     IKDNYGKPIRVKTLGQKLYVDSVKRHDIVFGIGPAGTGKTFLAVTLAVTALKRGQVKR
                     IVLTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYQILGKEQTTRLMEREIIEIAP
                     LAYMRGRTLEDAFVILDEAQNTTIMQMKMFLTRLGFNSKMIVNGDISQIDLPRKVKSG
                     LIDATEKLSKIPQIDFVHFSAKDVVRHPVVAQIINAYEEEARAADSRASFETIGEPSR
                     KYNGEE"
     gene            complement(10352..11500)
                     /locus_tag="U1396_000601"
     CDS             complement(10352..11500)
                     /locus_tag="U1396_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine methyltransferase"
                     /protein_id="HEM5341811.1"
                     /translation="MTTSRFQLVGSLLRPANLGEFKRQIEAREDIKYPFYDDFDGYKE
                     TEASLIQKIVAEQKENGLDIVTDGEFGRSMWHLDFLWGFDGIERYIAEHGYPFKDHDG
                     QIFETRKDIGLRITAPLSAKNHHFIDIFKQVKELAGETVTKQTIFGPAHAFNELTIFN
                     GQVGPNQVYKTHDELKAGLIAAYKEFLDQYKEAGGQIVQFDDCLWELFDPANPVPFLP
                     QDDSEALAALADEFVAINNAVIDYGHEIGLTVWRHNCRGNYESRSAAGGTYEAIAKKF
                     LRDQKYDRFFLEWDDERAGDLKALESLRDKNVEVVLGLLSSKTSDLDDEERVYKLLEE
                     ASKIIPKERLYLSHQCGFASCDSGNELAIPQQWAKIKQGQEIADKFWS"
     gene            11699..12865
                     /locus_tag="U1396_000602"
     CDS             11699..12865
                     /locus_tag="U1396_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5341812.1"
                     /translation="MKKQSPFIIAGIVMLGVVMRAPFTALPAILTDVAAGLGVEVSSL
                     GILTSIPLIMFALCSSLAPRLAAKFGMEKLMALVLLVMVLGSGIRVLNLPALYIGTML
                     VGATIAFINVLLPSLVAANFPKKIGLYTTIYITLMGVAATVASMIAVPIVSSSSWEFF
                     ILLITGLVFMAFLIWLPNVRNNHRFASENQGNQKSSIWKNKAAIAFLIFGGLQSVLYY
                     TEITWLPTISQSVGFSKAEAGLMAGFFNMTAIPMSMIIPAVLSRQTKEMRRNIMLAIS
                     SVTLLGLVMMVLIPTNLILWSALHIILSFSNAALFPYMMLSFTLKTSNSQATAQLSGM
                     VQTGGYLIAAFGPGLLGYSYPIFGNWMPLILALAIVTLAMMWTIVLIEKEDIIL"
     gene            complement(12964..13134)
                     /locus_tag="U1396_000603"
     CDS             complement(12964..13134)
                     /locus_tag="U1396_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003002781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3042 family protein"
                     /protein_id="HEM5341813.1"
                     /translation="MAKGFGKGFLTGVLSTVALAAGAVFTVHKTIIEPEEKKEAFIEE
                     NRKKAARRRVAH"
     gene            13203..14087
                     /gene="miaA"
                     /locus_tag="U1396_000604"
     CDS             13203..14087
                     /gene="miaA"
                     /locus_tag="U1396_000604"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEM5341814.1"
                     /translation="MKTKVIVVIGPTAVGKTALGIDLAQRYNGEIISGDSQQVYRKLD
                     IGTAKASPEEQAAAVHHLIDVRDVTEGYSAYEFVAEAKALIADITSRGKLPIIVGGTG
                     LYIQSLLEGYHLGGQVDQVQVLAYRAELDSLSDEDLETMAEQAGLMVEGNSRRRIIRG
                     LELKKFGENLENTESGYEPLYICLTDDRQVLYDRINQRVDKMMAAGLLDEVSWLYQEH
                     PQAQAAMGIGYKEFFPYLAGAISLEEAIDKVKQNSRRFAKRQLTWFRNRMQVPFYSVG
                     EPDCKSQIFTAVEEFLND"
     gene            14080..15330
                     /gene="hflX"
                     /locus_tag="U1396_000605"
     CDS             14080..15330
                     /gene="hflX"
                     /locus_tag="U1396_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM5341815.1"
                     /translation="MIETQKEQERALLVGVELQQTDNFDMSMEELASLAKTAGALVKG
                     VYTQKREKYDSKTFVGSGKLDEIAQMVEADEIDTVIVNNRLTPRQNVNLEEILGVKVI
                     DRMQLILDIFAMRARSHEGKLQVHLAQLKYMLPRLVGQGIMLSRQAGGIGSRGPGESQ
                     LELNRRSIRNQIHDIERQLKTVEKNRATVRERRLQSGVFKIGLIGYTNAGKSTIMNVM
                     TDKRQYEADELFATLDATTKQINLADKFNVTLTDTVGFIQDLPTELISAFKSTLEESM
                     NVDLLLHIIDASAPNHSEQEQVVLDILKDLDMLDIPRLALYNKLDKTDDSFTPSQFPH
                     VMLSAKDENAKGHIQMMVLAKIKTMFERFEVRVPLAESYKLHDLATLALIENRTYEED
                     VEVVSGYIASANKWKLEEFYDGLS"
     gene            15314..15943
                     /locus_tag="U1396_000606"
     CDS             15314..15943
                     /locus_tag="U1396_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEM5341816.1"
                     /translation="MTDYLDLAMKYGGFTSLDKVYLANKLAGLTDQQKLDFITPPPSV
                     INAYFAEIYQKQGAEEATDYYLTLSQQLCLFPKEPSFAESKPFVRLNLSGKSFGFTYV
                     SADGLAQVFSEGVEEVTESLLFEIAQVFPHYVVFVEEGKIFMKVNPFEDAELEDVETD
                     YLLTQVATTEGLVKISGFNQEEVLEVADGYAGQYYYVWSGRSAILYIKH"
     gene            15954..16883
                     /locus_tag="U1396_000607"
     CDS             15954..16883
                     /locus_tag="U1396_000607"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEM5341817.1"
                     /translation="MQIQFLGTGAGQPSKARNVSSLALKLLDEINQVWLFDCGEGTQN
                     QILETTIRPRKVAKIFITHLHGDHIFGLPGFLSSRSFQSSDEQTDIDIYGPVGIRSFV
                     LASLKVSGTRLPYRIHFHEFDVDTVGQVLETDKFTVFAEKLDHTIPCVGYRVIQKDLE
                     GTLDAEALRAAGVPFGPLFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTR
                     KCHASVRLAVNADVLVHEATYGKGDEKIARKHGHSTNMEAAQVAKDAGVKQLLLNHIS
                     PRFLSKDISQLRKDASTIFEQVHIVKDLEEIEL"
     gene            16880..17635
                     /locus_tag="U1396_000608"
     CDS             16880..17635
                     /locus_tag="U1396_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM5341818.1"
                     /translation="MRTILITGASGGLVQEMVPLLKDDFLILLGRDVAKIEQLYVHHE
                     KKAVFDVDIRDEMALTAFFDELDSQFGQIDILVNNAGYAIYDDFENFSSQQVQDMFDI
                     NTFALMTMCRLVGKRMKVRRSGQIINIISMSGLIASAKSSVYSATKFAAMGFSNTIRL
                     ELAQYGVTVTTVNPGPIATGFFGQADPDGSYQESVKAFLLQPDYVAKKIVSAMGTKKR
                     DINLPWSLAAAHKLYTLFPRIADYLASTVFNLK"
     gene            complement(17673..20858)
                     /locus_tag="U1396_000609"
     CDS             complement(17673..20858)
                     /locus_tag="U1396_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5341819.1"
                     /translation="MKLSYKKRLLNQVLLASTVLFATSLAQGTVFANTEEIPPTTSET
                     VTPLPEETPITKTSTSEATDNLVEGKETEKQTEEIADTSPALVSTEEETTSSEPNAEE
                     TTLRSANNDNQDTTEEKSAVPTIDTVTLETKTVYLSEAVTITESVTLPDTTEKIEWTL
                     DGKPISEWKTWNLKEGDFTGDTFITVEESRQDNQLHLNIQLAALFGEDLSKRTPSNIR
                     RTYRHFIKDMLLEGTSADGNLIISKTLHFRPYEAYRTHEEMLTEMEETKNNAATDRLV
                     RIESIGQSAEGRDIKMAVVAKDQASIDKYLTETTPLMLTQPDQMLKQLQAGTFDYKLP
                     ILINNTHADEQPGIDVVTSLFKEFAQKDTITFPSTDADGNPVTLHLKVTDLLDKFIFL
                     FNFTENPDGDVKNLRSLVNGLDPNRDTGFQVNPETQAIVRQIHKWNPISVLDIHGFVS
                     GFLIEPATPPHDPNFEYDLLADIMLEKAHEMGRAGIANSKYERYTIPKVHWGDGWDDS
                     FSGYTAVYAMYHGILGHTIEIPEGNQESFKAGFFAVLGGVHNMATKPDSLMEMRLKYY
                     SRGVNKVEDPKAESELVGPDGAVVGRVKKDQPKFFPDYYVIPMTLDKHNDMQEAFKMI
                     EYFNRNGVVVKELTEDVGNFRKGDLVVDMAQAKRGFANHVLYAGSDESAWGAMYAELV
                     VNFPDMKGFSAKAVFEENAFSSKLGSITWTKAPRTTEIDFKAPYYVVTNTSESAVQAI
                     NQAIKSGAKVYLTDDGYILETNQFSHLLDTYALYGEPLYKKPIGQELKAMKVYAPSHS
                     YSWAGDFAILANAALAVERMGFEIVNSADEADAIILESDQFDASVFGKKPIIIVGGVA
                     MQKLEELGILAGFNAEQFTDGGDYEGLMRAIIDDKDPLTSGYAMNGLFYSNSGNWIEG
                     IPEGFKTLVKIADKDYYIAGWWPGHDKLANKIVAIAGNYQDQPVFIYAGNPTNKVHPV
                     HFFRWVSNALFGSQLATLEDLPAVEILVPQPEMPKNILDEAPKNTTVVHTTKSTEAKQ
                     LPQTGEKTNYIAIALGSLLLGSIALRRKERS"
BASE COUNT         5937 a         4032 c         4767 g         6206 t
ORIGIN      
        1 ataaaaaatg tgaaaaaaag taaacctaaa gcttgcattt ctttgaaatt cgtgtataat
       61 gaaaaggtat gtgtaaaaca catatttgtg ggaggtaaaa atctttaatt accgccaaaa
      121 ccacaatagg aggattttat atcatggcta aaaaagtcga aaaactcgta aaacttcaaa
      181 ttcctgcagg taaagctact ccagctccac cagtcggacc agcacttggt caagcaggta
      241 tcaacatcat gggattcaca aaagagttta acgctcgtac agctgaccaa gctggtatga
      301 tcatcccagt agttatctct gtgtatgaag ataaatcatt cactttcatc actaaaacac
      361 caccagctgc tgttcttttg aaaaaagctg caggtgttga aaaaggttca ggtacaccaa
      421 acaaaactaa agttgcaaca gttactcgtg cacaagtaca agaaattgct gaaactaaaa
      481 tgcctgactt gaacgctgca tctcttgaag ctgcaatgcg tatgatcgaa ggtactgctc
      541 gttctatggg attcactgtt actgactaag tagcacccaa gattatctga ttacaaggag
      601 acatataaca tggctaaaaa aagcaaaaac ttgcgtgctg ctcttgaaaa aatcgacagc
      661 acaaaacttt acagcgtaga agaagctgtt gctcttgcaa aagaaactaa cttcgctaaa
      721 tttgatgcgt cagttgaagt tgcttacaac ttgaacatcg acgtacgtaa agcagaccaa
      781 caaatccgtg gtgcaatggt attgccaaac ggtactggta aaacttcacg cgttcttgtt
      841 ttcgcacgtg gtgctaaagc agaagaagca aaagctgctg gtgcagactt tgttggtgaa
      901 gatgacctcg ttgctaaaat caacggtggt tggttggact tcgacgttgt tatcgcaact
      961 ccagatatga tggctgttgt tggacgtctt ggtcgtgtac ttggtccacg taacttgatg
     1021 ccaaacccta aaactggtac agtaacaatg gatgttgcta aagcagttga agagtctaaa
     1081 ggtggtaaaa tcacttaccg tgctgacaaa gcaggtatcg tacaagctct tatcggtaaa
     1141 gtatcatttg acgctgacaa actcgttgaa aacttcaaag ctttccacga tgtaatggct
     1201 aaagctaaac cagctacagc taaaggtact tacatgactt cagtatctat tacaacaaca
     1261 caaggtgttg gtatcaaagt tgatcctaac tcactttaat caatagaaag attgtcttag
     1321 ggcaatcttt tttttgagat tttcttgaca agcacttaat ttcgatttat actatattca
     1381 atttacataa aaggagttat ccgatgaaag tagcagagaa agaagagctt tataaatacc
     1441 tttctgcagc ctacaacctt ccgcaggaag cattttcaga agccctgcgt gaaaaaatat
     1501 tggaggtagc aggtcagctg gacaaggagg aaaatctcta tatactggca ggacacttaa
     1561 gtcgctttat caatgcagag ttaacagctc tgacttgtcg agcgcctaag gaattggtgc
     1621 aactagccca ttaccttcaa gaggttcaaa accattatcg ctatgctagt ctttttccag
     1681 gaaaggtaaa ataggagaaa acatgacaga atatacaaaa ccactcgttt ggaagtggga
     1741 agatgaaaat gacaaccgat ctggcaaccg tccaacagca ggcagtcgct ttgagcaaga
     1801 cctaccaaag ggagagaagt ctttccaagt ctattcatta ggaacgccga atggcattaa
     1861 ggttgctatt atgttggagg agttgaaaga gttaggtatt tcggaagctg attatgacct
     1921 ctttctcatc aatatcggtc aaggagacca atttggctcc gattttgttg ccatcaaccc
     1981 caactccaaa ataccagcta tggtagatta ttccgagcaa gaaccgattt cggtctttga
     2041 atcagccaat attctacttt acctggcaga aaagtttgac gcctttttac caaaaacttg
     2101 ggcagagcgg acagaggttc ttaattggct cttctggcaa actggcgccg ctccatttgt
     2161 tggtggagga tttggacatt tcttccatta cgctccgaca gcgcaagaat atccgattaa
     2221 tcgctataca atggaaacta agcgtcagct agatctcttg gataagctat tggcgacaag
     2281 agaatatata gctggaaata cctataccat cgcagatatt gctatttggt cttggtatgg
     2341 tcgcttggtg caaggagaac tatatccagg ttcagcagaa tttttagatg ttgattctta
     2401 caagcatcta aagacctggg tagagaaaat agctcagcgc ccagctgtac aacgagggtt
     2461 gacagtgaaa tatcattcaa ttgataatta attgacttgc ccaccttatg ggtggttttt
     2521 tcttttactt tggtatgata aaagtttata atgaaagagt tagactttgt gaaaatccaa
     2581 aaatagaaat taataattga tactcaatga aaatcagaat tagactaggc gacgtagatg
     2641 cagatagaac tgaagttcac caaatcaagt caacaacgtc tgattttgat tttcgaagag
     2701 tatgagtttt tcctgtctta tatttacata gaaagtaata gaaaaatgtc cgaaaaagtt
     2761 gaaatgcagc agtccaaaga acaggcgaca gtggccagag gcttggcttg gttgactgct
     2821 ggaaatattc ttagtcgcct gcttggtgtt gcctatgtta ttccctggta tatttggtta
     2881 ggggaatatc gagctgaagc caatgccctc tttagtatgg ggtatcaaat ctatgccaac
     2941 ttcttattga tttcaacagc tggtcttccg acagctattg ccaaacaagt agctaaatac
     3001 aatatcttag gtaaagaaga ggtgtcgctt tacttggtca gagaattctt caagctcatg
     3061 ttggtctttg gagctgtctt tgcaggggtc atgtatctaa gtgctccgtg gttggcagac
     3121 gcatcggggt cgaaggaaaa gttacttccg gtcatgtata gtctagtccc gcctctcttt
     3181 atcttcccag ccatgagtat cttgcgtggt tttttccaag gtcggcacga tatgaagccc
     3241 tatgctatca gccagcttgc agagcagctg gtacgggtta tctggatact ggcagcaaca
     3301 tttatgatta tgaagttggg tagcggtgac tatcttgaag cggttgtcca atctaccttt
     3361 gcagcttttg tcgggatgat tgctagtgtt gggattttag tttatacttt atggaagcaa
     3421 ggctaccttg gtaagttgct tcatgctaag aaacaaaaga tttctttgga tacaggtcaa
     3481 cttattaagg aaactgttcg agatgcgatt ccaattatca ttttaggtct aacgcttcaa
     3541 ttattgcagt ttattgatca agtcacattt attcgtgtta tggaaagaat tacggattac
     3601 agtaattcgg aacttttaga actttattca tatatggctg ccaatccaag taagattacg
     3661 atgatgatta tcgggatttc actgagtttg ggaagtgttg ctattccatt gattacagag
     3721 aaatttgtca agaaagattt gaaggcggcg tctcatttag tggcggataa tctacaatta
     3781 ctctttatat tcactatacc ggcaattgtt ggaacggtct tgttggctgg gccactttat
     3841 acgatttttt acggaccgtc agaccctatc gccattactc tatttatttg gaacttattt
     3901 ttaattttac ctctgggact atattctgtc attagtgtgg tcattcaagc gatatttgaa
     3961 aatagaagag ccatttatta tttcttgatt gggatgctag tgaaaatcgt tttacaagta
     4021 ccaatgatct atgtctttaa ggtatatggt agctttatct caacgatatt tgggttggga
     4081 attatgctgt acctcttcta taggcgaatt gacaaggttc tgcatattga tgaaagacta
     4141 gtgataaaag atattgcgac cattagttgg atttctatcg taatgggact cattgtatgg
     4201 gggattgaat ttgttttgaa tcttatcctt ccagcaaatg gctatgtatc tagctttatc
     4261 cacttggctg ttgcaggtgg agcaggtatg cttgtctttg tcatcttgac attgaagact
     4321 cgtcagctag atcgtttaat tggaagtcgg gctcagagtt tacggaggaa attgcgccta
     4381 ggctagtttg ttttaaagat ctctattttc tactattgaa aagctgggaa aaagaggcgt
     4441 tttagaatgt gagaaggaaa gttcgttgag gattttcctt ttttcttgga gatttcagta
     4501 taaaaaaaac ggtttttgtg gtagaatagt agggataaaa aagaggagag agatgatgaa
     4561 acctaaatac gaacgtattc taatcaaact atctggtgaa gccttggctg gtgaacgtgg
     4621 tgtcggtatt gaccttaaaa ctgttcagga aatggcaaag gaaattcagg aagtcgcaga
     4681 atcaggtatt cagattgccc ttgttattgg tggtggtaac ctttggcgtg gagaacctgc
     4741 tgctgaagcg ggtatggatc gagttcaagc agactataca ggcatgttgg ggactgttat
     4801 gaatgctctt gtaatggctg attcccttaa acagcttggt gtggatacac gtgtgcagac
     4861 agcgattgcg atgcagtcag ttgcagagcc ttatattcgt ggtcgtgctc ttcgtcatct
     4921 tgaaaaaggt cgcattgtta tttttggagc tggtattggt tctccgtact tctcaacgga
     4981 tacgacagcg gctcttcgtg ctgcagaaat tgaagctgat gcgattttga tggctaaaaa
     5041 tggtgtggat ggcgtctaca atgctgatcc gaagaaagat gctaatgcag ttaaattcaa
     5101 tgaattgacc caccgtgaag tgattagtcg tggtttgaaa atcatggatg cgacagcatc
     5161 aactctctca atggacaatg atattgattt ggtcgtgttc aatatgaatg aaccaggaaa
     5221 tattaaacgt gttgtctttg gtgagccaat cggtactacc gtttcaaatt cttcagaaga
     5281 aaaataaatc atatcgtcat ttagtttttc ttttattact tcgttaattt gccttgccta
     5341 acttcggtta tacctgtggc tcgttaccta gtactaaaag taaactaaaa gactgtaaaa
     5401 aaatacaaag aaggaagtct tatgtctaaa gaaattattg ctaaagcgca agatcgcatg
     5461 aaccaatctc atcagagttt ggcacgtgaa ttcagccaca ttcgtgctgg ccgtgccaat
     5521 gctagtttgt tggaccgtat ttcagttgag tactacggtt ctccaacgcc attgaaccag
     5581 ttggctggta ttacagtgcc agaagcgcgt gttcttttga ttactccgtt tgataagtca
     5641 atcttgaagg atattgagcg tgctttgaac gcttcagatc ttggtttgac accgcaatct
     5701 gacggtactg ttatccgttt ggttattcct gcccttacag aggaaactcg taagaacttg
     5761 gcgaaggatg tgaaaaaagt cggtgaaaat tcaaaagttg ccatccgtaa tatccgtcgt
     5821 gatgccatgg atgaagctaa aaaagctgaa aaagcaaaag aaatcacaga agacgagttg
     5881 aagacgcttg aaaaagatat tcaaaaagta acagatgatg ctatcaagac aattgataaa
     5941 atgactgccg acaaagaaaa agaattgttg gaagtttaat caacacgttt ttaggctaca
     6001 aaaatagatc atcactgggc tgtctaactt ccagtggtga accaataaga aatctaatgg
     6061 ggggagttag acaagacttc ccccactttt taatcagaaa gaagaaaatc atgaatgatt
     6121 tattagcaca gtatatcgtt ggtttagtga ctgacgaaaa cgatcagttt tactttgtcc
     6181 aaaaagaggg gagaaccttt gctctttcta aggatgaagg agaacatagt ctaggtcaat
     6241 ctgttaaggg atttgcctat actgatatga aacaaaaact ccgtttgaca actaaggaag
     6301 ttggagtgag tcgtaccagc tttggttggg gaactgtcac agaggtacgt aaggatttgg
     6361 gtgtctttgt ggatacaggt ctaccagaca agcaagtggt tgtttccttg gacattttgc
     6421 ctgaaatcaa ggaactctgg ccgaagaaag gggatcagtt gtacgtcaaa ttagacgtcg
     6481 ataagaagga tcgcatttgg gctctgccag cttttcagga agattttcag aaaatggcta
     6541 gacctgctta tgacaatatg caaaaccaaa atctgcgagc gattgtctat cgtttgaaaa
     6601 tgaatggtac ttttgtttat ttgccagaca acaacatgct tggttttatc cacccaagtg
     6661 aacgctttgc ggaaccacgt ctgggtcagg ttttggaggc gcgtgtcatc ggttaccgtg
     6721 cagttgatcg gaccttgaac ttgtctctca agccacgttc atttgagatg ctggaaaatg
     6781 atgctcagat gatattgact tatctggaaa gcaatggagg tttcatgacc ttgaacgata
     6841 agtctgctcc ggaagacatc aaggccacct ttggtatttc caaagggcaa ttcaaaaaag
     6901 ctcttggtgg tttgatgaag gctggaaaaa ttaaacagga ttcttttgga acagaattgg
     6961 tctagggggc gtctatgcta gtatatattg ctggtagtgg ggcaatgggg tgtcgttttg
     7021 gttatcaatt gtctaagaca aatcatgaag tgattttgct ggataattgg gaagaacata
     7081 tcgaaacgat tctagaaaac ggcttgaaag tgactggaga tgtagaggaa actgtatact
     7141 tacacatcat gaaaccgacc gaagcaacga gagaagcaga ttttatcatt ctattgacta
     7201 aggctgatca gttgccaaag atgttgcggg atattaaacc gattatcggt ccaactacca
     7261 aggttttgag tctcttgaat ggtttggggc atgcgacgac catgcgtcgg tacgtgccag
     7321 atgaaagtat tatggttggg gtgaccatgt ggttggcggg actaaagggt cctggacatg
     7381 ctcacttaga aggtccgggt tctatgtccg ttcagcatat tcttggtgat gagcaatcag
     7441 ttgcggatat tattgaaatg ctgaatgaag ctggactaaa tgtgacctat gacaatcatg
     7501 ttgtcagtgc catttggcag aaagcctgtg tcaatggtgt gatgaatcca acttgtacca
     7561 ttttagactg tacaattggt gaattatttg gtacggaggc tggactgaat ctagtacagg
     7621 ggattttcaa agaatttatt gctgttgcta agtctgaggc agatggaatt gacgaagaag
     7681 ctatttggaa atatgttatt gatgcttcga agaaggcttc caatcactat ccatctatgc
     7741 atcaggactt ggtccaacat ggtcgaaaga cagaaattga ttatctgaat ggagcggttg
     7801 tttttaaggg caaacgtgca ggtatcccaa cgccatactg tcagatgata acagatatga
     7861 ttcatgccaa ggaaagtatg ctggggttga gataggagaa agtcatgctg attgaagtgg
     7921 aaacgattga agaatatatg gctgccttgc ctgaaaatcg gaaggaagca gttggacgac
     7981 tccatcaagt gattgtggaa cagttaccag ctggttttga agtaggcatc ttgggaggta
     8041 tgattaacta ttatgtgcca cttactgcct accctgatgg ttatcattgc acaccgggag
     8101 agcccttgcc tttccttgcc ttggcatcac aaaaggcaca tatcgccctc taccacatgg
     8161 gaatctatat ggaccaagaa ttgaatgatt ggttcgttgc tgcttatcaa gcacaggtgc
     8221 ctaccaaact ggatatgggc aaatcttgtg ttcgtatgaa aaatcccaag aatattcctt
     8281 atgaattgat tggggaattg gttagtaaga tgtctatgga gcgctatata gagctctacg
     8341 aaaaaaatca tagaaagtag atgtagtgag aagaagtttt tattcttggt tgatgaccca
     8401 gcgcaacccg aaaagtaatg aaccagtagc tatcttggca gattatgcct ttgatgaatc
     8461 tgattttcct aagcaatcag ataatttcga tgaagtcagt cgttttttgg aggaatcggc
     8521 cagctttgcc ttttccatgt ctgattttga tgcgatttgg gaagattatt tgggacattg
     8581 atggataaaa tagtacaaaa tagccttgtt tgggctattt ttgttataat agagaaaagc
     8641 acaggaaaag gagcaactct tgctagaaca ttcaattgat attcaactca agcatccaga
     8701 tgattcattt agcctatttg gttcgaatga acgccatctg agattgatgg aacaggaact
     8761 aggtgtggtt attcatgccc gtacggaaaa agtgcaggtg attggacagg aagaacatgt
     8821 agaacaggcg cgtcttgtta tccagtctct ccttgtcttg gtgagtcgtg gtttggttat
     8881 caatacgcca gatgtggtca cggctatttc catggcaaaa aatgatgaga ttgagaaatt
     8941 cgttgccctc tatgaagaag agattatcaa ggacaactat ggcaaaccca ttcgcgtaaa
     9001 gacccttgga caaaaactct acgtggacag cgtaaagcgt catgacatcg tatttggaat
     9061 cggtcctgct ggtacaggga agaccttctt ggcggttact ctagctgtaa cagccctcaa
     9121 gcggggacag gtcaagcgca ttgtcctgac ccgtcctgcg gtcgaggcag gtgaaagttt
     9181 aggcttttta ccaggggact taaaagaaaa agtagacccc tatttgcgtc ctgtctatga
     9241 tgccctctac cagattttgg gcaaggagca gaccacgcgc ctaatggagc gcgagattat
     9301 cgagattgca ccgctggcct atatgcgggg gcggaccttg gaagatgcct ttgtcatctt
     9361 ggatgaggcg caaaatacca ccattatgca gatgaagatg ttcctgaccc gtctgggctt
     9421 taattccaag atgattgtca atggggatat tagtcagatt gacctgccac gcaaggttaa
     9481 atcgggcttg attgatgcga cagagaaact aagcaaaatt ccacagattg atttcgtgca
     9541 tttttcagcc aaggatgtgg ttcgtcatcc agttgttgcc cagattatca atgcctatga
     9601 agaggaggct cgggcagctg atagtcgagc aagttttgaa acgattgggg agcctagtcg
     9661 gaaatacaat ggtgaagagt agttgtttca ttggctgata tataaaagaa ttgttatgct
     9721 agttacattt gatatataat aaaaagcctg aatggacgat actgtaagtg atgaaacaaa
     9781 caggagctta gtccaaataa gcgacttaca ccatatcgta aaatcacatc gtacagcaaa
     9841 tatcaactat ttgtcacaag ttataccaag cctattgccc gactccctta aagcattgtc
     9901 acaacgttgc tttgtcaacg gtatcagata aatctattaa aatattgcta gtacttcaag
     9961 ttggattaga gattaaatct caacgccatt ttcgaaccag ccctcattat agcggatagg
    10021 ggtcatagaa cctataactt tatggattgt taccaataaa aaggctggtt ctatctgatt
    10081 cagattcgag atgggaaaag cagcatgaaa ccgagtttta ctccctttct tttcgcatgt
    10141 tcggcaccga taagtatgaa accctcgtgg ccaattgtga taaacctgta gactatataa
    10201 aaaagcctcc ttttgtgttg tctgaacata aaatcccaag tattacatcg gaaaaatact
    10261 tgggattaga tatcatagat taactgatca gagttaactt agagacactg attgatggcg
    10321 gggcttttat gcacgaataa caagaagtgg cttaagacca aaacttgtct gcaatttctt
    10381 ggccttgttt aatttttgcc cactgttgcg ggatggccaa ttcattacct gaatcacatg
    10441 aagcgaatcc acattgatgt gacaagtaga gacgctcttt tggaataatc ttgcttgctt
    10501 cctcgagtaa tttgtaaaca cgttcttcat catccaaatc agaagtttta cttgaaagta
    10561 gaccaagaac gacttcgaca ttcttgtcac gcaagctttc caaagctttt aaatcacctg
    10621 cacgttcatc atcccactca aggaagaatc gatcgtattt ttggtcacgc aggaattttt
    10681 tagcaatagc ttcgtaagtt ccgccagctg cagagcggct ttcatagtta ccacggcagt
    10741 tgtgcctcca gacggtcaag ccaatttcat gtccgtaatc aataacagca ttattgatag
    10801 caacaaactc gtcagccaaa gcagccaatg cttcagaatc gtcttgtggc aagaaaggta
    10861 cagggttagc agggtcgaat aattcccaaa ggcagtcatc aaattgaacg atttgtccac
    10921 cagcttcctt gtactggtct aaaaattcct tataggcagc gatgagcccg gcttttaatt
    10981 catcatgagt cttgtagact tgatttggtc caacttgtcc attgaaaatt gtcaattcat
    11041 taaaggcatg ggctggaccg aaaatagtct gtttggttac agtttctcct gctaattctt
    11101 tcacttgttt gaaaatatca atgaaatggt gattttttgc agaaagtgga gcagtaatac
    11161 gcaatccaat atccttacgt gtttcaaaaa tctgtccatc atggtcttta aatggataac
    11221 catgctcagc aatgtaacgc tcgataccgt cgaagcccca gagaaaatct aggtgccaca
    11281 ttgaacgacc aaattctcca tctgtcacaa tatccaaacc gttttctttt tgttctgcaa
    11341 caattttttg gatgagtgaa gcttcagttt ctttgtaacc atcgaagtca tcatagaatg
    11401 ggtatttgat gtcttcacga gcttcgattt gtcgtttaaa ttctcctaag tttgctggtc
    11461 gaagaagtga accgactaat tggaatcttg aagttgtcat atgtgtgtct ctctttcgtt
    11521 ttagtgatga acctattcta actcataagc tatcatttga aaaatagtta ttttcatggc
    11581 aaatccatag ttaaaaacta taactagaaa aaatagacgg aaataacttt ctatcatttg
    11641 tcaactatgg tataatcgaa agtgctgaaa tccgaacatt aggagactta ggagaaaaat
    11701 gaaaaaacaa tcacccttta taattgcagg aatcgtcatg ctaggggtcg tgatgcgtgc
    11761 cccctttaca gctttgcctg ctattttgac agatgtggca gcaggactgg gagtagaagt
    11821 gagttcatta ggaattttaa cctctattcc gctcatcatg tttgctctct gttcatcctt
    11881 agcaccgcgt cttgcggcta agtttggcat ggaaaaacta atggccctag tcttactggt
    11941 tatggtactg ggttcaggaa tacgagttct caacttacca gccctttaca ttggtacaat
    12001 gcttgttggt gctacaatag catttattaa tgttttgcta ccaagtttgg ttgcggctaa
    12061 ttttccaaag aaaattggtc tgtatacgac gatttatatc actctcatgg gggtggcggc
    12121 aacagttgca tctatgattg ctgttccaat tgtatcctct agttcttggg aattttttat
    12181 tctattaatt acaggattgg tgtttatggc tttcctaatc tggttgccta atgtaagaaa
    12241 taaccatcga tttgcaagtg agaaccaagg aaaccagaaa tcatctatct ggaaaaataa
    12301 agcagcgatt gcctttttga tatttggtgg gctacaatca gtcctctact atacagagat
    12361 tacctggttg ccaactattt ctcaatcagt tggctttagt aaggcagaag cagggctaat
    12421 ggctggcttc ttcaatatga cagctattcc catgtctatg attatcccag ctgttctttc
    12481 ccgtcagaca aaagaaatgc gtcgaaatat catgctggct atttcatctg ttaccttact
    12541 tggtttggtc atgatggtat tgattccgac caatctcatt ctttggtcag cgcttcacat
    12601 tattttaagt ttttcaaatg cagccctctt cccttatatg atgttgagct ttactttgaa
    12661 aacaagcaac agccaggcta ctgcccagtt atcaggaatg gtgcagacag gtggctatct
    12721 cattgcagca tttggaccag gccttctcgg ttacagctat ccaatcttcg gaaactggat
    12781 gccattgatt cttgctctgg ctatcgtcac acttgccatg atgtggacta ttgttctcat
    12841 tgaaaaagaa gatattatct tataaagtat aatcccttaa gaaggctggc atttttctgt
    12901 gaaaatggca gagcttctaa gggatttttt gtcaaacaaa aaagctagac atttgccagc
    12961 tttttaatgt gccacacggc gacgtgcagc ttttttgcga ttttcttcga tgaaagcttc
    13021 tttcttttct tctggttcaa tgattgtttt gtgaacagtg aagactgcgc ctgctgcaag
    13081 agcaactgta gaaagaacac ctgtcaagaa acctttacca aaacctttag ccatagttat
    13141 ttctccttta cttgtgttat aatagatttt agcgaaaaaa caaaatattt tcaaggaaaa
    13201 agatgaaaac taaagttatt gtggtcattg gaccgacagc ggtaggaaaa actgcccttg
    13261 gcatagactt ggcccagcgc tacaatggag aaattattag cggtgatagc cagcaagtct
    13321 atcgcaaact tgatattggc acggcaaaag ctagtcctga agagcaggct gctgcggttc
    13381 atcacttgat tgatgtccga gatgtgaccg agggctattc ggcttatgaa tttgtagcgg
    13441 aagccaaggc cttaattgca gacattacta gtcgtggaaa gttgcctatt atcgtgggtg
    13501 ggacagggct ttacatacaa agtctgttag aaggctacca tctgggcggt caagttgacc
    13561 aggtgcaagt tcttgcttat cgggcagaac ttgatagctt gtctgacgag gatttggaaa
    13621 caatggcaga gcaggcaggt ttgatggtcg agggaaacag ccgacggaga atcattcgtg
    13681 gactggaatt gaaaaaattt ggcgaaaact tagaaaatac agagtcagga tatgagccac
    13741 tttacatctg tttgacggat gacagacagg ttctttacga ccgcatcaat cagcgagtgg
    13801 ataagatgat ggcggcgggc ttactggatg aagttagctg gctctaccaa gaacatcccc
    13861 aagcccaagc agccatgggg attggctaca aagaattttt cccttatctt gcaggagcca
    13921 tttcgctgga agaggctatt gataaggtca agcaaaacag ccgccgcttt gccaaacgcc
    13981 aattgacttg gttcagaaat cgcatgcagg ttcccttcta ttcagtaggc gagccagatt
    14041 gcaagtcgca gattttcacc gccgtggagg aatttttaaa tgattgaaac gcagaaagaa
    14101 caagaacgcg ccctcctggt tggagtggaa ttacagcaga cagacaactt tgacatgtcc
    14161 atggaggagt tggcaagtct tgctaagacg gctggtgctc tggtcaaggg agtctacact
    14221 caaaaacgag aaaaatacga cagcaagact tttgtcggtt ctggtaagct ggacgaaatt
    14281 gcccagatgg tcgaagctga cgagattgat actgtcatcg tcaacaatcg attaacaccc
    14341 cgccagaatg tcaatctgga agaaattcta ggtgtcaagg taatcgatcg catgcagttg
    14401 atcttggata tttttgccat gcgggcacgg agtcacgaag ggaaattgca ggtccaccta
    14461 gcccagctca agtacatgtt gccacgcttg gttggtcagg gcatcatgct cagccgtcag
    14521 gcaggtggta tcggctctcg tggaccaggt gaaagccagt tggagcttaa ccgccggagc
    14581 attcgtaacc agattcatga cattgagcgc caactcaaaa cagtggagaa gaaccgagcg
    14641 actgtccgtg aacgccgttt gcaatcaggc gtgttcaaaa tcggcttgat tggctatacc
    14701 aacgcgggta agtccactat tatgaatgtc atgacggaca agcgacagta cgaggctgat
    14761 gaactttttg ccacactaga tgccacaacc aagcagatta acttggcaga caaatttaat
    14821 gtgaccttga ccgatacggt tggtttcatt caggacctgc cgactgagtt gatttctgcc
    14881 ttcaagtcca ccttggagga gtccatgaac gtggatctct tgctccatat catcgacgcc
    14941 tctgccccca atcacagtga gcaggagcag gtggtcttgg acattctaaa agacctggat
    15001 atgctggaca ttccacgtct agctctctac aacaagttgg acaagaccga tgacagcttt
    15061 acccccagtc agttcccaca tgtcatgctg tccgctaagg atgaaaatgc caaaggtcat
    15121 attcagatga tggtcttggc caagattaag accatgtttg aacgatttga ggtcagggtt
    15181 ccacttgctg aatcttataa attgcatgat ttagcaactc ttgccctgat agaaaatcgg
    15241 acctatgaag aggatgtgga agtggtatca ggctatatcg cttccgctaa taaatggaag
    15301 ttggaagaat tttatgacgg attatcttga tttggcaatg aaatacggtg gctttaccag
    15361 tctggacaag gtctatctgg cgaataaatt agctggtttg acagaccaac aaaaactaga
    15421 ttttatcacg ccaccgcctt cggttatcaa tgcctatttt gcggaaatct accagaaaca
    15481 aggggcagaa gaggcgacgg actactatct cactctttct cagcagctct gcctttttcc
    15541 aaaagaaccc agctttgctg aaagcaagcc ctttgtccgc ctgaatttat caggtaagtc
    15601 tttcggcttt acctatgtgt cggcggacgg tctggcccag gttttttcgg aaggtgtaga
    15661 ggaagtgacg gaaagtttgc tctttgaaat cgcccaagtc tttccccact atgtcgtctt
    15721 tgtggaggag ggcaagattt tcatgaaagt caatcccttt gaggacgccg agttagagga
    15781 cgttgagaca gactaccttt tgacccaagt ggcgacgaca gaaggtttgg tcaagatttc
    15841 aggctttaat caggaagaag tgctggaggt ggcggacggc tatgctggtc agtattacta
    15901 tgtctggtcg ggtcgctctg caattttata tataaaacat tagaaagtaa acaatgcaaa
    15961 ttcaattttt aggtacgggg gctggtcagc cctccaaggc tcgaaatgta tccagtttgg
    16021 ccttgaaact cttggatgaa atcaatcagg tttggctctt tgattgtggt gaaggaactc
    16081 aaaatcaaat tttagaaacg actattcgtc cacgtaaggt cgcaaaaatc tttatcactc
    16141 acctgcacgg agaccatatt tttggactgc ctggtttttt gtctagccgt tctttccagt
    16201 ctagcgatga gcagacggat attgatattt acggtcctgt tggcatccgt tcctttgtct
    16261 tggcaagttt gaaggtatca gggacacgcc taccttatcg cattcatttt catgagtttg
    16321 atgttgatac ggtcggccag gtcctagaaa cggacaaatt cacggtattc gctgaaaagt
    16381 tggaccatac cattccgtgt gtcggctatc gtgtcatcca gaaagatttg gaagggacat
    16441 tggatgcaga ggctctgcgc gcggcaggtg tgccatttgg tcccttattc ggtaaaatca
    16501 aaaatggtca aaacgtgacg ctagaagatg ggactgaaat tatcgcgagt gactatattt
    16561 ctcctcctcg gcctggtaag gtagtgacca ttcttggtga tacgcgcaag tgtcatgcta
    16621 gtgtccgtct ggctgtcaat gctgatgtgc tggtgcatga ggcgacttac ggaaaaggcg
    16681 atgagaagat tgctcgcaag catggccatt cgaccaatat ggaagccgct caggttgcca
    16741 aggatgctgg tgtcaagcag ctcttgctta atcatatcag tccacgattt ttatccaagg
    16801 atattagtca attacggaaa gatgcaagta ctattttcga gcaggttcat attgtcaagg
    16861 atttagagga aattgagcta tgagaaccat tctaatcaca ggtgcctctg gtggcttggt
    16921 acaggaaatg gtgccattgc tgaaagatga ttttttgatt ttactaggtc gtgatgtggc
    16981 aaaaattgag cagctctatg ttcatcatga aaaaaaggct gtctttgatg tggacatccg
    17041 agatgaaatg gccctgacgg cattttttga tgaactggat agtcagtttg gtcagattga
    17101 tattttagtc aataatgctg gctatgccat ttatgatgat tttgagaatt tttccagcca
    17161 gcaggtgcag gatatgtttg acatcaatac ttttgctctg atgaccatgt gccgtttagt
    17221 aggtaaacga atgaaggtaa gacggagcgg gcagattatc aatatcattt ccatgtcagg
    17281 cttgatcgct tctgccaagt cttcggtcta ttcggcgacc aagtttgcag ctatgggttt
    17341 ttcaaatacc attcgcttgg aattagccca gtatggtgtg acagttacaa ctgttaaccc
    17401 aggacctatt gcgactggct ttttcggtca ggcagatcct gacggaagct atcaagagag
    17461 cgtcaaggct ttcttgctgc aaccagacta tgttgccaag aagattgttt cggctatggg
    17521 gacgaaaaaa cgagacatca atttgccttg gtcactagca gctgctcata aactctatac
    17581 tctctttccg agaatagcag actacttggc cagtacagta tttaatttga aatagaaaaa
    17641 cgccgaaata aaactcggcg ttttcgtgta gactagctac gctcttttct acgtaaggcg
    17701 atactgccta gaagtaggct acctaatgcg atagcgatat agtttgtttt ttcacctgtt
    17761 tgaggtagtt gttttgcctc ggtagacttg gtggtatgta ctactgtagt attttttggt
    17821 gcttcatcca aaatattttt tggcatttca ggttgtggta caagaatttc tacagctggt
    17881 aagtcttcta aggttgctaa ttgactacca aatagggcgt tggacaccca acggaagaag
    17941 tgaacagggt ggaccttgtt tgttggatta cctgcataga taaagacagg ttggtcttga
    18001 taatttccag cgatggcgac aattttattg gctaatttgt catgaccagg ccaccaacct
    18061 gcgatataat aatctttatc agcgatttta acaagcgttt taaatccttc aggaatacct
    18121 tcaatccaat taccggagtt ggaatagaaa agtccattca tggcgtagcc acttgttaat
    18181 ggatctttat catcaataat agcccgcatg agaccttcat agtcaccacc atctgtaaat
    18241 tgttccgcat tgaaacctgc taagattcct aattcctcca gtttttgcat ggcgacacca
    18301 cctacgatga taattggttt cttaccaaat acactggcat cgaattggtc tgattcgaga
    18361 atgatagcat cagcctcatc tgcgctattg acaatttcaa agcccattcg ttctacagca
    18421 agtgcagcat ttgcaagaat ggcaaagtcg cctgcccaac tataagagtg agaaggagca
    18481 tacaccttca ttgctttcaa ttcttgtcca ataggcttct tatagagagg ctcgccgtat
    18541 agagcatagg tgtccagtaa gtgactaaat tggttagttt ccaagatgta gccatcgtct
    18601 gtcaggtaga ccttagcgcc tgatttgatg gcttgattaa tggcctggac agcgctttca
    18661 gaggtgtttg tgacgacata ataaggcgct ttgaaatcaa tttccgtagt acgtggagct
    18721 tttgtccatg tgatgctacc taatttgctg ctaaaggcat tttcttcaaa tacagccttg
    18781 gcgctaaagc ctttcatatc tgggaagttg accaccaatt cagcatacat ggctccccag
    18841 gcagattcat cagaaccagc gtagaggaca tggttagcga atcctcgttt ggcttgagcc
    18901 atatcgacaa ctaggtcgcc cttgcggaag tttccaacat cttcagttaa ttccttgaca
    18961 acaaccccat tacgattgaa atattcaatc atcttaaatg cttcttgcat atcgttgtgt
    19021 ttatcgagcg tcataggaat cacatagtag tctgggaaga attttggctg gtcttttttg
    19081 acacgtccga caacagctcc gtctggtccg actagttcag actctgcttt tggatcttct
    19141 accttattga caccgcgtga atagtatttg agacgcattt ccataagact atctggcttg
    19201 gttgccatat tgtgaacacc gcccaaaaca gcaaagaatc ccgccttgaa tgattcttga
    19261 tttccttctg gaatttcaat cgtgtgtcca agaataccgt ggtacattgc atacaccgct
    19321 gtatagcctg agaaggaatc gtcccaacca tctccccagt ggactttagg gatggtgtag
    19381 cgttcatatt tagaatttgc aatacctgct cggcccattt catgagcttt ttccagcata
    19441 atatcggcta gtaaatcata ttcaaagttc gggtcgtgtg gcggagtagc aggctcgatg
    19501 agaaatccag atacaaaacc atgaatatct aaaacagata ttggattcca tttgtggatt
    19561 tgacggacga tggcttgtgt ttctggattc acttggaaac cagtatcacg gttagggtcc
    19621 aaaccattta ctagtgaacg caagttttta acatcgccat caggattttc tgtgaaattg
    19681 aacaagaaga taaatttatc taacaaatct gtcactttta aatgaagagt aacaggattt
    19741 ccatcggcat ctgtagatgg gaaggtgatg gtatcttttt gtgcaaattc tttgaatagg
    19801 ctagttacca catctatgcc gggttgttca tcagcatgag tgttgttgat gagaataggt
    19861 aatttatagt cgaaggttcc agcttgcaac tgtttcagca tctggtcggg ttgggtcagc
    19921 atgagtggtg ttgtttcagt aagatattta tcaatacttg cttgatcttt agccacaaca
    19981 gccattttaa tgtctctacc ttcagctgat tgaccaattg actcaatcct tactaggcgg
    20041 tcggtcgcag cattattttt cgtttcctcc atctctgtca acatttcctc atgtgtacgg
    20101 taggcttcat aaggacggaa atgaagagtt tttgaaatta tcaagtttcc atcggcacta
    20161 gtaccttcca acagcatatc ttttataaaa tgtcgatagg tacggcgaat attactcggt
    20221 gtccgtttac tcaaatcttc tccaaagaga gctgcgagct ggatattcaa atgaagttgg
    20281 ttatcctgtc tgctttcttc tactgtgata aatgtatcgc ctgtgaaatc tccctctttc
    20341 aaattccagg ttttccattc ggaaataggc tttccatcca atgtccattc tattttttca
    20401 gtcgtatctg gaagtgtgac ggattctgtg atagtgactg cttccgatag atagacagtt
    20461 tttgtttcga gtgtaactgt atcaatagtc ggtacggcag atttttcttc tgtagtatcc
    20521 tgattatcat tattagctga tctgagcgta gtttcctcgg cattgggctc ggaagatgtt
    20581 gtctcttctt ctgtggaaac aagtgcagga gaagtatctg ctatttcttc agtttgtttt
    20641 tctgtctcct tcccttctac aagattatct gtagcttcgc ttgtgctagt tttcgttata
    20701 ggagtttctt caggcagtgg agtcactgtt tcactagtag taggtggtat ctcctctgta
    20761 tttgcgaaga ccgttccctg agcgagagat gtagcaaaaa gaactgttga ggcaagtagg
    20821 acttgattca acagcctttt cttatatgaa agtttcatgc gaacttcctc cttttgataa
    20881 tgtgtacggg gtaataaatt aaaacgggtt atttcatgct tatcttatca aaaaatatat
    20941 gt
//
LOCUS       DASGBY010000021        20854 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.021, whole genome shotgun sequence.
ACCESSION   DASGBY010000021 DASGBY010000000
VERSION     DASGBY010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20854
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.021"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..733)
                     /locus_tag="U1396_000610"
     CDS             complement(<1..733)
                     /locus_tag="U1396_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM5341820.1"
                     /translation="MARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADLYTQVLSD
                     GLLAGKPFSSLLADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEV
                     ATYPIILLGFLFLIMLGLKNYLLPQLEEGNAATMLINHLPTIFLSLCGLSLVAVLAGM
                     VWFRKTNKIKAFSRLAALPFFGKLIQIYLTAYYAREWGSLIGQGLDLPQIVGLMQEQQ
                     SQLFREIGQDLEQSLSNGQSFHEHIK"
     gene            complement(717..1667)
                     /gene="tadA"
                     /locus_tag="U1396_000611"
     CDS             complement(717..1667)
                     /gene="tadA"
                     /locus_tag="U1396_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HEM5341821.1"
                     /translation="MIQEKARKLIEKAVADRVSDIYLVPRGESYQVYHRIMDEREFVQ
                     DLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYDYGSGEISLRLSTVGDYRGKESL
                     VIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
                     ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVI
                     RASLTGATVFSTVHARSISGVYARMLELGVSPEELNNALQGIAYQRLIRGGGVVDFAK
                     GNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGSPA"
     gene            1753..2703
                     /locus_tag="U1396_000612"
     CDS             1753..2703
                     /locus_tag="U1396_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM5341822.1"
                     /translation="MKTLKKGDHIHVVSPSSSIERIGGFEANLAAKEKLEDLGFKLSF
                     SEHYFENDIFDSAPIASRVADLEVAFADESVDAILTTIGGFNCNELLPYLDFDLIARH
                     PKIFCGYSDTTALLNAIYAKTGMPTYMGPAYSSFKMDLGQQYQTEAWLKAVTQDSFDL
                     TPSPEWSSDAWYLPDAPRTFYPTEWKVYNPGQASGIAIGGNISTLNLLTGTEFAPRPD
                     EYILFLEEAEDDDYLIIARHLTTLLQAYPNPQALVFGRFPKETKMTEKILLAILDKHP
                     ILKTIPVLYDLDFAHTQPLFTITIGGQVELDTKAFSIRFS"
     gene            complement(2738..3103)
                     /locus_tag="U1396_000613"
     CDS             complement(2738..3103)
                     /locus_tag="U1396_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HEM5341823.1"
                     /translation="MYQVIKMYGDFEPWWFLDGWEEDVTSRAAFDRYEDALNAFQKEW
                     VRLSEDFPMKKSKNGTMVAFWDESDQHWCEECDEYLQRYHSLMLVEARENLPAGFIKQ
                     PTQPRVRPCKLKQNNCVNE"
     gene            complement(3252..6899)
                     /gene="rpoC"
                     /locus_tag="U1396_000614"
     CDS             complement(3252..6899)
                     /gene="rpoC"
                     /locus_tag="U1396_000614"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEM5341824.1"
                     /translation="MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERD
                     GLFDEVIFGPTKDWECSCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAPIS
                     HIWYFKGIPSRMGLTLDMSPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLR
                     EYGYGSFVAKMGAEAIQDLLKQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFY
                     KSGNKPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLARLLELN
                     APGIIVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLG
                     KRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIE
                     RGDDRIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNAD
                     FDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDA
                     GREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPWKDNQKHKIMMTTVGKIL
                     FNAIMPEGLPYLQEPNNANLTEGTPDKYFLESGSDIKAAIAELPINPPFKKKNLGNII
                     AEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGIADIPVIDNKAEIIEESHERVEQ
                     IKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISN
                     FSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGRYTKKTVKHPE
                     TGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCRHCYGINLATGDAVE
                     VGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGEAVI
                     TEVKGEVIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQVARGAALTEGS
                     IQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDT
                     DLLMGTLMDISDFTDANAETVIAGGVPATARPVLMGITKASLETNSFLSAASFQETTR
                     VLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTVAEEL
                     AAEAELEAVTE"
     gene            complement(7077..10649)
                     /gene="rpoB"
                     /locus_tag="U1396_000615"
     CDS             complement(7077..10649)
                     /gene="rpoB"
                     /locus_tag="U1396_000615"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM5341825.1"
                     /translation="MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDYG
                     LKEVFEDVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLVNKE
                     TGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKVGYGS
                     TVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR
                     NTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVG
                     RYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLEKVEAQFDELNLVE
                     YIPNDNAVLLEPVLLQKFKIVAPKDPERVVTVIGNANPAENVRTVTPADILAEMSYFL
                     NLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNLRERMSVQDNEVLTPQQ
                     IINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRD
                     VHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKIDRATGTVTNEIVW
                     LTADEEDAYIVAQSTSPLDENNRFVDKIVMGRHQGNNQEFPADSADFMDVSPKQVVAV
                     ATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHD
                     GKVVYADADKVEVRREDGSLDVYHISKFRRSNSGTAYNQRTLVKLGDIVEKGDFIADG
                     PSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTK
                     LGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLL
                     HAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGVNMLVRVYIAQKRKI
                     KVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLG
                     MAARNLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVM
                     YMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQ
                     EILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDNNE
                     VELRDLDEGEDDDIIHVDDLEKARAKAAADAAAAFAAEEAEGKE"
     gene            complement(11206..13629)
                     /locus_tag="U1396_000616"
     CDS             complement(11206..13629)
                     /locus_tag="U1396_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5341826.1"
                     /translation="MATKSDKQDFKKKISALVLGDVVGVFLRTLKLLFNSVAVLVFLF
                     GLFGAGIGIGFVVSLFDDVKIPKTEELVAKVSEVSRISTVTYSDGSLVSEVNSDLLRV
                     PITSEEVSNYLKQAVIATEDETFETHNGVVPKAVLRAALGSVGLGSSSGGSTLTQQLI
                     KQQLVGDAPTFTRKANEIVSALALERNMTKEEILTIYLNVSPFGRNNQGRNIAGVEAA
                     AQGIFGKPAKDLTVPQAAFIAGLPQSPIVYSPYASDGTRKSDEDMVYGVERYQDVLFN
                     MYRASFLTKEEYETYKAYDIKQDFIAPAPVMADTKDYLYYKVMEEAQEVMFDYLVKRD
                     KVSKNDLKNDETKASYEELAKQELSQGGYTIKSTVDQGIYAAMQSVVANYGSVLDDGN
                     EYVETGSVLIDNATGAILGFVGGRDYSTNQNNHAFDTLRSPASTIKPLLAYGIAIDQG
                     LIGSASILSDYPTNFSSGQPIMYGSGRGTGMMNLQTAIDRSVNIPAFWTYKMMRNAGV
                     DAKAYMDKMNYHIPMYDIESVPLGGGVEISVLTNTNAYQTLANGGVYNKHYIVESITA
                     SDGTVVYQHEAAPVQVYSKATASIMNQLLRQVVNSGYTTTFKSRLSGLNPQAASSDFV
                     GKTGTSNEVNDVWLMLSTPRVTLGTWAGNDDNSEMYVWTGYHNNSQYVAHMVDALYNV
                     NADMFAGKFELDSSVIASSVVASTGQRAGTTQVNGRQVTVGGAMTTSYWAKNGAPVTS
                     YNFMVGGTDSDRAQAWNTIIGSQTPTSSSSTQRSSSTRSSTSSSANNTNQSSETQTAT
                     SEQANNDSP"
     gene            13783..15039
                     /locus_tag="U1396_000617"
     CDS             13783..15039
                     /locus_tag="U1396_000617"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011184085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEM5341827.1"
                     /translation="MNIFEELKARGLVFQTTDEEALVKALTEGQVSYYTGYDPTADSL
                     HLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVTKIQ
                     GQLSRFLDFENGDNKAEMVNNYDWFSDISFIDFLRDVGKYYTVNYMMSKDSVKKRIET
                     GISYTEFAYQIMQGYDFYELNDKYNVTLQIGGSDQWGNMTAGTELLRRKADKSGHVMT
                     VPLITDSTGKKFGKSEGNAVWLDADKTSPYEMYQFWLNVMDDDAVRFLKIFTFLSLDE
                     IAEIEKQFDAARHERLAQKILAREVVTLVHGEEAYNQALNITEQLFAGNIKNLSAKEL
                     KQGLSNVPNYAVQAEDNLNIVELLVTSGIVTSKRQAREDVQNGAIYVNGERVQDLDYT
                     LSDSDKIDGELTVIRRGKKKYSVLTY"
     gene            15097..15474
                     /locus_tag="U1396_000618"
     CDS             15097..15474
                     /locus_tag="U1396_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM5341828.1"
                     /translation="MTCIFCHQIEEIDILYQTEYFKVVWDIDPIQTGHLLIISKEHYD
                     TLSQIPSAVRYELSDLEVFLTGKLCQTLAIDGVTTARNDRLFDAGTHFHVHLIPRFRS
                     DGFWDQISLAQVQLDLNAFLKAL"
     gene            complement(15767..15976)
                     /locus_tag="U1396_000619"
     CDS             complement(15767..15976)
                     /locus_tag="U1396_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEM5341829.1"
                     /translation="MKQTLKLKNLSCQNCVKHVTNHFLELDGVEEVKIQLEEQLAEVE
                     TTVAYDLEQYQEVLEDTIYEVEELV"
     gene            complement(15973..16419)
                     /locus_tag="U1396_000620"
     CDS             complement(15973..16419)
                     /locus_tag="U1396_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopY/TcrY family copper transport repressor"
                     /protein_id="HEM5341830.1"
                     /translation="MEQTISAAEWQVMRVLWAQPGATSQEIIQALQEGFDWQATTIKT
                     LLGRLRKKNYLRMAKETSKYHYYPLISEEEHLQGQVELLLATICSTKQGQLVEKLLDT
                     GIFSQKSLEKLASKISQLQRTAPEQIACRCLAGQCTCGHHAKGEKT"
     gene            complement(16519..18030)
                     /locus_tag="U1396_000621"
     CDS             complement(16519..18030)
                     /locus_tag="U1396_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     AdcA"
                     /protein_id="HEM5341831.1"
                     /translation="MKKVGLLFLSVSALLLGACGNSTASEDGKLNIVTTFYPVYEFTK
                     QVAGDEANVDLLVKAGTEVHGYEPSAKDIARIQEADAFVYENENMETWVHDVEKSLDT
                     TKVNVISATEGMLLLPGGEEEHKGHDHSGERHSHAYDPHVWLSPERAITLVENIRDSL
                     VAKYPEKKDAFETNAAAYIEKLDALDAKYSETLSAAKQKYFVTQHTAFAYLALDYGLK
                     QVSITGVAADEDPTPSRLAELTEYINKYGIKYIYFEENASKSVAETLAKETGVQLDVL
                     NPLESLTDEDMKNGKDYISVMEDNLTALEKTTSQEGSEILPEEGAETAQTVYNGYFED
                     SAVKDRTLSDYAGEWQSVYPYLLDGTLDQVWDYKAKIKGGMTAEEYKAYYDTGYKTDV
                     DQINITDNTMEFVVGDKKEKFTYKYVGYKILTYKKGNRGVRFLFEATDANAGNYKYVQ
                     FSDHNIAPVKTGHFHIYFGGESQEKLLEELENWPTYYPVGLTGLEIGQEMLAH"
     gene            complement(18040..18852)
                     /locus_tag="U1396_000622"
     CDS             complement(18040..18852)
                     /locus_tag="U1396_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5341832.1"
                     /translation="MFDLSVFHYDFMQRAFLAIIAMSLFSPILGVFLILRRQSLMSDT
                     LSHVSLAGVAFGLVLGISPTLSTVLVVIVAAVFLEYLRTIYKNFMEIGTAILMSTGLA
                     ISLIVMNKSGGKSGLSLEQYLFGSIVTISQEQVIALFTIAVIVIVLTLLFLRPMYILT
                     FDEDTAFVDGLPVRAMSIAFNVVTGVAIALMIPAAGALLVSTIMVLPASIALRLGKSF
                     KAVIFTGMGIGFFGMVMGLLTSYYAETPASASITLIFISIFLLVNVVQKFKK"
     gene            complement(18845..19549)
                     /locus_tag="U1396_000623"
     CDS             complement(18845..19549)
                     /locus_tag="U1396_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM5341833.1"
                     /translation="MRYITVEDLSFYYDKEPVLEHIHYYLDSGEFVTLTGENGAAKTT
                     LIKATLGILKPKQGKVSIAEKSIKGKKLRMAYLPQQIASFNAGFPSTVYEFVKSGRYP
                     RQGWFRRLTAHDEEHVRISLESVGMWEHRDKRLGALSGGQKQRAVIARMFASDPDIFI
                     LDEPTTGMDAGTKDAFYQLMHHSAKKHGKSVLMITHDPDELNKYADRNIHLVRDQQSP
                     WRCFNVHEADEEVAHV"
     gene            complement(19550..19993)
                     /locus_tag="U1396_000624"
     CDS             complement(19550..19993)
                     /locus_tag="U1396_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent MarR family transcriptional
                     regulator"
                     /protein_id="HEM5341834.1"
                     /translation="MNRIVLEIEKYLHEIVLSSENQLEILVGSCQSTVKLTNTQEHIL
                     MLIEKAAYTNTEIAKELNVSQAAITKATKSLVAQGLLVAVRDDKDARIVRFSLTEAAK
                     PIATEHAHHHAHTLEAYEELLEHYSLEEQESIARFLSELVEKIRK"
     gene            20463..20742
                     /locus_tag="U1396_000625"
                     /pseudo
     CDS             20463..20742
                     /locus_tag="U1396_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636196.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT         5987 a         4995 c         4060 g         5812 t
ORIGIN      
        1 tcttaatgtg ttcgtgaaag ctctgcccat tggaaagcga ctgctccagg tcctgcccaa
       61 tctcccgaaa gagctgcgat tgctgctcct gcatcaagcc cacaatctgt ggcaggtcca
      121 agccttgccc aatcaaactt ccccactccc tggcgtaata ggccgtcaga tagatttgga
      181 tgagttttcc gaaaaatggc agagctgcca agcgggaaaa tgccttgatt ttgttggttt
      241 tgcgaaacca aaccatacca gccaagaccg ccaccaaact aagtccacag agggataaaa
      301 agatagtcgg cagatggtta attagcatgg tcgcagcatt gccttcctcc aactggggca
      361 gaagatagtt tttcaagcct agcataatca agaacagaaa acccagtaag ataatcggat
      421 aggtcgccac ctcaatcagc tttttacgaa ccttgctgac attttccaga taggactgga
      481 tatggctcaa actcaggctg gtattaccat gaacttctgc cagagccacc tgtgtgacca
      541 ccgcatctga aaaccgcaaa tctgccagta aactcgaaaa gggtttgcct gccagcaacc
      601 cgtctgacaa gacctgggta tagagatctg ccagaagctg actgcgtttg aggaaatcaa
      661 caatctcccc cagatgaaaa ccactagcaa aaagattatt gaaaagctca atgaccttac
      721 gctggcgagc caagggcaat tttttctgtt tctgcctgcc taagactgat atgtcctgct
      781 gcaaaaaggc gatcaatttg cgcattccac tggtctgcgg aatggttttg gtaatttccc
      841 tttgcaaaat ctaccacacc tcctcccctg attaaacgtt gataggcaat accttgaagg
      901 gcattgttta actcctcagg actgaccccc aattccaaca tacgagcata gacacccgaa
      961 atagaccttg cgtgaaccgt tgagaagacc gtcgctcctg tcagactggc tcgaatgact
     1021 gctcgagcgg tttccgcatc ccgaatttca ccgatgatga gcaagtctgg tcgatgacgg
     1081 agggacagtt tgatcagatt gtcgtaggtg gctccgatgg cttcattgag ctggagttgc
     1141 agcatgtcct cctgtttgat ttcgacagga tcctcgatgg tcaaaatctg cttgtctggg
     1201 aatttcagcc tggcaagatg gtacataagt gtggtcttac cagagccgac tggacccgaa
     1261 aaaaggtaga gccctcgtcc cttgatttct tctgcaagcc gctcagccgc ctcaaaccag
     1321 aacttgagtt ccttgtcatt gtcatagagc aagcggatca ccagactttc cttgccacga
     1381 taatctccga cagttgataa gcgaagtgaa atctctccgc taccataatc atagtcacag
     1441 gaaccctgct ggctacggcg tttttcacca acatttaaac ctgctaaaaa cttgaaatgg
     1501 ctgatgatgg ctgttacttc ctcctcagcc aagtcttgca caaactcccg ttcatccatg
     1561 atgcgatgat aaacttgata gctttccccg cgaggaacca gataaatgtc actgacccta
     1621 tccgccactg ccttttcaat caactttctt gctttttctt gaatcataaa acctcctcac
     1681 cctatctatt cgcaaggaaa cttgattttc catacttttt tgttaaaata ataaaaaaac
     1741 ttggaggttc ctatgaaaac attaaaaaaa ggcgaccaca tacatgtagt cagtccctct
     1801 tcatctattg aaagaattgg tggttttgaa gccaatcttg ccgccaagga aaaattggaa
     1861 gacctgggct tcaaactctc tttctcagaa cattattttg aaaacgatat tttcgattcc
     1921 gctccaattg ccagtcgtgt tgcggacttg gaagtagcct ttgcggatga gtcagtcgat
     1981 gccattctga caaccattgg cggtttcaac tgcaacgaac tcttgcccta tctggatttt
     2041 gacctaattg cgcgtcatcc aaagattttc tgtggttatt cggacacaac tgccctgctc
     2101 aacgccatct acgccaagac aggcatgcca acctacatgg gtccagctta ttcaagtttc
     2161 aaaatggatt tggggcaaca gtatcaaaca gaagcctggc tcaaggctgt gacacaagac
     2221 tcctttgact tgaccccgag tccagaatgg tctagcgacg cttggtacct accagacgcc
     2281 cctcgcacct tttacccaac agaatggaaa gtctacaatc caggccaggc ctctggtatt
     2341 gccattggcg gaaacatctc aaccctcaac ctgctgactg gaacagagtt tgctcccaga
     2401 ccagacgaat atattctatt tttagaggag gcggaagacg acgattatct cattatcgct
     2461 cgtcacttga ctacactttt acaagcctat ccaaatccac aggctcttgt cttcggtcgt
     2521 tttcctaaag agaccaagat gacggagaag attttgctgg cgattttgga caagcaccct
     2581 attctcaaaa ccatcccagt tctctacgat ttggattttg cccataccca gcctctgttt
     2641 accattacaa tcggtggtca agtggagctc gacaccaaag ccttttctat cagattcagc
     2701 taaaaaggat tgacccgcaa aggtcaatcc tcttttatta ttcatttacg caattatttt
     2761 gttttaattt gcaggggcgt acacgaggtt gcgtaggttg cttaataaaa ccagccggta
     2821 aattttctct cgcttctacc aacatcagcg aatgataccg ctgcaaatat tcatcgcatt
     2881 cctcgcacca atgctggtct gattcatccc aaaaagccac catcgttcca ttcttacttt
     2941 tcttcattgg aaaatcctct gatagccgta cccactcttt ttgaaaggca ttcagtgcat
     3001 cctcatagcg atcaaaagca gccctactgg taacatcctc ttcccaacca tctaagaacc
     3061 accagggctc aaaatctcca tacattttaa ttacttgata cataacacat acttcctttt
     3121 tcgtacacat tataccgaat tcgtctgatt taagaaaaca ttctgcttgt taattcctta
     3181 tcaagttgtg tgagcgcttt atttctgaac gaaagaaaac acatccctca gaaagagatg
     3241 tgtctcaaat cttattcagt tacagcttca agctctgctt ctgctgcaag ttcttcagca
     3301 actgtgtctt caatgatttc aacttcattg atggcttgtg gttcaagatt acggtagcgg
     3361 gccatacctg tacctgctgg gataatctta ccgataataa cgttctcttt aagaccgaga
     3421 aggttgtcac gtttaccacg gatagcagca tctgtaagga cacgtgttgt ttcctggaag
     3481 gatgcggcag acaagaatga gttggtttca agagacgctt ttgtgatacc cataagaact
     3541 ggacgagccg ttgctggaac accaccagcg atgacagttt ccgcattggc atcagtaaag
     3601 tctgagatat ccatgagggt acccatgagc aggtctgtat ctcctggatc catgacacga
     3661 actttacgaa gcatttgacg aaccattacc tcgatgtgct tgtcgccgat ttctacaccc
     3721 tggctacggt aaactttttg aacttcagaa agaaggtaag tttcaaccgc caagacatca
     3781 cggacttcaa gcaagcgttt tggttggata gaaccttcgg taagggcggc tccacgcgcg
     3841 acttggtcac caacttcaac cttcatacgg gctgtaaatg gaaccacata ttcgccttcg
     3901 ccagttttac ccttaacaaa gactttcttg gtacgagtag aagcatcttc ttcaatagcg
     3961 ataacttcac ctttaacctc agtgataacc gcttcccctt tcggattacg ggcttcaaag
     4021 atctcttgga cacgaggaag accctgcgta atatcgctgt ttgaggctac accacccgtg
     4081 tggaaggtac gcattgtaag ctgtgtacca ggctcaccga tcgattgggc agcgattgta
     4141 ccaactgctt cacccacttc aaccgcatca cctgttgcca agttgatacc ataacaatga
     4201 cggcagacac cgtgacgagt gttacatgta aatacgctac ggatagttac ttgttcaaca
     4261 cctgcattga cgatttcacg ggcaatatct tccgtaatca attggtttgg accaatgata
     4321 acggcacccg tttcaggatg tttaacagtt ttcttagtgt aacgaccttg caaacgctct
     4381 tcaagtggct cgatcatttc cttgccatct gtgattgaac ggatgtcaag accacggtct
     4441 gttccacagt cgtcttcacg gataataacg tcttgggcaa cgtcaaccaa acgacgagtc
     4501 aagtaacctg agtcggctgt cttcaaagcc gtatccgtca tccccttacg ggcaccgtga
     4561 gttgagaaga acatttccaa aacagaaaga ccttcacgga agttagacaa gataggcaat
     4621 tccatgatac gtccgttcgg agctgacatc agaccacgca taccggccaa ctgggagaag
     4681 ttggaaatgt taccacgggc accagagtcc atcatcataa cgattggatt cttcggatct
     4741 tgtttttcaa ccaggcgttt ttccaatttt tccttagctg aacgccattc atctgtaaca
     4801 gctgcataac gctcatcgtc tgtaatcata ccacgacgga attgtttctt gatttgttct
     4861 acacgttcgt gagattcttc aatgatttca gccttgttgt cgataactgg gatatcggca
     4921 atacccactg tcaaaccagc gagtgttgag tgataataac ccaagtcttt caaacggtca
     4981 agaagggctg atgtctcagt tgtacggaaa cgcttgaaga tttcagcgat gatgttacca
     5041 agatttttct tcttgaatgg tgggttgatt ggcaattctg caatggcagc cttgatatct
     5101 gaacctgatt ccaagaagta tttatcagga gttccttctg tcaagttagc attgtttggc
     5161 tcttgcaagt atggaagacc ttctggcata atcgcgttga acaagatttt tccgacagtt
     5221 gtcatcataa tcttgtgttt ttggttgtct ttccaaggtt tatcaaggct atccgttgcg
     5281 ataccaacac gagtatgcaa gtgaacatag ccattgcggt aagccataac agcctcatcc
     5341 gcatccttga agaccatacc ttcaccttca cgaccagcat cttccatggt caagtagtag
     5401 ttacccaaaa ccatatcctg agatggtgtt acgacaggtt taccatcttt agggttaagg
     5461 atgtgttctg ccgcaagcat aaggatacgt gcttctgctt gtgcttcttc tgacaatgga
     5521 acgtgaatcg ccatctggtc accgtcgaag tcggcgttgt aggcttcaca gacaagcggg
     5581 tgcaaacgaa gggctttacc gtcgatcaga actggctcaa aagcctggat acccaaacgg
     5641 tgaagggtag gtgcgcggtt caaaagaact gggtgttctt tgatcacttc ttccaagata
     5701 tcccagatac gatcatcccc acgttcaatc aaacgttttg cagcttttac gttaccagca
     5761 atatcacggg caacgatttc gcgcataaca aacggtttga agagctcgat agccatttcg
     5821 cgtggcacac cacattggta cattttaagc gttggaccaa cagcgataac ggaacgtcct
     5881 gagaagtcaa cacgcttacc aagcaagttt tgacggaaac gtccttgctt acctttaagc
     5941 atgtggctga gtgatttaag tggacggcta cctggtcctg taattggacg accacggcga
     6001 ccgttgtcaa tcaaagcatc cacagcttct tggagcatcc gtttttcgtt ttgtacgatg
     6061 atacctggag cgttaagttc caagagacga gccaaacggt tgttacggtt gataacacgg
     6121 cggtagagtt cgttcaagtc agacgccgca aaacggccac catccaactg aaccatcgga
     6181 cgcaaatctg gtggaataac tggaaggatg ttgagaatca tccactcagg cttgttacca
     6241 gatttgtaga atgcatccaa tacatctaag cgacgaactg ctttaatgcg tttttgacca
     6301 gaagctgttt tcaattcttc tttcaaagct gcgatttctt ttggaagatc gacttgtttc
     6361 aagaggtctt ggatggcttc tgcacccatt ttagcaacga atgaaccata accatattca
     6421 cgcaaacgct cacggtattc gcgctctgtc atgattgact tgtgctcaag cggtgtatct
     6481 ttaggatcaa tcaccacgta agccgcgaag tagataactt cctcaagcgc acgtgggctc
     6541 atatccaagg tcaagcccat acgacttgga atacctttga aataccaaat gtgtgaaatt
     6601 ggtgctttca actcaatgtg tcccatacgt tcacgacgta cttttgcacg agtcacttca
     6661 acaccacagc ggtcacaagt aatcccttta taacggatac gtttgtattt accgcatgaa
     6721 cactcccagt cttttgttgg accgaagatg acttcgtcaa aaagtccatc acgttctggt
     6781 ttaagtgtac gatagttgat tgtttcaggt tttttaacct caccgtaaga ccatgaacga
     6841 accttacttg gtgaagctaa cgtgatttgc atacttttaa atcgatttac gtcaaccact
     6901 aataatccct ttcttttctt gtgagaggtt ggattcccag acctcaaatt cttgaacaat
     6961 aatcagcaga atggatagct ggtaagctat ttttctataa atcagacggt ggaagaccgt
     7021 cggcccttat ctatttcagt tctgaggttt ggaccaactt gttccatcca ttctaattat
     7081 tctttgcctt ctgcttcttc tgctgcaaag gctgcggctg cgtcagctgc ggcttttgca
     7141 cgtgcttttt caagatcatc tacgtggatg atgtcatcat cttcaccttc atcaaggtca
     7201 cgcaactcta cttcattgtt gtcttcatca aggacacgca tatccaaacc aagtgattgc
     7261 aattctttga caagaacgcg gaatgattct ggaacacctg gttttggaat tggtttacct
     7321 ttggtgatgg cttcataggc tttaagacgg cctgtcacat catctgactt ataagtcaag
     7381 atttcttgaa ggacgtttga agcaccgtag gcttcaaggg cccaaacctc catctcaccg
     7441 aaacgctgac caccaaactg agccttacct ccgagtggct gttgggtaac gagtgagtat
     7501 ggtccgactg agcgggcgtg gagtttatca tcaaccatgt ggtgaagctt gatcatgtac
     7561 atgacaccga cagatacacg gttgtcaaat ggctcacctg tacgtccatc gtaaagaatg
     7621 gttttggcat ctgaatccat acctgcttct ttaacagttg accaaagatc ttctgaactt
     7681 gcaccatcga aaactggtgt tgcgatatgg atgcccaagt tgcgagccgc catacccaag
     7741 tgaagttcca taacctgacc gatgttcata cgtgatggca ccccgagtgg gttcaacatg
     7801 atgtcaactg gtgttccgtc tggaagatat ggcatatcct caacaggtac aatacgtgaa
     7861 acgacaccct tgttaccgtg acgaccggcc atcttatctc cgaccttgat cttacgtttt
     7921 tgagcgatgt aaacacgaac caacatgtta acacctgatt gcaattcatc accgttggca
     7981 cgagtaaaga ttttcacatc acgaacgaca ccatcggcac cgtgaggtac acgaagagag
     8041 gtatcacgta cttcacgtga cttgtcaccg aagattgcgt gcaagagacg ctcttcagca
     8101 gaaagatctt tttcaccttt tggtgtaact ttaccaacaa gaatgtcgcc ctctttaact
     8161 tcggcaccaa tacggataat acccatttcg tccaagttgc gaagagcatc ttcaccaacg
     8221 tttggaattt cgcgagtgat ttcttcaggg cctaacttgg tatcgcgtgt ttctgattcg
     8281 tattcttcca agtgaacaga tgtatagaca tcgtccttca caaggcgttc agacatgata
     8341 accgcatcct cgaagttgta accttcccaa gtcatgtagg caacgatagg gttttgacca
     8401 agagccattt ccccattttc catagaaggg ccatctgcga tgaagtcgcc tttttcaacg
     8461 atgtcgccca attttacaag ggtacgttgg ttgtaggcag taccagagtt tgaacgacgg
     8521 aatttagaaa tgtggtagac atcaagcgat ccatcttcac gacgcacttc taccttgtcc
     8581 gcatctgcgt aaacaacctt accatcgtgt tgagcgataa ttgccgcacc tgagtcgtga
     8641 gcagcctggt attccatacc agtaccaacg taaggtgctt ttggatcaat caatggaaca
     8701 gcctgacgtt gcatgttggc ccccatgagg gcacggttgg agtcatcgtt ttccaagaaa
     8761 ggaatacatg ctgtcgcaac ggcaactacc tgcttaggtg aaacgtccat gaaatctgct
     8821 gaatctgctg ggaactcttg gttgttacct tggtgacgtc ccataacaat cttatcaacg
     8881 aaacggttgt tttcatcaag tggcgatgtt gattgggcta caatataagc atcttcttca
     8941 tcggctgtca accaaacgat ctcatttgta actgtaccag ttgcacggtc aatcttgcgg
     9001 tatggtgttt ggatgaaacc atacttgttg agatgcccat aagatgacaa gttgttgatc
     9061 aaaccgatgt ttggtccctc aggcgtttca atcggacaca tacgaccata gtgagtgtag
     9121 tgaacgtctc gaacctcata accagcacgg tcacgagtca aaccaccagg tcccaaggct
     9181 gacaaacggc gtttgtgaga caactcagaa agtgggttgt gttggtccat gaactgtgac
     9241 aactgagatg aaccaaagaa ttctttgatt gcggctgtaa caggacggat attgatgatt
     9301 tgttgtggcg tcaatacttc attgtcttga accgacatac gctcacgcaa gttacgttcc
     9361 atacgagtca aaccgatacg tacttggtta gcaagcaatt caccaacggc acgaatacga
     9421 cggttaccca agtggtcaat atcatctacg cgaccaagtc cttcagccaa gttgaggaag
     9481 tagctcattt cagccaagat gtccgcaggt gttactgtac gtacgttttc tgctggatta
     9541 gcattaccaa tcaccgtcac aacacgttct ggatccttag gagctacaat cttgaatttc
     9601 tgcaaaagaa ctggctcaag aagaacagcg ttgtcatttg gaatatattc taccaagttg
     9661 agctcatcga attgtgcttc tactttttca agcacatcac gactcaatac agtaccagct
     9721 tccaagacga tttcgcctgt ctcaccgtta atcacatgct cagcaagtgt ttggttgagc
     9781 aaacgagtac ggaggttgag ttttttatta atcttgtaac gaccaacagg tgccaaatcg
     9841 taacgacgtg ggtcaaagaa acgagctgtc aaaaggctac gagagctttc agctgtcttt
     9901 ggttcacctg gacgaaggcg ctcatagatt tccttaagcg cttcatccgt acgagaatct
     9961 gctgggtttt tatgaatatc tttttcaatg gtattgcgaa ccaattcgct atcaccgaag
    10021 atgtcaaaga tttcatcatc gcctgagaaa ccaagcgcac gaacaagcgt tgtgaacgga
    10081 atcttacgcg tacggtcaat acgagtgtag gcaatgtctt ttgaatctgt ttccaattcc
    10141 aaccaagctc cacggttagg gataaccgtt gaaccataac ctactttacc gttcttatct
    10201 actttatcat tgaagtagac acctggtgaa cgaaccaact gagaaacgat gatacgctct
    10261 gcaccgttga tgatgaaggt acccatttca gtcatgattg gaaactcacc gaagaagact
    10321 tcttgtgtct tgatctcgcc agtttcttta ttcaccagac ggaaagttac atagattgga
    10381 gctgagtagt tcgcatcatg cgcacgcgcc tcttccaatg tgtatttagg ctctttcaat
    10441 tcataaccaa cgaattccaa ttccatggta tccgtaaagt ttgaaactgg aagtacatct
    10501 tcaaagactt ctttcaaacc ataatctaaa aagtcttgga aagagtccgt ttggatttca
    10561 atcaaatttg gtaaatcaag aacttccttg attcttgaaa aactacgacg ggtacggtgc
    10621 ttaccgtact gaacttcatg tcctgccaaa agttttctcc tttgtattaa gatactaagc
    10681 cgtaaacaac tcaaagaaaa ataggaaaca cgacgacgga ggcaagcctc ctaggagctg
    10741 tttatctttt ttcacagagt tgtaggcgag ttcaattaaa agatacgaga ccgtgaaaac
    10801 caaagtgaaa ataagcggta agtccaaaat ctttgatttt gttgacgcac cctcgtcaga
    10861 acgactagga ctttcttgac aaatcgtcga agaaaggcca gacgtttacg acgttgggag
    10921 tgacaaacca aagtaaatat ttcatacact ttttcacaca ggttttagcc cgagttcaat
    10981 tatatacagc catgtgatga ccaacattca tcctttttct gaatttttag aatctttaag
    11041 aatagataac aattctcaaa aaaattcctc atagacacaa aaagagcagc taaatcttcc
    11101 tttgaaaaag tttgatttaa ctgctgcaag ccttgtttgg acaatatttc aaacaagaca
    11161 cacgacaaat aatttacact attatagcac aagtactagg aaaaatcaag gtgaatcatt
    11221 attcgcttgc tcactagttg ctgtttgcgt ttctgatgac tggttcgtgt tattagctga
    11281 agaactcgtg ctactccgag tcgaactgct tcgttgggtt gagctacttg atgttggcgt
    11341 ttgggaaccg ataattgtat tccaagcctg tgctcggtca ctatctgtcc ccccaaccat
    11401 gaagttatag ctcgttactg gtgcaccatt tttagcccaa taactagttg tcatcgcacc
    11461 accaactgtt acttggcgcc catttacctg tgtcgtccct gcacgttgac ctgtagaagc
    11521 aacgacacta gaagcaataa cactactgtc taattcaaat tttcctgcga acatatccgc
    11581 attaacattg taaagcgcat caaccatatg ggccacatat tgtgaattat tgtggtagcc
    11641 tgtccagaca tacatttctg agttatcatc attcccagcc caggtaccta aagttactct
    11701 aggggttgat agcatgagcc acacgtcatt aacttcatta cttgtccccg tcttaccgac
    11761 gaaatcagat gatgctgcct gtgggtttaa accactcaat cgactcttga acgtcgtagt
    11821 ataaccagag ttgacaacct gtctcaaaag ctggttcata atacttgcag ttgctttaga
    11881 atagacctga accggagccg cttcatgctg atacactact gttccatcag aggcagtaat
    11941 actctcaacg atgtaatgtt tgttataaac gccaccattt gccaaagttt gataggcatt
    12001 ggtatttgtc aatactgaaa tttcaacacc accgcccaac ggtacacttt caatatcgta
    12061 cataggaata tgataattca ttttatccat gtacgctttg gcatctacac ctgcatttct
    12121 catcatctta taggtccaaa aagcaggaat gttaacagaa cggtcaatag ccgtctgtaa
    12181 gttcatcata ccagtaccac gtcctgaacc atacataatc ggttgtccac ttgaaaagtt
    12241 cgttggataa tcggaaagga tgctggcaga acctatcaaa ccttgatcaa tcgcaatacc
    12301 gtaagctaac agaggcttga tggttgacgc tggcgaacga agagtatcaa aggcatggtt
    12361 attttggttg gttgaataat cgcgaccacc cacaaatcct aaaatggctc ctgtggcatt
    12421 atcaattaac acactacctg tctcgacata ttcgtttcca tcatccaaaa cagagccata
    12481 atttgccaca acagactgca tcgccgcata gattccttga tcaacggtac tcttaatcgt
    12541 gtagccacct tggctcaatt cttgcttggc caactcctca taggatgcct ttgtttcatc
    12601 atttttcaag tcatttttag aaaccttatc gcgttttacc aggtaatcaa acataacctc
    12661 ctgcgcttct tccatgacct tgtaatagag ataatctttc gtatccgcca ttacaggagc
    12721 tggagcaata aaatcttgtt taatatcgta ggctttatag gtttcgtatt cttccttggt
    12781 caagaatgac gcccgataca tattaaagag aacatcttga tagcgttcaa caccgtaaac
    12841 catatcttca tctgatttac gtgttccatc tgatgcatag ggagaataaa caatcggact
    12901 ttgaggcaag cctgcaataa aagcagcctg cggaacagtc aagtctttcg ctggtttacc
    12961 aaaaattccc tgagccgcag cttctacccc tgcaatattt cgtccctgat tatttctacc
    13021 aaatggagaa acatttaagt aaatggtcaa aatctcttcc ttggtcatat tccgctctaa
    13081 tgccaaagcc gaaacaatct cattagcctt acgcgtaaag gttggagcat ctccgacaag
    13141 ttgctgtttt atcaattgct gcgtcaaggt tgaaccaccg ctagatgaac ctagaccaac
    13201 tgatcccagt gccgcacgca aaacagcctt aggcacaacc ccattgtggg tttcaaatgt
    13261 ttcatcctct gtcgcaatta cagcctgttt tagataattc gagacctcct ccgaagtaat
    13321 aggtacgcga agcagatctg aattaacttc cgacaccaag ctaccatccg aataggtaac
    13381 ggtggaaatc cgactaactt ctgaaacctt cgctaccagt tcctctgttt tgggaatctt
    13441 aacgtcatca aaaagactaa ccacgaaacc aattcctatg cccgcaccaa aaagaccgaa
    13501 taggaacacc aagacagcta ctgaattgaa taataatttc agcgtccgaa ggaaaactcc
    13561 tactacatcc cctaagacta gggcactgat tttcttttta aaatcttgct tatctgattt
    13621 agtcgccata ttaactcctt atcgttccat tataccaaat tttgtttatt ttccgcaatt
    13681 tcgtggtata atagggagga attttttaaa atgaagttcg gtccaaaaat catataaaat
    13741 ggtttatggt cctgtatatt aaacctaaag gagacagccc acatgaacat ttttgaagaa
    13801 ctaaaagctc gtggcttggt ctttcaaacg acagacgaag aagccttggt aaaagcattg
    13861 acagaaggac aggtttctta ttacacagga tacgatccaa cagcagatag tttacacttg
    13921 gggcacttgg ttgctatctt aactagccgt cgcttgcagt tggcaggcca caagccttac
    13981 gccctagttg gcggtgcaac tggtctgatt ggcgaccctt ccttcaagga tgcggagcgt
    14041 agcttgcaaa ccaaagacac cgtggacggc tgggtaacaa aaatccaagg tcagctttct
    14101 cgcttcttgg attttgaaaa tggtgacaac aaggctgaaa tggtcaacaa ctacgactgg
    14161 ttctcagaca tcagctttat cgacttcctt cgtgatgttg gtaaatacta cacggtcaac
    14221 tacatgatga gcaaagattc tgtgaaaaaa cggattgaaa cagggatttc ctacaccgag
    14281 tttgcctacc aaatcatgca gggctatgac ttctacgagc ttaatgacaa gtacaatgtg
    14341 accctacaaa tcggtggttc tgaccagtgg ggcaacatga cagccggtac tgaattgctt
    14401 cgccgcaagg ctgacaagtc tggtcacgtg atgactgttc ccctcatcac tgactcaaca
    14461 ggtaagaaat ttggtaagtc tgaaggcaac gctgtttggt tggatgccga caagacttct
    14521 ccgtatgaaa tgtaccaatt ctggctcaat gtcatggacg atgatgccgt tcgtttcttg
    14581 aagattttta ctttcttgtc attagatgaa atcgctgaaa tcgagaaaca atttgacgct
    14641 gcccgtcatg aacgcttggc tcagaagatt ttggctaggg aagtcgtgac attggttcac
    14701 ggtgaagagg cttataacca agcccttaac atcaccgagc aattgttcgc aggcaatatc
    14761 aaaaacctat ccgcaaaaga actcaaacag ggcctcagca acgttccaaa ctacgctgta
    14821 caggctgaag acaaccttaa catcgtggaa cttctagtta cctctggtat tgtcacttca
    14881 aaacgccaag ctcgtgaaga tgtgcaaaat ggtgccattt atgtcaacgg tgagcgtgtg
    14941 caggacttgg actataccct ttctgacagt gacaagattg acggcgagct gaccgttatc
    15001 cgtcgtggga agaagaagta ttctgtgttg acttattaag atttttcaag gaaatccacc
    15061 atgatttcct tttgttctat caataggaga acagctatga cctgtatttt ttgccatcag
    15121 attgaagaaa tagatattct ctaccagaca gaatatttca aggtggtctg ggacattgac
    15181 cctattcaaa cagggcatct actgattatc agcaaggaac actatgacac gctcagccaa
    15241 atcccttctg ctgttcgcta tgagctatcg gacttggaag tctttttgac tggaaaactc
    15301 tgtcaaacat tggcaattga cggtgtgacc acagcccgca acgatcgctt gtttgatgct
    15361 ggcacccatt tccatgtcca cctgattcca cgctttcgat cagacggctt ctgggaccaa
    15421 atttcacttg cacaagtaca gcttgacctg aacgcctttc tcaaagcatt ataaaaagca
    15481 gcccaacggc tgctttttcg cttatatagt cgtttagttt acttttagta caaggcaacg
    15541 agccgcaggc ataactcaat gctttcttgt ttctaggaga ccagctgatg tacttcgctt
    15601 ttttgttttc aggctcaggt acgaatagtc caccggacta ttcgtatccc ccagactgtt
    15661 tcaatcaggc aaggcgagtt caaacactcc agtggagtgt ttgaagttgg aaataaggaa
    15721 acgacgtttc ctcgctcgtc gaagtaataa aagagaaact aaatgactat accaactctt
    15781 ccacttcata aatagtatct tccagcacct cttggtactg ttccaagtca taggctacag
    15841 tggtttccac ctccgccaac tgctcttcca gctggatttt cacctcttcc accccatcca
    15901 actccaagaa gtgattggtc acatgcttga cacagttttg gcacgataag tttttcaatt
    15961 tcaaagtttg cttcatgttt tttctccttt tgcatgatgc ccacaggtac attgccccgc
    16021 caagcaccga caagcgattt gctcgggtgc agtcctttgt aactgcgaga ttttgctggc
    16081 cagtttttct aggctttttt gagaaaatat ccctgtgtct agcagttttt caaccaattg
    16141 cccctgtttt gtggaacata tggtagctag taagagctcc acctgcccct gcaaatgttc
    16201 ctcttcactg atcagcggat aatagtggta tttgctggtt tccttggcca ttctcaaata
    16261 gtttttcttc cgcaaccgcc ccaagagtgt cttaatggtc gtcgcctgcc aatcaaagcc
    16321 ttcctgcaag gcctgaataa tttcctgaga agtcgcccca ggttgcgccc aaagaacccg
    16381 cataacctgc cactccgcag ctgaaatcgt ctgctccaca ctctcacctc cagccaatca
    16441 gatttctaaa tttagtttac acttgtagtc aaattctgtc aagaagaaag actgaacatc
    16501 ttgcccagtc ttactctctt agtgagccaa catttcctga ccaatttcca aaccagtcaa
    16561 accaactgga tagtaggttg gccaattttc caattcttcc aagagttttt cttggctttc
    16621 tccaccgaaa tagatatgga agtgacccgt tttaacaggt gcaatattgt ggtcgctaaa
    16681 ttgaacatac ttatagttac cagcatttgc atccgttgct tcaaacaaga aacgaacacc
    16741 acgatttcct tttttgtaag tcaaaatctt atagcctaca tacttatacg tgaatttttc
    16801 tttcttatct cccactacaa attccatggt attatctgta atgttaattt gatcaacatc
    16861 tgttttgtag ccagtatcgt aataagcctt gtactcttca gctgtcatac cacctttgat
    16921 cttagccttg taatcccaga cctgatctag tgtaccatca agcaagtatg gataaacaga
    16981 ttgccactca cctgcataat ctgaaagagt acgatctttt acggcactat cttcaaaata
    17041 accgttataa acagtttgcg cagtctcagc accttcttct ggcaaaattt cagaaccttc
    17101 ttgggaagtt gttttttcaa gggcagtcag attatcttcc ataacagaaa tataatcctt
    17161 accatttttc atatcctcat ccgtcaaact ttcaagagga ttaagaacat ccaactgaac
    17221 cccagtctct ttagcaagtg tttctgcaac agattttgac gcattttctt caaaatagat
    17281 atatttaata ccatatttat taatatactc tgtcaattct gctagacgtg atggagtcgg
    17341 atcttcatcc gcagcaacac ctgtaataga aacttgtttc aaaccatagt ccaaagccaa
    17401 atatgcaaat gcagtatgtt gtgtaacaaa gtatttctgt ttcgcagcag ataatgtttc
    17461 agaatattta gcatccaaag catctaattt ctcaatatag gctgccgcat ttgtttcaaa
    17521 ggcatctttc ttttctgggt atttagctac caaactatca cgaatatttt ctacaagtgt
    17581 gatggcacgc tcaggagaca accatacatg cggatcataa gcatggctat gcctctcccc
    17641 actatggtcg tgacctttat gttcctcctc accgccaggc aaaagcaaca tcccctccgt
    17701 cgcactaatc acattaacct ttgttgtgtc aagtgatttt tcaacatcat gaacccatgt
    17761 ttccatattc tcattttcat aaacaaaagc atctgcctct tggatacgag caatatcttt
    17821 agctgacggc tcataaccat gaacctctgt cccagcctta accaacagat caacatttgc
    17881 ctcatcacct gccacctgct tggtgaactc ataaacagga taaaaggtcg ttacaatatt
    17941 caacttccca tcttcagaag ctgtgctatt gccacaagcc cccaaaagca aagctgagac
    18001 agacaagaat aataaaccaa cttttttcat cttaactcct tattttttaa atttttgaac
    18061 aacattcacc agtaagaaaa tactaatgaa aatcaaggta atacttgcac tcgctggggt
    18121 ttctgcatag taagaagtca gcaaccccat gaccattcca aaaaagccaa tgcccatccc
    18181 agtaaagata acagctttaa aactcttacc aagtcgcaat gcaatagaag caggcaaaac
    18241 cataattgtt gaaaccagca aagcacctgc cgcaggaatc attaaggcaa tggcaacacc
    18301 agtcaccaca ttgaaggcaa tggacatagc tcgcacaggt aacccatcta caaatgccgt
    18361 atcctcgtca aaggtaagaa tatacattgg acgtaaaaac agcaatgtca gcacaatgac
    18421 aatcacagca atcgtaaaca aagcaattac ttgctcctga ctaatggtca ctatcgaacc
    18481 aaacagatat tgttccagac taagccctga tttcccacca gatttattca tgacaatgag
    18541 cgaaatagcc aaaccagtcg acatgaggat agccgtccca atttccataa aattcttgta
    18601 aattgtccgc aaatactcta aaaatacagc tgccacaata acgacaagaa cagtcgaaag
    18661 cgtcggtgaa atccccaata ccaaaccaaa tgcaaccccc gccaacgaaa catgactaag
    18721 agtatccgac atcaaactct gccgtctaag tatcaaaaag acccccaaaa tgggcgagaa
    18781 cagactcatc gcaatgattg ccaggaaagc acgctgcata aagtcataat gaaatacaga
    18841 tagatcaaac atgggcaacc tcctcatccg cttcatgaac attgaaacaa cgccaaggag
    18901 actgctgatc acgaaccaag tgaatatttc gatcagcata cttattcagc tcatcaggat
    18961 catgagttat catcaaaacc gactttccat gcttcttagc cgaatggtgc atgagctggt
    19021 aaaaagcatc cttggtccct gcatccatcc ctgttgtcgg ttcatccaga ataaaaatat
    19081 ctggatcaga ggcaaacata cgcgcaatga ccgcacgctg cttctgccca ccactcaaag
    19141 cacctaagcg cttatcccga tgttcccaca ttccaactga ttccaaacta atccgaacat
    19201 gttcctcatc atgggctgtc aaacgacgaa accaaccttg tcgaggataa cgccctgatt
    19261 ttacaaattc gtaaaccgtg ctcggaaaac cagcattaaa acttgcaatt tgctgaggta
    19321 aataggccat tcttagcttc ttacccttta tactcttctc agcaatagaa accttccctt
    19381 gtttgggctt caatatcccc aaagtcgcct taatgagggt tgtcttggct gcgccattct
    19441 caccagtcaa agtcacaaat tccccactat caagataata atgaatatgt tctaaaaccg
    19501 gttctttgtc gtagtaaaac gacaagtctt ccacagtaat atatctcatc tattttctaa
    19561 tcttctccac taactcactt aagaatcgag caattgactc ctgctcttca agactataat
    19621 gttccaaaag ctcttcataa gcttccaagg tatgcgcgtg atgatgagca tgctctgtag
    19681 caatcggctt agcagcctca gtcaaactaa agcgaacaat acgagcgtcc ttatcatctc
    19741 taaccgccac caataacccc tgagcaacta atgactttgt agccttcgtg atcgcagcct
    19801 gactaacatt caactcctta gcaatctcag tattagtata tgcagccttt tcaataagca
    19861 tcaaaatatg ctcctgcgta ttcgtcaact tcaccgtgct ttgacaagaa ccaaccaaaa
    19921 tctccaattg attctccgaa ctcaaaacaa tctcgtgcag gtacttctca atctctaata
    19981 caatacgatt cataggcatc cccttaacct tttaattaac ttgttaagta taccacatag
    20041 aaaacaaaaa aacaaggaaa atatttgaaa gctaaattcc caaagtaagt tctagtctga
    20101 ctcgaaaact agaaactaga ctgagacgaa aaaataaggt agaacttgag aacaataaag
    20161 tacgtttaga attaaagagt ttagttgaaa atggtaaata aaaattactc tttacagtcc
    20221 tattctttac aggtctaaga cttagagaag cactcgcact aacacggcaa gatatcgaac
    20281 tttcgagcaa tacaattcat atcacaaagt ctgtatacgt taataaaggc ataagccata
    20341 tcagtgcaac ttaaactaaa gcaggaacta gaagaaatat catcaataaa aaattaagtc
    20401 aagaactgca atattggtaa cagcaacaaa aacatctatt agagcagttt acaagtgata
    20461 gcatgagcct acaagtgttt caaagtaatc ccattacgat tacaaaaatt caatagaaag
    20521 cagtacaaaa aaattcttga tcgtgatgcg gctcttaaaa agatacgcat acacgatttt
    20581 aagcactcac acgcttctct attgataaat cgaggggaag attatttagt tgtgaaagaa
    20641 aggctaggac acgcttctat aacaactaca atcgatacct attctcactt gtatccaaac
    20701 aagcaaaaag atttagctga taaattagat gacctaattt aaggctttat atttacagta
    20761 ctatcaaata aaggaatatg gaatttatta tcctctaaaa attttgatac tttcaactta
    20821 tcttcagcag agcatctttt accaaacgta attg
//
LOCUS       DASGBY010000022        20575 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.022, whole genome shotgun sequence.
ACCESSION   DASGBY010000022 DASGBY010000000
VERSION     DASGBY010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20575
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.022"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(97..1089)
                     /locus_tag="U1396_000626"
     CDS             complement(97..1089)
                     /locus_tag="U1396_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5341835.1"
                     /translation="MNKDDFGSLVPGFLTSWLGHRLIFLIAYAVFAVAILAYSSLFDI
                     KRNLVFYAILLLSICWLLALLWDFVREFSRFGKIWRGQKVATGTASERLLQEKVQWLE
                     VQNKKILEKQRQEQTELDDYYTLWAHQMKTPIAASQLLVKEVDSSPVRHQLETELFKI
                     EQYTGLVLNYLRLQSFHDDLVIESVNLDELVRNLVRKYSLFFIQVNTSLDLGQLDRTV
                     KTDKRWLGLLIEQILSNALKYCQGGSVSIFLDGDELVIRDTGIGIAESDLERVFERGF
                     SGFNGRRTQQSSGLGLYLSRKIAAELGYSLKLKSKVGRGTEVRIGIKEVELIFD"
     gene            complement(1082..1765)
                     /locus_tag="U1396_000627"
     CDS             complement(1082..1765)
                     /locus_tag="U1396_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5341836.1"
                     /translation="MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEF
                     QPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSSHDQPMDIVMAINMGADDYVTKP
                     FEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
                     RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGV
                     GYGLVWTHE"
     gene            1935..3104
                     /locus_tag="U1396_000628"
     CDS             1935..3104
                     /locus_tag="U1396_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM5341837.1"
                     /translation="MPNLLTYIEETQYDNFYDKPINKLDILALTELSYLPFDNLVPYS
                     FTENGVRLDRLAAAFEETYKNNFPPFSMVTKNRLALLGLLAKSKRFKSIKAFGFVDDY
                     QLEQEQQFSAISYRLDRQTILTAFRGTDDTIIGWKEDFHMTYMDEIPAQRAASGYLEK
                     LMMQQGGQFYLAGHSKGGNLALYAACQQATDQQDRILAIYPFDSPGLHKKHLEAPSYQ
                     AIHQRIFPVIPQNSIVGMMLETPENAQIVQSNTLGILQHISFSWEVDGSDFKLAPALT
                     SDSLQTDQALKTWTASLTDDELRDFFDLFFGIFIKAGIERFSDITVNPLQKLQEIDRL
                     RKEIAPEEAEMVDKLIRLLFDTRYQIWRDNIPSPEISLPDWWKLFQRNTTENKGN"
     gene            complement(3119..4243)
                     /locus_tag="U1396_000629"
     CDS             complement(3119..4243)
                     /locus_tag="U1396_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HEM5341838.1"
                     /translation="MKLPRFGVEEWLNVHENSAIYDIAGVSISSLTLEELFALSGTNP
                     EDFYEKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYGLIE
                     PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPNTKMICIN
                     NANNPTGAVMDRAYLEELAEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNS
                     LSKTYSLPGIRVGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERN
                     RHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLV
                     PGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKEN"
     gene            complement(4391..5152)
                     /locus_tag="U1396_000630"
                     /pseudo
     CDS             complement(4391..5152)
                     /locus_tag="U1396_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043863.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
     gene            complement(5164..6675)
                     /locus_tag="U1396_000631"
     CDS             complement(5164..6675)
                     /locus_tag="U1396_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HEM5341839.1"
                     /translation="MNLFETFIERKDEWGIALFEHLRISLLALIIAIAIAVPLGLILS
                     SKKRLTEWSLQITGIFQTIPSLALLGLFIPFMGIGTLPAVVALVIYAIFPILQGTLTG
                     LGEIDPSLEEAATAFGMNKWEKLKKFKLALAMPILMSGIRTASIMIIGTATLAALVGA
                     GGLGSFILLGIDRNDSALILIGAVSSAVLAVLFGYGIRLLQDKKPKTILLALLVTLFT
                     VGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDRTDIKVEIKPNFGKTSFLY
                     EALKSGSIDIYPEYTGTITSTLLKNSSMDLSTNSDEVYTYAKEAILEQDGLVYLAPMA
                     FQNTYALAVTEDYAQDHGIEKISDLAKVQQTAVAGFSLEFNDREDGNIGLKNLYNLQL
                     NVKTMEPALRYEAIKSGNVQIIEAYSTDSKVVIYKLKILEDDKQLFPPYQAAPLLSKE
                     TLEKYPELEQVLGVLAGKISTEEMTQMNYAVDVEGKSAEQVAREYLEQEGLLK"
     gene            complement(6675..7406)
                     /locus_tag="U1396_000632"
     CDS             complement(6675..7406)
                     /locus_tag="U1396_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341840.1"
                     /translation="MIDYQNVSLTCKVSGPILKNLTFDIQEGEFFVLIGPSGSGKTTT
                     LKLINRLIEQTEGEVFFQGKRLKDFDLRELRLETGYVLQQIALFPNMTVAENISLIPE
                     MKGLGKEETLTRTRELLTKVGLEPDSYLDRLPKDLSGGEKQRIGILRAIIANPKVLLM
                     DEPFSALDPISKAQLQDLIKELHEEFKMTTVFVTHDMDEAVKLADRICLMQDGQVVQL
                     GSPDELRNHPANDFVKEFIRARGGM"
     gene            complement(7399..7848)
                     /locus_tag="U1396_000633"
     CDS             complement(7399..7848)
                     /locus_tag="U1396_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5341841.1"
                     /translation="MMEVEKRSKDYARMFDQQVGLYEGYARRHGLNAKCLSILMWIYY
                     NPGGVTQNWVSKKTYSSKQVVNATVKKFLDGGLVVLEENPADKRHKKIKLTEEGQQFA
                     SRILDPLEEAENKALSQLSQEEQELMLGLIQRYSQSLMAILKGEDDD"
     gene            complement(8159..8695)
                     /locus_tag="U1396_000634"
     CDS             complement(8159..8695)
                     /locus_tag="U1396_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM5341842.1"
                     /translation="MVKKSSSVWTSLLLGAAGGAAAAAFLASKTGKTVKEKVVNFAND
                     YKENHEEINADFVTKAQDLGKQATERFTEVKTQLETGELTVEDLVKSGKEKSLETFEQ
                     IKEKIAEQNLSTADILEAIKAKTAKAPTVDLTEEDIEDAVVVSEDIELTIDDVIIEPV
                     SETVSEVASETASETVEG"
     gene            complement(8679..9092)
                     /locus_tag="U1396_000635"
     CDS             complement(8679..9092)
                     /locus_tag="U1396_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEM5341843.1"
                     /translation="MIIEISVLIIALSIAAVAVYIVLLLKKLGTVTDEAQQTLKVLTS
                     DVNVTLYQTNELLAKTNVLVEDVNGKVSTLDPLFVAVADLSTSVSDLNASARDLTVKA
                     KSAGASTVKAGGALSALSTLSSLLGKKGEKNGKKI"
     gene            complement(9103..9906)
                     /locus_tag="U1396_000636"
     CDS             complement(9103..9906)
                     /locus_tag="U1396_000636"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM5341844.1"
                     /translation="MNTIEKRLNMDPIAIKLGPLEIRWYAICILLGLILGVYLATKEG
                     PRKKIRQDDILDFILIAFPLSILGARIYYVAFSWSEYKDNILSIFAIWNGGIAIYGGL
                     ITGAIVLYFFTQYRFINTLDFLDIVAPSVMIAQAIGRWGNFFNQEAYGKAVESLNYLP
                     AFIRDQMYIDGAYRQPTFLFESLWNLLGFGLVCVLRRRPKFFKQGEIAAFYLVWYGCG
                     RLLIEGLRTDSLMFLGIRVSQWLSGVLILVGIIMVVLRRRKSSIPFYQP"
     gene            complement(9881..10813)
                     /locus_tag="U1396_000637"
     CDS             complement(9881..10813)
                     /locus_tag="U1396_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEM5341845.1"
                     /translation="MTVYVKDLVDNLRIECAYSTEELLQKQITTADITRPGLEMTGYF
                     DYYAPERIQLIGMKEWSYLMAMTAHNRYQVLSQMFQPETPVVIVARGLEIPEEMYKAA
                     KEKQIAICRSKTATSRLSGELSSYLDSRLAQRTSVHGVLMDIYGMGVLIQGDSGIGKS
                     ETGLELVKRGHRLVADDRVDVYAKDDVTLWGEPAEILRHLLEIRGVGIIDIMSLYGAS
                     AVKDSSEVQLAVYLENFETGKVFDRLGNSGDTIEIAGIAIPQIRIPVKTGRNISVVIE
                     AAAMNYRAKQMGFDATKIFEERLSNLIEHNREEA"
     gene            11027..11971
                     /gene="manA"
                     /locus_tag="U1396_000638"
     CDS             11027..11971
                     /gene="manA"
                     /locus_tag="U1396_000638"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEM5341846.1"
                     /translation="MMEPLFLTPVMHEKIWGGNRLRTNYHYDIPSEKTGECWAISAHP
                     NGVTTVSNGQYKGRGLDDLYKNEKHLFGNSTDDVFPLLTKILDADDWLSVQVHPDDSY
                     GLAHEGELGKTECWYILEAEDGAEIIYGHNAQSKEELRQQIEAGDWDKLLTHVPVKKG
                     DFFFVPSGTMHAIGKGILILETQQSSDTTYRVYDFDRRDDAGNLRELHIEKSIDVLTI
                     GPVANSTPAHLKAGNLDSTLLVANPFFTVYKWNIQQEIKMEQTVPYLLVSVIEGEGTI
                     QVGETSYPLQKGSHFILPANVTDWTFTGQMDIIAIHAN"
     gene            complement(12018..13409)
                     /locus_tag="U1396_000639"
     CDS             complement(12018..13409)
                     /locus_tag="U1396_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5341847.1"
                     /translation="MKKFPTNFWWGAATSGPQSEGRFYKKHKNVFDYWYDIEPEAFYE
                     GVGPDVTSNFYNSFREDIAMMREVGLNSVRTSIQWTRLIDDLETNTVNQAAVEFYNQV
                     FDCFIENGIRPIVTLHHFDLPAELYHKYGGWESRRVVDLFVGFAEQAFKLFGDRVKDW
                     TTHNEPIVVVLGQYLQQFHYPKLVDGKKAVQVAYHLNLASALAIAKYRELGLDEEGGR
                     IGIVLNLTPTYPASQAPADLEAARIAELWNNKLFLDPAIHGHFPEELVDILSRDKVIW
                     KTEPGDDQILRDNTIDFLGVNFYHPNRVQAPAISPSSVGDWKPERYFDSYALPGRRMN
                     LDRGWEIYPEALYDIAITIRDHYNNIPWFVSENGMGISHEERFLDENGQVQDDYRIDF
                     IRDHLECLHHGIEEGSNCFGYHMWTPIDCWSWSNAYRNRYGLIATDIHTQVKTIKKSG
                     EWFRMIVSQNGLS"
     gene            complement(13423..14295)
                     /locus_tag="U1396_000640"
     CDS             complement(13423..14295)
                     /locus_tag="U1396_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM5341848.1"
                     /translation="MTLLVCDLGGTTVKFGLYDKGRLFSKSSFRTPTTWEEMKSTILN
                     LKDHFSYRGLKGVALSCPGAVDTKKGIIYGRSAIPYIHRFPIQDELSALLELPVTIEN
                     DANCAALAELNLGVAQNTTSSIFFIIGTGVGGAIVQGRQLLRGEGQFGGEFGCMILKD
                     GLSMSKLVSPVRRARLFAQQYGYPDSFSGKELFTLAEFGDKRALEVITEIYDYLAIGI
                     YNVLVATNPELVVIGGGISARADLIEQIQQRLDALLVKTKMKDLIYRIEACEFRNDAN
                     LLGAASHFVERYGM"
     gene            complement(14400..15146)
                     /locus_tag="U1396_000641"
     CDS             complement(14400..15146)
                     /locus_tag="U1396_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003030780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5341849.1"
                     /translation="MEKKRVFLQVSMDDDFNEMNHREPAEEFCFYRAVAKGDLNAVRM
                     NCEQQRFLEMNGVGVLSKNPVTNIKYHFVITTAMITRFCGQNGLELEQAYRMSDFYIQ
                     KLDTIHTVQEVQSLHDEMVLHYTEKMRRYHQNDTNSKHVNACKEHIYKNLTERITVDA
                     IADELGVSSSYLSRLFKKEVGVSISTYIRDLKIESAKELLKYGEMSMIEIANHLSFSS
                     QSHFIQQFRDATGVTPKKYRDENAKLKWDR"
     gene            complement(15240..15824)
                     /locus_tag="U1396_000642"
     CDS             complement(15240..15824)
                     /locus_tag="U1396_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEM5341850.1"
                     /translation="MELADWANGEMFGCRWSPENVSFSVEGLRLTIAQDEKGELTGGE
                     WRTRESFGFGKYEVSMKPIKNTGVVSSFFTYTGPSDGTQWDEIDIEFLGYDTTKVQFN
                     YFINGVGNHEYLYDLGFDASEAFHTYGFEWRNDFITWFVDGEPVHTVTEDIPSTPSKI
                     MMNVWPGTGVDEWLGPYDRAIPLVAEYQQISYSP"
     gene            complement(15923..17023)
                     /locus_tag="U1396_000643"
     CDS             complement(15923..17023)
                     /locus_tag="U1396_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEM5341851.1"
                     /translation="MISEVVEETAEPSSEVETPKQEAFSTDFDTFDESTAQLADWSNG
                     SMFNARWTPSNVAFSDGIMTLTIDSDGKGGYNSGEWRTQQYYRYGKYEVRMKPISNPG
                     TVSSFFTYTGPSDGTQWDEIDIEFVGYDTTKVQFNYFTNGVGGHEHYYNLGFDASEEF
                     HTYAFDWKEDSITWFVDGVAVHTATTDIPTTPGKIMMNAWPGIGVDEWLKPFDGNVPL
                     VASYDWMKYTPNTVELPESKIENDEQMTNTTPEETSENKSDSNEGSSLSHEISDSNSS
                     STLHNDSNHQDENSVPSGQYQSNVTLEGKQEVKKTQPLPLLNNNVNQTNLSNQHKLPN
                     TSSQTGWLSMFVGSVLFIVATLVCSFTSRKRS"
     gene            complement(17295..18140)
                     /locus_tag="U1396_000644"
     CDS             complement(17295..18140)
                     /locus_tag="U1396_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003030789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5341852.1"
                     /translation="MSTNAQNLLRRIVAHFVLIILSFMCLFFFYILIVSATHSHSELQ
                     RGFSAFPGGYLWDNLMKVANDGTFPMFRGIINSLIVSGTTAAVCTYFSALTAYGLYVY
                     DFRFKKIAFTFIMAILVMPTQVTSMGFLRLITQMGMYDSFLPLIIPAIASPAVFYFMY
                     SYMKASLPLSMVDAARIDGSSEFRTFNTIVLPLMKPAIAVQAIFTFVGSWNNYFIPAL
                     VLQSKDKMTVPILIASLRGADYMNFDMGKIYTMILVAIVPIVLVYLFLSKFIIAGVTL
                     GGVKE"
     gene            complement(18152..19090)
                     /locus_tag="U1396_000645"
     CDS             complement(18152..19090)
                     /locus_tag="U1396_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5341853.1"
                     /translation="MKQKRKRINYGKWGYLFILPFFVTFFIFSFIPLVETVRYSFYEY
                     YRSGIREIGPTFIGLDNYISLLQSDILKYAGNTMLMWLMGFIPQIGIALLLANWFVDA
                     RLKLRGQGIYKVIIYLPNLIMASAFAMLFFTLFSTNGPINSIMTSLGIFKEPVDFMGT
                     SLGTRTLVAVMNFLMWFGNSTIMLMAAIMGINPDIFEAAEIDGCNSRQRFFYITLPMI
                     RPILAYTLITSIIGGLQMFDVPQILTNGQGAPDRTSTTLIMFLNNHLKSKNYGMAGAL
                     SVYLFVVSAFLCWFVYKMTNNELKLGRTKMKQKVKV"
     gene            complement(19141..20514)
                     /locus_tag="U1396_000646"
     CDS             complement(19141..20514)
                     /locus_tag="U1396_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5341854.1"
                     /translation="MNKKVSALLLTALASTALVACGSKSESAGTSQSEEGKVINIYSW
                     NDEFRQRVEAVYPEVKETSADGTITTLKDGTEIHWIVNPNQDGVYQQKLDEALLNQES
                     ATADEKVDIFLSETDYVNKYSSKEAGAALPLKELGIDPEKDLSDQYSFTKVTASDEDG
                     VQRGSTWQTTPGVIVYRRDIAKAVFGTDDPSEIGKKVEDWATAKETAKILKDKGYTIF
                     ASPADTFRLYGNSIKEPWVKAGETTINVAPEVMQWVKDSKEWLDAGYFTKTVKGQWTD
                     EWNKEMSSQAKNFAFLFPAWGIDFVLKPNWDGAEGSWAVTTPPQEYNWGGSYIHGAVG
                     TDNPKHVKDIILALTGNKENLLKISKDYLDFTNTQSGMQEAAKDENFKSDFLGGQNAF
                     EYFAPVADNIKIAPLSAYDQGSVELIQNNFNDYLQDKVSFEKAKENFEIAIKERYPEI
                     TEIKWPD"
BASE COUNT         6148 a         4728 c         3599 g         6100 t
ORIGIN      
        1 actgcaacct ccttttcttt ttctacctcc attctatccc atccgccacc cctctaccat
       61 agccttagct ttcatttacg tgacagtttt gtaagattaa tcaaaaatca actccacttc
      121 tttgataccg attcgcacct ctgttccccg acccactttt gattttagct ttagggaata
      181 gcccagctcc gcagcaattt tccgtgagag gtagagcccc agacccgaag attgctgggt
      241 tctgcggcca ttgaaacctg agaaaccacg ctcaaagacc cgttccaagt cactctcagc
      301 aatcccaatt cccgtatcgc gaatgaccaa ctcatcccca tctagaaaaa tcgaaacgct
      361 tcccccctga caatacttga gggcattgga taaaatttgt tctatcaaga ggcccagcca
      421 gcgtttgtcg gtctttactg tcctatccaa ctgccccaag tctaagctgg tattgacctg
      481 aatgaaaaag agggaatact ttcttactag atttctgacc agttcatcca aattaactga
      541 ttcgataacc aaatcatcat gaaaggactg taagcggaga tagttcaaga ccagacctgt
      601 gtattgttcg attttaaaga gttctgtttc tagctgatga cggactggac tactatctac
      661 ttccttgacc aagagctgac tggctgcaat cggcgttttc atctggtggg cccagagggt
      721 atagtagtcg tctaattctg tctgttcctg tcgctgtttt tctaggattt tcttgttctg
      781 aacttctagc cattgcactt tttcctgcaa caaacgctca ctggctgtcc cagtagccac
      841 tttctgacca cgccagattt ttccaaaacg agaaaattcc ctgacaaaat cccagaggag
      901 ggcgaggagc caacaaatac tgaggaggag gatggcatag aaaaccaagt ttcttttgat
      961 gtcaaagagg ctactataag ccagaatagc cacagcaaaa acggcgtagg ctatcagaaa
     1021 aatcaagcga tgaccaagcc atgaggtcaa aaatcctggt actaatgagc caaaatcatc
     1081 cttattcatg tgtccacacc aggccgtagc ctactccttt cttggtcgca atcacatctg
     1141 gcagacccag ttctgccaat ttcttacgca ggcgagcaat gttaaccgac aaagtattgt
     1201 catccacaaa aatatcactg ttccagagtt ctctcatcag ctcctcacgg ctgaccactt
     1261 ccttgccatg ttcaaataaa acgcgtaaaa tctgaaattc atttcgcgtc agctcttcca
     1321 caacctgtcc ataggacacc tgcatggtct ttaggtctag ggaaatctcc tcaaaccaga
     1381 gtaaactttg ttctccgaca aagtcatagg ttcttctgag aagcccctgt attttggcta
     1441 ggagaaccgt catttcaaag ggcttggtca catagtcatc cgcccccata ttgatcgcca
     1501 taacaatatc cattggctgg tcatgggaag acagaaacat aatgggcaca cgggatgtct
     1561 tgcgaatttc ctgacaccag taatagccat tgaaaaacgg cagaccaata tccagtaaaa
     1621 tcaaatgggg ctgaaactct tccatctgtt ccaaaaccat ctgaaaatcc ttgacctctt
     1681 gcacctggta accccagttt atcaagtttt tagcaactag ttggctaatc gttttatcat
     1741 cctcgataag aagaattttc tgcataacta tctcctttca tatcactact atttattata
     1801 gcttacattg gaacaaattt gagtattttt atatatttac acaagaagta gactataaaa
     1861 ccaggtcatc agtggtgcag atttgtcaga ccaatcatat ttcgttatac tagataaaaa
     1921 aggaaaggac tgctatgccg aatttattaa cctatattga agaaactcaa tacgataatt
     1981 tttatgataa acctatcaat aagctagata ttctggctct gaccgaactt tcctacctcc
     2041 cttttgataa tctggtcccc tactctttta cagaaaatgg cgtacgactt gatcggttgg
     2101 cagcggcctt tgaagagacc tacaaaaata atttccctcc cttttctatg gtgaccaaaa
     2161 accgcctagc cttacttgga cttctagcca aatccaaacg cttcaaatct atcaaggcat
     2221 ttggcttcgt tgacgattat cagttggaac aggaacaaca attctccgct atcagctatc
     2281 gcctggatag acagaccatc ttgacagctt ttcgtgggac tgacgacacc attatcggtt
     2341 ggaaggaaga tttccacatg acctatatgg atgaaattcc tgcccaacgt gcagcgagtg
     2401 gctacttaga aaaacttatg atgcagcagg gggggcaatt ttatctggcc ggtcattcga
     2461 aaggtggaaa tttagccctc tatgcagcat gccagcaagc tacagaccaa caggatagaa
     2521 tcctagctat ctatcccttt gattcacctg gcttacacaa aaaacacttg gaagcaccta
     2581 gttaccaagc tattcaccaa cggattttcc ctgtcattcc ccagaattca atcgtcggta
     2641 tgatgttaga aacaccagaa aacgctcaga ttgtccagag taataccctc ggcattctac
     2701 aacatatcag tttttcttgg gaggttgacg gaagcgactt caaactagcc cctgccctga
     2761 ccagcgatag cctacaaaca gaccaagcct taaaaacttg gacggctagt ctaacagacg
     2821 atgaattacg agacttcttc gatttgtttt tcggcatctt catcaaagca ggaattgaac
     2881 gttttagcga catcacggta aatcccctac agaaattaca agaaattgac cgactgagaa
     2941 aagaaatagc tccagaagaa gccgaaatgg tggacaaact cattcggctc ctctttgata
     3001 cccgttatca aatctggagg gacaatattc caagccctga aatctctcta ccagattggt
     3061 ggaaactttt ccaaagaaat acaactgaaa ataaaggaaa ctagctcaac cacctgagct
     3121 agttttcttt atcaaatctt cttaaaaatt gggataattt ttctaatcct ttgattagag
     3181 tttcttgttc acaggcaaaa cctagacgga catagccgtc acgttcaaac cgattaccag
     3241 gaactaggag aacaccatgt tcttgcaaga gttgcaagca aaaatcttcc ataggcatat
     3301 ccactgcaat cttgacaaag ctagtggaaa caaccgctgg acggatatag gaaacgaggg
     3361 gttcttcctc aatccattgg tccaaaattg ctaaattttc ttctaaaatg tgccgatttc
     3421 gttctagaat ttcttgataa tgggccaaag ctaattgagc caccagatcg tcaaagacac
     3481 ctgcacaaat catggtgtaa tcccgataat ctctcagaat gtccgtcact tgatgattgg
     3541 cagccaccca gccgacacga atacctggca gagaataagt cttggataag ctatttacag
     3601 caattccttt atcatagact tctataatag atggcacatc cagctcagaa aaggaacgat
     3661 agacttcatc tgataggatg taagcaccaa cttcactagc aatttccgcc aattcttcca
     3721 aataagccct atccatgaca gcaccagttg gattattggc attattgatg caaatcatct
     3781 tggtattggg acgaatgagc tgacgcagtt tttccaagtc tggcaaccag ccattttcct
     3841 cctcaatctg ccacaaatcc acttctgctc ccaaagactt tggaatatcg tagagttgtt
     3901 ggtaggtcgg ataaagggaa atgacatggt ctcctggctc aatcaaacca tagagaacca
     3961 acaagtttgc ccctgttgcc ccgttggtct ggagaatttg ttctggcttg acgcctgtat
     4021 agagttgact aactgatttt ttaaatgctg gcgaaccttc tatccagcca tagttgagct
     4081 tggtgccctg caatttctca taaaaatcct caggattggt tcccgacaag gcaaatagtt
     4141 cctccaaagt caatgaagaa atagacaccc ctgctatatc ataaatcgcg ctattttcat
     4201 ggacattcag ccattcctca acgccaaaac gtggtaattt cataagactt cctacttcaa
     4261 tttaatcttt ccctattgta ccatattctt tcaacaattg tataaatatg cgatatatca
     4321 taaaaggaat atttttacaa ttgaaaaagc agactttctc aaacgagact gcctgctctg
     4381 cttttttccc ttaaaacttt cctaaattcg tcaagtcttt cttctctggc atgacttcct
     4441 tgttgtccca gtgctcgaca atctttccgt ctttgaggcg gtagatgtca aagtgggcat
     4501 agtcctgacc tgcaatccag actttcgagt aagccaccac atagtcaccc tatcctatca
     4561 ccttgaagac aaagtcgtag tcaacagcct tatcgacaag atagtcctta taggccgcac
     4621 cgccttgggc aatctcttgg ttgtgctgaa tcaggtccgc tgccacatag tcgtcaaact
     4681 tctcgatttc cccattttga aggacgttga ccaagaaacg acggacgatt ttcttgttgt
     4741 cctcggtctt atctaagtca gtcagctcaa agtctgcgta aatcgggtct gtttggccaa
     4801 tggtttttgg ataggcatca atgacatccc aatgctcgac gatacgacca ttttcatctg
     4861 aacggaaaat gtccgccgtc acccactcag cttcaccgtc attgagtttc tggtggacat
     4921 ggacgaagac aaaatttccg tcttcaatgg cacgcacaat gttaatttcc cgcttgggat
     4981 tgcgtttgaa aaagtcctca aagaaagccg caaagccctc tttctcatca ggtacacccg
     5041 tactgtgctg ggtatagctg actcccatat agttttcatg aacttccttg atttcgccat
     5101 cgcgaatgcc acgaaggtaa agatttttag cattttctag ttgatgtgac atagtatttt
     5161 ctcctatttt aacaatcctt cttgttctaa atattccctc gccacttgct ctgccgactt
     5221 gccttccaca tcgaccgcat agttcatctg ggtcatttcc tcggtcgaga ttttgcctgc
     5281 caagacccct aggacttgct ccaactcggg atatttctct aaggtttctt tggacaatag
     5341 cggagcggcc tggtaaggtg ggaagagctg cttgtcgtct tctaggattt tcaatttgta
     5401 aatgactacc ttgctgtctg tagaatatgc ttcgataatc tgcacattac cactcttaat
     5461 agcttcgtag cgaagggctg gctccatggt cttgacattg agttggagat tgtagagatt
     5521 ttttagaccg atattaccat cttcgcggtc gttaaactct aatgagaatc ctgcgacagc
     5581 tgtctgctgc acttttgcca aatccgaaat cttttcaatg ccatgatctt gagcataatc
     5641 ttccgttaca gccaaagcat aggtattctg gaaagccatt ggtgctaggt aaaccaagcc
     5701 atcctgctcc aaaatcgcct ctttagcata agtgtaaacc tcatcagaat tagtagataa
     5761 atccattgat gaatttttca aaagagtact tgtaatggtc cctgtgtact caggataaat
     5821 atcaatagaa cctgatttga gtgcctcata aaggaagcta gtctttccga aattaggttt
     5881 tatctccacc ttgatgtctg tccggtcctc aatcaacaac ttatacatat tgatgagaat
     5941 ttcaggttct gcaccgagct tccctgcaat gaccaactgt tttgtggaaa agttaagcat
     6001 gggaacataa ctagctccaa cagtaaataa agtcaccaat agagccaata aaattgtctt
     6061 gggtttcttg tcctgcaaca gacgaatgcc ataaccaaaa agcactgcaa ggacagccga
     6121 cgataccgca ccaatcaaaa tcaaggctga atcattgcgg tcaattccaa gtagaataaa
     6181 ggagcccagg cccccagctc ccaccaaggc tgccagagtc gccgttccga taatcataat
     6241 ggaagccgtc cgaatccctg acatcaaaat aggcatggca agagctaact taaatttttt
     6301 caacttctcc catttattca taccaaaagc ggttgctgct tcttccagag aagggtcgat
     6361 ttctccaagt cctgtcaatg tcccctgcaa gataggaaag atagcataaa taacaagtgc
     6421 tactactgct ggcaaggttc cgattcccat aaaaggaatg aaaagaccaa gcaaagcaag
     6481 ggatggaata gtttggaaga tacctgttat ttgcagactc cactcagtca agcgtttttt
     6541 actagataga atcagtccca aaggtactgc aattgcaatc gcaataatca aagctagaag
     6601 ggagatgcga aggtgttcaa aaagagcgat tccccactcg tccttgcgtt ctataaaggt
     6661 ttcaaatagg ttcattacat acctcctcga gctctgataa attccttgac aaaatcattg
     6721 gcaggatgat tcctcaattc atcaggactt cctaattgca caacttgtcc atcttgcatg
     6781 agacagatgc gatccgccaa tttaaccgcc tcatccatat catgggtaac gaaaaccgtt
     6841 gtcatcttga attcctcatg taattcctta atcaagtcct gcaactgagc cttactgatt
     6901 ggatccagag ctgagaaagg ttcgtccatg agtaacactt tcggattggc aatgatggcc
     6961 cgcaaaatcc cgatccgctg tttttctcct ccagacaagt ccttgggcaa acgatccaga
     7021 tagctgtctg gttccaagcc aaccttggtc aagagctctc tcgtcctcgt cagggtttct
     7081 tccttgccca aacctttcat ttcaggaata agagaaatgt tttcagctac cgtcatattt
     7141 ggaaaaaggg ctatctgctg aagaacataa cctgtctcca aacgtaattc acgcaggtcg
     7201 aaatccttaa gtcgcttacc ttgaaaaaaa acctctccct cggtctgctc aattagacgg
     7261 ttaatcaatt tcaacgtagt tgtctttccg ctaccactcg gtccaatcaa gacaaagaac
     7321 tccccttctt gaatatcaaa ggtcaaattt ttcaagattg gtccgctaac cttacaggtc
     7381 agggatacat tttgataatc aatcatcatc ttctcctttt aaaatagcca tgagactctg
     7441 actgtagcgc tgaattaatc ctagcataag ctcctgttcc tcctgactga gttgagacag
     7501 cgccttattt tccgcctcct ctaagggatc caaaatgcga ctagcaaatt gttgcccctc
     7561 ctctgtcaat ttaattttct tatgtcgctt atctgctgga ttctcctcta aaactaccag
     7621 gcctccatcc aaaaatttct ttacagtagc attgacaact tgtttgcttg aataggtctt
     7681 cttactgacc cagttttgcg tcacacctcc gggattataa taaatccaca tgagaatgga
     7741 taaacatttt gcattgagcc catgccggcg agcgtagccc tcatagagcc cgacttgctg
     7801 gtcaaacata cgagcgtaat ccttactcct tttctcaact tccattatcc ttccccctcc
     7861 tcagtgagca caactacctt actaaaagtc tctggtctac tagtgttcaa aacaacaaca
     7921 attttcacaa cgacttcctc ctgtaatcat gttagtcaat attttttact attttaccaa
     7981 aaaaagaaaa atagtcaatc attttgacta ttttgaaacg tcaactacct tattatagat
     8041 tcccgtcttc atccactcaa acatattaaa tccctgaaat tatctgcttt taatttacac
     8101 aaaacaaatg ataatcagat aacaaaacta gcctagaaaa ttctaagcta gtttcatttt
     8161 atccttcaac tgtttctgag gcagtttcgc ttgctacttc tgaaacggtt tctgatacag
     8221 gttcgatgat gacatcatca attgtaagct caatatcttc agacacaact acagcatcct
     8281 caatatcttc ttctgtcaaa tccactgtcg gagctttagc agtttttgcc ttgatagctt
     8341 ccaaaatgtc agccgttgac aagttttgtt ccgcaatttt ttccttgatt tgctcaaagg
     8401 tttccaagga tttttcctta ccagacttga ccaaatcttc tactgtcaat tcaccagttt
     8461 caagttgagt ttttacttca gtaaatcgtt cagtcgcttg tttgcctaaa tcttgtgcct
     8521 tagtgacaaa atcagcattg atttcttcat ggttttcttt atagtcatta gcaaagttta
     8581 caactttttc tttgactgtt ttaccagtct tacttgctag aaaagcagct gcagcagctc
     8641 cgcctgctgc ccctaacaaa aggctagtcc acacgctact agattttttt accatttttt
     8701 tctcctttct tacctaagag agatgagaga gttgacagag ctgaaagagc tccgccagct
     8761 tttacagtac ttgctccagc agacttggct ttgactgtca aatcacgcgc tgaagcattc
     8821 aaatctgata cagaagttga caagtcagct actgctacaa aaagaggatc aagggttgaa
     8881 accttgccat ttacatcttc gactaaaaca ttggttttag ccaaaagctc gttggtctga
     8941 tagagagtca cattgacatc gctggtcaag accttaagcg tttgctgggc ttcatctgtc
     9001 accgtaccca attttttcaa caacaaaaca atatatactg ccaccgccgc gatcgacaag
     9061 gcaataatca agacagaaat ttcaataatc atatcttctc ctttagggtt gatagaatgg
     9121 aatagaagac tttcttctcc gcaacacaac catgataata ccaacgagga ttaacacccc
     9181 agatagccat tgtgaaacac gtattcccag gaacatgagg ctgtccgtcc gcaagccttc
     9241 tatcaaaagg cgaccacaac cataccagac taggtagaaa gctgcaattt ctccctgttt
     9301 aaagaatttt ggccgtctac gtaacacaca aaccaagcca aagcctagca aattccagag
     9361 agactcaaac aagaaggttg gttgacggta ggcaccatca atatacatct ggtctcggat
     9421 aaaggctggc aggtagttca aactttctac tgctttacca taggcctctt ggttaaagaa
     9481 atttccccaa cgaccaattg cttgagcaat catgaccgat ggcgctacaa tatccaaaaa
     9541 atccagggta ttaataaagc gatactgggt aaagaaataa aggacgattg cacctgtaat
     9601 caaaccacca tagatggcaa taccaccgtt ccagatagcg aagatagata aaatgttatc
     9661 cttatattca ctccatgaaa aggcgacgta gtaaatccgt gcccctagga tagaaagcgg
     9721 aaatgcgatt agaataaaat ctaaaatatc atcctgacga attttctttc gcggaccctc
     9781 ttttgtcgcc agataaacac ctagaatcag accaagcaaa atgcagattg cataccaacg
     9841 aatttctaag ggacctaatt taatcgcaat aggatccata ttaagcctct tctctattgt
     9901 gttcaattag attagacaag cgttcttcga agatcttcgt tgcatcaaac cccatctgtt
     9961 tggcacggta gttcatggct gctgcttcaa ttacgacaga aatatttcga ccggttttta
    10021 caggaatacg tatttgtgga atagcaattc ctgctatttc gatagtatcg ccagagtttc
    10081 ccaaacggtc aaatacctta cctgtttcaa aattttcaag ataaacagct aattgcactt
    10141 ctgatgaatc tttcacggca ctagcaccgt atagactcat gatgtcgata atgccgactc
    10201 ctcgaatctc taataagtgg cgcagaattt ccgcaggctc accccagaga gtaacatcgt
    10261 cttttgcata gacatcaaca cggtcatcag ccaccaatcg gtgtcctcgt ttaaccaact
    10321 caagaccagt ctcactctta ccgataccag aatcaccctg gataagcaca cccataccgt
    10381 aaatgtccat caagacaccg tgtacactcg tccgctgagc caggcgacta tccaagtaag
    10441 aagacaattc tcccgataga cgactggttg ctgtcttgct tcggcagata gcaatttgtt
    10501 tttcttttgc agccttgtac atctcctcag ggatttccaa gccacgtgcc actatgacaa
    10561 caggggtttc tggctggaac atctgagaaa gaacctgata gcggttatgg gcagtcatgg
    10621 ccatcaaata agaccactcc ttcatcccta tcaactggat gcgctctgga gcatagtaat
    10681 caaaatagcc agtcatttcc aatcctggtc gggtaatatc tgccgtcgta atttgctttt
    10741 gcaggagctc ttctgtactg taagcacatt caatccgcag attatcgacc aaatctttca
    10801 cataaacggt catttcttcc ctcactttca gttttattat attataccat aagctagggg
    10861 ttgggggaaa aacaaggggc tgatttggta aaaagaatga gttctttctt tttctcacaa
    10921 aattagcaaa acttccacag attaaatgca cttctcttcc ttcgctacat atttttaaca
    10981 aatctgttat actttatata gattaatact tactattaag gagaaaatca tggaaccatt
    11041 gtttctcaca cctgttatgc acgaaaaaat ttggggaggc aatcgcctaa ggaccaacta
    11101 ccactacgac attcctagtg aaaagactgg ggaatgttgg gcaatctctg cccacccaaa
    11161 cggcgtaaca actgtctcaa acggtcaata taaaggaaga ggactggatg acctctataa
    11221 gaatgaaaaa catttatttg gcaattcaac agatgatgtc tttccattat taacaaaaat
    11281 ccttgatgca gacgattggc ttagcgtcca agtccatccc gatgatagct atggcttagc
    11341 tcacgaaggg gaactgggca agacagaatg ttggtacatt ttggaagccg aagacggagc
    11401 tgagatcatt tatggtcaca atgcccaatc caaagaagaa ctccgtcagc aaatcgaagc
    11461 cggagattgg gacaagctgt tgacccatgt acccgtcaaa aaaggtgatt tcttctttgt
    11521 accaagcggc accatgcacg ccatcggtaa gggaatcctg attttagaaa ctcaacaatc
    11581 cagtgataca acctaccgtg tctatgactt tgaccgccgt gacgatgcag gcaacctccg
    11641 tgaactacac attgagaaat cgattgatgt actgaccatc ggacctgttg ctaactccac
    11701 acctgcccac ctcaaagcag gcaatcttga ctcgacactt ctggtcgcca atcccttctt
    11761 taccgtatat aaatggaata tccagcaaga aattaaaatg gaacagacag ttccttacct
    11821 gcttgtcagt gtcattgaag gggaaggtac catccaagtc ggtgaaacca gctacccact
    11881 tcaaaaagga agccacttta ttctaccagc caatgtgaca gactggacat ttacaggaca
    11941 aatggacatc atcgcaatcc acgcgaacta aagataaatg aaaaccgtta gaatactgcc
    12001 ctaacggttt tattttttta tgatagtcca ttctgactga caatcattct aaaccactct
    12061 cctgattttt taatggtctt cacctgtgta tggatatctg ttgcaatcag accataacga
    12121 ttccgataag catttgacca agaccaacaa tcaatcggcg tccacatatg atagccaaaa
    12181 caattacttc cttcttcaat accatggtgt aagcattcta gatgatctcg gataaagtct
    12241 atccgatagt catcttgtac ttgaccattc tcatctaaaa aacgttcttc atgagaaatc
    12301 cccataccat tctctgagac aaaccatgga atattattat aatggtcacg aatagtgatt
    12361 gcaatatcat acagtgcttc tggataaatt tcccaaccac gatccaaatt cattctacgc
    12421 ccaggtaatg cgtaactatc aaagtatcgt tcaggcttcc agtcgcctac tgaacttgga
    12481 gaaatagctg gagcttgaac ccgatttggg tgatagaaat ttacccccaa aaaatcgata
    12541 gtattatctc ttaatatttg gtcatcacct ggttccgtct tccaaatgac tttatctctt
    12601 gataatatgt caactaattc ctctggaaaa tgcccatgga tagcaggatc aaggaataat
    12661 ttattattcc acaattcagc aatccgtgct gcttccaaat ctgctggtgc ttgtgaggct
    12721 ggataagtcg gagtcaagtt tagaacaatt ccaatacgac ctccttcttc atcaagacct
    12781 aattcacgat attttgcaat tgctagtgcc gaagcaagat tcaaatggta agcgacttgt
    12841 acagcttttt ttccatcaac gagttttgga tagtgaaact gttgcagata ttgacctaac
    12901 acaacaacaa ttggctcatt atgagttgtc caatccttta ctcgatcacc aaagagtttg
    12961 aatgcttgtt cagcaaaacc aacaaacagg tcaacaacac gtcgagattc ccaacctcca
    13021 tatttatgat acaattctgc tggtagatca aagtgatgca atgttacaat tggtctaatc
    13081 ccattttcaa taaaacagtc aaacacctga ttataaaact caacagcagc ctgattgaca
    13141 gtattggttt ccaaatcatc aatcagacga gtccactgaa tagacgttcg aacactatta
    13201 agtccaactt ctctcatcat tgcaatatct tcacggaaac tgttgtagaa attcgaggtt
    13261 acatctggac caacaccttc gtaaaaagct tctggctcaa tatcatacca ataatcaaaa
    13321 acattcttgt gtttcttata aaaacgtccc tcactttgcg gacctgaagt tgcagccccc
    13381 caccaaaaat tagttggaaa ttttttcatt atttactcct ttttacatac catatctttc
    13441 gacaaaatgc gatgctgctc caagcaaatt ggcatcattt ctaaattcac aagcctcaat
    13501 acgatagatt aaatccttca tcttcgtttt cactagtaag gcatccaatc gttgctggat
    13561 ttgttcaatc aggtctgctc tagctgaaat tccacctcca atcactacta attctggatt
    13621 agtagccacc aacacattat agatgcctat tgccaggtaa tcatatattt ctgttattac
    13681 ctctagagcc ctcttgtcac caaattcagc aagagtaaat aactcttttc ctgaaaagga
    13741 atctgggtaa ccatactgtt gagcaaataa tcttgctcga cgaactggac tcactaactt
    13801 gctcatactt aacccatctt ttaaaatcat acaaccaaat tctccaccga attggccttc
    13861 acctcttaga agctgccgtc cttgtactat agcacctcca acacccgtac caatgataaa
    13921 aaagatagat gaggttgtat tttgtgctac ccccagattt aattcagcta aggcagcaca
    13981 gtttgcatca ttttcaattg tcacaggtag ttccaataat gcactcaact catcttgaat
    14041 cggaaaacga tgaatatagg gaatggcgct tctgccgtaa ataatcccct ttttagtatc
    14101 aactgctccc ggacaagata atgcaactcc tttcagtcct ctataagaaa aatggtcctt
    14161 tagatttagt atggttgact tcatttcttc ccaagtggtt ggtgtccgaa atgaagattt
    14221 actaaagagt cttcctttat cataaagacc aaatttgact gttgttcctc ccaaatcaca
    14281 tactaataat gtcatattct tcttctttct atttctcatt gaagaatatc cacaaaatcc
    14341 attcaataca tgatagaaaa aagcctgaga tactttcaag cttttatcct attgacaacc
    14401 tacctatccc acttcaactt tgcattttca tctctatact tcttaggtgt cactccagtt
    14461 gcatctctaa attgttggat aaaatgactt tgtgaggaaa aagaaaggtg gtttgcaatt
    14521 tcaatcatgg acatttctcc atatttcagc aattcctttg cagattcaat ttttaaatct
    14581 cgaatataag tactaattga gacacctacc tcttttttaa aaagacgaga taagtaactc
    14641 gatgatactc ctagttcatc tgcaatggca tcaactgtaa tccgttctgt tagattttta
    14701 taaatatgct ccttacatgc attgacatgt tttgaattgg tatcattttg atggtatcgc
    14761 cgcatctttt ctgtatagtg caacaccatt tcatcatgca aactttgcac ttcttgtacg
    14821 gtgtgaattg tatctaattt ctgaatataa aagtcactca tgcgatacgc ttgctctaac
    14881 tccaatccat tttgtccaca aaatcgagta atcatcgctg tcgttatgac aaagtgatac
    14941 ttgatattgg tcacaggatt ctttgataaa acaccgactc cattcatctc taaaaagcgt
    15001 tgttgctcac aattcattcg aaccgcgttt aaatctccct ttgctacagc acggtaaaaa
    15061 cagaattctt ccgccggttc tcgatgattc atttcattga aatcgtcatc catcgaaact
    15121 tgtaaaaata ccctcttctt ttccatactc attctccact cgattattta aggaatgctt
    15181 tacgctttca ttatatcatt ttttgctttg gaagaacaag ttgaaattta catgaatatt
    15241 tacggtgaat aggaaatttg ctgatattca gctacaagag gtattgccct atcataagga
    15301 cctaaccatt catctacacc cgttccaggc catacattca tcataatttt gcttggtgta
    15361 cttggaatat cttcagttac tgtatgaaca ggctctccat ctacaaacca ggtaataaaa
    15421 tcattacgcc attcaaatcc ataggtgtga aacgcctcac tagcatcaaa accaagatca
    15481 tatagatatt catgatttcc tacaccattt atgaagtaat taaattgaac ctttgttgta
    15541 tcatacccta aaaattcaat atcaatttca tcccattgtg ttccatcgct tggaccagtg
    15601 taagtaaaaa atgaagaaac gacaccagta tttttgatag gcttcattga aacttcatat
    15661 ttaccaaatc cgaaagattc acgagtacgc cattctccac ctgtaagctc tcctttctcg
    15721 tcttgagcaa tggtgagacg tagaccttca acactaaatg agacattttc gggagaccaa
    15781 cgacagccaa acatttcacc atttgcccaa tctgctaact ccatcgtatc tgaatcatat
    15841 tcttgaaacg tctccatgta agacacttta ttattttcat gtgtgttttc tatcgaatgt
    15901 gtcatctttc accttctctt ttctatgagc gttttcgact agtgaatgag catactaacg
    15961 tagctacaat aaataataca ctccctacaa acatagataa ccatcccgtt tggcttgagg
    16021 tatttggaag tttatgttgg ttgcttagat tagtctgatt aacattgtta ttcagtaatg
    16081 ggagaggttg agtttttttc acctcctgct tgccttccaa cgttacattg gattggtact
    16141 gacctgaagg aacactattc tcatcttggt ggtttgaatc attatgtaaa gttgatgaac
    16201 tgtttgaatc ggatatttca tgggaaagtg aagaaccttc atttgaatcc gacttgtttt
    16261 ctgaagtctc ttcaggtgtc gtatttgtca tctgttcatc attctctatt ttagattccg
    16321 gtaattcaac tgtattcggt gtatacttca tccaatcata agaagcaacc aaaggcacgt
    16381 ttccatcaaa tggttttagc cattcatcca caccaatacc aggccaggca ttcatcataa
    16441 tttttccagg tgtagttgga atatctgtgg ttgctgtatg aactgccaca ccatctacaa
    16501 accatgtaat agaatcctct ttccaatcaa acgcataggt atgaaattct tcagaggcgt
    16561 caaatcctaa attgtaataa tgttcatgac cacctacacc attggtaaaa tagttgaact
    16621 gaacttttgt tgtatcatat ccaacaaact caatatcaat ttcatcccat tgtgtgccat
    16681 cacttggacc cgtataagta aagaaggaag aaactgtccc aggattactg attggtttca
    16741 tgcgtacttc atattttcca taacggtaat attgttgggt acgccattca ccactattgt
    16801 aaccaccttt tccatcacta tctatcgtaa gtgtcataat accatctgaa aatgccacat
    16861 ttgaaggtgt ccatcgtgca ttgaacattg aaccattaga ccaatctgcc aactgagccg
    16921 tactctcatc gaaagtatca aaatcagtcg aaaatgcttc ttgcttagga gtttcaactt
    16981 ctgatgatgg ctccgcggtc tcctctacta cttctgaaat catttcattc tcttggctag
    17041 ctgttgtagc aggcaatgtt tcatccaatt gacttgttac agctacttct gtttcggttg
    17101 ttgcagtttc cgtactcaat gaagcagttt cagaagattc cgatataatt tgttctgaag
    17161 ttggtaatag ttgactagcc acatcttcag ctaaaatctg ttttccatta actgctacgc
    17221 tacagatagt tgatgcaaca cacaaccaag atagaactat tttctttgac ataaactgtc
    17281 tccttaaaat tgttttattc tttgacaccg ccaagagtca ctccagcaat gataaatttg
    17341 gaaaggaaga ggtaaaccag cacaatcggt acgatggcaa ctaaaatcat agtataaatt
    17401 tttcccatat caaaattcat atagtctgca ccacgaaggg acgcaattaa tatcggaacg
    17461 gtcattttat ccttagattg aagaacaagg gctgggatga agtaattatt ccatgaacct
    17521 acaaatgtaa agattgcttg aactgcgata gctggtttca tcagaggaag aacaatcgta
    17581 ttaaaagtac gaaattcact tgaaccatca attcgcgctg catcaaccat tgacagtggt
    17641 aaagaggcct tcatatagct atacataaag tagaagaccg ctggcgaggc aatagcagga
    17701 ataattaatg gaagaaaact atcatacata cccatttggg taatcaatct caggaaaccc
    17761 attgaagtta cttgagtcgg cataactaga atagccatga taaaagtaaa ggctattttt
    17821 ttaaatctaa agtcatacac ataaagccca taggctgtta aggctgagaa ataagtacaa
    17881 accgctgcag tagtaccaga aacaatcaaa ctattgataa tccctctaaa cattgggaaa
    17941 gtcccatcat tagcaacttt catcagatta tcccaaagat atcccccagg gaaggcagaa
    18001 aatcctcttt gcaactctga atgagaatgt gtagcactaa caatcagaat ataaaagaag
    18061 aaaaggcaca taaatgatag tataatcaat acaaaatgtg ccacaatacg ccgcaagaga
    18121 ttctgagcat ttgttgacat attctaacct cctatacttt tactttttgt ttcatctttg
    18181 tacgcccaag ctttaattca ttatttgtca tcttatagac aaaccaacac aagaacgcac
    18241 taactacgaa cagataaaca gatagtgcac cagccatgcc atagttctta ctcttcaagt
    18301 gattatttaa aaacataatg agagttgtag aagttcggtc aggagctcct tgtccattag
    18361 tcagaatttg tggaacatca aacatttgaa gtcctccaat aatggatgta atcaacgtat
    18421 atgctagaat cggacgaatc attggtaacg taatgtaaaa gaaacgttgt cggctattac
    18481 aaccatcaat ctctgctgct tcaaaaatat ctggattaat ccccatgatt gctgccatta
    18541 gcatgattgt tgaattaccg aaccacatca gaaaattcat caccgcaact aaagtacggg
    18601 tgccaagaga ggtacccata aaatcaactg gttccttaaa tatacctaat gaagtcatta
    18661 tcgaattaat aggaccgttt gttgaaaaaa gggtaaagaa aagcatggca aatgcagaag
    18721 ccataattaa atttggcaag tatataatta ccttataaat tccttgtccc cgtaatttaa
    18781 gtcttgcatc aacaaaccag tttgctaaaa gcagagcaat tccaatctga ggaataaagc
    18841 ccataagcca cattaacatg gtattgccag catattttag aatatcggac tgtaataaac
    18901 taatataatt atcaagacca ataaaggtcg gcccaatttc tctaattcct gatcgatagt
    18961 attcataaaa actatatcgc acagtttcaa ctaatggaat gaaggaaaaa ataaagaagg
    19021 tgacaaaaaa cggtaagata aacagataac cccatttccc gtaatttata cgtttacgtt
    19081 tttgtttcat tctgttactc cttttagagt aaggcggtgc aacatgcacc gctactctct
    19141 ttaatcaggc catttaatct ctgtgatttc tggataacgt tccttaatgg caatttcaaa
    19201 gttttctttt gctttttcaa agctaacctt atcttgtaga taatcattaa agttattttg
    19261 aatcaattcc acgctacctt ggtcgtaggc agataacgga gcaatcttaa tattgtcagc
    19321 aactggagca aaatattcaa aggcattttg tccaccaagg aagtcagatt tgaaattttc
    19381 atctttcgct gcttcttgca taccagattg agtatttgta aagtcaagat aatcttttga
    19441 aattttcaag agattttctt tatttcctgt caaagctaaa ataatatctt ttacatgttt
    19501 aggattgtct gtaccaactg ctccatggat ataagaacca ccccagttgt attcttgtgg
    19561 tggtgtcgtc actgcccaag aaccttcagc accatcccag ttcggtttca agacaaaatc
    19621 aataccccat gctgggaata ggaacgcaaa gttctttgct tgggagctca tttccttgtt
    19681 ccattcatcg gtccactgac ctttaactgt cttggtaaag tagccggcat ctaaccattc
    19741 tttagagtct ttaacccatt gcataacctc tggtgcaaca ttaatagtgg tttctccagc
    19801 ttttacccag ggttctttga tactatttcc atatagacgg aaagtatcgg ctggagaagc
    19861 aaaaattgta tagcctttat ctttcaatat ttttgctgtc tctttagcag ttgcccaatc
    19921 ctctaccttc ttaccaattt cagaaggatc atctgtacca aaaacagctt ttgctatatc
    19981 acggcggtac acgattaccc ctggggtggt ttgccatgtc gaaccacgtt gaaccccgtc
    20041 ttcatcagat gctgttactt tagtaaaact atattggtca gataagtctt tttctggatc
    20101 aattccaagt tccttcaaag gaagagctgc accagcctct tttgatgagt atttattaac
    20161 atagtcggtc tcagagagaa aaatatcaac tttttcatct gcagtagctg attcttgatt
    20221 tagtaatgct tcgtccaatt tttgttggta aacaccatct tggttcggat tgacaatcca
    20281 atgaatctct gtcccatcct ttaaggttgt aatggttccg tctgcagagg tttccttcac
    20341 ttcaggatat actgcctcta cacgttgacg aaattcgtca ttccaagaat agatatttat
    20401 tactttacct tcttctgatt ggcttgtacc agctgattcg gacttggagc cacaggcaac
    20461 aagtgcagtt gatgctaacg cagtcaataa taaagcgctt acttttttgt tcatgtctct
    20521 tctcctttta gaagttttct ttgtttttat gaattcatta tagctagaaa gagtg
//
LOCUS       DASGBY010000023        20215 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.023, whole genome shotgun sequence.
ACCESSION   DASGBY010000023 DASGBY010000000
VERSION     DASGBY010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20215
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.023"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            1..396
                     /gene="spx"
                     /locus_tag="U1396_000647"
     CDS             1..396
                     /gene="spx"
                     /locus_tag="U1396_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003026638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HEM5341855.1"
                     /translation="MKIYTVSSCTSCKKAKNWLNAHQLSYNEHNLAKEAITKEEILNI
                     LTKTENGIASIVSSKNRYAKSLDFDIEELSVNEVIDLITSNPRILKSPILIDEKRLQV
                     GYKEDDIRAFLPRAVRNVENAQARMRAAL"
     gene            496..762
                     /locus_tag="U1396_000648"
     CDS             496..762
                     /locus_tag="U1396_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HEM5341856.1"
                     /translation="MGFTEETVRFRLDDTDKQEISKTLTSVYRSLEEKGYNPINQIIG
                     YVLSGDPAYIPRYNDARNQIRKHERDEIIEELVRYYLKGNGIDL"
     gene            762..1181
                     /gene="ruvX"
                     /locus_tag="U1396_000649"
     CDS             762..1181
                     /gene="ruvX"
                     /locus_tag="U1396_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEM5341857.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLER
                     LTELVEQYKVDKFVVGLPKNMNNTSGPRVEASQAYGDLLTERYKLPVDYQDERLTTVA
                     AERMLIEQADISRGKRKKVIDKLAAQLILQNYLDRTF"
     gene            1193..1513
                     /locus_tag="U1396_000650"
     CDS             1193..1513
                     /locus_tag="U1396_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HEM5341858.1"
                     /translation="MAHHHDHEHDHNHDERELITLVDDQGNETLFEILLTIDGQEEFG
                     KNYVLLIPASAEEDENGEVEIQAYSYIENENGTEGDLQPIPEDATAEWDMIEEVFNSF
                     MEEE"
     gene            1771..2349
                     /locus_tag="U1396_000651"
     CDS             1771..2349
                     /locus_tag="U1396_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEM5341859.1"
                     /translation="MKDSFTERSKRLSEELERCLLADKNILVILDIMDRLNLSDCWLC
                     AGTIRNFIWNQYSFDEETDVDLVFFDENISYEETMEIESDLYQNYPAYRWELKNQVYM
                     HIHSPNTKPNQSSRDAIEKFPERCTAIGICRTERNKLEIFAPFGLDDIYAYQVRPTPH
                     FLVDPNRMELYRQRILKKQWKKRWLSLTVKET"
     gene            2422..2688
                     /locus_tag="U1396_000652"
     CDS             2422..2688
                     /locus_tag="U1396_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5341860.1"
                     /translation="MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDR
                     LFHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLINDRLENMKN"
     gene            3010..3318
                     /gene="rpsJ"
                     /locus_tag="U1396_000653"
     CDS             3010..3318
                     /gene="rpsJ"
                     /locus_tag="U1396_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEM5341861.1"
                     /translation="MANKKIRIRLKAYEHRTLDAAAAKIVETATRTGAQVAGPVPLPT
                     ERSLYTIIRATHKYKDSREQFEMRTHKRLIDIINPTQKTVDALMKLDLPSGVNVEIKL
                     "
     gene            3531..4157
                     /gene="rplC"
                     /locus_tag="U1396_000654"
     CDS             3531..4157
                     /gene="rplC"
                     /locus_tag="U1396_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002986659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEM5341862.1"
                     /translation="MTKGILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETD
                     GYAAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEGLEVGQEITVETFAA
                     GDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLAG
                     RMGGNRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAVKAGK"
     gene            4182..4805
                     /gene="rplD"
                     /locus_tag="U1396_000655"
     CDS             4182..4805
                     /gene="rplD"
                     /locus_tag="U1396_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEM5341863.1"
                     /translation="MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASL
                     RQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     QKVRRLALKSVYSEKVAENKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGN
                     EFAALSARNIPGVKVATATTASVLDIANADKLLVTQAAISKIEEVLA"
     gene            4805..5104
                     /locus_tag="U1396_000656"
     CDS             4805..5104
                     /locus_tag="U1396_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007518994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEM5341864.1"
                     /translation="MNLYDVIKKPVITESSMGQLEAGKYVFEVDTRAHKLLIKQAVEA
                     AFEGVKVANVNTINVKPKTKRVGRYVGRTNKVKKAIITLAADSKAIELFATADAE"
     gene            5122..5955
                     /gene="rplB"
                     /locus_tag="U1396_000657"
     CDS             5122..5955
                     /gene="rplB"
                     /locus_tag="U1396_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEM5341865.1"
                     /translation="MGIKVYKPTTNGRRNMTSLDFAEITTSTPEKSLLVALKSKAGRN
                     NNGRITVRHQGGGHKRFYRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGVKA
                     YIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGA
                     SAQVLGQEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGKAPVGRKAPSTPWGKPALGLKTRNKKAKSDKLIVRRRNQ
                     K"
     gene            6057..6338
                     /gene="rpsS"
                     /locus_tag="U1396_000658"
     CDS             6057..6338
                     /gene="rpsS"
                     /locus_tag="U1396_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEM5341866.1"
                     /translation="MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSF
                     IGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRRK"
     gene            6356..6700
                     /gene="rplV"
                     /locus_tag="U1396_000659"
     CDS             6356..6700
                     /gene="rplV"
                     /locus_tag="U1396_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEM5341867.1"
                     /translation="MAEITSAKATARTVRVSPRKSRLVLDNIRGKSVADAIAILKFTP
                     NKAAGIIEGVLNSAIANAENNFGLEKANLVVSEAFANEGPTLKRFRPRAKGSASPINK
                     RTAHITVVVAEK"
     gene            6713..7366
                     /gene="rpsC"
                     /locus_tag="U1396_000660"
     CDS             6713..7366
                     /gene="rpsC"
                     /locus_tag="U1396_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEM5341868.1"
                     /translation="MGQKVHPIGMRVGIIRDWDAKWYAEKEYADYLHEDLAIRNFIKK
                     ELADASTSTIEIERAVNKVIVSIHTAKPGMVIGKAGSNVDALRAQLNKLTGKQVHINI
                     IEIKQPDLDAHLVGESIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGAD
                     IARAEGYSEGTVPLHTLRADIDYAWEEALTTYGKLGVKVWIYRGEVLPARKNTKGGK"
     gene            7370..7783
                     /gene="rplP"
                     /locus_tag="U1396_000661"
     CDS             7370..7783
                     /gene="rplP"
                     /locus_tag="U1396_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003029477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEM5341869.1"
                     /translation="MLVPKRVKHRREFRGKMRGEAKGGKQVDFGQYGLQATTSSWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKV
                     MFEVAGVSEEIAREAFRLAGHKLPVKVKFVKREAE"
     gene            7793..7999
                     /locus_tag="U1396_000662"
     CDS             7793..7999
                     /locus_tag="U1396_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEM5341870.1"
                     /translation="MKLQEIKDFVKELRGLSQEELAKKENELKKELFELRFQAAAGQL
                     EQTARLNEVKKQIARIKTVQSETK"
     gene            8023..8283
                     /gene="rpsQ"
                     /locus_tag="U1396_000663"
     CDS             8023..8283
                     /gene="rpsQ"
                     /locus_tag="U1396_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEM5341871.1"
                     /translation="MERNNRKVLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKK
                     YKAHDENNVAKEGDIVRIMETRPLSATKRFRLVEVVEEAVII"
     gene            8308..8676
                     /gene="rplN"
                     /locus_tag="U1396_000664"
     CDS             8308..8676
                     /gene="rplN"
                     /locus_tag="U1396_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEM5341872.1"
                     /translation="MIQTETRLKVADNSGAREILTIKVLGGSGRKFANIGDIIVASVK
                     QATPGGAVKKGDVVKAVIVRTKTGARRADGSYIKFDENAAVIIREDKNPRGTRIFGPV
                     ARELRDGGFMKIVSLAPEVL"
     gene            8815..9120
                     /gene="rplX"
                     /locus_tag="U1396_000665"
     CDS             8815..9120
                     /gene="rplX"
                     /locus_tag="U1396_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEM5341873.1"
                     /translation="MFVKKGDKVRVIAGKDKGVEAVVVTALPKVNKVIVEGVNIVKKH
                     QKPNSENPQGAIVEKEAPIHVSNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD"
     gene            9144..9686
                     /gene="rplE"
                     /locus_tag="U1396_000666"
     CDS             9144..9686
                     /gene="rplE"
                     /locus_tag="U1396_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEM5341874.1"
                     /translation="MANRLKEKYLNEVVPALTEQFNYSSVMAVPKVDKIVLNMGVGDA
                     VSNAKNLEKAAQELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLD
                     KLVTVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKTRGMDIVIVTT
                     ANTDEESRALLTGLGMPFAK"
     gene            9701..9886
                     /locus_tag="U1396_000667"
     CDS             9701..9886
                     /locus_tag="U1396_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEM5341875.1"
                     /translation="MAKKSMIAKNKRPAKFSTQAYTRCEKCGRPHSVYRKFKLCRVCF
                     RDLAYLGQIPGVTKASW"
     gene            10211..10609
                     /gene="rpsH"
                     /locus_tag="U1396_000668"
     CDS             10211..10609
                     /gene="rpsH"
                     /locus_tag="U1396_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEM5341876.1"
                     /translation="MVMTDPIADFLTRIRNANQAKHEVLEVPASNIKKGIATILKNEG
                     FVKNVEFIEDDKQGIIRVFLKYGPNGEKVITNLKRVSKPGLRVYSKREDIPKVLNGLG
                     IAIISTSEGLLTDKQARQKNVGGEVIAYVW"
     gene            11074..11610
                     /gene="rplF"
                     /locus_tag="U1396_000669"
     CDS             11074..11610
                     /gene="rplF"
                     /locus_tag="U1396_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEM5341877.1"
                     /translation="MSRIGNKVITLPAGVELAQNNGVVTVKGPKGELTREFPTAIEIR
                     VEGTEVTLHRPNDSKEMKTIHGTSRANLNNMVVGVSEGFKKELEMRGVGYRAQLAGNK
                     LTLAVGKSHPDEVVAPEGITFEVPTPTQIVVSGINKEVVGQTAAYIRSLRAPEPYKGK
                     GIRYVGEFVRRKEGKTGK"
     gene            11699..12055
                     /gene="rplR"
                     /locus_tag="U1396_000670"
     CDS             11699..12055
                     /gene="rplR"
                     /locus_tag="U1396_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEM5341878.1"
                     /translation="MISKPDKNKIRQKRHRRVRGKISGTAARPRLNIFRSNTGIYAQV
                     IDDVAGVTLASASTLDKEVSKGTKTEQAVVVGKLVAERAVAKGISEVVFDRGGYLYHG
                     RVKALAESARENGLKF"
     gene            12074..12568
                     /gene="rpsE"
                     /locus_tag="U1396_000671"
     CDS             12074..12568
                     /gene="rpsE"
                     /locus_tag="U1396_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEM5341879.1"
                     /translation="MAFKDNAVEIEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGR
                     VGFGTGKAQEVPEAIRKAVESAKKNMIEVPMVGTTIPHEVRSEFGGARVLLKPASEGS
                     GVAAGGATRAVIELAGIADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISV
                     SDLA"
     gene            12583..12765
                     /gene="rpmD"
                     /locus_tag="U1396_000672"
     CDS             12583..12765
                     /gene="rpmD"
                     /locus_tag="U1396_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEM5341880.1"
                     /translation="MAQIKITLTKSPIGRKPEQRKTVVALGLGKLNSSVVKEDNPAIL
                     GMVNAISHLVTVEEVK"
     gene            12901..13341
                     /gene="rplO"
                     /locus_tag="U1396_000673"
     CDS             12901..13341
                     /gene="rplO"
                     /locus_tag="U1396_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEM5341881.1"
                     /translation="MKLHELQPATGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGG
                     GVRPGFEGGQTPLFRRLPKRGFTNINAKEYAIVNLDQLNAFEDGAEVTPVVLIEAGIV
                     KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITSKGGSVEVI"
     gene            13355..14665
                     /gene="secY"
                     /locus_tag="U1396_000674"
     CDS             13355..14665
                     /gene="secY"
                     /locus_tag="U1396_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEM5341882.1"
                     /translation="MFFKLLKDALKVKLVRSKILFTIFILFVFRVGTHITVPGVNAKS
                     LEALSNLPFLNMLSLVSGNAMRNFSVFALGVSPYITASIIVQLLQMDILPKFVEWGKQ
                     GEVGRRKLNQATRYISLVLAFVQSIGITAGFNALSGAKLTNMPLNWQTYLLIGAILTT
                     GSIIVTWLGEQISEKGYGNGTSMIIFAGIISSLPGTFHEIYIDRFVNIESSRLGESAI
                     FVAALVVLIFFVVYFTTFVQQAEYKLPIQYTKRAQGAPSSSYLPLKLNPAGVIPVIFA
                     GSITAVPTSLIQYFASQNKSAGWLLTVQEYFDYSTAKGMIVYAGLIIAFTFFYTFVQV
                     NPEKTAESLQKSAAYIHGVRPGNGTEQFLSKLLTRLAVIGALFLSFVALLPILAQNLF
                     GLSSSIAFLGTSLIIVISTSIEGIKQLEGYLLKRKYVGFLEITE"
     gene            14759..15400
                     /locus_tag="U1396_000675"
     CDS             14759..15400
                     /locus_tag="U1396_000675"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEM5341883.1"
                     /translation="MNLLIMGLPGAGKGTQAAKIVEKFNVAHISTGDMFRAAMANQTE
                     MGILAKSYIDKGDLVPDEVTNGIVKERLVQDDIKEKGFLLDGYPRTIEQAHALDENLA
                     DLGIELQGVINIEIDPSKLVERLSGRIIHKETGETFHKVFNPPVGDYKEEDFYQREDD
                     KPESVKRRLEVNIAQGQPIIDHYRAKGLVHDIEGDQDIDLVFQAIDTVLSKLQ"
     gene            15522..15740
                     /gene="infA"
                     /locus_tag="U1396_000676"
     CDS             15522..15740
                     /gene="infA"
                     /locus_tag="U1396_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEM5341884.1"
                     /translation="MAKEDVIEIEGKVVDTMPNAMFTVELENGHQVLATVSGKIRKNY
                     IRILVGDRVTVELSPYDLTRGRITYRFK"
     gene            15765..15881
                     /gene="rpmJ"
                     /locus_tag="U1396_000677"
     CDS             15765..15881
                     /gene="rpmJ"
                     /locus_tag="U1396_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013773089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEM5341885.1"
                     /translation="MKVRPSVKPICEYCKVIRRNGRVMVICPANPKHKQRQG"
     gene            15901..16266
                     /gene="rpsM"
                     /locus_tag="U1396_000678"
     CDS             15901..16266
                     /gene="rpsM"
                     /locus_tag="U1396_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEM5341886.1"
                     /translation="MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVR
                     VKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNT
                     KNNARTRKGKAVAIAGKKK"
     gene            16284..16667
                     /gene="rpsK"
                     /locus_tag="U1396_000679"
     CDS             16284..16667
                     /gene="rpsK"
                     /locus_tag="U1396_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEM5341887.1"
                     /translation="MAKPTRKRRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSS
                     AGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAG
                     LEVTAIRDVTPVPHNGARPPKRRRV"
     gene            16712..17650
                     /locus_tag="U1396_000680"
     CDS             16712..17650
                     /locus_tag="U1396_000680"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEM5341888.1"
                     /translation="MIEFEKPTITKIDENKDYGRFVIEPLERGYGTTLGNSLRRVLLA
                     SLPGAAVTSIKIDGVLHEFDTVPGVREDVMQIILNIKGIAVKSYVEDEKKIELDVVGP
                     AEVTAGDILTDSDIEIVNPDHYLFTIADGATFKAVLTVNSGRGYVPAEDNKKDDAPVG
                     TLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTLEINTNGTIVPEDALGLSARILMEH
                     LGLFTDLTEVAKSAEVMKEAEVASDDRMLDRTIEELDLSVRSYNCLKRAGINTVFDLT
                     EKTEPEMMKVRNLGRKSLEEVKVKLADLGLGLKKDK"
     gene            17665..18051
                     /gene="rplQ"
                     /locus_tag="U1396_000681"
     CDS             17665..18051
                     /gene="rplQ"
                     /locus_tag="U1396_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEM5341889.1"
                     /translation="MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTV
                     EKMITLGKRGDLHARRQAAAFVRNEIASENYDEATDKYTSTTALQKLFSEIAPRYAER
                     NGGYTRILKTEPRRGDAAPMAIIELV"
     gene            18362..19217
                     /locus_tag="U1396_000682"
                     /pseudo
     CDS             18362..19217
                     /locus_tag="U1396_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            19424..19894
                     /locus_tag="U1396_000683"
     CDS             19424..19894
                     /locus_tag="U1396_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5341890.1"
                     /translation="MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLE
                     AQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKRKFDRMPHEDIHELSHAIQSPGL
                     INDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR"
BASE COUNT         6553 a         3774 c         4324 g         5564 t
ORIGIN      
        1 attaaaattt atactgtatc tagttgtact tcttgtaaga aagcgaaaaa ttggttaaat
       61 gctcaccaat tatcttataa tgagcataat cttgcgaagg aagccattac taaggaagaa
      121 atcctaaaca tcttaacaaa aacagagaat ggtattgcaa gtatcgtatc gtcaaaaaac
      181 cgttatgcaa agagtctgga ctttgatatt gaagagttga gtgtgaacga ggtcattgat
      241 ttaattacct ctaacccacg tattttgaag agtccaatct tgattgatga gaaacgactt
      301 caagtgggct ataaagaaga tgatatacgc gctttcttgc cacgtgcagt gcgcaatgtt
      361 gaaaatgctc aagctcgtat gagagcagct ctataagatg tacaaaagga ctcttttggg
      421 gttctttttg cgcatttttt gagaataatt aaaatttgtg atataatgta aaaaataggg
      481 aaagaaggtg taagtatggg atttaccgaa gaaaccgttc gttttcgcct agatgataca
      541 gataaacaag aaatcagcaa gacattgact agtgtttatc gttcgctaga ggaaaagggc
      601 tataatccga ttaaccaaat cattggctat gtattaagtg gggaccctgc ttatattcct
      661 cgctataatg atgcccgcaa tcagattcgt aagcatgaac gagatgaaat cattgaagaa
      721 ttggtgcgct actatttgaa agggaatggg attgacctct aatgagaata atgggattag
      781 acgtcggttc caagacagtt ggtgtagcca tttcagatcc gttaggtttc acggcccaag
      841 ggttggaaat catcccaatc gatgaagaaa agggcgaatt cggtctggag cgtttgaccg
      901 aacttgtaga acagtacaag gttgataaat ttgttgtagg cttgccgaag aatatgaata
      961 atactagtgg tccacgtgtg gaagctagtc aagcttacgg tgatttattg actgagcgtt
     1021 acaaacttcc agttgattat caggatgaac gtttaacaac tgttgcagca gaacggatgc
     1081 tgattgagca agcggatatc agccgaggaa aacgcaagaa agttatcgat aaattagcag
     1141 ctcagctgat tttacaaaat tatttagata gaacatttta aaggagattc taatggcaca
     1201 tcatcatgac catgaacacg accacaacca cgacgaacgt gaattgatta ctttggtaga
     1261 cgaccaaggt aacgaaacac tttttgaaat cttattgacg attgacggtc aagaagagtt
     1321 tggtaagaac tatgttctct tgattcctgc aagtgcagaa gaagatgaga acggagaagt
     1381 tgaaatccaa gcctactcat acattgagaa tgagaatggc acagaaggcg atttgcaacc
     1441 tatcccagaa gacgcaacag cagaatggga tatgattgaa gaagtcttca acagctttat
     1501 ggaagaggaa taaaaaggtc cagtggacct ttttatcatg agcctgaaaa caagaaagcg
     1561 aattaaggtc cggtggacct ttttatcatg agcctgaaaa caagaaagtg aattaaggtc
     1621 cagtggacct ttttgtcatg agcctgaaaa caagaaagcg aattaaggtc cggtggagtg
     1681 aagcagtctg ggggagactg tttcagcccg agttaagaaa cagcaaggcg aggaatggat
     1741 tatgagccag aaaatcaaaa gggaggccag atgaaagata gttttacaga aagaagtaag
     1801 aggctgagtg aggaattaga gaggtgtcta ctggctgata aaaatatttt ggtcatatta
     1861 gacataatgg atagactgaa tttatcagat tgctggctct gtgcgggaac tatccgtaat
     1921 ttcatttgga atcaatacag ttttgatgaa gaaacagatg ttgatcttgt gttttttgat
     1981 gaaaatattt cttatgaaga gacaatggaa atagaaagcg atttatatca aaactatcca
     2041 gcctatcgat gggaattaaa aaatcaagtg tatatgcata tccatagtcc gaatactaaa
     2101 ccgaatcaat catcaaggga tgcgattgaa aaatttccag aaagatgcac agcgataggt
     2161 atttgtcgaa cagaaagaaa taaattagaa atatttgctc cttttggatt ggatgacatt
     2221 tatgcttacc aagtacggcc aacaccacat ttcttagtgg atcctaatcg catggaattg
     2281 tatcgacaaa gaattcttaa gaaacagtgg aaaaagaggt ggctatcgct aacagtaaaa
     2341 gagacttaac tcccaccaag taagtaggcc aaaaacagta ttttttataa actaaaacaa
     2401 tcaactacgg gagattatgt tatggaattt gaaacggttt gtttgaaggt tagaaactta
     2461 ggtaggctat attgctactt caaagttaaa tttagaaacc atatcgaggc tataattcgt
     2521 aaacaggaaa gtcaaaaatg taaatttgat cgtctcttcc atgaagatat tcatagtttg
     2581 attcaatcac cgagcttggg taatgatgag ttgctgatgt tatggggtct cctgagagat
     2641 tatcgaaaaa atttaatcaa tgaccgactt gaaaatatga aaaattgata agcggacaga
     2701 gttttactgg cagtcaaaaa aataattcga gacttacaag gatacttgaa aaaaacgttg
     2761 atagttaact caaataaaaa ataagtaatg aagaatcctg aaataaaagt tttgggattt
     2821 tttgaatttt tgagtaaaaa ctcttgcaat ggcaagtgga atctggtaga atgttctagt
     2881 gccgtaaaaa atacggctgt agctttgatg caagaggttg cgacacgctc ggttgcattg
     2941 ccacgcaaca cgtgttggtt ttcttgtgga gctagcctat tatgttaaat agacgaaaag
     3001 gagaaaaaga tggcaaacaa aaaaattcgc atccgcttga aagcgtacga acaccgtaca
     3061 cttgatgcag cagctgcaaa aatcgttgaa actgcaacac gtacaggtgc tcaagtagca
     3121 ggtccagttc cgcttccaac agaacgtagc ctctacacaa tcatccgtgc gactcacaag
     3181 tataaagact ctcgtgagca gttcgaaatg cgtacacaca aacgtttgat cgacatcatt
     3241 aacccaactc aaaaaacagt tgatgctttg atgaaattgg atcttccaag tggtgtaaac
     3301 gtagaaatca aattgtaatc aagtagcaag gtaaactaaa agcaagtgtt cataattgaa
     3361 cacgggctaa actccgtgtg aaaaagataa actttcctag aaacagaagt ttcttcgtca
     3421 agtttcctat tttcactttg agtttgacgc cctttgtatc ttggtttgag catgaaaaac
     3481 gctcgttaaa aactttttaa ctataaaata agaaaaggaa tatttttctc atgacaaaag
     3541 gaatcttagg gaaaaaagtg ggaatgactc aaatcttcac tgaatctggt gaatttatcc
     3601 ctgttactgt catcgaagca actccaaacg ttgttcttca agtgaaaaca gttgaaactg
     3661 acggttatgc agcagttcaa gttggttttg atgacaaacg tgaagtattg agcaacaaac
     3721 ctgccaaagg ccatgtagct aaagctaaca cagctcctaa gcgcttcatt cgtgaattca
     3781 aaaacattga aggcttggaa gttggacaag aaattacagt tgaaactttc gcagctggtg
     3841 atgttgttga tgtaactggt acatctaaag gtaaaggttt ccaaggcgtt atcaaacgcc
     3901 atggtcaatc acgtggtcct atggctcacg gttctcgtta ccaccgtcgt ccaggttcta
     3961 tgggtcctgt tgcacctaac cgtgtattca aaggtaaaaa ccttgcaggt cgcatgggcg
     4021 gcaaccgtgt aacaattcaa aaccttgaag ttgtacaagt tgttccagaa aagaacgtta
     4081 tccttatcaa aggtaacgta ccaggtgcta agaaatctct tatcactatc aagtcagcag
     4141 ttaaagctgg taaataataa ggaaagggga aatcagtcga aatggcaaac gtaacattat
     4201 ttgaccaaac tggtaaacaa gctggtgaag tagttcttaa cgatgcgatc tttggtatcg
     4261 agccaaacca agcagttgta tttgatgtga tcatcagcca acgtgctagc cttcgtcaag
     4321 gtactcacgc agttaaaaac cgttcagcag tctcaggtgg cggacgcaaa ccatggcgtc
     4381 aaaaaggaac tggacgtgct cgtcaaggtt ctatccgttc accacaatgg cgtggcggtg
     4441 gcgtagtctt cggaccaact ccacgttcat acgcgtacaa acttccacaa aaagttcgtc
     4501 gcttggcact taaatctgtt tactcagaaa aagttgctga aaacaaattt gtagctgtta
     4561 actcgcttga attcacagct ccaaaaactg ctgaatttgc aaaagtactt gcagcattga
     4621 gcattgattc taaagtcctt gttattcttg aagaaggcaa cgaattcgca gctctttctg
     4681 ctcgtaacat cccaggagtt aaagttgcaa ctgcaacaac tgcaagcgta cttgacatcg
     4741 caaatgcaga caaacttctt gtaactcaag cagctatctc taaaattgag gaggttcttg
     4801 cataatgaat ttgtatgatg ttatcaaaaa acctgtcatc acagaaagct caatgggcca
     4861 actcgaagca ggcaagtatg tatttgaagt tgacactcgt gcgcacaaac tcttgatcaa
     4921 gcaagctgtt gaagctgcat tcgagggtgt taaagttgca aatgttaaca caatcaacgt
     4981 gaaacctaaa acaaaacgcg taggtcgtta tgtaggtcgc acaaacaaag tgaaaaaagc
     5041 aatcatcaca ttggctgctg attcaaaagc gatcgaattg ttcgctacag ctgacgctga
     5101 ataatcaaag gaggaattaa cgtgggtatt aaagtttata aaccaacgac aaatggccgt
     5161 cgtaacatga cttctttgga cttcgctgaa atcacaacaa gcactccaga aaaaagcttg
     5221 cttgttgctt tgaagagcaa agctggtcgt aacaataacg gtcgcatcac tgttcgtcac
     5281 caaggtggcg gtcacaaacg tttctaccgt ttggtagact tcaaacgtaa caaagatggc
     5341 gttgaagcaa tcgttaaaac tatcgaatac gatccaaacc gttcagcaaa catcgctctt
     5401 gtacactaca cagacggtgt taaagcttac atcattgctc ctaaaggtct tgaagttggt
     5461 caacgcatcg tttcaggtcc agaagcagat atcaaagttg gtaacgcact tccacttgca
     5521 aacatcccag tcggtactgt tgttcacaac atcgagttga aaccaggtcg cggtggtgag
     5581 ttggttcgtg ctgctggtgc atctgcacag gttcttggtc aagaaggtaa atacgttctt
     5641 gttcgccttc aatcaggtga agttcgtatg atccttggta cttgccgtgc tactgttggt
     5701 actgtaggta acgaacaaca tggccttgtt aaccttggta aagcaggtcg tagccgttgg
     5761 aaaggtatcc gtccaacagt tcgcggttct gtaatgaacc ctaacgatca cccacacggt
     5821 ggtggtgaag gtaaagcacc agttggtcgt aaagcaccat ctacaccatg gggtaaacca
     5881 gctcttggtt tgaaaactcg taacaagaaa gctaaatctg acaaacttat cgttcgtcgt
     5941 cgcaaccaaa aataatctat tcttggttgc ttagcattct atatcatccg ccaactcggt
     6001 agcccgcaaa gcgggcaagc cgctgtggta catattttaa aggagaaaac actaaaatgg
     6061 gacgtagtct taaaaaagga cctttcgtcg atgagcattt gatgaaaaaa gttgaagctc
     6121 aagcaaacga cgaaaagaaa aaagtaatta aaacttggtc acgtcgttca acgattttcc
     6181 caagtttcat cggttataca atcgcagttt acgatggacg taaacacgta cctgtataca
     6241 ttcaagaaga catggtaggt cacaaacttg gtgaatttgc accaactcgt acttacaaag
     6301 gtcatgctgc tgacgacaag aaaactcgtc gtaaataatt taggaggaaa acacaatggc
     6361 agaaattact tcagctaaag caactgctcg cacagtacgt gtttcacctc gtaaatcacg
     6421 tcttgtcttg gataacatcc gtggcaaaag cgtagcagac gcaatcgcaa tcttgaaatt
     6481 cacaccaaac aaagctgcag gcattatcga gggagtttta aactcagcaa tcgctaacgc
     6541 tgaaaacaac tttggtttgg aaaaagctaa cttggtagtc agcgaagcat tcgcaaacga
     6601 aggaccaacg ttgaaacgtt tccgtccacg tgcgaaaggt tcagcttcac caattaacaa
     6661 acgcacagct cacatcactg tagttgtggc agagaaataa ggaggtaaaa acgtgggtca
     6721 aaaagtacat ccaattggta tgcgtgttgg catcatccgt gattgggatg ctaaatggta
     6781 tgctgaaaaa gaatacgcgg attaccttca tgaagatctt gcaatccgca actttatcaa
     6841 aaaagaattg gctgatgcgt caacatcaac aatcgaaatc gaacgtgctg taaataaagt
     6901 aatcgtttct atccacactg ctaagccagg tatggttatc ggtaaagctg gtagcaacgt
     6961 tgatgcactt cgtgctcaat tgaacaaatt gactggtaag caagtacaca tcaacatcat
     7021 cgaaatcaaa caacctgatt tggatgcaca ccttgttggt gagtcaatcg ctcgtcaatt
     7081 ggagcaacgt gtggcattcc gccgtgctca aaaacaggct atccaacgtg caatgcgcgc
     7141 tggtgcaaaa ggtatcaaaa cacaagtttc tggtcgtttg aacggtgctg atattgcccg
     7201 tgcagaaggc tactcagaag gaactgttcc tcttcataca cttcgtgcgg atatcgacta
     7261 cgcttgggaa gaagctttga caacttacgg taaacttggt gttaaagtat ggatctaccg
     7321 tggtgaagtt cttccagctc gtaaaaacac taaaggaggt aaataacaaa tgttagtacc
     7381 taaacgtgta aaacaccgtc gtgaattccg tggaaaaatg cgcggtgaag ctaaaggtgg
     7441 aaaacaagta gactttggtc aatacggtct tcaagcaact actagctcat ggattacaaa
     7501 ccgccaaatc gaagctgccc gtatcgctat gacgcgttac atgaaacgtg gtggtaaagt
     7561 ttggatcaag atcttcccac acaaatcata cactgctaaa gctatcggtg tacgtatggg
     7621 ttctggtaaa ggtgctcctg aaggttgggt agctccagtt aaacgcggta aggttatgtt
     7681 tgaagtagct ggcgtttctg aagaaatcgc tcgcgaagca ttccgccttg ctggtcacaa
     7741 attgccagtt aaagttaaat tcgtaaaacg tgaagcagaa taaggagaag acatgaaact
     7801 tcaagaaatt aaagattttg taaaagaact tcgtggcctt tctcaagaag aacttgctaa
     7861 gaaagaaaac gaattgaaga aagaactctt cgaacttcgt ttccaagctg ctgctggtca
     7921 acttgagcaa actgctcgtt tgaacgaagt gaagaaacaa attgcacgta tcaaaactgt
     7981 gcaatctgaa actaaataat agattgggaa aggagaattt caatggaacg caataatcgt
     8041 aaagttcttg ttggacgcgt agtatctgac aaaatggaca aaacaatcac agttgtagtt
     8101 gaaactaaac gtaaccaccc agtctatggt aaacgtatta actactctaa aaagtacaaa
     8161 gctcatgatg aaaacaatgt tgctaaagaa ggcgatatcg ttcgtatcat ggaaactcgc
     8221 ccactttcag ctacaaaacg tttccgtctt gtagaagttg tggaagaggc agttatcatt
     8281 taatcaacct gaaaggagaa aattgacatg attcaaacag aaactcgttt gaaagttgct
     8341 gacaacagtg gcgcacgtga aatcttgaca atcaaagttc ttggtggttc aggacgtaaa
     8401 ttcgcgaaca tcggcgacat catcgttgct tcagtaaaac aagctactcc tggtggtgcg
     8461 gttaaaaaag gtgacgttgt taaagccgtt atcgttcgta ctaagacagg tgctcgtcgt
     8521 gctgatggtt catacatcaa attcgatgag aatgctgcag ttatcatccg tgaagacaaa
     8581 aaccctcgcg gaactcgtat ctttggccca gtggcacgcg aattgcgtga tggcggtttc
     8641 atgaaaatcg tttcattggc accagaagta ctttaatcaa atagttttag gaaatttgtt
     8701 acaaactaac gaagtctgtg acgggtttag taaactagaa aacaaactaa gtcccctggt
     8761 taaatcacta accagggtgc ccattagggc gtaagaaatt ataggagaaa tcaaatgttt
     8821 gtaaaaaaag gcgataaagt tcgcgtaatc gctggtaaag acaaaggcgt tgaagcagtt
     8881 gtcgtaacag cacttccaaa agtaaacaaa gttattgttg aaggtgttaa catcgttaag
     8941 aaacaccaaa aaccaaacag cgaaaaccct caaggcgcta tcgttgaaaa agaagctcca
     9001 atccatgtgt caaacgttca agttcttgac aaaaatggtg ttgcaggacg cgttggttac
     9061 aagtttgtag acggcaaaaa agttcgctac aacaaaaaat caggcgaagt acttgattaa
     9121 tcacgaagga aaggagaagt ataatggcaa atcgtttaaa agaaaaatat cttaatgaag
     9181 tagttcctgc tttgactgaa caatttaact attcttcagt tatggctgtg ccaaaagttg
     9241 ataagatcgt tttgaacatg ggtgttggtg acgctgtttc taacgctaaa aaccttgaga
     9301 aagctgctca agaattggct ttgatctcag gtcaaaaacc acttatcact aaagctaaga
     9361 aatcaatcgc cggcttccgt cttcgtgagg gtgttgcgat cggtgcgaaa gtaactcttc
     9421 gtggcgaacg tatgtatgaa ttcttggaca aattggttac agtttcactt ccacgtgtac
     9481 gtgacttcca cggtgtacca actaagtcat ttgacggacg tggtaactac acacttggtg
     9541 tgaaagagca attgatcttc ccagaaatca acttcgacga tgttgataaa actcgcggta
     9601 tggatatcgt tatcgttaca actgctaaca ctgacgaaga atcacgtgca ttgcttactg
     9661 gccttggtat gccgtttgca aaataagagg gagagaataa atggctaaaa aatcaatgat
     9721 cgctaagaac aaacgcccag ctaagttctc tacacaagct tacacacgct gtgaaaaatg
     9781 tggacgtcca cactcagttt accgcaaatt caaattgtgc cgtgtatgct tccgcgactt
     9841 ggcttacctt ggacaaattc caggcgtaac aaaagcttct tggtaagata agatgtgaga
     9901 gcgtttagca accaacgcaa agataggaga ttttacaacg aagtttactt ctaggatttg
     9961 ctaagcttgt agctcgaact caattaaaac atgatactaa gggcgtgacg gacaaagtga
    10021 aaataggaac tctagcgaag aacgcttgcg ttctagatag agttatcttt ttcacacagg
    10081 ccgtagcccg agttcaaatg ttaggatgca atagcatcat actagcaaat tcaaactttg
    10141 cattgcctat caggcacaca ttaactagca agtgatctaa tcaaactgct agtaagagga
    10201 gaaacaacaa atggttatga ctgacccaat tgcagatttt ttgacacgta ttcgtaacgc
    10261 taaccaagca aaacacgaag tgcttgaagt acctgcatca aacatcaaaa aaggtattgc
    10321 tacaatcctt aaaaacgaag gttttgtaaa aaacgttgaa ttcatcgaag atgacaaaca
    10381 aggcatcatc cgtgtattct tgaaatacgg accaaacggt gaaaaagtta tcacaaactt
    10441 gaaacgcgtt tcaaaaccag gtcttcgtgt ttactcaaaa cgtgaagata ttcctaaagt
    10501 tcttaacgga cttggtatcg caatcatctc aacatcagaa ggtcttttga ctgacaaaca
    10561 agctcgtcaa aagaacgttg gtggtgaggt tatcgcatac gtttggtaat cttttagctt
    10621 ctaatttcgt catgtgcctg tgttagagcg tcttgacata ctcaagtatg gtctgcgtcg
    10681 ctctgccttg tcacatttag aaattgaaac ctaaaagcat gatacaaatg cgagaggacc
    10741 agttcttcgt gcgtgttcaa atctgactta ctgattattt ggtatcatgc aaccaaacta
    10801 gaacaagatt cactaattga acacgcctac aactctttga aaaaagtgaa aagtgtttca
    10861 gaaatgctca ccttgttcgt cgtaaacgtc tgaactttct ctggccttcg gtcaggaaag
    10921 tcctagtcgt tctgacgagg gtgcgtctgc gaaatcaaag acttcggact taccgcttat
    10981 ttttcttcga gttgcttaac ggctttgtat cttgttcacc ccgtgaaaac tagtcgctcg
    11041 acggcttgat aatttaacag gagaattaaa aatatgtcac gtattggtaa taaagtaatt
    11101 acattgcctg ctggcgttga gcttgctcaa aacaacggcg tggtaactgt aaaaggacct
    11161 aaaggggaat tgactcgtga attcccaact gctattgaaa tccgtgtgga aggtacagaa
    11221 gttactcttc accgtccaaa cgattcaaaa gaaatgaaga ctattcacgg tactagccgt
    11281 gctaacctca acaacatggt tgttggtgtt tctgaaggct tcaaaaaaga acttgaaatg
    11341 cgtggtgtcg gttaccgtgc tcaattggct ggtaacaaat tgacacttgc tgttggtaaa
    11401 tcacatccag atgaagtggt tgcaccagaa ggtattacat ttgaagttcc aacaccaaca
    11461 caaatcgtcg tgtctggtat caacaaagaa gttgttggtc aaacagcagc ttacatccgt
    11521 agccttcgcg ctcctgagcc atacaaaggt aaaggtatcc gctacgttgg tgaattcgtt
    11581 cgccgtaaag aaggtaaaac aggtaaataa tagcttgctg aggtggctta gccacctggc
    11641 tgactatttc tcaaattgtt tcgcaagaaa cagaatcata cattaagagg tgaatattgt
    11701 gatttcaaaa ccagataaaa acaaaatccg ccaaaaacgc caccgtcgcg ttcgcggtaa
    11761 aatctctgga actgctgctc gcccacgttt gaacattttc cgttctaata caggcatcta
    11821 cgctcaagtg attgatgacg tagcgggtgt aacgctcgca agcgcttcta ctcttgataa
    11881 agaagtttca aaaggtacta agacagaaca agctgttgtt gtaggtaaac tcgttgctga
    11941 acgcgcggta gctaaaggta tttctgaagt ggtctttgac cgcggtggat atctctatca
    12001 cggacgtgtg aaagctttgg ctgaatcagc tcgtgaaaac ggattgaaat tctaataggg
    12061 aggacactaa gaaatggcat tcaaagataa cgcagttgaa attgaagaac gcgtagtagc
    12121 catcaaccgt gttacaaaag ttgttaaagg tggacgtcgt cttcgttttg cagctcttgt
    12181 ggttgttggt gaccgtaacg gtcgcgtagg tttcggtact ggtaaagctc aagaagtacc
    12241 agaagctatc cgtaaagcag ttgaatctgc taagaaaaac atgattgaag taccaatggt
    12301 tggtacaaca atccctcacg aagttcgctc agaatttggc ggcgctcgtg tattgttgaa
    12361 acctgcttca gaaggttctg gggttgctgc cggtggtgca actcgtgccg taatcgaatt
    12421 ggcaggtatc gcagatgtga cttctaagtc acttggttca aacacaccaa tcaacatcgt
    12481 tcgcgcaaca gttgaaggtt tgaaacaatt gaaacgtgct gaagaagtgg ctgcacttcg
    12541 tggcatctca gtttctgatt tagcataaga aaggagatac tcatggctca aattaaaatc
    12601 actttgacta agtctccaat cggtcgcaaa ccagaacaac gtaaaacagt tgttgcactt
    12661 ggacttggta aattgaactc ttcagttgtt aaagaagata acccagctat tcttggaatg
    12721 gtgaacgcta tctctcactt ggtaactgta gaagaagtta aataatctaa caaatagact
    12781 aagtcgcata gagaaatctt tgcgacttct agtccatttt acatatttac atacagcgag
    12841 tttgtggagg aagactcttg tacttcacag gcgctagcat ataaaagagg agaaataata
    12901 atgaaacttc atgaattaca acctgctaca ggttctcgta aagtccgcaa ccgtgtaggt
    12961 cgtggtacat catcaggtaa cggtaaaaca tctggccgtg gtcaaaaagg tcaaaaagct
    13021 cgtagcggtg gcggtgttcg cccaggtttt gaaggtggac aaactccatt gttccgtcgt
    13081 cttccaaaac gtggatttac aaatatcaac gctaaagagt acgcaatcgt taaccttgat
    13141 caattgaacg cttttgaaga tggtgcagaa gtaacaccag ttgtgcttat cgaagctgga
    13201 atcgttaaag ctgaaaaatc aggaattaaa attcttggta acggtgaatt gacgaagaaa
    13261 ttgacagtta aagctgctaa attctctaaa tcagctgaag aagcaatcac ttctaaaggt
    13321 ggctcagtag aagtcatcta agaggtggca gcctatgttt tttaaacttt taaaagatgc
    13381 cttaaaggta aaattggtac gtagtaaaat tctatttact atctttatcc tttttgtctt
    13441 ccgcgtagga acccacatta cagtaccagg agtaaacgca aagagtcttg aggccttgtc
    13501 aaaccttccg ttcttgaaca tgttgagttt ggtttcagga aatgctatgc gtaatttctc
    13561 agttttcgca ctaggtgtta gtccttatat tacagcttcc atcattgttc aacttttaca
    13621 aatggatatt ttacctaaat ttgttgaatg gggtaagcaa ggtgaagttg gtcgtcgtaa
    13681 actaaatcaa gcaacacgct acatttcttt ggtactggca tttgttcaat caattggtat
    13741 tacagcaggc tttaatgctt tgtccggtgc aaaattgacc aatatgccat taaattggca
    13801 aacatatttg ttgattggag caattttgac aacaggttcg attattgtaa cctggctggg
    13861 ggaacagatt tctgaaaagg gctatggtaa tggtacatca atgatcatct ttgcagggat
    13921 tatttcatcg ttaccaggaa cttttcacga gatttacatt gatcgctttg ttaatattga
    13981 atcaagtcgt ttgggggaat cagcaatctt tgttgctgca ctcgtcgtat taatattctt
    14041 tgttgtgtat tttacaactt ttgtacaaca agcagaatat aaattaccaa ttcaatatac
    14101 aaaacgtgca caaggagcac cttctagctc atatttaccg ctgaaattga atccagcagg
    14161 agttattccc gtaatctttg caggctcaat cactgcagtt ccaacttctt tgattcaata
    14221 tttcgcaagt caaaataaga gtgccgggtg gttattgacg gttcaggaat actttgatta
    14281 ttcaactgct aaaggtatga ttgtatatgc aggtttaatt attgccttta cattcttcta
    14341 cacctttgtt caagtaaatc ctgagaagac tgcagaaagc cttcagaaaa gtgcagccta
    14401 tatccatgga gttcgtcctg gtaatggcac tgaacagttt ttgtcaaaat tattgacaag
    14461 attggcagta atcggtgcac tcttcttgag ttttgtagct ttgctgccta tccttgcgca
    14521 aaatctcttt gggctttctt caagcattgc gttccttggt acaagtttga ttatcgtaat
    14581 ctctacaagt atcgaaggca tcaagcaatt agaaggctac cttcttaaga gaaaatatgt
    14641 aggtttctta gaaattacag aatagaatat aggttgacct agtcaacctt ctattttgtt
    14701 tttagataag tttgtcaata atggcaaatt tatgtgaaaa caaaataagg agtttgtcat
    14761 gaatctttta attatgggtt taccaggtgc tggtaaaggg acacaagcgg ccaagattgt
    14821 tgagaaattc aatgttgctc atatttcaac aggagatatg ttccgtgcag caatggccaa
    14881 tcagactgaa atgggtattc ttgccaagtc gtacattgat aagggtgacc tcgttcccga
    14941 tgaagttact aatggcattg tcaaagaacg tttggttcag gatgacatca aggaaaaagg
    15001 ctttttgctt gatggctatc ctcgtacgat tgaacaagcc catgccttgg atgaaaattt
    15061 ggctgactta ggaattgagt tgcaaggtgt tatcaatatt gagattgatc cttcaaaatt
    15121 ggtagagcgt ctcagcggtc gtattattca taaagaaact ggagagactt tccacaaagt
    15181 atttaatcca cctgttggag actacaaaga ggaagacttc tatcaacgtg aagatgacaa
    15241 gccagaatct gtcaaacgtc gtttagaggt caatatcgca caaggacagc caatcattga
    15301 tcattatcgt gcaaaagggc tggtccatga tattgaaggt gaccaagaca ttgaccttgt
    15361 tttccaagca attgatacag tactatcaaa attgcaataa actaatagat ttggcttgca
    15421 ttttttatac aaagatgata aaatagccta gtctgactta taattgttac ctctgtgttc
    15481 agaggacatc aaatcgatat ttagagaggg gttacttttg catggcaaaa gaagatgtga
    15541 ttgaaattga aggcaaagta gtcgatacaa tgccaaatgc tatgtttact gttgagttgg
    15601 agaatggaca ccaagtcctt gcaactgttt caggtaaaat ccgtaaaaac tacattcgta
    15661 ttttggtcgg tgaccgcgta actgttgagc ttagtccata cgacttgaca cgtggacgta
    15721 tcacataccg ctttaaatag tcgaaatact tggagggatt aaacatgaaa gtaagaccat
    15781 cggtcaaacc aatttgcgaa tactgcaaag ttattcgtcg taatggtcgt gttatggtga
    15841 tttgcccagc aaaccctaaa cacaagcaac gtcaaggtta agaaatagaa aggagaaaac
    15901 atggctcgta ttgctggagt tgacattcca aatgacaaac gtgtagttat ttcattaact
    15961 tatgtttatg gtatcggtct tgcaacatct aaaaaaattc ttgcagctgc aggtatttca
    16021 gaagatgtac gcgtgaaaga tttgacatca gatcaagaag atgctattcg tcgtgaagtt
    16081 gatgcaatca aagttgaagg tgacctccgt cgtgaagtta acttgaacat caaacgtttg
    16141 atggaaatcg gttcataccg tggtatccgt caccgtcgcg gacttcctgt ccgtggacaa
    16201 aacactaaaa acaatgcccg cactcgtaaa ggtaaagctg ttgcgattgc aggtaagaaa
    16261 aaataatata ggaggtagaa aaattggcta aaccaacacg taaacgtcgt gtgaaaaaga
    16321 atatcgaatc tggtattgct catattcacg ctacatttaa taacactatt gttatgatta
    16381 ctgatgtgca tggtaacgct attgcttggt catcagctgg tgctcttggt ttcaaaggtt
    16441 ctcgtaaatc tacaccattc gcggctcaaa tggcttcaga agctgctgct aaatctgcac
    16501 aagaacacgg tcttaaaaca gttgaagtta ccgttaaagg cccaggttca ggtcgtgagt
    16561 ctgctatccg cgctcttgct gccgctggtc ttgaagtaac agcaattcgt gatgtgactc
    16621 ctgtaccaca caatggtgct cgtcctccaa aacgtcgccg tgtataatca tacattccat
    16681 acacagcttt tcgtttaaga gggagtaaga aatgattgag tttgaaaaac caacaataac
    16741 aaaaattgat gaaaataaag attacggcag atttgtaatc gaaccattag aacgtggtta
    16801 cggtacaact cttggtaact ctcttcgtcg tgtacttctt gcctcacttc caggtgctgc
    16861 agtgacatcg attaaaattg atggtgtact ccacgaattc gacacagttc caggtgttcg
    16921 tgaagatgtt atgcaaatta ttcttaacat caaaggcatt gctgtaaaat cttatgtcga
    16981 agacgaaaag aaaattgaac ttgatgtagt aggtccagct gaagtaacag caggagacat
    17041 tcttacagat agtgacattg aaattgtaaa ccctgaccat tatctcttta ccattgctga
    17101 tggtgccact tttaaagctg ttttgactgt caattcaggt cgtggttatg taccagctga
    17161 ggataataag aaagatgatg caccagtggg aacacttgct gtagattcta tctatacgcc
    17221 agtgaagaaa gtcaattatc aagttgaacc agctcgtgtt ggtagcaacg atggttttga
    17281 caaattaaca cttgaaatca acacaaatgg caccattgtt ccagaagatg ctttaggtct
    17341 ttctgcacgt attttgatgg agcacttagg tctcttcact gacttgactg aagttgcaaa
    17401 atctgcagaa gtgatgaaag aagctgaagt ggcttcagat gatcgtatgc ttgatcgtac
    17461 gattgaagaa ttggatctat ctgttcgctc atataactgt ctgaaacgtg caggcattaa
    17521 cactgtattc gacttgacag agaaaactga gccagaaatg atgaaagtgc gcaatcttgg
    17581 tcgcaagagt cttgaagaag ttaaagttaa attggctgat cttggtctag gattgaaaaa
    17641 agataaataa tataggagga aatcatggca taccgtaaac taggacgcac tagctcacaa
    17701 cgtaaagcaa tgttgcgcga tttgacaact gaccttttga tcaacgaatc aatcgttaca
    17761 actgaagctc gtgctaaaga aatccgtaaa acagttgaaa aaatgatcac acttggtaaa
    17821 cgtggtgatt tgcacgcacg tcgtcaagca gcagcatttg ttcgtaacga aattgcatct
    17881 gaaaactatg atgaagcaac tgataagtac acttctacta cagcacttca aaaattgttc
    17941 tctgaaattg cacctcgtta tgcagaacgt aatggtggat atactcgtat cctcaaaact
    18001 gaaccacgtc gtggtgatgc tgcaccaatg gcaattatcg aacttgtata agatcatcaa
    18061 ttttgttgag tgttatgatg atggaatcct attctgattc ttagtctagc tctggtctac
    18121 cgctgagctt atctcagcgg taacactcat catgttgatt ggacgcttgt ttacgaaatt
    18181 actctaagat agaataattt cgtaagcagg cgttttttaa tagatgatac atatcagaaa
    18241 cagagcattt acaagaagaa cgaatcaata gttactcgtg gtgctagttc atttcaaaat
    18301 acaataaaaa gcccaaatgg actatactgt aagtgacgaa acatacagga ggttagtcca
    18361 aatgagccac ttacagtata ccgctaaatc tcatcatttg caatggaatg tacgccaatt
    18421 atcacaaatt tgtcatcact tctacaacaa ctattgcccg gattccttca aatatcggcg
    18481 aaatgttggc ttagttaaag tttcagatga atcaatcctt gtcttacttt tgttacaagc
    18541 tgaactaggt atgacatcac agcgccattt ctacaccatc tgccacctct tcccttgcgg
    18601 tcagttacta gaaagaagct gtttcaatcg tcggtcaaaa caattgattt ggctcgtcca
    18661 atcaatccga aaagctatga gtgaaatgct tccatctggt aaactagcca ttatagatag
    18721 ttttcctttg ccaacctgtt cgcaatcaca gagcaaccat ttttaaagga ttagccgata
    18781 ttggctacaa cgcctctaaa catctttggt tctacggctt caaagttcat atgctagtga
    18841 ctttatctgg ttatattttg aactatgttg tcacgccagc ctctgtccat gatatcaagg
    18901 tggtttatga gctattagag gggtgtaagc aatcggttat cttaggtgat ctaggctacc
    18961 taagcagtga gctcaaaaag gacttagagc aagaaggtta ccatctatgg acgccgtttc
    19021 gtaaaaacat gactgggtcc gaagaacata acaattggaa agtaatggcc atgagacgaa
    19081 ctgttgaaac acgtttttct gaactgtgtc gtctctttga catcgaacat acattagcta
    19141 gaagcctagc tggactacag ttacgaattg aacaaattat tctagctcat aacttacgct
    19201 attttgaaat gaactagcac cacgggtaat agttatttat cacaatctta gaactatacc
    19261 aaatcactcc cttctgaagc agaatgcaat gtttgccata gagtatcaat agcaaatata
    19321 cttaaaaaaa gaaaaatcaa ataaagtatg ctagacaaaa atgtcctgta gaaagacagc
    19381 acttttcgat aaacttaaac catcaacaaa aggagattaa gtaatggaat tcgaaaaagt
    19441 gtacgcaagc gtcaaaggta ttgtaaataa ggctcgaaaa gagttttaca ttaaactatg
    19501 ggatcgagat gattgggaac aagaaggaat gatgaccttg tttgaattgt tggaagctca
    19561 accgtggcta gttgatgaac aagttcaatt atattgttat tttaaagtca agttcagaaa
    19621 tcgaatcaag gatcgtatcc gcaaacagga aagtcaaaaa cgcaagtttg accgtatgcc
    19681 acatgaagat attcacgaat tatctcacgc aatacaatca ccgggattaa taaacgatga
    19741 actattaatg ctaagaggtg ccttgagaga ttatcgaaaa aatctgagta atgatcaact
    19801 tgataaatac gaaaaattaa ttagcggaca atgttttaat ggtcgccgtg aaatgatacg
    19861 tgatttacaa attcatttga aagactttcg ctaaagctag tcactaacat catgttaatc
    19921 gaattaagaa attgggcaga agcaccataa aaagttctgt tcagtttctt tttttatagg
    19981 ttatagcaaa gagaagaagg aataggggga aaaaaacaaa tttcaagtta aaattagcca
    20041 tcctatctta tgaagagtag gggtgtgact aaatgtgata ctcagccaat agtaacctaa
    20101 gtaattgaaa gactgattca gcggtattat ttagaattaa ccttatgctt tagtatctac
    20161 atagaacttt cagtgtaaaa aaatcccaaa aatcggttga caatgtatat aagtc
//
LOCUS       DASGBY010000024        19268 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.024, whole genome shotgun sequence.
ACCESSION   DASGBY010000024 DASGBY010000000
VERSION     DASGBY010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19268
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.024"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            231..701
                     /gene="rimP"
                     /locus_tag="U1396_000684"
     CDS             231..701
                     /gene="rimP"
                     /locus_tag="U1396_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEM5341891.1"
                     /translation="MSSIIELVTAAITPAIQTPYELVDVEYGKMGGDYVLSIFVDKEG
                     GISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIH
                     VKLYQAIDKIKVFEGTLLSFDGTDLIMEYMDKTRKKEVTIPYQTVAKARLAVKL"
     gene            774..1916
                     /gene="nusA"
                     /locus_tag="U1396_000685"
     CDS             774..1916
                     /gene="nusA"
                     /locus_tag="U1396_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEM5341892.1"
                     /translation="MSKEMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSES
                     AVIEFDEKKGDFHVFTVREVVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEF
                     GRVAAQSAKQTIMEKMRKQKRAITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQ
                     LSKQDQIPGEVFQSHDRIEVYVYKVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDG
                     TVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGSNIKKITSKFHPARYDAKNDR
                     MIPTEENIDVIEWVADEAEFIYNALAPAEVDQVLFDTEDGKHATVVVPDDKLSLAIGR
                     RGQNVRLAAHLTGFRIDIKSASEYEAFEATQYATDEVVEEVAEEQE"
     gene            1933..2229
                     /locus_tag="U1396_000686"
     CDS             1933..2229
                     /locus_tag="U1396_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEM5341893.1"
                     /translation="MAKARKIPLRKSVVSGEIIDKRDLLRIVKNKEGQVFIDPTGKAN
                     GRGAYIKLDNDEASQAKKRRVFDRSFSMEVAEEFYDELIAYVDHKIKRRELGLE"
     gene            2186..2524
                     /locus_tag="U1396_000687"
     CDS             2186..2524
                     /locus_tag="U1396_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ-related RNA-binding protein"
                     /protein_id="HEM5341894.1"
                     /translation="MLIIRSRGENLDSNKRQKILNLLGLAQRAGRLVSGEDLVVEAIQ
                     KGQAKLVFLAEDAAGNLSKKVTDKSHTYQVEVVTVFSTLELSAAVGKARKVLAVTDAG
                     FTKKMRSIME"
     gene            2542..5364
                     /gene="infB"
                     /locus_tag="U1396_000688"
     CDS             2542..5364
                     /gene="infB"
                     /locus_tag="U1396_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEM5341895.1"
                     /translation="MSKKRLNEIARELGVSSKEVVAKAQELGFEVKSHASSVDEASAK
                     RLAESFGGQKSEATKVAAKVSKPEKVDETPKVETAKVEKAKETQPVVKEEVAASAVQS
                     VPHRPQSRNFKAEREARAKEQAAKRAQGQGKGGQAKSGQDRRDNRQQGQGRSNNERND
                     RRDNRRDQRPEERKDNRFGERRDNRANRRQDNRSGRSARFEQREAAKPAGPKIDFKAR
                     AAALKAEQNAEYARTSEERFRQAQEAKKQPKKPKEIKFEEPVVESKPFVKPAPVASVP
                     EQVAETTVDTRRKKQARPDKKRYFNSDEEDGPRKQQRNRNSQNQVRNQRTSNWNNNKK
                     NKKGKANQPAKPVTERKFHELPTEFEYTAGMTVAEIAKRIKREPAEIVKKLFLMGVMA
                     TQNQSLDGDTIELLMVDYGIEAKEKVEVDNADIERFFVEEGYLNEEEMTERPPVVTIM
                     GHVDHGKTTLLDTLRNSRVATGEAGGITQHIGAYQIEEAGKKITFLDTPGHAAFTSMR
                     ARGASVTDLTILVVAADDGVMPQTIEAINHSKAANVPIIVAINKIDKPGANPERVIGE
                     LAEHGVISTAWGGESEFVEISAKFNQNIDELLETVLLVAEIQELKADPTVRAIGTVIE
                     AHLDKGKGAVATLLVQQGTLNVQDPIVVGNTFGRVRAMTNDLGRRVKTAGPSTPISIT
                     GLNEAPMAGDHFAVYEDEKSARAAGEERAKRALLKQRQATQRVSLENLFDTLKAGEVK
                     SVNVIIKADVQGSVEALASSLQKIEVEGVRVNIVHSAVGAINESDITLAEASNALVIG
                     FNVRPTAEARSQAEADDVEVRLHSIIYKVIEEMEDAMKGMLDPEYEEKIIGEAIIRET
                     FKVSKVGTIGGFMVVRGKVTRDSSVRVIRDGVVVFDGKLVSLKRYKDDVKEVGNAQEG
                     GLMIENYNDLKVDDTIEAYIMEEIKK"
     gene            5520..5873
                     /gene="rbfA"
                     /locus_tag="U1396_000689"
     CDS             5520..5873
                     /gene="rbfA"
                     /locus_tag="U1396_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEM5341896.1"
                     /translation="MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMVGD
                     LSMAKVYYTIMSNLASDNQKAQTGLEKATGTIKRELGRKLTLYKIPDLVFEKDQSIEY
                     GNKIDQMLRALDQKD"
     gene            6155..6826
                     /locus_tag="U1396_000690"
     CDS             6155..6826
                     /locus_tag="U1396_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin lysis protein"
                     /protein_id="HEM5341897.1"
                     /translation="MKTFISKLMLVSTVVLLAACQSNQVKGGESSSSSASSQVSDGSS
                     LQQASTIASSSETQASSVTTPELSEVYQSVIDRYQANMGQSAEAINQDEVSSYLSLLT
                     SQGQEYSGIFYSLYDVNHDGTEELLLALDKSGEYVLIDLYTQLADESLRLVDNFRNLG
                     FEIGPNALLRPLQDGTYLFEGDGIFRIYQYNAMIPGLKRISESDTNPETSPLLELKSL
                     HWVKL"
     gene            6991..8145
                     /locus_tag="U1396_000691"
     CDS             6991..8145
                     /locus_tag="U1396_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding domain-containing protein"
                     /protein_id="HEM5341898.1"
                     /translation="MKTNLKKLLYSGVTLMSLVVLAACSSTSSSTTTSSSAATSQTSV
                     ATISNNSTSSDSSSSTIDWSALPTTEVTLSNDGLKITEGGTYILTGSTTAGVTVETDA
                     NVRIILAGAEISSSDTAAINVINADNVELEIKDGTTNTVKDTSNHTDTNIEGAIHVEA
                     DLTITGNGSLTVEGNFQDGIVSTDDLIVNSGNITVTAVDDGIRGKDSLTINGGTINVI
                     AGGDGIKSTNDTDTTKGYTTITGGEITVKAGDDGIKAETALTIDGGTITVSESAEALE
                     GTNITINGGTLDVYGSDDAINAASTTSSEIFIKVTGGDLKVAVGSGDTDAFDANGDIY
                     ISGGTIDVTAQSAFDFDGTAELTGGTVTVNGEQITQITATGPGAGGHGGW"
     gene            complement(8181..8840)
                     /locus_tag="U1396_000692"
     CDS             complement(8181..8840)
                     /locus_tag="U1396_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEM5341899.1"
                     /translation="MEFDLFLMICNYIGTIAFAVSGTVKGFKKKLDIFGISLLGIITA
                     VGGGIIRDTMANRIPAALTDPTAIYLSLGVAISMYLIVINLKQDKPLDKKMIHFLSQT
                     NLIFDAIGLAIFALIGASTGISLQLNALTSGILAALTGVGGGIARDLLVNETPIVLKE
                     DVYAVLAFFSGVLYHLCVVNWKLPQIPTFITIFTISLIIRLLVIKYKINLPNMESKRK
                     V"
     gene            9073..10041
                     /locus_tag="U1396_000693"
     CDS             9073..10041
                     /locus_tag="U1396_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000258167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEM5341900.1"
                     /translation="MVSITKKQHLDMFLKMQQIRDVDMKLNKLVRRGFVQGMTHFSVG
                     EEAAAVGPIAGLTDEDIIFSHHRGHGHVIAKGIDINGMMAELAGKATGTSKGRGGSMH
                     LANVEKGNFGSNGIVGGGYALAVGAALTQQYLGTDNIVIAFSGDSATNEGSFHESMNL
                     AAVWNLPVIFFITNNRYGISTDISYSTKIPHLYQRAAAYGIPGHYVEDGNDVIAVYEK
                     MQEVIEYVRAGNGPAMVEVESYRWFGHSTADAGVYRTKEEVNEWKAKDPLKKYRKYLT
                     ENKIATDEELDAIEAQVAEQVEASVKFAQESPDPDISVAYEDVFVD"
     gene            10332..11327
                     /locus_tag="U1396_000694"
     CDS             10332..11327
                     /locus_tag="U1396_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000005088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM5341901.1"
                     /translation="MAETKVMALREAINLAQSEEMRKDEKVFLMGEDVGIYGGDFGTS
                     VGMLDEFGPKRVRDTPISEAAIAGSAVGAAQTGLRPIVDLTFMDFVTIALDAIVNQAA
                     KTNYMFGGGLKTPVTFRVASGSGIGSAAQHSQSLEAWLTHIPGIKVVAPGTANDAKGL
                     LKSSILDNNPVIFLEPKALYGKKEEVNLDSDFYIPLGKGEIKREGTDVTIISYGRMLE
                     RALKAAEEVAAEGISVEVVDPRTLIPLDKELIIESVKKTGKVILVNDAYKTGGFIGEI
                     ASIITESEAFDYLDAPIIRIASDDVPVPYANILENAVLPNVEKIKAAIYKQVNKG"
     gene            11668..13056
                     /locus_tag="U1396_000695"
     CDS             11668..13056
                     /locus_tag="U1396_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase"
                     /protein_id="HEM5341902.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYIGAEGETVEAGASSAPAVEPAAAIEEV
                     PAGRTPVIVAPATAAKPQGSGKVRATPAARKLARELGIDLGLVPGTGANGRVHKVDVE
                     DFKGAAPKATPLAARIAADQGVDLSTLTGSGVNGKIVKNDVLAVLAPVAVETAAPVPK
                     AEEKPAKELPEGVEIIKMSPMRKAISKGMVNSYLTAPTFTLNYDIDMTNLMALRKQVL
                     EPIMNKTGLKVTFTDLIGLAVVRTLMKEEHRYMNASLINDAQEIELHKFVNLGIAVGL
                     DDGLVVPVVHGADKMSLSDFVVASKDVIKKAQSGKLKGAEMSGSTFSITNLGMFGTKT
                     FNPIINQPNSAILGVASTVQTPVVIDGEIKIRPIMALCLTIDHRIIDGMNGAKFMVDL
                     KNLLENPLELLI"
     gene            13330..15090
                     /gene="lpdA"
                     /locus_tag="U1396_000696"
     CDS             13330..15090
                     /gene="lpdA"
                     /locus_tag="U1396_000696"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002984864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM5341903.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYLGAEGESVEVGSAPAPAEVAQATADLK
                     AAGLEVPAAPAAAPQAPKAELAADEYDMVVVGGGPAGYYAAIRGAQLGGKIAIVEKSE
                     FGGTCLNKGCIPTKTYLKNAEILDGLKIAAERGINLASTNYTVDMDKTVDFKNKVVKT
                     LTGGVQGLLKANKVTIFNGLGQVNPDKTVVIGDKVIKGRSIILATGSKVSRINIPGID
                     SKLVLTSDDILDLREIPKSLTVMGGGVVGVELGLVYASYGTEVTVVEMADRIIPGMDR
                     EVSVELQKVLSKKGMKFLTSVGVSEIVEANNQLTIKLNDGSEIISEKALLSIGRVPQL
                     AGLENLHLELDRGRIKVNAYQETSIPGIYAPGDVNGTKMLAHAAYRMGEVAAENAIHG
                     NHHKAKLDFTPAAVYTHPEIAMVGLTEDQAIEKYGKENILIGRNSFTGNGRAIASNEA
                     HGFVKVIAEKKYHEILGVHIIGPVAAEMINEAATIMESELTVDDVAASIHGHPTFSEV
                     MYEAFLDVLGVAIHNPPKRK"
     gene            15230..16075
                     /locus_tag="U1396_000697"
     CDS             15230..16075
                     /locus_tag="U1396_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5341904.1"
                     /translation="MRKIIFLDVDGTLVDYHNRIPESAIRAIRQARENGHLVYVCTGR
                     SRAEMQPELWEIGLDGMIGGNGSYVEHQDQVIMHQLLSEEDSRAIVDWLHERGLEFYL
                     ESNNGLFASENFRERARETLRIYSMNKGKTAEEVADQEVEDVIHGMIFDGQLYRNDLN
                     KVSFVLDSYQDHLDSKQAFPQLVANTWGGRGESALFGDLGVKDIDKAHVISVLLDYLG
                     ASQADTIAFGDAKIDISMLDYCAVGVAMGNGGAEILAMADMITDDVEEDGLYNAFERL
                     GLLDK"
     gene            16254..17052
                     /locus_tag="U1396_000698"
                     /pseudo
     CDS             16254..17052
                     /locus_tag="U1396_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303877.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
     gene            17252..19162
                     /locus_tag="U1396_000699"
     CDS             17252..19162
                     /locus_tag="U1396_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5341905.1"
                     /translation="MAKDYTDLATDIVAHVGGKENISSLKHCVTRLRFGLKDESKADT
                     DYLKARDGVVTVVQAGGQYQVVIGNHVPDVYVAVQKVAGISGDGALDIDEGDGPKGNL
                     FDRFVDLVSGVFQPSLGVLAAAGIIKGLVSILAATMGLNNDNSALYAILNTAGDGFFQ
                     FLPIVLAFNAARKFRMNEFTGMAIAMALVYPTLPGTFATLKEAGLNNVFGIPFVLPAA
                     GSYLQTVMPVLLAVWIASHIEKFMKKITLDVVKVFIVPFVTILISVPLTFLVVGPVAN
                     YASDLLSAGFTAVMGFSPLLYGILLGALWQVMVMFGLHWALVPLAILQFSQNGWSNIL
                     LAAALPNFTQTGVLLAIMMKTKESKVKSVAMPAFISSIFGVTEPAIYGVTLPMKTPFY
                     ISCAVSAVIGAGLSFFDLKNYAMGALGIFMYPGYVSPELGVTPMWIMMGFSLAAIVAS
                     FAIQMALPVPYLYGEPTEKKSVEETKESVPELKEIKQEIIASPLIGKVVKLEDVPDAV
                     FASGAMGKGIAIDPLDGILVSPAKAEITLVFPTKHAIGLRTENGAELLIHIGMDTVSL
                     AGKGFESFVQVGDQVEAGQKLLEFDLHQIKAADLPVITPIIVTNTADYEDILVTQESQ
                     INSGDYLLTTVK"
BASE COUNT         5929 a         3612 c         4494 g         5233 t
ORIGIN      
        1 ctaacagaga cctttttcct ttacaaatag ggatagatat gatagaataa tggaagtgaa
       61 taatgagaaa aggggttggc gtcagtcaac cctttccctg tacacggatt tctgtatata
      121 gaatgaatga tagtacaagg gagtttactg tcaaaggaaa tagagagtcc tggatagtgc
      181 gaactatttg agtaatgtat ttctagcgac tgtaaaaata ggaggtgttt atgtcatcaa
      241 ttattgaatt ggtcacagca gcaattaccc ccgctattca aactccttac gagttggtag
      301 atgtggaata tggtaaaatg ggcggtgact atgtcctatc gatttttgtc gataaggagg
      361 gtggaatttc ccttcaagat acggcagatt tatccgaaaa gatcagtccg attttggaca
      421 ctatcaaacc agacccattt ccagaccaat acatgctgga ggtaacaagt ccaggtttgg
      481 aacgtccttt aaaaacggca gatgctgttg agaaggcggt tggaaagtac atccatgtca
      541 agctctatca ggcaattgat aaaatcaagg tttttgaagg aacgttgctc tcctttgatg
      601 gaacagacct gattatggag tatatggata aaactcgtaa gaaggaagtg actattcctt
      661 accagacggt ggctaaggcc cgtttggctg ttaagttata atgctctttc atgagtattt
      721 taaaagatat tagactttaa gaaaggacct tttgagcgca aaaggaaaac aacatgagta
      781 aagaaatgct agaagccttc cgtattttag aggaagacat gggtattaac aaagcggata
      841 tcattgatgc agttacagag tcgcttcgtt cagcttataa acgccgttat ggtcaatcag
      901 aatcagcagt gattgaattt gacgagaaaa aaggcgattt ccatgtattt actgttcgtg
      961 aagtagtaga tgaagtattt gatagccgac tagaaattag tctaaaagat gccttggcta
     1021 tttcatcagc ttatgaaatg ggtgacaaaa ttaaattcca agaagaccca gcggaatttg
     1081 gacgtgtagc tgctcaatca gctaaacaga ccatcatgga aaagatgcgc aaacaaaagc
     1141 gtgccattac cttcaatacc tacaagcaac atgaaaatga gattatgtca ggtacggtag
     1201 agcgttttga taatcgcttt atctatgtca accttggtac gattgaagca caattgtcaa
     1261 aacaagacca aattcctggt gaggttttcc aatctcatga tcgcatcgaa gtctatgtct
     1321 acaaggtaga agacaatggt cgtggtgtta acgtatttgt cagccgtagc catccagaaa
     1381 tgatcaaacg tcttatggaa caggaaattc cagaagtata cgatggaaca gttgaaatca
     1441 tgagtgttgc ccgtgaagct ggagatcgta cgaaagtggc tgttcgtagc cataatccaa
     1501 acgtagatgc catcggtacg atcgttggtc gtggtggttc aaatatcaag aaaatcacca
     1561 gcaagttcca cccagctcgt tatgatgcta agaatgaccg tatgattcct actgaggaaa
     1621 atattgacgt tatcgagtgg gtagcagatg aagcggaatt tatctacaat gctctcgctc
     1681 ctgccgaagt tgaccaagta ttgtttgaca cggaagatgg aaaacatgct acagtcgttg
     1741 taccagatga taaattgtca ttggcaattg gtcgtcgcgg tcaaaacgtt cgtttggcag
     1801 cacatttgac aggattccgt atcgacatca agtcagcatc ggagtatgaa gcttttgaag
     1861 caactcaata tgcaacagac gaagttgtag aagaagtcgc agaagaacaa gaataaggca
     1921 aaaggagcaa ccatggcaaa agctagaaaa atacccttgc gcaagtctgt ggtgtccggt
     1981 gaaatcatcg acaaacggga tttgctccgt attgtaaaaa ataaagaagg tcaagtattt
     2041 atcgatccaa caggcaaggc aaatggtcgt ggagcttata tcaagcttga caatgatgag
     2101 gcaagccaag ctaagaaacg tcgtgtcttc gatcgttcct ttagtatgga agtggccgaa
     2161 gaattttacg atgaattaat tgcctatgtt gatcataaga tcaagaggag agaacttgga
     2221 ctcgaataag agacagaaaa tcttaaattt attaggtttg gcccagcgag ctggtcgcct
     2281 ggtttcgggt gaggacctgg ttgttgaagc tattcaaaaa gggcaggcaa agttggtgtt
     2341 tttagccgaa gatgctgctg gaaatttaag taaaaaagta acagataaaa gtcataccta
     2401 tcaagtagaa gttgtaacag tgttttcaac actggaattg agtgcagctg tcggcaaggc
     2461 tagaaaagtt cttgcagtga cagacgctgg atttacaaag aagatgaggt ctattatgga
     2521 atagaacagg aggacaaggc attgtctaag aagagattga atgaaatagc ccgtgaatta
     2581 ggcgtaagca gtaaggaagt tgttgctaag gctcaagaat tgggttttga agtcaaaagt
     2641 catgcttcaa gcgtagatga agcaagtgct aaacgccttg cagaaagctt tggaggacaa
     2701 aaatcagagg caactaaagt tgcggcaaaa gttagcaagc ctgagaaggt tgatgaaact
     2761 ccaaaagtgg aaacagctaa ggtagaaaaa gctaaggaaa cacagccagt agtaaaagaa
     2821 gaagttgcgg caagcgcagt acaatcagtt ccacatcgtc cacagagtcg aaactttaag
     2881 gcagagcgtg aagcacgggc caaagagcag gctgctaagc gagctcaggg tcaaggaaaa
     2941 ggtggtcaag ctaaatctgg tcaggaccgt cgtgacaacc gtcaacaagg tcagggacgt
     3001 tcaaacaatg agcgaaatga tcgccgcgac aatcgtcgtg accagcgtcc agaagagcgg
     3061 aaagacaacc gatttggtga acgccgcgat aatcgtgcca accgtcgtca ggacaatcgt
     3121 tcaggtcggt cagctcgctt tgaacaaaga gaggctgcaa aaccagcagg acctaaaatt
     3181 gacttcaaag cgcgtgctgc tgctttgaaa gcagaacaaa atgcggagta tgctcgtacc
     3241 agtgaagaac gttttcgtca ggctcaggaa gctaaaaagc aacctaagaa gccaaaagaa
     3301 attaagtttg aagaaccggt tgtggaaagc aaaccatttg tgaagcctgc acctgttgca
     3361 tcagtaccag agcaagttgc agaaactact gtagataccc gtcgtaagaa acaagctcga
     3421 ccagataaaa aacgttactt taatagtgac gaagaagatg gtccacggaa acaacaaaga
     3481 aatcgaaata gtcaaaatca agtgagaaat caaagaacaa gtaactggaa taacaacaag
     3541 aaaaataaaa aaggcaaggc taaccaacct gccaaacctg tcacagaacg caagttccac
     3601 gaattgccaa ctgaatttga atacactgct ggcatgaccg tcgcagaaat tgcaaaacga
     3661 atcaaacgtg aacctgctga aattgtgaaa aaactcttcc ttatgggagt tatggcgact
     3721 caaaaccaat ctttggatgg agatactatc gaactcctca tggttgatta tggtattgaa
     3781 gcgaaagaaa aggtagaggt cgataacgca gatattgagc gtttcttcgt agaagagggc
     3841 tacctcaatg aagaagagat gacagaacgc ccacctgttg tgactatcat gggacacgtt
     3901 gaccatggta aaacaacctt gttggatacc ctacgtaatt ctcgtgttgc tactggggaa
     3961 gctggaggta tcacacagca tatcggtgcc taccaaattg aggaagctgg taagaaaatt
     4021 accttcttgg atactccagg acacgcggcc tttacttcta tgcgtgcacg tggtgcatct
     4081 gttaccgact tgaccatcct agtcgttgct gcagatgatg gtgtcatgcc acaaacgatt
     4141 gaggctatca accactcaaa agcagctaat gtaccaatca ttgtagctat caacaagatt
     4201 gacaagccag gtgcaaaccc agagcgtgtc atcggtgaat tggctgagca cggtgttatc
     4261 tcaaccgctt ggggtggaga atctgaattt gtagaaatct cagctaagtt taaccaaaac
     4321 attgatgaat tgttggaaac tgttcttttg gttgctgaaa tccaagaact gaaggcagac
     4381 ccaactgttc gtgcgattgg tacagttatc gaagcgcatt tggataaagg gaaaggtgcg
     4441 gttgcaaccc tcctcgttca acaagggaca cttaatgttc aagacccaat cgttgtcgga
     4501 aataccttcg gacgtgttcg tgccatgaca aacgaccttg gtcgtcgtgt taaaactgct
     4561 ggtccatcta caccgatatc tattactggt ttgaacgaag cgcctatggc aggcgatcat
     4621 tttgcagttt acgaggatga gaaatcagcc cgtgcagcag gtgaagaacg tgctaaacgt
     4681 gctcttctta aacagcgtca agcaacgcaa cgagttagtc ttgaaaacct ctttgatacc
     4741 cttaaagcag gtgaggttaa gtcagttaat gtgattatca aggccgacgt acaaggttca
     4801 gttgaagctc ttgcatcatc gcttcaaaag attgaagtag agggagtacg tgtcaatatc
     4861 gtccactctg cagttggtgc tatcaatgaa tcagatatta ctcttgcgga agcttcaaat
     4921 gctcttgtga ttggtttcaa cgttcgtcca acagctgaag cgcgtagcca agctgaagca
     4981 gatgatgttg aagtacgtct tcacagcatc atttacaagg ttatcgaaga gatggaagat
     5041 gccatgaaag gtatgcttga tccagaatat gaagaaaaaa tcattggtga ggcaatcatt
     5101 cgtgaaacct tcaaggtatc caaagttgga acgatcggtg gtttcatggt cgtacgtggt
     5161 aaggttaccc gtgattcaag tgttcgagtt atccgtgatg gtgttgtagt atttgatggt
     5221 aaactagtta gtttgaaacg ctataaagat gacgtgaaag aagttggtaa tgcccaagag
     5281 ggtggtttga tgattgaaaa ctacaacgac ttgaaagttg atgataccat tgaagcttac
     5341 atcatggaag aaatcaaaaa ataatatttt ctcattgtca aaatcataga caagtgattt
     5401 tgtcgaggaa gtgacaattt aatagatttt agtagatttt aaagcaatag tttttaatct
     5461 acttggatta ttcaagctgg ggaaactcag cttttctatc atctaagaaa ggaaagaata
     5521 tggcgaatca ttttcgtaca gaccgtgtcg ggatggaaat caagcgcgaa gtcaatgaga
     5581 ttttgcaaaa gaaagttcgt gatccacgtg tgcagggagt gaccattaca gatgttcaga
     5641 tggttggcga tttgtcaatg gccaaggttt actacacaat catgagtaat ttggcatccg
     5701 ataatcaaaa agcacaaacg ggtcttgaaa aagcgacggg aaccattaag agagaacttg
     5761 gtcgtaagtt aactctttat aaaattccgg atttggtctt tgaaaaagac caatcaattg
     5821 agtacggcaa taaaattgac caaatgttgc gtgctcttga tcagaaagat taacaacaaa
     5881 agtcggatgg aaacattcgg ctttttctgg ctcggatgct ttgtccatat atggtggcgt
     5941 ttacaagccc tcggaaagat gttatactaa tactcaatga aaatcaaaag tagactagga
     6001 aacgaagtcg aagatagaac tctgtcacta tcttatttca aggtaacagg ctgaaaacct
     6061 ccactggagc ttttcactca tcaaggcaag ttgacaacgg ataattttga ttttcgaaga
     6121 gtataagacc aaagatagag cacaggagga agttatgaaa acatttatta gtaaactgat
     6181 gttagtgtcc acggttgtac tattagctgc ttgtcagtct aatcaggtaa aaggtggtga
     6241 gagttctagt tctagtgctt caagccaagt ttcagatggt tctagtttgc agcaagcatc
     6301 aacaatagca tctagctctg agacgcaagc atcctcagtg accactcctg agctaagtga
     6361 agtataccaa tcagttattg atcgttatca agcgaatatg gggcagtctg ctgaggcaat
     6421 taatcaggat gaggtcagta gctatctgag cttattaact agccaggggc aagaatacag
     6481 tggaatattt tatagtttgt atgatgtcaa ccatgatggt acagaggagc tgcttctagc
     6541 tttggacaag tcgggagaat atgtcttaat tgatctctat actcagcttg ccgatgagag
     6601 tctacgtttg gtggataatt tccgcaatct tggatttgaa attggaccga acgccctact
     6661 tcgtccttta caggatggaa catacttatt tgaaggagat ggtatttttc gcatttatca
     6721 atacaatgcg atgattccag gtttaaaacg gatttctgaa tcagatacca atcctgaaac
     6781 ttctcccttg cttgagttga aaagcttgca ttgggttaag ctatagattt tatcaatgat
     6841 tattcctagg ctgggtttcc cagccttttg tagtttctaa gaactttaag ttttcttttg
     6901 gtaatcttta atctttcttt taggaaggaa aggtaaacta ggagcatatc aggaagggat
     6961 acgacttcct aaagaaaagg aatctacatt atgaaaacaa atcttaaaaa attactttac
     7021 tctggtgtta ctcttatgag ccttgtggtc ttagcagcat gttcatctac ttcaagttca
     7081 acgactactt caagctcagc agcaactagt cagacaagtg tagcgacaat ctcaaataat
     7141 agcacttcat cagattcaag ctcgtcaact attgactggt cagcccttcc aacgacagaa
     7201 gtgacgcttt caaatgatgg cttgaaaatt actgagggtg gaacctatat tttgactggt
     7261 tcaacaacag ctggtgtaac ggttgaaaca gatgccaatg ttcgcatcat tctagcaggt
     7321 gctgagattt caagttcaga tactgcagca atcaatgtta ttaatgctga caatgttgaa
     7381 ttggaaatca aagatggtac gacgaataca gtgaaagata ccagcaatca tacagacacc
     7441 aatattgaag gggctatcca tgttgaagct gatttgacca ttacaggaaa tggtagcctg
     7501 accgttgaag gcaacttcca agacggcatc gtatcgacag atgaccttat cgtgaattca
     7561 ggaaacatta ccgtcactgc agtggatgat ggtatccgtg gtaaggattc attgacaatc
     7621 aatggtggta caatcaatgt catagcaggt ggtgatggta tcaagtctac aaatgataca
     7681 gatactacca aaggttatac aactatcaca ggtggtgaaa ttactgtaaa agcaggtgat
     7741 gatggtatta aagcggagac ggctttgaca attgacggag gtaccattac agtatcagaa
     7801 tcagcagaag ctcttgaagg aacgaatata accatcaatg gtggtacatt agatgtttac
     7861 ggttcagatg atgctattaa tgcggcaagt acaacgtcat cagaaatctt catcaaggta
     7921 actggcggtg acttgaaagt agctgtaggt agtggagata cggatgcctt tgatgctaat
     7981 ggagacattt atatatctgg tggtacaatc gatgtaacag ctcaatctgc ttttgacttc
     8041 gacggaactg ctgaattgac aggaggtact gtgacagtta atggtgagca gattactcaa
     8101 atcacagcaa caggaccagg tgctggtggc cacggtggct ggtaatcaat aataatacaa
     8161 aaaggtctga gttgacgaac tcagaccttt cgtttgcttt ccatattggg aagattgatt
     8221 ttgtatttaa ttaccaatag tcgaatgatt aaagaaatgg taaaaatagt gatgaaggtc
     8281 ggaatttgtg gtaatttcca atttacaacg caaagatgat agaggactcc tgagaaaaat
     8341 gcaaggacag catagacatc ttctttaaga acaatgggtg tttcattgac gagtaaatca
     8401 cgggcgattc cgcctccgac acctgtcaaa gctgccagaa taccactggt tagagcgttt
     8461 agctggagag agatgccagt actggctcca atgagggcga agatggctag accgattgca
     8521 tcaaagataa ggtttgtctg ggaaaggaaa tgaatcatct tcttatcaag tggtttgtcc
     8581 tgctttagat tgataacaat caagtacatg ctaatcgcta ctccgagaga taaatagatg
     8641 gctgtaggat cagtcaaggc ggcaggaatg cgattggcca tcgtatctcg aataattccc
     8701 ccaccaacgg cggtaatgat accgagcaag ctaattccaa aaatatctaa ctttttctta
     8761 aatcctttta cggtccccga aacagcaaat gcgatagtgc ctatgtagtt acaaatcata
     8821 agaaataaat cgaattccat aagaacctcc gtacctatat taacagaaag aaagacggcg
     8881 tgcaagctta tttcaaagtt tgtgaaaaaa gtttcaaaca agtaaagtga atcttttgag
     8941 gatttgtgaa aaaacgcact aaatcaaggt tttcacgaaa atttctgtaa aaagaaaacg
     9001 gttcaattac ttgccatttg tgaaatattg gtctatcata gtacagaaag agaaaaacct
     9061 ttggaggaaa ttatggtatc tatcacaaaa aaacaacatt tggacatgtt cttgaaaatg
     9121 caacaaatcc gtgatgttga tatgaaatta aacaaattag tgcgtcgcgg tttcgtacaa
     9181 ggtatgactc acttctcagt cggtgaagaa gctgcggctg ttggccctat tgctggattg
     9241 acagatgagg acatcatctt ctcacaccac cgtggtcacg gtcacgttat tgcaaaaggt
     9301 attgacatca acggtatgat ggctgagctt gctggtaagg caacaggtac atctaaaggc
     9361 cgtggtggtt ctatgcactt ggctaacgtt gaaaaaggaa actttggttc aaacggtatc
     9421 gtaggtggtg gttatgccct tgcggtgggt gcggccctta cgcaacaata cctcggtaca
     9481 gataacattg ttattgcctt ctcaggtgat tcggctacta acgaaggttc cttccacgaa
     9541 tcaatgaact tggcagctgt ttggaacttg ccagttatct tcttcattac aaacaaccgt
     9601 tacggtattt caactgatat ttcttattct actaagattc ctcacctcta ccaacgtgct
     9661 gctgcatacg gtattccagg tcattatgtt gaggatggta acgacgttat tgccgtttat
     9721 gaaaaaatgc aagaagtcat cgagtacgtt cgtgcaggaa atggtcctgc catggtcgaa
     9781 gttgaatcgt accgctggtt tggtcactca actgccgatg caggtgttta ccgtactaaa
     9841 gaagaagtca atgagtggaa agcaaaagac ccacttaaga aataccgcaa atacttgaca
     9901 gagaacaaga ttgcgactga cgaagaattg gatgccatcg aagcacaagt tgcagaacaa
     9961 gtagaagcat ctgtgaaatt cgcacaagaa agcccagatc cagacatctc agtagcttat
    10021 gaggatgtgt ttgtagacta agtaacgaga acgttaaaag gacacagcga aaataagcgg
    10081 taagtccgaa atctttgatt tcgtagacgc accctcgtca agacaactag tattttcaca
    10141 ggtgaaaccg aagaaagtac agttgtctac gacgcagtaa ctgcaatagt taaacatgaa
    10201 attcgcacag tccttagttc gagtacaatt ctaaggtgtc ttaagctggg acaataaaca
    10261 attacatcgt agtaattgtt tggttttcct tagttcagta tagataaatt gatataaatt
    10321 aggagtaaaa aatggctgaa acaaaagtaa tggccttgcg tgaagcgatt aacttggctc
    10381 aaagcgaaga aatgcgtaag gatgaaaaag tattcttgat gggggaagac gtcggtatct
    10441 acggcggtga cttcgggaca tctgttggta tgttggacga atttggtcca aaacgcgttc
    10501 gcgacacgcc tatctctgag gctgcaatcg ctggttctgc ggttggtgcg gctcaaacgg
    10561 gtcttcgtcc aattgttgac ttgactttca tggacttcgt aacgattgcc cttgatgcga
    10621 ttgttaacca ggctgccaaa accaactata tgtttggtgg tggcttgaag acacctgtaa
    10681 ccttccgtgt agcatcgggt tctggtatcg gttctgctgc ccagcactca caatctcttg
    10741 aagcttggtt gactcacatc ccaggtatca aggttgtcgc acctggtaca gctaacgatg
    10801 caaaaggtct tttgaaatca tctatccttg ataacaaccc agttatcttc ttggagccaa
    10861 aagcacttta tggtaaaaaa gaagaagtca acttggactc agatttctac attccacttg
    10921 gtaagggtga aatcaaacgt gaaggtactg atgtaaccat tatttcatac ggtcgtatgt
    10981 tggaacgtgc cttgaaagct gctgaagaag tggctgctga aggtatcagc gtagaagtgg
    11041 ttgacccacg tacccttatc ccattggata aagaattgat catcgaatct gtgaagaaaa
    11101 ctggtaaggt tatcttggtc aacgatgctt acaaaacagg tggtttcatc ggtgaaatcg
    11161 catcgatcat cacagaaagc gaagcctttg actatttgga tgcaccaatc atccgtatcg
    11221 cttctgacga tgtaccagtt ccttacgcaa acattcttga aaacgcagta ttgccaaacg
    11281 tagagaaaat caaagcggca atttataagc aagtaaacaa gggttaatct tattgtcatc
    11341 cgcttatctt ttctggctgt gttgatttgg cttgcctaac gtaagttatg cctgcaccaa
    11401 atcgccttgt cagaaaagca atcggaaaga cgataaccct aatatgctag aaataaaatg
    11461 ttctagcatg actaagaatg cttggaaaag aattgagccg cttcgattat cgaagtctgg
    11521 tttggttctt gacaaggtaa gaaactgaaa gaaaggaatt gaacccgtcc ggaaaactcg
    11581 gaaaaaagat aaatcgttac gaaaatcagg attttcgacg atttcctatt tttcattcgt
    11641 tttctgttcg gacttggtat cttaataatg gctattgaaa tcattatgcc taagctcggt
    11701 gtggacatgc aagaaggtga aatcatcgag tggaaaaaac aagagggcga ttttgtcaac
    11761 gaaggcgacg tcatcttgga aatgatgtct gacaagacca gcatggagct ggaagcagaa
    11821 gagtcaggcg tcctattgaa aattgttcac ggaaacggtg ctaccgttcc tgtaacagaa
    11881 gttattgcct acatcggtgc tgaaggtgaa acggttgaag ccggcgcttc atctgctcct
    11941 gctgttgaac cagcagcggc tattgaagaa gtacctgcgg gtcgtacacc agtaatcgtt
    12001 gctcctgcaa ctgctgccaa accacaaggt agtggcaagg tgcgtgcaac gccagctgcg
    12061 cgtaaattgg cgcgtgagct tggaatcgac ttgggtcttg ttccaggaac aggtgctaac
    12121 ggtcgtgtcc acaaggttga cgtcgaagac ttcaagggag cagctccaaa agcaactccg
    12181 cttgcagccc gtattgcagc agaccaaggt gttgacttgt caacccttac aggttcaggt
    12241 gtcaacggta agattgtcaa gaacgacgtt cttgcagtac ttgctcctgt agctgtagaa
    12301 actgctgctc cagtaccaaa agcagaagaa aaaccagcta aagaattgcc agaaggcgtt
    12361 gaaatcatca agatgagccc aatgcgtaag gcgatttcaa aaggtatggt caactcttac
    12421 ttgactgctc cgacatttac acttaactac gatattgaca tgaccaacct catggcactt
    12481 cgtaagcaag tccttgagcc aatcatgaac aagactggtt tgaaagtaac ctttacagac
    12541 ttgatcggtc ttgcggttgt tcgtactttg atgaaagaag aacaccgtta catgaacgca
    12601 tctttgatta acgatgcaca agaaatcgaa ttacacaagt tcgtcaacct tggtatcgca
    12661 gtgggtctag atgatggctt ggtggttcca gttgttcacg gcgcagataa gatgagcttg
    12721 tctgactttg tggtggcttc gaaagatgtc atcaagaagg ctcaatctgg taagttgaag
    12781 ggggctgaaa tgtcaggttc gaccttctct atcaccaact tgggtatgtt tggtactaaa
    12841 acctttaacc caatcatcaa ccaaccaaac tcagcaatcc ttggtgtagc atcaactgtt
    12901 caaacaccag ttgttattga cggcgaaatc aagatccgtc caatcatggc actctgctta
    12961 accatcgacc accgtatcat tgatggtatg aatggtgcta agttcatggt tgacttgaag
    13021 aacttgctgg aaaacccatt ggaattgttg atctgagata agatgcaaaa ggcgttaaga
    13081 aaaacgtatg aaaataggaa atcaacgatg tgccttgagg cacgaggcga tttatctttt
    13141 tcaataggtt tttagcctgt gctcaatttg gtaaagagaa aaaataaaga aagggaataa
    13201 gagcgagaga gttttagcaa ttgaacccga gcggaaagct cggaaaaaag ataaatcgtt
    13261 tagaaaatca ggattttcta cgatttccta tttttcagtc gctttctctt cgctcttggt
    13321 atcataacta tggcaattga aattattatg ccgaaacttg gtgtagatat gcaagaaggc
    13381 gaaatcatcg agtggaaaaa acaagagggt gattttgtca acgaaggtga tgttatcttg
    13441 gagatgatgt cagacaagac aagtatggaa ttggaagcag aagaatcagg tgtactcttg
    13501 aaaatcgttc atggtaacgg tgcaactgtt cctgtaacag aagtcattgc ttaccttggt
    13561 gcagaaggcg aatcagttga agttggtagc gcacctgctc cagctgaggt tgcacaagca
    13621 actgccgact tgaaagcagc tggtttggaa gtgcctgcag ctcctgcagc agctccacaa
    13681 gctcctaagg ctgaattggc agctgacgag tacgacatgg ttgttgtcgg tggtggtcct
    13741 gctggttact acgcagctat tcgtggtgct caattgggcg gtaaaatcgc tatcgttgag
    13801 aaatcagaat ttggtggtac ctgcttgaac aagggttgta tcccaactaa gacctacctt
    13861 aaaaacgctg aaattcttga cggcttgaag attgctgctg agcgtggtat caaccttgct
    13921 tcaacaaatt ataccgttga tatggacaag acagttgact tcaagaacaa ggttgtgaag
    13981 acattgactg gtggcgttca aggtctcttg aaagctaaca aggtaacaat cttcaacggt
    14041 cttggtcaag taaatcctga caagactgtt gtcatcggcg acaaggtcat caaaggtcgt
    14101 agcatcattc ttgcaactgg ttctaaggtt tctcgtatca acatcccagg tattgattct
    14161 aaattggtgt taacttctga tgatatcctt gacttgcgtg aaattcctaa gtcactcact
    14221 gttatgggtg gtggcgtagt cggtgtggaa cttggtttgg tttacgcgtc ttacggtact
    14281 gaagtaacag ttgttgaaat ggctgaccgt atcattccag gtatggaccg cgaagtgtct
    14341 gttgaattgc aaaaagtcct ttctaagaaa ggcatgaaat tcttgacatc agttggagta
    14401 tctgaaattg ttgaagccaa caatcaattg acaattaaat tgaacgatgg ttcagaaatt
    14461 atctctgaaa aagctcttct ttcaattgga cgtgtacctc aattagctgg tcttgaaaat
    14521 cttcaccttg agttggatcg cggtcgtatc aaggttaatg cttaccaaga aacttctatc
    14581 ccaggaattt atgcacctgg tgatgtcaac ggtactaaga tgttggcaca cgctgcttac
    14641 cgtatgggtg aagtggcagc tgaaaatgct attcacggta accaccacaa ggctaaattg
    14701 gacttcacac cagcagcggt ttacacacac ccagaaattg ctatggttgg tttgactgaa
    14761 gatcaggcta tcgagaaata tggtaaagaa aacatcctta tcggtcgcaa cagctttact
    14821 ggtaacggtc gtgctattgc ttctaacgaa gcacatggtt tcgtaaaagt tatcgctgag
    14881 aagaaatatc acgaaatcct tggtgttcac atcatcggtc cagttgcagc tgaaatgatt
    14941 aacgaagcag caactatcat ggaatctgag ttgacagttg atgacgtggc agcatcaatc
    15001 cacggtcacc caaccttctc tgaagttatg tacgaagcct tccttgatgt tcttggtgtt
    15061 gcgattcaca acccaccaaa acggaaataa tcagataagc aaaaagaaag tccatgtggc
    15121 tttctttttt tgatgttcat aggatagtat caatctttcg cagtttttga ctgttatttg
    15181 atagaaaaac agactatact tgtagtagaa aaaggcaagg agaataaaga tgcgcaagat
    15241 tattttttta gatgtagacg gaaccttggt tgactatcat aatcggattc cagaatcagc
    15301 tattcgtgct attcgacaag ctcgcgaaaa tgggcacttg gtctatgtct gtactggtcg
    15361 cagtcgagca gaaatgcagc cagaattgtg ggagattggt cttgacggaa tgattggtgg
    15421 caacggctct tatgtcgagc atcaagatca ggtcatcatg caccagctcc tatcagaaga
    15481 ggatagcaga gcgattgtgg attggctcca tgaacgcggc ttggaatttt atctggagag
    15541 caacaatggc ctctttgcca gtgagaattt ccgtgaacgt gcccgtgaaa ccctgcggat
    15601 ttattccatg aataaaggaa aaacagcaga agaagtggcc gatcaggaag tagaagacgt
    15661 tatacacggc atgatttttg atggtcaact ctaccgcaat gacctcaaca aagtcagttt
    15721 tgtgctcgat tcctaccagg accacttgga ttccaagcaa gcctttccgc aactggtcgc
    15781 aaacacctgg ggaggtcgcg gagagtcagc tctctttggt gacttggggg tgaaagacat
    15841 cgacaaggcc catgtcattt ctgtattgct agactatttg ggtgctagtc aggcagacac
    15901 tatcgccttt ggtgacgcta aaattgatat ttccatgctg gactattgtg cggttggggt
    15961 cgctatgggc aatggcggag cggaaatctt ggctatggca gatatgataa cggacgatgt
    16021 agaagaagac ggcctctaca atgcctttga aagattggga ctacttgaca agtagctctc
    16081 agaataaatc atagtatccc ttgcaaaacc gcttacaatc tgataagata agagtaggat
    16141 tgttactgat aagcaggcaa aacctaagta gatagtgaag gggctggcaa cagtcgtatt
    16201 tgctatatgc ttgggttctt ttttatcagt cgagtaaata ggcggtaaag tagatgcaga
    16261 ttgaaaaagt ttataacaac aatgtcattc aagcaataga tcagcagggc cgtgagttga
    16321 ttgtcatggg gaaaggatta ggttttcaga aaaaagcagg ggaagaatta gacaccagca
    16381 aaatcgagaa aacctttgtg ctacaaaatg actaccaaca atcagattta tcgagtctgt
    16441 acctgcaaat ggagagcggt gaagtcgaag tagtcaatgc cattatcaat agggcagaag
    16501 aaactttaga agttcagttt gatttgtctt tgtatctagc cttagcagac catttacatt
    16561 ttgtatttca gcgatgccgt gaaggtatct ttattgagaa cccgctgtct tgggaagtac
    16621 gtaagtttta tccgaaggaa taccaaattg gtttagaagc cttgcagttg gtgcaggagc
    16681 gtttaggctt ggaactagga aagggagagg cctcgtctat cgctctccat ctggtaaatg
    16741 ctcagaagaa tggtgctttt ggcaaggaaa cccaaacaat tagtaaaatc gtgactcaga
    16801 ttttagacat tgtccgcctt cattttggta gtgtgaccta cgaggaggat accagctatc
    16861 atcgatttgt aacacatatt cagtattttg ctcaacgtgt ggccaatggg gttgttgaag
    16921 gccaattatc cagattcctt cgcctgtaca acaaaaattc gccagcatat tgcggaagtt
    16981 taccattttg aaatgtccaa agatgaacaa gtctatttaa ccattcatat tcaacgttta
    17041 aaaactagtt aaaaaattaa aaaagaaaaa aacggaaaac gcttgcaatt taatttgcga
    17101 tgtgttatca taatctcaac aaaaggattg ttactggtta gcaggcaaaa cctaaatata
    17161 tacaagatac tctttttggc ttgggccaag aggtagtgtt tggtatatgt ttaggttttt
    17221 ctgtttttcc agaaaagaaa ggagccggaa aatggcaaag gattatacag atttagctac
    17281 agatattgta gctcatgttg gtggaaaaga aaacatcagc agtttgaaac actgcgtgac
    17341 tcgtcttcgt tttggtctca aggatgagag caaggctgat acagactact tgaaggcgcg
    17401 tgatggcgtt gtgacagtag ttcaagcagg tggtcaatac caagtggtta tcgggaacca
    17461 tgtaccagac gtttatgtgg ctgtgcaaaa agttgcaggg atttcaggag atggcgcctt
    17521 ggatattgat gaaggtgacg gaccgaaggg aaatctattt gaccgatttg ttgacctagt
    17581 ttcaggtgtt ttccagcctt ctttaggagt gcttgcagct gcagggatta tcaaaggatt
    17641 ggtatccatc ctagccgcta caatgggttt gaacaatgat aatagcgccc tatatgctat
    17701 tttaaacaca gctggagatg gattcttcca attcttgcca atcgtcttag ctttcaatgc
    17761 tgcacgaaaa ttcagaatga atgaatttac tggtatggca attgctatgg cattggttta
    17821 cccaactctg ccagggacat ttgcgactct aaaagaagcg ggtctaaata atgtttttgg
    17881 cataccattt gtacttccag cagcaggtag ctacttgcaa actgtgatgc ctgtcctact
    17941 tgctgtctgg attgcttctc atattgagaa attcatgaag aaaattacgc ttgacgtagt
    18001 taaggtcttc attgtaccgt ttgtgacaat tctaatttca gttccattga cattcttggt
    18061 tgtaggtcct gtcgcgaact acgcttcaga tcttttgtct gcaggcttta ctgcggttat
    18121 gggctttagt ccactacttt atggtattct acttggtgct ttatggcaag taatggttat
    18181 gttcggactt cactgggcct tggtaccact tgcaatactt cagttttctc aaaacggatg
    18241 gtcaaatatt ttgttagctg cagcgcttcc aaactttact caaactggtg ttcttttggc
    18301 aattatgatg aaaaccaaag aatcaaaagt gaagtcagtt gcgatgcctg cttttatctc
    18361 ttctatattt ggtgtcactg agccagcaat ctatggtgtt actcttccta tgaaaacacc
    18421 attctacatt tcttgtgcag tgtcagcagt aattggtgca ggtctctcat tctttgattt
    18481 gaaaaactat gctatgggtg ctctcggtat ttttatgtat ccaggttatg ttagtcctga
    18541 actaggtgtg actccaatgt ggattatgat gggcttctct ttggcggcaa tcgtcgcatc
    18601 cttcgctatc caaatggcgc ttccagttcc ttacttatat ggagaaccaa ctgaaaaaaa
    18661 gtccgttgaa gaaacaaagg agtctgttcc agaattaaaa gaaattaaac aagaaattat
    18721 tgctagtcca ctaatcggta aagtagttaa attagaagat gttcctgatg cagtctttgc
    18781 ttcaggtgca atgggtaaag ggattgctat cgatccccta gatggtatac ttgtttctcc
    18841 agctaaggct gaaataactc ttgtattccc aaccaaacat gctattggtc ttcgtactga
    18901 aaatggagca gagctcctta tccatattgg tatggataca gtctctctag ctggtaaagg
    18961 ctttgaatcc ttcgtccaag taggtgacca agttgaagca ggacaaaaat tgctggaatt
    19021 tgatctccac caaatcaaag cagctgacct accggtcatc actccaatta tcgtgaccaa
    19081 tacagctgac tatgaggaca tcttggtaac ccaagaaagc caaatcaaca gtggtgatta
    19141 cctgttgaca acggtcaaat aactacattt tcgtatagaa acaatgaaat atttctatac
    19201 aaaacaggaa aaagactatt tgtatagatt atcgtaacaa atctaaatag atgctaatca
    19261 gaacgtac
//
LOCUS       DASGBY010000025        18935 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.025, whole genome shotgun sequence.
ACCESSION   DASGBY010000025 DASGBY010000000
VERSION     DASGBY010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18935
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.025"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            156..281
                     /gene="dltX"
                     /locus_tag="U1396_000700"
     CDS             156..281
                     /gene="dltX"
                     /locus_tag="U1396_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HEM5341906.1"
                     /translation="MQHPVVRFICRTLFYFFILLLLLYLYSYLDIGQGGFIYNEF"
     gene            298..1833
                     /gene="dltA"
                     /locus_tag="U1396_000701"
     CDS             298..1833
                     /gene="dltA"
                     /locus_tag="U1396_000701"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HEM5341907.1"
                     /translation="MISSMLERVEHFATENPDYPVYHYLGQLYSYGDLKADSDSLAAH
                     IDSLDLPANSPVLVFGGQEYQMLAIFVALTKAGHPYIPVDSHSALDRIEAILEIAEPS
                     LVFAVADFPLETSLPVLGLSEVEAIFEKKSTYQLMHPVSGDDTYYIIFTSGTTGKPKG
                     VQISHDNLLSFTNWMIRDKEFALPERPQMLAQPSYSFDLSVMYWAPTLALGGTLFALP
                     KELTLDFKTLFAAIQTLPFKIWTSTPSFVDMALLSREFDGEHLPDLTHFYFDGEELTV
                     KTAQKLRERFPKAVIVNAYGPTEATVALSAVAITDEMLVNYKRLPIGYAKPDSPTFIL
                     DEDGQVVPNGQQGEIVVSGPAVSKGYLNNPERTEAAFFQFDGLQAYHTGDLGVMTDEG
                     LLLYGGRMDFQIKYNGYRIELEEVAQHLNKSTYIEAAVAVPRYNADHKVQNLLAYVVP
                     KAGIMEQFDRELELTKVIKQELKERMMDYMMPSKFIYRDSLPLTANGKIDIKGLIAEV
                     NAQ"
     gene            1830..3071
                     /gene="dltB"
                     /locus_tag="U1396_000702"
     CDS             1830..3071
                     /gene="dltB"
                     /locus_tag="U1396_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HEM5341908.1"
                     /translation="MMEFFKQLPQLEPYGNPLYFFYLVLALVPIFIGIFFKKRFPLYE
                     TGVSLAFIVLMFTGTKTMQLLSLLAYIIWQTMLIFFYKHYRQRANQSWVFYLIVCLAV
                     FPLTWVKLAPTFSQHGAIFGFLGISYLTFRSVGMVIEMRDGLLTEFSLGSFLRFLLFM
                     PTISSGPIDRYRRFTEDYKQIPERTELLNMLDQTMHYIMMGFLYKFILAYFIGHTLLE
                     PLKAVALDQGGWFNLPTIGVMYLYGFELFFDFAGYSMFAIGISNLMGIRCPINFDQPF
                     KSRDLKEFWNRWHISLSFWFRDFVFMRLVKTLLKHKVFKNRNTVSNVAYLLNMLLMGL
                     WHGVTWYYIAYGLFHALGLIINDAWIRKKKSINLARKKAGQEPLPDNRWTSFAGMFVT
                     FHTVMFSFLIFSGFLDKLWFK"
     gene            3114..3353
                     /gene="dltC"
                     /locus_tag="U1396_000703"
     CDS             3114..3353
                     /gene="dltC"
                     /locus_tag="U1396_000703"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HEM5341909.1"
                     /translation="MDVKETILNIIEELFMEDVSEMMDEDLFDAGVLDSMGTVELIVE
                     LESRFNITVPVSEFGREDWNTANKIISGVVELMHA"
     gene            3346..4611
                     /gene="dltD"
                     /locus_tag="U1396_000704"
     CDS             3346..4611
                     /gene="dltD"
                     /locus_tag="U1396_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HEM5341910.1"
                     /translation="MRKQLWQIFGPVICATFLVILTLLFFPSSSRSNFKEEKQDAVAL
                     SYISFKSKYKKNRALGDKNHRFVPFFGSSEWSRFDSMHPSVLADAYQREYTPYLLGQR
                     GAASLTQYFGMQQIGAHLKNSQAIYVVSPQWFSPKGASSKAFEQYFSSDQATHFLQTS
                     AGDDYDRYAAKRFLELKSDCSLTGMFQKVASGKELSKWDREQLTWQAYLLEKQDALFS
                     RFADSGSNLGLVETEAMKLPETFSYDRLSKVANEDGSRSTQSNDFQIDDRFYRNRLQS
                     KIKKLKQSQTKISYLQSPEYNDFQLVLNEFAKHQTDVLFVIPPVNERWMNYTGLNKDM
                     YRATVAKIKYQLTSQGFNHIADLSEQGGIDYFMQDTIHIGWQGWLELDKYIHPFLAEQ
                     QAPVHYQLKKEFLTSEWATYKGDLNLFLK"
     gene            complement(4700..5814)
                     /locus_tag="U1396_000705"
                     /pseudo
     CDS             complement(4700..5814)
                     /locus_tag="U1396_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922179.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
     gene            complement(6274..7236)
                     /locus_tag="U1396_000706"
     CDS             complement(6274..7236)
                     /locus_tag="U1396_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEM5341911.1"
                     /translation="MGLLQDGKWVDQWYDTKSTGGKFVRTVTQFRNWITPDGQAGPTG
                     RGGFKAESGRYHLYISLACPWASRTLIMRKLKGLEDHISLSIVHPLMLENGWTFADGP
                     GVIKDSLFNSNYLYQVYLKTDPNYTGRVTVPVLWDKETNTIVSNESAEIMRMFNSAFN
                     DITGNYDDYYPANLQAEIDAMNDFIYPNINNGVYKAGFSTSQAVYEKEVKNLFAALDK
                     LEEHLADKNYLVGNQLTEADIRFFTTLVRFDPVYFGHFKCNIKALVDYPNLWDYTKRI
                     YNHSGIAETVDFDHIKQHYYGSHKTINPTGIVPVGPDLDWTLEN"
     gene            7375..8091
                     /locus_tag="U1396_000707"
     CDS             7375..8091
                     /locus_tag="U1396_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5341912.1"
                     /translation="MRLDKCLEKAKVGSRKQVKKLFKAQQIKINGHAAQSLSQIVDPE
                     LQTIQVSGKKVALEGSAYYLLHKPAGVVSAVTDQEHQTVIDLISPQDSREGLYPVGRL
                     DRDTEGLVLITNNGPLGYRMLHPSHHVDKVYYVEVNGCLAEDASKFFASGVTFLDGTR
                     CQPADLTVLEASLDHSRATIKLAEGKFHQVKKMFLAYGVKVTYLKRISFGGFELGDLE
                     RGAYRQLTPNEMEHLFTYFD"
     gene            8105..8584
                     /locus_tag="U1396_000708"
     CDS             8105..8584
                     /locus_tag="U1396_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEM5341913.1"
                     /translation="MSIYDFTVQKQDGTDQSMAEYQGQVLLIVNTAPGCGLAPQYKEL
                     QELYDSYRGQGFVVLDFPCNQFLNQAPGSAEDINQTCSLNYGTTFPRFAKIAVNGSEA
                     SPLYRYLKKEKSTLLGGRIEWNFTKFLVDRQGRVVKRYLPTTSPLKLKEDIELYLEK"
     gene            complement(8603..9604)
                     /locus_tag="U1396_000709"
     CDS             complement(8603..9604)
                     /locus_tag="U1396_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM5341914.1"
                     /translation="MIRHHNYLKIFTFLLILLFVIFLLSLSIGYSNSSFSDLIDIMSG
                     RASSSTLLIIGRIRLPRIIASIIGGASLALAGLLLQTLTRNPLADSGILGINAGAGLV
                     VALFVGLSSKISPVLLSLMPLFAMMGGGLTIFLVYWIARKKLYGIHPARLIITGVGIS
                     SMLSGIMVSIISQLDDFKMEYIVQWLSGRVNGGDWKTIAIYTPLLLLVWMATFSRSRS
                     LNIMNLNDQTAMALGLHLQRERRITLVLATALASLSVILVGNITFVGLIAGHIVRKWL
                     GNDHRVIIPATMIIGSFILLLADTIGRVLLVGTGIPTGIIVSLIGAPYFLWLLKQEG"
     gene            complement(9601..10626)
                     /locus_tag="U1396_000710"
     CDS             complement(9601..10626)
                     /locus_tag="U1396_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM5341915.1"
                     /translation="MNKLVSSRYPKTKPKNIWLVFFIICLSFIAGVYLSLRFGAISYS
                     HQQLMETLTHPLTDSSAQDVIIDLRLPRMVAAILVGAAMAQAGAMMQGITRNPIADPG
                     LLGINAGAGLALIVAYALFGGLHYSQILLICLLGSCLAAGLVFGLAYQVQKGYNQLRL
                     ILSGAMVASLFSAIGQAITIYFDLSTAVIGWQAGGLVQVNWKMLAIIAPLIIIGLILA
                     QLFSHQLTILSLNETVAKNLGQRTLLMTLVLLGIVLLLSASAVALVGSLSFIGLIIPH
                     FIRIFTGKNYKLLLPLTAFAGASFLIWVDLVCRSINPPVETPISAVISIIGLPCFLWL
                     IRKEKHF"
     gene            complement(10640..11569)
                     /locus_tag="U1396_000711"
     CDS             complement(10640..11569)
                     /locus_tag="U1396_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5341916.1"
                     /translation="MKKFLAIFSLFVGLVFLTACSTSSSSTDVELSSMPKIEGITYHG
                     DIPKNPKKVVNFAYSYTGYLLQLGIDVSSYSLDLEKNSPVFGDKLKDVPQLTTADTEA
                     IATQKPDVILVFSGDDNLETLKEIAPVIEITYGKSDYLKMLTDIGQVFGKEKEAQAWL
                     DQWDKKVATAKEELKGLIDTSSTFTVMDFFDKNIFLYGNNFGRGGELIYRALGFAAPA
                     KVQEDIINKEGWFGVSQEALPEYVGDYVLVNVNDKTKEAAASLKESDIWKNLPAVKNG
                     HVIEIDYNLFYFSDPMSLDLQIDAFVSEIQKLQ"
     gene            complement(11582..12367)
                     /locus_tag="U1396_000712"
     CDS             complement(11582..12367)
                     /locus_tag="U1396_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019774490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5341917.1"
                     /translation="MSSIQAENIQVSYDNRIIIDELSTSIPKGSITTIIGANGCGKST
                     LLKALTRIIPVQEGAIYLDGQAISQLPTKEVAKKLALLPQVLEATEGISVYELVSYGR
                     FPHQNGLGHLTDQDREKINWALEVTQTAPYARLPVDDLSGGQRQRVWIAMALAQDTDT
                     IFLDEPTTYLDLNHQLEVLELLKELNQSRQKTIVMVLHDVNLSARFSDYMIAMKEGDI
                     RYHGSVSNMMTTEILRDIFSIEPQLMQVAGQDYPILLTYDLKK"
     gene            complement(12519..13964)
                     /locus_tag="U1396_000713"
     CDS             complement(12519..13964)
                     /locus_tag="U1396_000713"
                     /EC_number="6.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019792455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-
                     lysine ligase"
                     /protein_id="HEM5341918.1"
                     /translation="MITIERVLEILKADANFRHIKQNGQTDSTWTDVQFDALSYDSRT
                     VSPTTLFFAKGLAFKKEFLEKAIEVGLAFYVSEIDYEVGIPAIIVHDIKQAMSLIAME
                     FHGHPQKQLKLVAFTGTKGKTTAAYFAFNILKINHKPAMLSTMNTTLDGKTFFKSTLT
                     TPESLDLFAMMAEAVKNGMSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIE
                     HPTFEDYFYHKRLLMDNSRAVIVNAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSAG
                     FDFTATGKLAGHYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQTNVPGRMEV
                     LTQQNGAKVFVDYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLN
                     DYPQIEVILTADDPNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTSSPKDAV
                     IIAGKGADAYQIVNGEKAAYDGDLEVAKQYL"
     gene            14111..14857
                     /locus_tag="U1396_000714"
     CDS             14111..14857
                     /locus_tag="U1396_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEM5341919.1"
                     /translation="MFYSYLRTLLTFLLWAINGNIHYHDREKILPQEENYILIAPHKT
                     FWDPVLLGYAAAPKQFIFMAKKELFKDRGFGWWISKCGAFPIDRDNPGMAAIKYPVNM
                     LKKSDRSLVMFPSGSRHSSELKGGVAVIAKSAKVKLMPATYVGPMTIKGLLAGERIDV
                     AFGNPIDVSDIKRMDDAGTAEVTSRIEAEFKRLDDHAASFQTKKKPNILTYIYRIPVL
                     LLVALILGLTYAFSYIASFFWQPSTQLDKK"
     gene            14924..15586
                     /locus_tag="U1396_000715"
     CDS             14924..15586
                     /locus_tag="U1396_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5341920.1"
                     /translation="MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTG
                     LTDFPQTAQTSSSSDLVEETSTEASEEPSQLVVDVKGAVVKPGLYTLEADARVNDAVE
                     AAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSSEEKSTSQVN
                     LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVT
                     VE"
     gene            15570..17807
                     /locus_tag="U1396_000716"
     CDS             15570..17807
                     /locus_tag="U1396_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEM5341921.1"
                     /translation="MSRLSKLPCQPVHLAVLAVAAYFAVHSFSLLTMGLLSLLLLVFG
                     FRQGKAVFIKTLPLLALCGLFFGYQKVQWERADQLAPEQVTTMQVIPDTIEVNGDSLS
                     FRGRADGQTYQVFYKLTSQEEQTYFQKLTGLVQLEVEAEISLPAGQRNFKGFDYQAYL
                     KTQGIYRTVKITAIKKIVPVQSWNVFDWLSNWRRQALVYVKTNFPAPMSHYMTGLLFG
                     ELDSEFDQMSDLYSSLGIIHLFALSGMQVGFVIDKFRWILLRLGLTKETVDKLQIPFS
                     LVYASLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLILPRFLLTAGGVLTFT
                     YAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFAFSFVFDV
                     LLLPGLSVIFLLSPIVKITWVNGFFVFMEKIIVWVADLGLRPWILGKPSELVLLLLLV
                     SLFLLYDFHRRKKWLLGLSLVLALLFFITKHPLENEVTVVDIGQGDSIFLRDMRGRTV
                     LIDVGGRVDFAAKEAWQERSRQANAERTLIPYLHSRGVDRIDSLVLTHTDTDHVGDVL
                     EVAKQVQIGRIYVSPGSLTVPDFVATLKEINVPVHVVEVGERLPIFDSYLEVLYPDGT
                     GDGGNNDSIVLYGRLLKTNFLFTGDLEQGELDLIESYPNLPVDVLKAGHHGSKGSSYP
                     EFLDHIEAKIALVSAGENNRYKHPHQETLERFDSRNIQVYRTDQQGAIRFRGWREWRI
                     ETVRR"
     gene            17809..17952
                     /locus_tag="U1396_000717"
     CDS             17809..17952
                     /locus_tag="U1396_000717"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341922.1"
                     /translation="MINPMHLWFYSFKVYVLAALSGYILHYVTTPASVNDFKEVAALL
                     ERC"
     gene            18131..18787
                     /locus_tag="U1396_000718"
     CDS             18131..18787
                     /locus_tag="U1396_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM5341923.1"
                     /translation="MSVKDFMTRKVVYISPDTTIAHAADIMREQDLHRLPVIENDKLV
                     GLVTEGTIAEASPSKATSLSIYEMNYLLNKTKVKDVMIKNVITVSGYASLEDAAYLMY
                     KNKVGILPVVDNGQLYGVITDRDIFAAFLHVSGYGEEGVRARFLVENKAGELEKIIRL
                     VADKDYNIVSTVQLATKSGKVVIEVQIDGKVDVEEVRTLFEGAGIQVDSLVPTVAKNI
                     "
BASE COUNT         5378 a         3651 c         4314 g         5592 t
ORIGIN      
        1 gtgaaaaaag aaataaattg acaaaattat ggtaaaatat aggttgattt aaaattaatc
       61 atctaatgaa tggaatgagt tcgaagtaag tcaagattga ctagacattg tatttaaagc
      121 aattcgcagg aataagagat ggaaggagat agaacatgca acatccagtt gtacgattta
      181 tctgtagaac cctgttctat ttttttatat tgttactact tttgtatctg tatagttatt
      241 tagacattgg acagggagga tttatctata atgagtttta aagaggagag tataaaaatg
      301 attagcagta tgttagagcg ggtagagcat tttgcgacag aaaatcctga ctaccctgtt
      361 taccattatc taggacagtt gtatagttat ggggatttaa aggcagattc agattcttta
      421 gcagcccata ttgatagttt ggatttacca gcaaactctc ctgtccttgt ttttggcgga
      481 caggagtacc agatgttggc aatctttgtt gccttaacca aggctggcca tccgtatatc
      541 cctgtagata gtcattctgc tttggatcgg attgaagcta ttctggaaat agcagagccg
      601 agtttggtgt ttgcggtagc agactttccg ctagagacaa gtttgccagt gcttggtttg
      661 tctgaagttg aagccatttt tgagaagaag tcgacttatc agttgatgca tcctgtaagt
      721 ggagatgata cctactatat tatcttcact tctgggacaa cgggtaaacc aaaaggggtg
      781 caaatttcgc atgacaattt gctcagcttc actaactgga tgataaggga taaggagttt
      841 gcgctaccag agcgaccgca aatgttggct caaccttcct attcgtttga cttgtcggtt
      901 atgtattggg ctccgacgct tgcccttggt gggaccttat ttgccctacc gaaagagttg
      961 actttggatt ttaagacctt atttgcagct attcaaactt tgccatttaa gatttggact
     1021 tcgacaccat catttgtaga tatggctttg ctatctcgtg agtttgatgg ggaacattta
     1081 ccagatttga cgcatttcta ttttgacgga gaggagttaa ctgtaaaaac agctcagaag
     1141 ctccgcgaac gttttccaaa agctgtgatt gttaacgctt atggaccgac cgaagctaca
     1201 gtcgccttat cagcagttgc catcactgat gagatgctgg tgaattataa acgtttgccg
     1261 attggctatg ccaaaccaga ctcgccaact tttattttgg atgaggatgg tcaagtagta
     1321 ccgaatggtc aacagggaga aattgttgta tcaggtcctg ctgtctctaa aggatatttg
     1381 aataatcctg agagaaccga ggcggcattt ttccagtttg acggcttaca ggcctatcat
     1441 actggggatt tgggtgtaat gacagatgaa ggtctattac tctatggtgg gcgtatggat
     1501 ttccaaatta aatataatgg ttatcgtatc gagttggaag aagttgccca acacttaaat
     1561 aaatcaacct atattgaggc tgcggtagct gttccacgtt ataatgctga ccataaagtg
     1621 caaaatctgt tagcttatgt tgtccctaaa gcagggatta tggagcagtt cgatcgagag
     1681 ttggagttaa ccaaggtcat caagcaggag ttaaaagaac ggatgatgga ttatatgatg
     1741 ccttcgaagt ttatttatcg agacagtctt cctttgactg caaatgggaa gattgatatt
     1801 aagggattga tcgctgaggt gaatgctcaa tgatggagtt tttcaaacag ctacctcagt
     1861 tagagcctta tggaaatcca ttgtactttt tctatctagt cttggcgcta gtaccaattt
     1921 ttataggaat cttttttaaa aaacgtttcc ccttgtatga aacaggtgtt agtttagcct
     1981 tcattgtctt gatgtttaca ggtacaaaga caatgcaatt gctgtcttta ttggcctata
     2041 ttatttggca gacaatgttg atttttttct acaagcatta tcgtcaacgg gcaaatcaaa
     2101 gctgggtctt ctatttaatc gtgtgtttag ctgtttttcc gttgacttgg gtaaagttgg
     2161 caccgacttt tagtcagcat ggggcaattt tcggtttttt aggtatttct tatttaacgt
     2221 ttcggtcggt cggaatggtg attgaaatgc gggacggttt actaacggaa tttagtttgg
     2281 gaagtttttt gcgatttttg ctatttatgc caactatttc gagtggtcct attgatcgtt
     2341 atagacggtt tacggaagat tacaaacaaa ttcctgagcg aactgagtta ttaaatatgc
     2401 tcgatcagac tatgcattat attatgatgg gcttcttata taagtttatt ctagcctatt
     2461 ttatcgggca tactttactg gagcctttaa aggcagtagc cttggatcaa ggtggatggt
     2521 ttaacttacc tactattgga gttatgtatc tttatggttt tgaattattc tttgactttg
     2581 caggctattc catgtttgcc ataggtattt ccaatcttat gggtattcgc tgcccaatta
     2641 actttgatca accgttcaaa tcgcgtgatc ttaaggaatt ttggaatcga tggcatatca
     2701 gcttatcttt ttggttccgt gatttcgtct tcatgcgtct ggttaagact ttgttgaaac
     2761 ataaggtttt caaaaatcga aatacggtat ctaatgttgc ctatctgtta aatatgctct
     2821 tgatgggctt gtggcatggt gtaacatggt attatattgc atatggtctc tttcatgctt
     2881 tggggttgat catcaatgat gcttggattc gtaagaagaa atcaattaat ttagctcgaa
     2941 aaaaagctgg gcaagaacca ttgccggata atcgttggac gagtttcgct ggtatgtttg
     3001 tgaccttcca tacggtcatg ttctctttct tgatattttc aggattttta gataaattgt
     3061 ggttcaagta gacaataggt aacgattgta taaatcgtag aaaggaatat aaaatggatg
     3121 taaaagaaac aatattgaat attatcgaag aattatttat ggaagatgta tctgaaatga
     3181 tggatgaaga cctatttgat gcgggtgttt tggatagtat gggaactgta gaacttattg
     3241 tggagttaga aagtcgtttt aatattacag ttcctgtttc agagtttggt cgtgaagatt
     3301 ggaatacagc taacaaaatc atttctggtg ttgtggagtt gatgcatgcg taagcaattg
     3361 tggcagattt ttgggcctgt gatttgtgca acgtttttag ttattctcac gttgttgttt
     3421 ttcccgagtt cttctcggtc aaatttcaaa gaagaaaaac aagatgcagt agcattgtct
     3481 tatattagtt ttaagagtaa atataagaaa aatagggctc tgggagacaa aaatcatcgt
     3541 tttgttcctt tctttgggtc aagtgaatgg tcacgttttg atagtatgca tccgtcagtg
     3601 ttggcggatg catatcagag agagtatacc ccctatttgt taggacaacg tggtgcagct
     3661 tcgctgacac aatattttgg catgcaacag attggggcac atttaaaaaa tagtcaggct
     3721 atctatgttg tttctcctca atggttttca cccaaagggg catcatctaa ggcatttgaa
     3781 caatatttta gtagtgatca agctactcat tttctgcaaa caagtgctgg ggatgactat
     3841 gatagatatg cagcaaagcg tttcttagag cttaaatcag actgtagttt gacaggaatg
     3901 tttcaaaaag tagctagtgg taaggaattg tcgaaatggg atagagagca gttgacctgg
     3961 caagcctatt tattagaaaa gcaagatgcc ttatttagtc gctttgctga ttctggtagt
     4021 aatttaggat tggtagaaac ggaagcgatg aaacttccag agactttttc ctatgaccgc
     4081 ttgagtaaag tggctaatga ggacgggagt cgttctactc aatcaaatga tttccaaatt
     4141 gatgataggt tttatagaaa tcgtcttcag tcaaaaatca aaaaacttaa acaatcccag
     4201 acaaaaatat cttatctgca atcaccggag tacaatgatt ttcagctggt tttgaatgaa
     4261 tttgctaaac atcagactga tgtgctattt gtaattcccc cggttaatga acgttggatg
     4321 aactacactg gtctcaataa agatatgtat cgggcaacag tagcaaagat taagtaccag
     4381 ttgaccagtc aaggtttcaa tcatattgct gatttgtcgg agcagggggg gatagattat
     4441 tttatgcaag atacgattca catcggttgg caaggctggc tggagcttga taagtatatt
     4501 cacccattct tggcagaaca acaagcacct gttcattatc agctaaaaaa agaattccta
     4561 acttccgaat gggctacata taagggagat ttaaacttat ttttgaaata gttagataca
     4621 gttatgataa aaagcaagaa ggctttgaat taggaagtct ccttgctttt ttgttctttt
     4681 actgtaataa actgaatgat tacatacctt ctcccaacaa actgtggttg gctttgcgga
     4741 agcgaataac atgataggca atcatagcgt gtgagagcag gtttaagata acaaatagta
     4801 ggatatttga atgaccgtcc agcaataagg caacatttcc aattagtaaa atgagagcat
     4861 agatgaacag ccctctcctg ccaacttgat ggacttgttg attatagaag gaggtcgaaa
     4921 ggataccact atagaagaga aggtttccta caatcagcat gggcaaggcc aaatcattat
     4981 gatgactagg gaaaagctcc attgccactg tgaagaaatt caagccaaga acaattacca
     5041 agtgagcgta tagcagaaca gtcgatctgc cttgcggtga tggtcgatag tgagataggt
     5101 ctgagaaata tagaagatga acagagacgc cattgcgaag aagaggagga ttccttccaa
     5161 aggaagttct agaatcggat aatttttcaa aatcacaatg accgtctcac caaaggtaat
     5221 aatagtaatc aattggcacc gttccaccat gtgtgggaag ttgatggggt catgactcat
     5281 tctcttttgg aagaagaagg aaatcaagaa gggaataata tagacaatca gcatccgttc
     5341 atcattggtc catagcttga agacgaccaa caaggttaca ccggcaaaga caacaatatt
     5401 agtcgccagc atctgcaagg ttgccttgat gtcctcatta aagtcaatcc gtcttcctct
     5461 taggtaatat tgtaggagaa taatgacata agacaaggtt aaaaaggtgt taaatggcag
     5521 agctgtttgt gcaaaatcgt tgctaaaatt aagtgacata tttccaatca gatacatgga
     5581 tggaataatg gtgaaaatat ccaggaaatc ccgttcgcca tatttattga gatagatggt
     5641 ttcattcatc cacaaggtta taataatcaa gtttgcagtg ataaatgttg taacttcctt
     5701 gaaaccgatg gggttctcgt gtagcaagcc agtcagtgaa gaagtagcta atacaaagac
     5761 caaatcataa aataattcat aatttgacac acgttttgcg ataatttcag acatgtcaat
     5821 ctccttttta aaaaatctga aatattatat cacagaaatt gtgagggagc caaccagtta
     5881 gtcttggagc tgattttctg aaaatcgtgg aaaatgtctg taggagctat ttaattgttg
     5941 tttcattagt ggatgacaac ttgtttataa tggcacaatt tattcatttc atgctataat
     6001 atctaagtcg aaatcactaa acagcgcaag ttgggaggtg aaactttatg cgtatactct
     6061 ttgaacttgt cctgctaccc ttgttagtat ctatattggc aaacgtgatt tgggaatggc
     6121 taatccgatt agcggacaaa tgcgacaaat acaaacaata gcctgagtgc cttgagcaag
     6181 cacaaaaaac acccatggcg gcaaccgtgg gtgttttctt tatgcgctta tctctttgaa
     6241 cttttaagca caatgattat aacatatgtg tctttagttt tcaagtgtcc agtccaagtc
     6301 tggtccgact gggacaatac ctgttgggtt aatggtttta tggctaccgt agtagtgctg
     6361 tttgatatgg tcaaagtcaa ccgtctccgc aataccagag tggttgtaaa tccgcttggt
     6421 ataatcccac aagtttggat agtcaaccaa agccttgata ttgcatttga aatgcccaaa
     6481 gtatacaggg tcaaaacgta ccaaggtggt aaagaatcga atatcagcct ctgtcagctg
     6541 attgccaacc agatagttct tatcagccaa atgctcttcc aatttatcta aggcggcaaa
     6601 aaggttcttg acctcttttt catagactgc ctgactggtt gaaaaacctg ccttgtagac
     6661 tccgttgttg atgtttggat agataaaatc attcatggca tcaatctcgg cttgcaggtt
     6721 tgctggataa tagtcatcgt aatttccagt aatatcatta aaagcagagt taaacatgcg
     6781 catgatttca gccgattcat tgctgacgat ggtatttgtt tctttgtccc aaaggacagg
     6841 aacggtcaca cggccagtgt aatttggatc agtcttcaaa tatacctgat agagataatt
     6901 gctgttaaag agggaatcct tgataacacc gggtccgtcc gcgaaggtcc aaccattttc
     6961 caacatgagc ggatggacga ttgacaggga aatgtggtct tccagaccct tcaattttcg
     7021 catgattaag gtccgactcg cccaaggaca ggccagagaa atatagaggt ggtagcgacc
     7081 agactcagcc ttgaaaccgc ctcttcctgt tgggcctgcc tgtccgtctg gcgtaatcca
     7141 gttgcgaaat tgtgtgacag tacggacaaa tttaccgcct gttgacttgg tgtcatacca
     7201 ttgatcgacc catttgccat cttgtaaaag tcccatgaat tttctccctt actgaaaaaa
     7261 tgggaaatcc aataggatga ttggatttcc tttgtaaaaa aatatatcac taactagtat
     7321 tgtaaacctt tttcaaaaag agtcaagcta tatgatttgt gatacaatag tcccatgaga
     7381 ttggacaaat gtttagagaa agccaaagtt ggctcgcgta agcaagttaa aaaacttttc
     7441 aaagcccagc aaatcaagat taacggacac gcagctcaaa gcctaagcca gattgttgac
     7501 ccagagttac aaactatcca agtttcgggt aaaaaagttg ccttagaagg ctccgcctat
     7561 tatttgctcc ataaaccagc aggagttgtt tctgccgtga cagaccagga gcatcagaca
     7621 gtcatcgact tgatttctcc gcaagacagt agggaaggtc tctacccagt cggtcgcctg
     7681 gacagggata ccgaaggcct agtcctcatt accaacaatg gtccgctcgg ttatcgcatg
     7741 ctccatccca gccaccatgt ggacaaggtc tactatgtgg aggtaaatgg atgcttggct
     7801 gaggatgctt caaaattttt tgcctcaggt gttactttct tggatggaac acggtgtcag
     7861 cctgcagatt tgactgtctt ggaggcttct ttggaccata gcagagcgac catcaagctg
     7921 gcagaaggta agtttcatca ggtcaaaaag atgtttttag cctatggtgt caaggtcact
     7981 tatctcaagc ggatttcctt tggtggtttt gagttggggg atttggaacg aggtgcatac
     8041 agacaactca caccaaatga aatggaacat ttattcactt attttgacta gaggaggata
     8101 tataatgagc atttatgatt ttacagtaca aaaacaagat ggaacagatc agtccatggc
     8161 tgagtatcaa ggacaagttt tacttatagt caatacagcg ccaggttgtg gattggcacc
     8221 acaatacaag gaactacagg agctatatga tagctatcga ggccaaggtt ttgtagtgtt
     8281 ggatttccct tgcaatcaat ttttaaatca ggctcccggt tctgctgaag acatcaatca
     8341 gacctgtagc ttgaattatg gtacaacttt tcctcgtttt gctaaaattg ctgtgaatgg
     8401 atctgaagct agtccgctat atcgctatct taagaaagaa aaatcaacct tattaggagg
     8461 tcgaattgag tggaatttta ccaagttttt ggtggataga caagggcgtg tggtcaaacg
     8521 atatttacca acaactagtc cattaaaact taaagaggat attgaacttt acctagaaaa
     8581 ataacaagaa ggctggagtc atctagcctt cttgttttag taaccacaga aaatagggag
     8641 cgccgataag ggagactatg atgccggttg ggatgcctgt tccgacaagt agtactcgtc
     8701 ctatggtatc cgctagaagt agaatgaagc ttcctattat catagtagct ggaatgatga
     8761 cacgatggtc atttcctaac catttgcgca caatgtgacc agcaatgaga ccaacgaagg
     8821 ttatattacc aactaaaatg acactaagag aggctagggc ggtagccaat accaaggtaa
     8881 tccgcctttc acgctgtaag tggagtccca aagccatggc tgtctggtcg tttagattca
     8941 taatattgag tgagcgactt cgactaaacg ttgccatcca caccaataga agaagaggag
     9001 tatagattgc gatagttttc caatctccac catttactcg accgctgagc cactggacaa
     9061 tgtattccat cttaaagtca tctaattggc tgatgatgct gaccatgata ccagacagca
     9121 tgctcgaaat tccaactccc gtgataatta agcgtgcagg atggatgccg tacagcttct
     9181 tacgtgcaat ccagtaaact agaaaaatgg ttaatccacc gcccatcata gcaaatagag
     9241 gcatgagact caataagaca gggctgattt ttgaagagag accgacaaat agtgccacaa
     9301 caagaccagc tcctgcgttg attcctaata ttccagaatc tgccagagga ttgcgggtca
     9361 aagtttgtag caacaaaccc gccaaagcca gagaagcccc tccgataatg gaggcgatta
     9421 ttctaggtaa gcgaattcgt ccaatgataa gtagagtcga tgaactggca cgcccactca
     9481 tgatgtcaat gagatctgaa aaggatgaat tgctatagcc gatagataag gaaagtagga
     9541 aaatgacaaa taaaaggatt agcaggaatg tgaatatttt tagatagttg tgatgtctta
     9601 tcaaaagtgt ttctcctttc taatcaacca taggaagcaa gggagaccaa tgatactgat
     9661 gactgcgcta atgggagttt caacaggtgg attgatagaa cggcaaacca aatctaccca
     9721 gatgaggaaa ctagcccctg caaaggcagt taatggcaag agtagcttgt aatttttccc
     9781 tgtaaatatg cggataaagt gaggaataat gagcccgata aaagaaagcg agcccacaag
     9841 agctaccgca gaagctgaga gtagaaggac aattcccaac aaaaccaagg tcatcagtaa
     9901 ggttcgttga cctagatttt tagcaacggt ttcgttaaga ctcaggatgg tcagctgatg
     9961 cgaaaagagt tgagcaagga tgaggccgat gatgataaga ggagcgatga tggccagcat
    10021 cttccagttt acctgtacca atccccctgc ttgccagcca attactgcag ttgataaatc
    10081 aaagtagata gtaatagcct gaccaatagc agaaaataga cttgctacca tggcgccaga
    10141 taaaattaaa cgtagttgat tgtagccttt ttgcacctga taagctagtc caaagactag
    10201 accggctgcc agacaggagc ccagtaaaca tattaataaa atttgactgt agtgcaaacc
    10261 accgaataga gcataggcaa caatgagagc aagtcctgct ccagcattga ttcctaataa
    10321 gccaggatcg gcaatcggat tgcgtgtaat tccttgcatc attgccccag cttgggccat
    10381 tgcagctccc accaagatgg cggctaccat tctaggcaag cgcaaatcga tgataacatc
    10441 ctgagcggaa gaatctgtca gtggatgcgt tagggtttcc atcagttgtt ggtggctata
    10501 agaaatagct ccaaagcgta aactaagata gactccagct atgaaagaaa gacagatgat
    10561 gaaaaaaaca agccaaatat tctttggctt tgttttggga taacgagaac ttactagttt
    10621 gttcatatat ccagtccttt tactgaagtt tttgaatttc tgagacaaag gcgtcaattt
    10681 gtaaatctaa agacatcgga tcggagaagt agaagaggtt atagtctatc tcgatgacgt
    10741 gaccattctt tacagcaggt agatttttcc aaatatcact ttctttgaga gaggcagctg
    10801 cttcttttgt tttatcattg acgttaacaa gcacatagtc gccaacatat tctggaagag
    10861 cttcttgaga taccccaaac cagccttctt tattgatgat gtcttcttga acctttgcag
    10921 gagcggcaaa accgagagcg cgatagatta attctccacc acgaccaaag ttattaccat
    10981 aaaggaagat gttcttatcg aagaagtcca tgacggtaaa tgttgaactt gtatcaatca
    11041 atcctttcaa ttcctctttc gcagtagcaa ctttcttatc ccattgatct aaccaggctt
    11101 gtgcttcctt ttcttttcca aaaacctgac caatatctgt cagcattttc aagtagtcac
    11161 tctttccata agtgatttca ataactggag caatttcttt cagtgtttct aagttatcat
    11221 caccagaaaa tactagaatg acatctggct tttgtgtggc aatcgcttct gtatctgccg
    11281 ttgtcaattg tggaacatcc tttagtttgt ctccaaagac gggactattt ttctctaaat
    11341 ctagactata gctagataca tcaattccta attgtaagag atagcctgtg taagagtaag
    11401 caaagttgac aactttttta ggattttttg gaatgtcacc gtggtaagta atgccttcaa
    11461 tctttggcat gctagacaat tctacgtctg ttgaagagga agaggtagaa caagctgtta
    11521 agaaaaccag cccaacaaat aaactaaaaa tagctaaaaa ctttttcatt ttttctcctt
    11581 attatttttt taaatcgtaa gttagcaaaa tagggtaatc ttgaccagca acctgcatca
    11641 attgaggttc aatgctaaaa atgtccctca gtatctcagt tgtcatcata ttggacacag
    11701 acccatggta gcgaatatct ccctctttca tggcaatcat ataatctgaa aatcgagctg
    11761 ataaattgac atcgtgaagg accatcacaa tggttttctg tcggctttga ttcagttctt
    11821 ttaaaagttc taagacttcc aattgatgat tgagatcaag ataggttgtt ggttcatcta
    11881 agaaaatggt atccgtatct tgggcaagtg ccatcgcaat ccaaacacgt tgcctctgac
    11941 cacctgataa atcatcaact ggtaacctag cgtagggagc ggtctgggtg acttccaagg
    12001 cccagttgat tttctctcta tcctgatcag tgagatgccc cagcccattt tgatgcggaa
    12061 agcgaccata ggagaccagt tcataaacag aaatcccttc tgtcgcttct aagacctgag
    12121 ggagcagggc caattttttt gcaacttctt tggttggcag ttgtgaaatg gcttgtccat
    12181 ctaaatagat agccccttct tgaacaggaa taatccttgt caacgcctta agcaaggtcg
    12241 attttccaca gccattggca ccaatgattg tcgttatact tccttttgga atacttgttg
    12301 ataattcatc aataataatc cgattgtcgt aagagacttg gatattttcc gcttgaatcg
    12361 aagacacaaa ctcctccttt ccagaatatg attcattaat aatttgttcc gaccagtatt
    12421 atatcaaaaa aatttaccaa aacaaagagt tttctgaaaa ttttaattta atgagaatcg
    12481 ttataaaaaa gtccttgtct gtgaacaagg accgtatgtt acaaatattg ttttgctact
    12541 tccaaatcac cgtcataggc ggccttttcg ccgtttacaa tctggtaggc gtcagccccc
    12601 ttgcctgcga tgatgacggc atctttcgga gagcttgtct gactcatggc tgtgcgaata
    12661 gcttcttccc ggtccaagat aaagttgctt ggacgggtca tgtgggcacg gatttgttca
    12721 gcaatagcag ctgggtcttc acggttgggg tcatcagctg tcagaatcac ctcaatctgc
    12781 ggatagtcat tgagcagaag accgaagtct ttgcggcgac tttctccctt gttaccagga
    12841 gctcccaaaa tcaaaaatac cttgccagtc tggtgctcta agacgacatc aatcagcttc
    12901 ttgacactat cgccgttatg ggcgtagtcc acgaagacct tggcaccatt ttgctgggtc
    12961 aggacttcca tacgaccagg gacattggtt tgggcaatcc ctgtgtgaat atcttccaga
    13021 cttgctccca aacggagaca ggccagtcca gctgcgatgg cattttcttg gttgaaacca
    13081 ccaatcagct ggatgtcgta atggccagcc aatttgccag tcgctgtgaa atcaaaacct
    13141 gctgactgac taatctggtt ttcagaagtc ggcccataaa agtcatggtc tttggagctg
    13201 acttgctctt tcacgacttc aaaatggtcc attcctgcat tgacaataac cgctctgcta
    13261 ttgtccatca aaagacgctt atggtagaag tagtcctcaa aggtcggatg ctcaatgggg
    13321 ccgatgtggt cggggctgat gttgaggaag acaccgacgt caaaggtcag cccgtaaacc
    13381 cgcttgacca agtaagcctg gctggacacc tccataatca agtggctcat gccgttcttg
    13441 accgcctccg ccatcatggc aaagaggtct aggctttcag gcgtggtcag ggtggacttg
    13501 aagaaggttt ttccgtccag cgtggtgttc atggtcgaaa gcatggcagg cttgtggttg
    13561 attttaagga tgttaaaagc aaaataagcc gccgttgtct tacccttggt accggtgaaa
    13621 gctacgagtt tgagctgttt ctggggatga ccatgaaatt ccatggcaat caggctcata
    13681 gcctgcttga tgtcgtggac gatgatagca ggaatgccga cctcatagtc gatttcagac
    13741 acgtaaaaag ccagcccaac ctcgatagcc ttttccagaa attccttctt aaaggccaaa
    13801 cccttggcaa aaaagagggt cgttgggcta acagtccggc tgtcatagct gagagcgtca
    13861 aactggacat ccgtccatgt gctgtcagtc tggccattct gtttgatatg gcggaagtta
    13921 gcatccgcct tcaatatttc taatacacgt tcaattgtaa tcatgcttct attgtaaacc
    13981 tatcgaggat atttgacaag tctgggctat gtaaatagtg ggtattttga ccgtaaattt
    14041 gaatgaatat gacatttcgc cctggagtaa atttgtgcta taataggagg gattgaaaaa
    14101 ggagaagttt atgttttatt cttatctacg aacactatta acattcttgt tgtgggccat
    14161 caatggcaat attcactatc atgatagaga gaagattttg ccacaggagg aaaattatat
    14221 tcttatcgct ccgcacaaaa ccttctggga tccagtcttg cttggctacg cagctgctcc
    14281 aaagcagttc atctttatgg ctaaaaaaga actcttcaag gaccgcggtt ttggttggtg
    14341 gatttcaaaa tgtggagcct ttccaattga ccgtgacaat cctggcatgg cagccatcaa
    14401 gtatccagtt aacatgttga aaaaaagtga ccgttcgctg gtcatgtttc cttctggaag
    14461 tcgtcattca tctgagctaa aaggtggtgt ggcggtcatt gccaagtcag ccaaggtcaa
    14521 actcatgcca gctacctatg tgggtcccat gactatcaag gggctcttag ctggtgagcg
    14581 aatcgatgtg gcttttggaa atcctatcga tgtttcggac atcaagcgta tggatgatgc
    14641 aggtacagca gaagtaacta gccgaattga ggctgagttc aaacgcttag atgaccatgc
    14701 ggcatctttc caaaccaaga aaaaaccaaa tatcttgact tatatctatc gtatcccagt
    14761 tcttttgctg gttgctctta tcttgggatt gacctatgcc tttagttata ttgccagctt
    14821 cttctggcaa ccaagtactc agttggataa aaaataagta aatgaaactc gcagcttgcg
    14881 ggttttttgt attttttacg aactatatag gtggaggtaa tttatggata cgattaaaac
    14941 ttatatagaa atgcttaaag aatacaagtg gcaaattgct ctgcccgcag tggctggctt
    15001 gctaatggcg acgttcttaa tattcagcca accagccaag tctgatcaga caggcctgac
    15061 agattttccg cagaccgcac aaacttctag cagctctgac ttggtcgagg aaaccagtac
    15121 agaagcaagt gaagagccca gccagctggt tgttgatgtc aaaggagcgg tagtaaaacc
    15181 aggactctac actttagaag ctgatgcgcg tgttaatgat gcagttgagg cggctggtgg
    15241 cttgaccagt caggcagacc ccaagtctat caatctggct cagaagctca gcgacgaagc
    15301 ggtggtctat gtggccagca aggacgaaaa catctcggtg gtggctagca cgactgctag
    15361 ctctgctatg tcctcagaag aaaaaagcac aagtcaggtc aatctgaata cggcgaccga
    15421 ggctgacttg cagaccattt ctggtattgg tgccaagcga gcgacggaca ttatcgccta
    15481 tcgtgaggcc aacggtggct tcaagtcggt ggatgacctc aacaatgtgt cgggcatcgg
    15541 cgacaagact atggaaagca tccggcctta tgtcacggtt gagtaagctc ccctgccagc
    15601 ccgttcacct ggcagtcttg gcggtggcag cttactttgc agtccactct ttttccctct
    15661 tgacaatggg cctgctgagt ttgttgttgc tggtctttgg atttcggcaa ggtaaggcag
    15721 ttttcatcaa aacgctgccg cttttagccc tatgtggtct gtttttcgga taccaaaagg
    15781 tccaatggga gcgggcagac cagttagccc cagagcaagt gacgactatg caggtcattc
    15841 cagatacgat tgaagtcaac ggggatagcc tgtccttccg cggtcgggct gacggacaaa
    15901 cctatcaggt tttctataaa ttaaccagtc aggaggaaca gacctatttt caaaagctga
    15961 caggtttggt ccagcttgaa gtggaagcag agatcagcct gccagcaggt cagcggaatt
    16021 tcaagggctt tgactatcag gcctatctga aaacacaggg tatttatcgg acggtcaaga
    16081 ttacggcaat caagaagatt gtcccagtcc agtcttggaa tgtctttgac tggttgtcaa
    16141 actggcggag gcaggccttg gtctatgtca aaaccaattt tccggctccc atgagccact
    16201 acatgacagg gcttttgttt ggggagctgg atagtgagtt tgaccagatg agtgacctct
    16261 attccagttt gggtatcatt catctctttg ccctgtctgg tatgcaggtg ggctttgtca
    16321 tcgacaagtt tcgctggatt ttactgcgtt tgggcttgac caaagaaacg gttgataaat
    16381 tacaaattcc cttttccctt gtctatgcga gcttgacagg tttttccgta tcggtggtgc
    16441 ggtctttggt tcaaaaaatt ttgggtaatc tgggcttgcg gaagttggat aactttgcgg
    16501 tgacagtttt tgtctgtctg ttgatactgc cccgatttct gctgacagct ggtggtgtcc
    16561 tgacctttac ctatgctttt ttgctgacgg tttttgattt tgaggacttg gggcaggtca
    16621 aaaaggctgc ggtggaaagt ctcagtattt cacttgggat tttgccagtg ctcatgacct
    16681 atttctatgc ctttcagccc ctgtctatcc tcttgacctt tgccttttct tttgtctttg
    16741 atgtcctact cttgccaggc ttgtcagtca tttttctcct gtcgccaatc gtcaagatta
    16801 cttgggtcaa cggatttttt gtctttatgg aaaaaatcat tgtctgggtg gcggatttgg
    16861 gattgcgacc ttggatactg ggcaagccgt ctgagctggt ccttttgctc ttgctggtca
    16921 gcctcttctt actctacgat ttccacagga gaaagaaatg gcttctagga ctgagcttgg
    16981 tcctcgctct gctatttttc ataaccaaac acccgctgga aaacgaggtg acggtggtgg
    17041 acatcgggca gggggacagc atctttttgc gggatatgcg ggggcggacg gtcctgattg
    17101 atgtgggcgg acgagttgat tttgcggcca aggaagcgtg gcaggagcgg tctcggcagg
    17161 caaatgcaga gcggactttg attccctatc tgcatagtcg gggtgtggat aggattgata
    17221 gtttagtcct gacccacacc gacacagacc atgtggggga tgtgctggaa gtggcgaagc
    17281 aggtccagat tggtcggatt tacgtgtcgc cgggaagcct gacggtgcct gactttgtag
    17341 ccaccttgaa agaaattaat gtccctgttc atgttgttga ggtgggcgaa cgcttaccaa
    17401 tttttgactc ttacctggaa gtcctttatc cagatgggac aggagacggt ggcaataatg
    17461 actccattgt cctttatggt cgcttgctga aaactaattt tctctttaca ggggacttgg
    17521 agcaggggga gttggacttg atagaatctt atcctaacct gcctgtcgat gtcctcaaag
    17581 ccggtcacca cggctccaaa ggttcttcct atcctgaatt tttggaccat atcgaagcca
    17641 agattgcctt ggtatctgct ggagaaaaca accgctacaa gcatcctcac caagaaacct
    17701 tggaacgatt tgatagtcgc aatatccaag tctatcgtac agaccagcaa ggagccattc
    17761 gcttccgagg ttggagggag tggaggattg aaacggtgag gaggtaaaat gataaatcct
    17821 atgcacttat ggttctatag tttcaaagtt tatgtgctcg ctgccttatc tggctatatt
    17881 ctgcactatg ttactacgcc agcttctgtt aacgacttca aagaggttgc tgccttattg
    17941 gaaagatgct aacaatctgt gattgtagca gattgggcta tctcagtcag cagtcttgct
    18001 cattccattg tatttcaaat agtctatatt ttgaatttaa gaattgattt tcatttcttt
    18061 tcattaaata ttgaaatcgt tttcggattt gtgatataat aaagtatgat ttaccaaagg
    18121 aggaagtcct atgtctgtta aagattttat gacccgtaaa gttgtttata tttcaccaga
    18181 tacaaccatt gcacacgctg cagatattat gcgtgaacag gatttgcacc gtctacctgt
    18241 tattgaaaat gataagttgg ttggtttggt cactgaggga acaatcgcag aagctagtcc
    18301 atcgaaggca actagcctat ctatttacga gatgaactac cttttgaata agactaaggt
    18361 caaggatgtg atgattaaga atgttatcac agtctcaggt tatgctagtc ttgaagatgc
    18421 tgcttatctc atgtataaaa acaaagtggg gattcttcca gttgttgaca acggccaact
    18481 atatggggtc attactgatc gtgatatttt tgcagctttt cttcatgtct caggttatgg
    18541 agaagaagga gtacgcgctc ggttccttgt tgaaaataag gcaggggagt tagaaaaaat
    18601 tattcgattg gtggcagata aggattataa tattgtatct actgtgcaac ttgctaccaa
    18661 gtctggaaaa gttgtcatcg aagtgcagat tgacggaaaa gttgatgttg aagaagttcg
    18721 aactcttttc gaaggtgcag gtatccaagt ggatagcttg gttccgactg ttgctaaaaa
    18781 tatttaaaaa ccgagatttc tcggtttttt tctttagcta tcattctagt attttagggg
    18841 aatgtgatat aataaagtat atcacgtatg aggaggctct atggggcaca aatataaaaa
    18901 gtataagaaa tatggtaaaa ataattcagg acttg
//
LOCUS       DASGBY010000026        18930 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.026, whole genome shotgun sequence.
ACCESSION   DASGBY010000026 DASGBY010000000
VERSION     DASGBY010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18930
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.026"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(11..628)
                     /locus_tag="U1396_000719"
     CDS             complement(11..628)
                     /locus_tag="U1396_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEM5341924.1"
                     /translation="MKIIKLFFSIKVYLWLVLSFLLLLCGVWGYGYISGEKSNQQEVS
                     IHTAIESVEQVNELVFLNTAVQKIVTAKNYTVLFGQEMPFSEKSALLIIKYKAKFGIK
                     SPVSIEHLSENRYKITLPAFKVIGLELDAEEPYTLYDKSGEILSFATEEIDTAQLITD
                     EFQSAEQETFLADYQDDIKESAKTYYQNLFSAISPEIQLEFVFKE"
     gene            complement(800..3253)
                     /gene="parC"
                     /locus_tag="U1396_000720"
     CDS             complement(800..3253)
                     /gene="parC"
                     /locus_tag="U1396_000720"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEM5341925.1"
                     /translation="MSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRI
                     LYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH
                     GNNGSMDGDPPAAMRYTEARLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFP
                     NLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI
                     IQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVR
                     VNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDN
                     FTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRLHIVEGLIRVISILDEVIALI
                     RASENKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLA
                     AIIGDERTMFNLMKKELRVVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTK
                     AGYIKRTSPRSFNASTLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELT
                     DIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGTYFAVTQYGQIKRVERKEFTPW
                     RTYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEVPIIGAKAAGV
                     KAVNLKDGDVVVAAFISNTSSVYLLTQRGSFKRMATEEIPVTSRAKRGLQVLRELKAK
                     PHRVFAAGPVLTDQGDFDLFSTANEDETTSQILHVQSKTGKLYEVDVTQLSLSERTSN
                     GSFISDTISDEEVFRAWID"
     gene            complement(3454..3906)
                     /locus_tag="U1396_000721"
     CDS             complement(3454..3906)
                     /locus_tag="U1396_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341926.1"
                     /translation="MIKFLRKKLTIEQLKKVPYASQYTEVLRSIWRADVPKYGISSTL
                     QGELLRQLEKLRWEAQANGNVNWCEEHSNYCRFIKETLYKGKVLSSQQKQELVLIMDY
                     LKSCGEYAQAYQENLIDDEELEIEKLAYVDDNLYDRVGDMIAFFYQRT"
     gene            complement(3909..4403)
                     /locus_tag="U1396_000722"
     CDS             complement(3909..4403)
                     /locus_tag="U1396_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HEM5341927.1"
                     /translation="MPKLTDRFQKRLSEWARKRKPFKNKQELEEKFDQALKIWQSSKT
                     RQHAENLLSEQGKLEHFLHSTERKLSRMPFGGDKFAAIPGLISMVRSYIRRDYSKLPK
                     GTILAIIGALIYFFSPIDALPDFILGAGLLDDAFVLNACLKLIKTDVDDFRSWQASQW
                     KVDE"
     gene            complement(4436..5038)
                     /locus_tag="U1396_000723"
     CDS             complement(4436..5038)
                     /locus_tag="U1396_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002395946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM5341928.1"
                     /translation="MVLENKLGIENSAELARLEEQISKKKAAQLFETGQLFQIEVGTF
                     AGLAHIHQTLFEEIYDFSGKIRDVNIAKDNFQFAPRIFLEQSLAYIDKLPHETFDEIV
                     EKYADMNIAHPFREGNGRSMRIWLDCMLRDSLGKVVDWNSIDKDEYFNAMVRSHVSTG
                     ELKYLLLQALTEDLGQATYFKGIDHSYYYEGYNLYRTEDL"
     gene            complement(5062..7011)
                     /gene="parE"
                     /locus_tag="U1396_000724"
     CDS             complement(5062..7011)
                     /gene="parE"
                     /locus_tag="U1396_000724"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEM5341929.1"
                     /translation="MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHM
                     VWEIVDNAVDEALSGFGDRIDVTINKDGSLSVSDRGRGMPVGMHATGKPTVEVIFTVL
                     HAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLE
                     KIGTAPKSKTGTKVTFMPDDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE
                     QEEYHYENGVQDFVSYLNEDKETLTPVLYFEGEDAGFQVQVAMQYNDGYSDNILSFVN
                     NVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPE
                     EHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAA
                     RKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQ
                     AILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDVNYDKIIIMTDAD
                     TDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKTEKIAYAWSDGELED
                     LRKDFGKGFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSVLMGD
                     KVEPRRKWIEDNVKFTLEEATAFTK"
     gene            7154..7798
                     /gene="plsY"
                     /locus_tag="U1396_000725"
     CDS             7154..7798
                     /gene="plsY"
                     /locus_tag="U1396_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEM5341930.1"
                     /translation="MLVNLILLFIAYLLGSIPSGLWIGQTFFNINIREHGSGNTGTTN
                     TFRILGPKAGTIVFVIDFLKGTLAALLPLIFHAQGISPIVFGLMAVLGHTFPIFAQFK
                     GGKAVATSAGMLPGVAPAFCLYLVIIFVTSLYLTSMVSFSSVLAAALAILGALLFPAI
                     GIILPSYDWLFTVIIVFLGSFVIIRHKENIQRILKKEENLVPFGLNLTKQKKRA"
     gene            complement(7808..11461)
                     /gene="addA"
                     /locus_tag="U1396_000726"
     CDS             complement(7808..11461)
                     /gene="addA"
                     /locus_tag="U1396_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HEM5341931.1"
                     /translation="MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVL
                     VSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERIEKNLNETIAET
                     MDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
                     KEVFDQLFADYLEQDENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWL
                     KEQAVQADLYSQERIELILEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANV
                     EEVLDLLTGLDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFKEEYNAG
                     KSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEF
                     GDIGHFAIRILEENVDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGD
                     IKQSIYRFRQADPMIFQEKFELYQADSQAGKLILLKENFRSQIEVLEATNAIFTRLMD
                     RQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETPLTAGEI
                     EVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSL
                     EVMIMLDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQ
                     TNGQHPELMSGELKKKIKDFLSILENWRAFAKMHSIYDLIWKIFNEKFYYDYVGALPN
                     GSKRQANLYALGLRANQFEKTGYKGLSRFIVMIDRALANDKDLADVQEFLPQNAVQLM
                     TIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQV
                     RVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAEKKLYLVGKGNADKLAKKYDGKK
                     ADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTEEKIGKLTLKSKL
                     EDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSLRTPSQIKKLYEPILEQEG
                     MEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAV
                     HAEQAIKDKINVQMILDFFDTDLGREILANTDKLHREAPFASLQTDSVSQENFVLRGI
                     IDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCHLILL
                     GGERIEVVEVKVN"
     gene            complement(11461..14727)
                     /gene="rexB"
                     /locus_tag="U1396_000727"
     CDS             complement(11461..14727)
                     /gene="rexB"
                     /locus_tag="U1396_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEM5341932.1"
                     /translation="MKLVYTDIRNPLTQYLTDTSAEFAKEAKRVFYIAPNSLSFEMER
                     KVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQPLDDVGLAMIFFRVLSQFEDGDL
                     KVYGRLQRDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
                     ESFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILI
                     GVYASKKAVQVIYAEGNVYQANVDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEA
                     YYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHIHQGARYKDILLLLGDV
                     DSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSG
                     LYASISQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVVKEKRLVYDLAVLE
                     PLRAKIMEPLNQLFKAGPQSGATLLEKFMAFLEAIEFPKNMEKMSRNLSEVEQEKEEQ
                     VWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVKSYDLIE
                     PHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHA
                     AMMSLLNAATEQLVISTPQIYNEGEDSLSPYVKILKEMGLSSEERGRIKSLSPQDIGH
                     YKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKKLESQGIEIPTITGDITSKQL
                     AADTLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLH
                     RIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSAT
                     ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKS
                     SDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQDPIIKLKDTKNLE
                     QLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDI
                     LAGRFAINPYTKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD
                     "
     gene            complement(15018..18823)
                     /locus_tag="U1396_000728"
                     /pseudo
     CDS             complement(15018..18823)
                     /locus_tag="U1396_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775059.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
BASE COUNT         5048 a         4376 c         3725 g         5781 t
ORIGIN      
        1 aaccagactc ttactcttta aaaacaaatt ctagttgaat ttcaggtgag atagcactaa
       61 ataaattttg atagtaggtt ttagctgact cttttatgtc atcttgataa tctgctaaaa
      121 acgtttcttg ttctgctgac tgaaattcat ctgtgatgag ctgggcagta tcgatttctt
      181 ctgtcgcaaa actcagtatc tcaccactct tatcatataa ggtataaggt tcttctgcat
      241 ctaattccaa tccaatgact ttaaaggctg gaagggtaat tttgtaccga ttttcagaaa
      301 gatgttcaat ggatacagga cttttgatgc caaattttgc cttgtactta atgattaaga
      361 gggctgattt ttctgagaag ggcatttctt gaccaaataa gaccgtgtag tttttagcgg
      421 tcacaatttt ctggacagct gtatttagaa ataccaattc attgacttgc tcgacagatt
      481 caatagccgt atggatactc acttcttgct gattactctt ttcgccagaa atgtagccgt
      541 atccccatac accacacaat aacagaagaa aggacagaac aagccataga tagactttta
      601 tactgaaaaa taatttgata attttcatag catttacctc ctctacagta tagcaaaaag
      661 actgctttac aggcctcgat tagtaccaac cagtcagctg gtgaagccag tcctcaaagg
      721 taggaaagac tttcatggca aggactatca gtactaagat agtgaacaaa ataaggaatt
      781 tctttttcat tctaaatacc taatcaatcc aggctctgaa gacttcttca tcggaaatgg
      841 tatccgaaat gaagctgccg ttgctagtgc gttcagacag gctaagctgg gtcacatcaa
      901 cctcatagag tttgcctgtt ttggactgca cgtgaaggat ttgacttgtc gtttcatctt
      961 catttgctgt gctaaagagg tcaaaatccc cctggtccgt caagactgga cccgccgcaa
     1021 agacacggtg aggcttggcc ttgagttcgc gaagcacctg caaaccacgc ttggcacggc
     1081 tggtcacagg gatttcctcc gtcgccatcc gcttaaagct accacgctgg gtcagaagat
     1141 agacagagct tgtgttgctg ataaaggccg caaccaccac atctccatcc ttgaggttga
     1201 ccgccttgac accagccgcc ttggcaccga tgattggcac ttcttcgatg ttaaatcgca
     1261 gagcatagcc cttttctgtc atgagcatga tgtcatccaa gactacaggc gatacagtaa
     1321 tgaccacatc ctctgcatct ttgagtttag catacttggt tgacttggac ttgtaagtcc
     1381 gccaaggagt aaactccttc cgctccacac gcttgatttg accgtattgg gtcaccgcga
     1441 aataagttcc ctcttcaaaa ttctccacca attcagcgaa gataatttct tcactggtat
     1501 caaagttcat gagagtctgg ctcaggtgtt caccaatatc cttccaacga atatctgtca
     1561 actcatggac aggtcggtag atgacatttc caagattggt aaagagcaat aggtgctggg
     1621 ttgtcttggc attctgcaag aaaatcagct ggtcgtcgtc ccgcttgccc atttcttcca
     1681 acgttgaggc attgaaagaa cgcggacttg tccgtttgat ataacctgcc ttggtcacgc
     1741 tgacaaaagt ttcttcttcg acaatcaagc tggcggtgtc aatctcaatc gtttctgcct
     1801 gatcttgtaa ctcactcaaa cgaggattgc caaattgttt cttgaccaca cgaagttctt
     1861 tcttcataag attaaacatg gtccgctcat cgccgataat ggctgccaag gtctgaatct
     1921 gctcgcgtag ggctgcttct tcgttttcca aggtaacaat gtcggtattg gtcaagcggt
     1981 agagttgcaa ggtcacgatt gcttctgcct gttcctcact aaaatcatag ctgactttca
     2041 agttttcctt agcgtcagcc ttgttttcag aagcacggat aagagcaata acctcgtcca
     2101 agatggaaat gacacgaatc aaaccttcta cgatatggag gcgtttttct gccttttcct
     2161 tgtcaaactt agaccgagca atgataatct cacgacggtg ggcgatatag ctagacaaaa
     2221 tcttctgcaa gccaacctga cgcggtgtga aattatcaat agccaccatg ttgaagttgt
     2281 aattgatttg caagtcggtg tatttgtaga ggtagttgag aatggtctgc tcatcgctgt
     2341 cttttttcag ctcaatggca atccgaagac cagtacggtc tgactcatca cgcacctcgg
     2401 caataccagg caccttgttg ttgacacgga catcatcaat cttcttgacc aaaacagcct
     2461 tgttgacctc gtaaggaatc tcagtaatga caatctgttt cttgccagcc ttaagttgtt
     2521 caatttcaca acggctacga acaacgacac ggcccttacc agtttcatag gctttcttga
     2581 tttcgtcagc cccttggata atggcacctg ttgggaagtc tggtccaggc aagaactcca
     2641 tcaacttttc taacttagct gttggatgat caatcatata gacaacggca tcgatgacct
     2701 ccgctagatt atgcggcggg atgtcagtcg cgtaccctgc tgaaattcct gtcgctccat
     2761 taaccaagag attagggaag gcagctggta gcacagtggg ttctttttcc gtatcgtcaa
     2821 agttccaggc aaatggcaca gtctttttct cgatgtcggc cagcagataa ccagccattt
     2881 cagacaggcg agcctcggtg taacgcatgg ctgctggcgg atcgccgtcc atggaaccgt
     2941 tgtttccgtg catctccacc aaaatctcgc ggttcttcca gtcctgactc atgcggacca
     3001 tggcatcata aatagaggaa tcaccgtgcg ggtggaaatt ccccatgata tttccgactg
     3061 acttggcgga cttgcggtaa cccttgtcaa aagtgttgcc gtccttattc atggaataaa
     3121 gaatccgacg ttgcacgggc ttgagaccgt cacgaatgtc cggcagggcc cgctcctgaa
     3181 taatgtattt ggaatagcga ccaaaacgct ctcccatgat gtcctcaagg gacatgtttt
     3241 gaatgtttga cataaattaa gatacaaagg gacgattcag tcccgtgttc agttagacag
     3301 actagctgaa cattcctttc tttgtttctt ggtggaaagt taaattttct ttctttttta
     3361 cttttttgat aatcacctta agtagtggga acggaagaga ccttatatag caatttctgt
     3421 tgctatatcc ttaactaaac attagttctt tacctaagtt ctctgataaa agaaagcaat
     3481 catatcccct actctatcat aaagattatc atcaacatat gctaatttct caatttctaa
     3541 ttcctcatca tcaatcaaat tttcttgata agcttgagca tattcaccac acgattttag
     3601 ataatccatt attaaaacta actcttgctt ctgttgagaa gaaaggactt ttcctttata
     3661 gagagtctcc tttatgaatc gacagtagtt tgagtgctct tcacaccaat tgacattgcc
     3721 atttgcttga gcttcccagc gaagtttttc taattgtcga agtaattcac cttgtaaagt
     3781 agaagaaatc ccgtatttag gcacatctgc tcgccaaatt gaacgtagaa cctctgtata
     3841 ctgagaagca taaggaactt tcttaagttg ctcgatagtt agcttttttc ttaaaaactt
     3901 tatcatagct actcatccac tttccactgg cttgcttgcc agcttctaaa gtcatcgaca
     3961 tctgttttga ttaatttcaa acaggcatta aggacaaagg catcatcaag tagacctgct
     4021 ccaaggatga aatctggtaa ggcatcaata gggctgaaaa aataaatcaa agcacctata
     4081 attgcgagga ttgtcccttt gggtaacttg ctgtaatctc tacggatata gcttcgcacc
     4141 atggaaatca agcctggaat ggccgcaaac ttatctccac caaaaggcat acgagacagt
     4201 ttccgttccg tgctatgtaa aaaatgttct aattttcctt gctcagatag caagttttct
     4261 gcatgttgcc gagttttgga agattgccaa atcttcaatg cttggtcaaa tttctcttcc
     4321 aactcctgtt tgtttttaaa tggcttgcgc tttcgagccc attcagacaa ccgtttttga
     4381 aaacggtcag ttaattttgg cataaaacac ctcacatagt ttgcttgtgc tagagttaca
     4441 aatcctctgt gcgatagaga ttgtatcctt catagtaata agaatggtcg atgcctttga
     4501 aataagtagc ctgaccaaga tcttccgtta aggcttgcaa taacagatat ttaagctctc
     4561 ctgttgacac atggcttcta accattgcat tgaaatattc atctttatca atgctattcc
     4621 agtcaacaac cttacccaaa ctatcccgta gcatacaatc caaccagata cgcatactgc
     4681 gtccatttcc ttctcggaat ggatgtgcaa tgttcatatc tgcatatttt tcaacgattt
     4741 cgtcaaaggt ttcatgaggt agcttgtcga tataggccaa agactgctcc agaaagattc
     4801 gtggagcaaa ttgaaaatta tccttggcaa tattaacgtc gcgaatctta cctgaaaagt
     4861 cgtaaatctc ttcaaacaag gtctgatgaa tgtgtgccaa acctgcaaag gttccaactt
     4921 ctatctggaa taactgacca gtttcgaaca gttgagctgc ttttttcttg ctgatttgtt
     4981 cttcaagacg agctaattca gccgaatttt caatccccaa tttattttct aaaaccatat
     5041 ggcacctcaa cttccctgag attatttagt aaaagctgtc gcttcctcca aggtaaactt
     5101 cacattgtcc tcaatccact tgcggcgtgg ctcgaccttg tcgcccatga ggacagatac
     5161 acggcgttca gcacgggcca ggtcttcaat ggtgacacgg atgagggtac gggtttcagg
     5221 gttcatggtt gtttcccaga gttgatcggc attcatctca ccaagaccct tgtagcgttg
     5281 gaggataaag cccttgccaa aatccttgcg gagatcttct aattctccgt cagaccaagc
     5341 ataagcaatc ttttctgtct tgcccttgcc ttttgacatc ttataaagtg gcggaagggc
     5401 gatataaacc cgtcctgctt ctactaacgg tcgcatatag cgatagaaga aagtcagcaa
     5461 gagagtctga atgtgggcac catccgtatc cgcatcggtc atgattataa tcttgtcata
     5521 gttgacatct tccagcgtaa agtctgaacc aacacctgca ccaatggtgt aaatcatggt
     5581 attgatttct tcgtttttga ggatgtccgc catttttgcc ttggcggtat tgataacctt
     5641 accacgcaaa ggtagaatgg cttgaaactt gcggtcacgg ccttgtttgg cagaacctcc
     5701 ggccgaatct ccctcgacca gatagagttc atttttggct ggatttttgg actgggctgg
     5761 agtgagtttc cctgacaaaa ggcccttatc cttcttgttt ttcttaccgt ttcgggattc
     5821 gtcacgggcc ttacgagcgg cctcgcgggc gtcacgcgcc ttaatggctt tacgaactag
     5881 atttgaagct aattccccat tttccaaaag gaagaatgtt aacttgtccg atacaatgcc
     5941 gtccaccacc ggacgagcaa gtgggcttcc caacttgtcc ttggtctgcc cttcaaactg
     6001 caaatgctct tctggcacaa ggatagaaag gaccgcagac aaaccttcac ggtagtcaga
     6061 gccttccaag ttcttgtcct tttccttgag caagttggtc ttgcgggcgt agtcgttcat
     6121 agccttggta atggctagtt tgagacctgt ttcgtgggta ccgccgtcct tggtccgaac
     6181 gttgttaaca aaggacagga tgttgtctga ataaccgtcg ttgtactgca tggccacttg
     6241 aacttggaat cctgcatctt ctccttcaaa atagaggact ggtgtcagag tttccttgtc
     6301 ttcgttgagg taggaaacaa agtcctgaac gccattttcg tagtggtact cctcctgctc
     6361 acctgttcgc tcatctgtca gagtcatggt gacttgtttg agcaagaagg ctgattcttt
     6421 caggcgttcg gcaatggtat tgaacttgaa gtccgtcgtt gaaaagatgg tatcgtcagg
     6481 cataaaggta acttttgtac ctgtttttga ttttggagcg gtgccaatct tctctagggt
     6541 cgtgactggc tttccgccct gctcaaaccg ttgcttgtaa acagctccgt cacgggtaat
     6601 ctcaacttcc aaccagctag acagggcatt gaccaccgaa gaaccaaccc cgtggagacc
     6661 acctgaagtc ttgtagccac cttgaccgaa cttacctcct gcgtggagaa cggtgaagat
     6721 aacttcgact gttggtttgc ctgttgcgtg cataccaaca ggcatcccac gtccacggtc
     6781 ggaaacagac aggctaccat ccttgttaat agtcacgtca atccgatcac cgaaaccaga
     6841 caaggcttca tcgacagcgt tatcgacaat ctcccagacc atgtggtgaa gaccattccc
     6901 gtctgttgag ccaatgtaca ttccagggcg tttgcgaacg gcatctaggc cttccaatac
     6961 ctgaatggca tcatcattgt aattatttat atcaatctct ttcttagcca aaattgacct
     7021 ccatacttat catcctttct atattacaag ttttttagca tttttgcaaa atatttctgt
     7081 tacctatcgg ctgagacaac tcacaaaata agattttgga ctaaattaga tgaaaatatg
     7141 ctataatgaa aacatgttag tcaatcttat tttactattt attgcatatt tgttgggatc
     7201 tatcccgtca ggactttgga taggtcaaac ttttttcaat atcaacattc gtgaacatgg
     7261 ttcgggaaat actggaacaa ccaacacatt ccgtatttta ggtccaaaag ctggtacgat
     7321 tgtatttgta attgattttc tcaagggaac gttggcagcc ttgcttccgc tgatctttca
     7381 tgcccaagga atttctccga ttgtatttgg gttaatggct gtactggggc acactttccc
     7441 tatctttgcc caattcaaag gtggaaaggc ggttgcaaca tctgctggta tgcttccggg
     7501 cgtcgcacct gctttctgtc tctatctagt catcattttt gtgacttctc tttacctcac
     7561 ttcgatggtt tccttctcta gcgtcttagc agcagcttta gcaatcttag gagctctgct
     7621 atttccagca ataggaatca tcctgccaag ctacgactgg ctctttacag tgattatcgt
     7681 ctttcttggc agttttgtca tcatccgtca caaggaaaat atccagcgga ttttgaaaaa
     7741 agaagagaac cttgtcccat tcggactcaa tctaaccaaa cagaaaaagc gagcttagta
     7801 ctcgctttta gtttaccttg acttcgacca cttctattct ctccccacca agcaaaatca
     7861 aatggcagtc tacacgatct atcttgtagg cttttttcaa tgcctcggca tagagttgca
     7921 tttgagcttg gtaacgttgg ctgagttggc ttggttggtc atatttgtct gtcttgtaat
     7981 caaagaggac aatatgatca tcatatagta ggtagccatc tataatccca cgaaggacaa
     8041 agttttcctg agatacagaa tctgtctgca aacttgcaaa tggtgcttct cggtggagtt
     8101 tgtccgtatt ggctagaatt tctcttccta agtctgtatc aaagaaatcc aaaatcatct
     8161 gaacattgat tttatcttta atcgcttgct cagcatgaac agcttctagg gcttctctta
     8221 ccgtatcttc tgtcaccaac caagacagat ccaagcgttg catgagttca tgcactgctg
     8281 aaccgacttg ggctccagtg attttaggtt tcttggagaa atctggcaag ttgaaggtcc
     8341 gttttggctg gtatttttcc ataacttcca tgccttcttg ttccaaaata ggctcataga
     8401 gtttcttgat ttgacttgga gtccgtaaac ttggcaattc aatggcaacc ttatagcgtt
     8461 cgttcaactc ttgaacagaa gacaactggt ccaaggcctg agcaatgtct tctgattgac
     8521 gaatatcttt aaggctggca tcttctagct tactcttcaa tgtaagtttt ccaatcttct
     8581 cctctgtcaa atcctcatcc gtcacaaaga ctttcttgaa gtgcaagtct tctcctgaga
     8641 aggcctcatc aatggctaga atccagtctt ggaaggtcgc cacgctttca cgagttgatt
     8701 gggctagtac gccatctgcc tttttgccat cgtatttttt agctaactta tcagcattgc
     8761 cctttccaac cagatacagc ttcttctcgg cacgcgttag tgcaacataa agcaaccgca
     8821 tttgttctga aagattggca atttttagct cttggagatt atcttgataa ggaagggtgt
     8881 tcattaagac tcgcacctga ggtaatgggc tattcacctt atctttcata tccgctaaat
     8941 attggatacc tagaccattt ttccggctga tgatgactga ctggtaatgg tcttccaagt
     9001 tgaatcgttt atcgatgttc atgaggaaga catatttgaa ctctagacct tttgacttat
     9061 gaatggtcat cagctgaaca gcattttgcg gtagaaactc ttgtacatct gccaagtcct
     9121 tgtcatttgc taaggcacgg tcaatcatga cgatgaaacg agacaagccc ttgtagcctg
     9181 ttttttcaaa ctggttggca cgcaaaccta gggcatatag atttgcctga cgcttgctgc
     9241 catttggaag agcaccgaca tagtcatagt agaatttttc attgaaaatc ttccaaatca
     9301 ggtcataaat agaatgcatt ttggcaaaag cacgccagtt ttccaaaata gataagaaat
     9361 ccttgatttt cttcttcaac tctcctgaca taagttcagg atgttgccca tttgtttgct
     9421 gggctatttc cattttctgg taaaagaaac ctgtcccagc ctgcaaggaa atccgtgtca
     9481 gctcatcctc atcgaatcgg aacataggcg atttgagaag agcaaccaag gcatagtcat
     9541 tgagtggatt attgataacc cgcaaggtat ccagcataat catgacttct aaagattgca
     9601 gataggaggc tgctccgcca tctgccacaa ttggaatccc atgtttttca aaaatggata
     9661 taatgaggtc attgtgcgtc cgtttttgca ccaagagagt gatgtccttg aagtctgctc
     9721 cttcttcatt gtgaagacga ataatctctt ttgcaacaac ctcgatttca ccagcagtca
     9781 gaggtgtttc ttcctcagca tccgttgaag agtttgcgct atcctgctgg tcgtaaatca
     9841 agtattccat ctcatgcttg ggctgggcaa ttttttgacc aggactacca gccactagac
     9901 tgtgggtttc atcatacttg atttccccta cttgacggtc catcaggcgc gtgaaaatag
     9961 catttgtcgc ctccaagacc tcaatctgac tacggaaatt ttccttaagc aaaatcaatt
    10021 ttccagcctg agaatctgcc tggtaaagtt caaatttctc ttggaaaatc atcggatccg
    10081 cctgacggaa tcgatagatg gactgcttaa tatcgcccac cataaagcgg ttgtgaccgt
    10141 tagacagcag gtccagcatt cgctcttggc tatggttgtt atcctggtac tcgtccacca
    10201 tgacttcgtg gtatttttct tggaaaaact ggcgaatgtc cacattttct tctaaaatac
    10261 gaatagcgaa atgcccaata tcgccaaatt caaaagctgc ttccttgatt ttgacatcca
    10321 gataagcctg cgaaaaatcc aagacaaagt cacgtaataa tatcagcatt ggcaaagctt
    10381 gaatctgata gtctttcagc agggttaatt cataaacttc ctgccccaaa tctcgtagtc
    10441 cagagataat ctggctcttg ccagcattgt attcttcttt aaaggctatc aaatgctcat
    10501 cttttggtcg attggcattg gtcagaccct tgcctctgga ctggtcgttg ataagaagga
    10561 ctttttcaac ccgctccatc aagtccttct ggtccagact atctaaacct gtcagcaaat
    10621 ctaaaacttc ttccacattt gcaaaatact tggcggaacc aaagtcattt ctgccccatt
    10681 ccacatggta gcggaagaaa tctgcagctt gatagagctt gtctaacact ttttccttaa
    10741 agccttgctc taagatcagc tctatacgct cttgactgta caaatcagct tgaacagcct
    10801 gctctttcag ccatttagtt ggactgcttg tcgattggct aaaatcatgc acctgataaa
    10861 caacctgacg gaaaccacca ttatccttcc ggttgcctga aaaattgcgt accaattttc
    10921 ggaatgcacc attttcatcc tgttcaagat aatctgcaaa gagctggtca aaaacctctt
    10981 ttttcagact cgctttttct gtctcatcct gtaaaatccg aaactgtgga gaaatgccaa
    11041 ggctataacc gtaagtcgtt accaatttct gcgtaaagga gtccattgtc ccaatatccg
    11101 ccttggtcaa atccgccaac tgggctgaca aatgccgacg caagtccata tccatcgtct
    11161 ccgcaatggt ttcattgaga tttttctcga tccgctcctt caactcacca gccgctttga
    11221 ctgtaaaggt cgagataaag agctgatcaa tccctacgcc acgcttcaac ttatccaaaa
    11281 tccgttgaac catgacgaag gtctttcctg acccagccga tgcagagacc agaacattct
    11341 gaccgtgcgt gtagatggct tcaatctgct caggtgtgcg tttttgttgc ttatcagaat
    11401 tggcttccgc cagctgcaca gccttgattt cttctgcgct taaaaattgt tcaaaagcca
    11461 ttagtcctga cctcctttca ttcgttccat ccaatcttga cgcttggcct ccttgaccaa
    11521 ccgccgtgcc atgcccatgt gccgatccgc ctcaaaacca gtgattgcct tcagctgctc
    11581 acctgccacc gaacgcccat ctttggtata agggttaata gcaaagcgac cagccagaat
    11641 gtccatggca gcttgtttgt agagttcttg gttgtggttc aataaaaccg caaactcatc
    11701 ttccgtgtag agttggttac gagtctgata aaaatgattg agccccagac tttcctcctt
    11761 caagaaaagc cccttataaa ccaagctagt attggcagct ccttctagct gttctaaatt
    11821 cttcgtgtct tttaatttga taatcggatc ctgcaaatgc aaatacatag ctccaaaaac
    11881 aggtttatcc ttggtttcat ccagctcttg taaggctgcc aagtaggtta ccaactgagg
    11941 ttttagacca ttgtaaaaat ccccaactga aaaagattgg tcgctggact tgtaatccac
    12001 aacaccaaca gcctgattga tttgtaaggt atccaagcgg tcaatggtac catttacatg
    12061 cacactcttg ccattttgaa ggtcaaaaac tagcgcctta tcctgacgga aactcttttc
    12121 ctgaccatca atttcaacca aatcattatc ccgcaaaata gtcgcactgg aacgagcaat
    12181 cttatccagc acctcctccg tataacgagc atccgcatct tggttataaa acatagcaaa
    12241 ttctgcctcg tcacgcgtac gcaggatggc cttatccact ttttgatcaa aatctagctc
    12301 agattggtcc atgaccactc gttcaaaaat ccgatgcaag aagagcccgt gttgaaaggc
    12361 cgtcggatgg atggattcct gttcccgcaa gcgaagaaca ttacggacaa agtaaagata
    12421 ttggttattg tagaaattgg tcaagctgga tgcagaaaga ttgagcggct tatcctctgg
    12481 atataaagca gccaaggtat cagctgcaag ctgtttagaa gtaatatcac cagtaatggt
    12541 cggaatttca atgccttgcg actccaattt cttcttcaaa tggcgaacca agactgtcca
    12601 gaaggccctc tgcccttccc attcttcatt atcaagagat ggtctttctg actcaatcaa
    12661 acgggataag agactcttgt agtgaccgat gtcttgcgga ctaagacttt taatccgacc
    12721 acgttcttct gacgaaagcc ccatttcttt tagaattttt acataaggag aaagactatc
    12781 ttcgccttca ttataaatct gaggagtgga aataactaac tgttccgtcg cagcatttag
    12841 cagagacatc atggcagcat ggttcttctt aatattctct cggctgacca aatcgaaacg
    12901 tgaagaactt gccgaaacaa gattgacttt ttccatctct tcttccgtca acagactggt
    12961 attcttggca acttttggaa aattggactg gcccattccg atagcataaa catactttgc
    13021 agtgtgtggc tcaatcaaat cataggattt gacattgacc acatcaaccg ttgcaggaac
    13081 ggtgcgatag tgactggcct gcatgccagc ctgtaaaata gccagaaaat catccatttt
    13141 caatttttct tttccgaaaa tctgatgaaa attctcaaga agatgggtaa aacttttcca
    13201 gacctgctct tctttttctt gctctacttc actcaaattt cgagacattt tttccatatt
    13261 tttaggaaac tcaattgcct ccaaaaatgc cataaatttc tcaagcaagg tagctccaga
    13321 ttgtggtcca gccttaaaca gctgattcaa aggctccata atcttagcac gtagaggttc
    13381 taagacagcc aaatcataga caagcctttt ctccttaacg acttcagcgt catagtccgc
    13441 tctgccattg accgaaaaag ccctcgaaaa agcagcctgc cccttcatat ccgcaaagag
    13501 gatgtaggac tcaaacaagt ccagctcctt ttgggaaatg ctggcgtaca aaccagattt
    13561 gaggagattg agcaggtctt ccgcacggaa acgatagcga cgcaagcgct ccaaggactc
    13621 cacaaagtgg actaggggat gatggctcat ctcctctgcc ttaccaaaat agtagggaat
    13681 atcatatttg tcaaaaattt tgccaatctg caacttgtag ctatccacat cacccaagag
    13741 caacaagatg tctttatagc gagctccttg gtgtatgtgt tggcgaattg ccgttgctac
    13801 ctgctccacc tcttcttttt ggttaacgac ttcccatagc tggatttttt cttgatctgc
    13861 tggagtcaag tctatcatgg tcccgctgta gtcataatag gcttccatat tctttgaaaa
    13921 tttaccaata ctgtccaaga ctggctcttg accaatataa gtagccttag tctggaactg
    13981 cgctgatagc tgacgtaaaa agtcaacgtt ggcttgatag acattgcctt ccgcatagat
    14041 gacttgcaca gctttcttgc tggcatatac accaattagg atttccgaca cccgttcatt
    14101 taaagcactt actaaagctt cttcttctgc cgaaaaacga gaaaatccgt ctaccaccag
    14161 cacaatgttc ttcaactgct catccaactg accagtttct accaagccag tcaactgtgc
    14221 taacttagac tgatgctcaa agctttcttt ggacaaaatg tctgttacag ccagaaaaat
    14281 ctttaccaaa tcagcctgct tatctggtga gtccatggct tccaagtcca aaatagacat
    14341 atttgcccgt tgcaattctt tgtataaagc aactagctgg ttaatgaaac caaaatctct
    14401 ctgcaaacga ccatagactt tcaagtcgcc atcttcaaat tgcgatagaa cacgaaagaa
    14461 aatcattgcc agaccaacat catccagcgg ttgacctgct tctttcctat caatcatcaa
    14521 atagcgggcc aattgcccaa aacgggtcac gataatatca aaagttgcct gttctggcag
    14581 gtattccaag accttgcgtt ccatctcaaa ggatagagag tttggagcaa tataaaaaac
    14641 tcgcttagct tccttagcaa attctgccga ggtatccgtt aaatactgcg tcagaggatt
    14701 gcgaatatct gtatagacta atttcatatc aaattctcat gctttcgttg aatatactat
    14761 atctagtata tcaaaataag acaaaaaaat gggagcgaga aagaactcga ccgaataaaa
    14821 aaagagctcg tctcccaccc ccacacagct ccaacagtca gagtagtgac tgttggaggt
    14881 tggaaatgga gcgaactcta agatgtaact ctggactttt tgcacagcct cattttttcg
    14941 gaaaggcaat cctgcatgtt acgtacaatt cttatacttt ctatatgggg gaataaagtc
    15001 tgtataaaga attttgacta atcttcgtta cgacgacgtt ttcttgcaaa cgcaagtgtt
    15061 gcgacaagca ttgctgtacc aagcgcacct gccacagatg aagcctcacc agtatttggc
    15121 aattgagctt tacctgaagc ggttttacct gcttgaggtt ttgcaggagt ttccttctca
    15181 ggtgttgttg gtttattaga aagtttgcga taaatatgtg tcgtgttacc ttcttcatca
    15241 actacagtac gcacatactc gtaacctgaa atttgacgtt ttggtgttgt cccatcctct
    15301 tgtggagcaa tagggttacc ttcttcatca acgtggttag tcacaacttt cttagcaggt
    15361 gttttcttgt agatgtgagt tgtgttgcca tcttcgtcag taacagtttt acctgtaaat
    15421 tcgtaacctg ggattgattt gtttggtttt gttccctctt cttgcggcgc aacagggtta
    15481 ccctcttcat caacgtggtt agttacaact ttcttagcag gtgtttcgac tttacggtaa
    15541 acgtaagtca caactgtttc accttctaca actttaccat tttctgtacc gtcaacacga
    15601 accaattcat actcttcacc tttgaaagta attgtcttag gtttgttgtc tgtagtgtcg
    15661 tatggcgtac cttctggaga agttggtgta tctgttacag gatccttgat aactgtgcca
    15721 tcttctgtta catagttaac aacaactgta ccattcttaa cttctggtgt tttcttgtag
    15781 atgtgagttg tgttgccatc ttcgtcagta acagttttac ctgtgaactc ataacctggg
    15841 attgatttgt ttggttttgt tccctcttct tgcggcgcaa cagggttacc ctcttcatca
    15901 acgtggttag ttacgacttt tttaactgga acataaggaa ttggtgtatc aacacctgga
    15961 ttttctggtg ttggtggtac ataaccctta cctggatcat ttggatcaat tggtttcaac
    16021 ggcgtgttat ccttaggatc aaccggtgta tatcctggaa cgtaaggaat atttggaacc
    16081 tcgccatttg ttcctggtgt cgttggatcg attggctcgt ctggctctgt tgggtcaaat
    16141 gggtaaggta cttttggacg gtttgtttct ggtacatttg gaatctctgg aatccagttt
    16201 gcaactttct gataaacata agttactgtg attgttcctt cgataacttt accattttcc
    16261 tcaccatctg tcttagatgg aacaaggaca tagcgtgatc catcttttgt gatgatttcg
    16321 tttggtttct tgtcagttgt agtataagca tctccaaccg gtgcatcaga cacatccgtt
    16381 tctggatctt taatcacatt accttctgta tctttgtaat ttacaactac agaacctgtc
    16441 actgctttat agacataggt aacttctttg ttaacaccag cctcaatctt gcctgttgtt
    16501 gggtcaatac ctttcgcagt attattacca acttcaatca agttatttcc cttgccaact
    16561 ttaccaaccg gataatcacc agcaggaaca agtttgtatt ccttgccttc aaaagtgatg
    16621 gaagctaatt tctgatccaa gtcggtatca taattgtaac caggtttcgc atctttttca
    16681 tctgaaacag gagctttgat tactttacca ttgatgtcaa cgaagttaac attaacgcta
    16741 ccagcttttc gtaaacatac ttaacagttg tcgtacctgc aactactgta ccggttgtct
    16801 tagctgaatc agacttaact tctttgtaga agtagactgt cccatcagca gcaaccaagc
    16861 tggctggtct acggtccaca tctgtattat actctgtgcc aagagctgac ttaggagtat
    16921 ctacaactga atttacaatt tgttttccgt cagtatcgta gtactcaaca atgacatcac
    16981 cgaatttagg atttactttg tagacatggg ttgtctctac agctgtagcc actgaagcgt
    17041 ttcggagata ttgttgggta ccaaatggaa caaaaccatt attatcaaac ttatccgctg
    17101 tacctctcca ttggttttcg gtaattccca attcttttgc agttgtccaa acctgagtac
    17161 caatatagat acgtccatac tttcctccgg tatactctgg tttagttggg tcagtttcat
    17221 ctgtgcctga ccactgtgca acgacacgat atttactacc ttgagcattg gtagcacttt
    17281 ccttgaagac catgaaacca ttatcaactg tgtaaggaga taaaatagtt gcgttgatat
    17341 tgtaatcata tacttttcga tcaatagtat aaactgttgg agatgtcttt agcagcggta
    17401 tgaatcccgt cgtatcagtc ccagtccaat ctacggtacc cgtataagtt ggatccaata
    17461 agtacaatgt cataacggat tgattatctt caacaacctc acgaatagct ttataatatt
    17521 tattaccatt tttgtcagca ccgacaccag ctagcataag tgtgccttta ggataagcac
    17581 cttgaatagc attttgcgtt gttttcacat agtcataacc agtaaaagta cgtactttag
    17641 atgaagtaac cgtctgacct gcaatagttt gaagactgta agtcgccaaa actgtgccat
    17701 cttcagtaac atagcgagtc gtattaactt gatatgcagg cactacaact gtagaatata
    17761 ctgcatctct atcatcataa aatttcaacg aacctggaat atcagcggta gctgttgaag
    17821 tatcataagt caaagtaatg ttgctattct tcgcattaat cgtcttcgga taactaaaag
    17881 tcacactatt cccagcctca agtttatggc tttctaagac ttctccatct ttagtactca
    17941 ctagctccgc tagtacagtt gatgtagctg gatccgagtc cagggaataa cgtatgtaag
    18001 cgccgacagc agttccacca acaattgaac cattctggtt ccgattgtag gaatttaaat
    18061 catatgattc aaaagtatac caaccagatt cttttgtagc ctcaacttta tctcgaagtg
    18121 tatgaggagc aattgctgca ccatttggtt cagacattga aggtgttgct gttgtcgttc
    18181 tatctagaag ggtaccttcg ccatcaccaa ctttcaatgt tgatgcagtt gtatcaggtg
    18241 ctactgtatc aagtgctgct gttaagagac catctacagt gtatttttgc aattcattcc
    18301 ctagcgcctc gttggctgct ttaaccgctg cgacttgcgc ttcaacttgc tcaacagttg
    18361 cttctgagtc agccaaaagt gccttagctg ctgcaagttt tgtttgagca tcctctatag
    18421 cttttgcaag agttgcatct tcagttttag ccaactcttt ttgaccaaga ccagccaaaa
    18481 gtggtgattc tgatgttacc tgttcaagaa cagctttcgc tttttcaact tctgttgaag
    18541 tcgtagctac tgcactcgta ttttcagctg gtactagcgt agcttcagca tttgttttat
    18601 ctacttcttc tgcaacagct tctgttgaag caggcgctac actactggca atagttggtt
    18661 ctgatgaagt aacagcttcc tcagctttaa caacctgtgt accggcacct aaaactaacg
    18721 acacaccaag caaaacactt gctgcaccaa aatgatactt acgaatcgaa aattgttgtt
    18781 tcgtgccgta ccagtcaaat gattttttat ttgctttacg cataaaaaat cccccatata
    18841 aatattaatt taattacaca aattttctac tctttgtatc aaagccttga aaactcccgc
    18901 aatcatccga ggtattatac tacaaataac
//
LOCUS       DASGBY010000027        18742 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.027, whole genome shotgun sequence.
ACCESSION   DASGBY010000027 DASGBY010000000
VERSION     DASGBY010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18742
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.027"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            10..1290
                     /gene="aroA"
                     /locus_tag="U1396_000729"
     CDS             10..1290
                     /gene="aroA"
                     /locus_tag="U1396_000729"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEM5341933.1"
                     /translation="MNLRRSVEKLKGTIRVPGDKSISHRSIIFGSLAKGVTRVHDILR
                     GEDVLSTMQVFRDLGVKIEDNGDIVEVHGVGFDGLQAPKNDLDMGNSGTSIRLISGVL
                     AGQDFEATMFGDDSLSKRPMDRVTIPLSQMGVEISGQTERDLPPLTIKGNKNLKPIRY
                     QLPVASAQVKSALIFAALQAEGESVIVEKELTRNHTEDMIVQFGGQLEVNGKEIRIQG
                     GQEFIAQEITVPGDISSAAFWLVAGLIVPGSKIVLENVGINETRTGILDVIKAMGGKM
                     TLSNIDELAKSATITVETSELKATEIAGELIPRLIDELPIITLLATQAHGTTIIRDAE
                     ELKVKETDRIQVVADALNSMGATIEPTEDGMIIHGPTALHGAEINTFGDHRIGMMTAI
                     AALLAKDGEVVLERAEAINTSYPAFFEHLNSLMD"
     gene            1299..1790
                     /locus_tag="U1396_000730"
     CDS             1299..1790
                     /locus_tag="U1396_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM5341934.1"
                     /translation="MPIVLLGFMGVGKTTTAHLLNLPVYDMDHIIEERIGMPIADYFS
                     LEGEASFRQLETEVLKELLDLPSNCIVSTGGGVIKSEVNRELLLANREDNVLFTASFE
                     VSYQRIRKDRQSQRPLFLQCSKEEFEALYRERMALYQGLADTVIDTDKLNPEQVARKI
                     LCK"
     gene            1781..2608
                     /gene="pheA"
                     /locus_tag="U1396_000731"
     CDS             1781..2608
                     /gene="pheA"
                     /locus_tag="U1396_000731"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEM5341935.1"
                     /translation="MQVAYLGPRGSFTHQVAQQAFPSADLQAFETITEVIKAYETGEV
                     TYSVIPVENSIEGSVHETIDYLFHQAEIHAVAEIVQPIAQQLLATSADKAVEVIHSHP
                     QAIAQGKKYIQEHFPQARIEITASTAYAARFVAEHPEQPFAAIAPQAAAVEYGLEVIA
                     QDIQEISENFTRFWILGDKAPSIALEQVAKKVSLALTLPDNLPGALYKAMSVFSWRGI
                     SLTKIESRPLKTALGEYFFILDLDNQSEELLAYSQKELTSLDITYKVLGNYLVYMTS"
     gene            2620..3942
                     /locus_tag="U1396_000732"
     CDS             2620..3942
                     /locus_tag="U1396_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000032347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5341936.1"
                     /translation="MNKNNNILTHHEQLRLDYLQKNIHYLNDKESRELDYLLYKKELR
                     ERHGSPRQSLRSFTPTAYEDDFEEDYFEEDDEQEELLPRYPERKSRKTRQAKPQRFQS
                     PRIEPKVKVPKPKKARKKGGFKRFIGFVLLAIVLVIVAMGYSFFKGMNSVSEKPVAEV
                     FNGVDTSNGTNILILGTDGRVGESSGETRTDTIMVLNVNNTDNKVKLVSFMRDTLVDI
                     EGYEYKLNTAYTLGEQDNQQGAEEVRKALKNNFDIDIKYYAMVDFATFATTIDTLFPE
                     GVTIDAQFSTINGEVVSSVEVPNDLQLEENAPAYQTIQVGVQQMDGKTLLNYARYRSD
                     DEGDFGRTRRQQEVLSAVMTQAKNPMKLFSGSEAIGKVVAMTPTTVPQSFMWLQGPGL
                     LLDAANGIERVTIPENGDWIDDYDMYGGMALRVDFEKYQQRLAELGLR"
     gene            4009..5370
                     /gene="rlmD"
                     /locus_tag="U1396_000733"
     CDS             4009..5370
                     /gene="rlmD"
                     /locus_tag="U1396_000733"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM5341937.1"
                     /translation="MLKKNDIVEVEVVDLTHEGQGVAKIDGFVFFVDNALPGEKISMR
                     ILKLKKNIGFGKVEQWQSFSPDRNQDLDLTYLRTGIADLGHLTYPAQLAFKKKQVENS
                     LRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFY
                     IQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLMLVLVTTRPK
                     IFRVETLIERLTSQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETITDTMLGNEFEI
                     SAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTVGLSFAKQVKHVYGVEV
                     VEKAVLDSQKNAARNGIDNVTYVCDSAESTMQKWVADGVKPTVIFVDPPRKGLTESFI
                     KASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQPTDLFPNTHHVECVVLLQR
                     SNG"
     gene            5581..5721
                     /locus_tag="U1396_000734"
     CDS             5581..5721
                     /locus_tag="U1396_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017370817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341938.1"
                     /translation="MKKKEQSSRQIVICHLVTILGVDIVKTTQLIDEFGNVGILVLEG
                     QS"
     gene            5718..6521
                     /locus_tag="U1396_000735"
     CDS             5718..6521
                     /locus_tag="U1396_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator protein A"
                     /protein_id="HEM5341939.1"
                     /translation="MKRITANQYQTSERYYKLPKVLFESERYKDMKLEVKVAYAVLKD
                     RLELSLSKGWIDEDGAIYLIYSNPNLMALLGCSKSKLLSIKKTLREYGLIDEVQQSSS
                     ERGRMANKIYLGELEHEPTPVLHTDGASVKKTLGGSQRKTGPVLYSAPSETEGSETKG
                     SDFFIEDEEERQLVDEKQEENFTSKVDGVTKYDRDYIWGLVHDQLRQTGLSQSASDYA
                     MIYFSDRYQYALEHMRFARSAEVIAEYVFNGVLSEWTKQLRRQEVKGGE"
     gene            6670..8025
                     /gene="dcm"
                     /locus_tag="U1396_000736"
     CDS             6670..8025
                     /gene="dcm"
                     /locus_tag="U1396_000736"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEM5341940.1"
                     /translation="MKFLDLFAGIGGFRLGMESQGHKCVGFCEIDKFARTSYKAMFNT
                     EGEIEYHDIKEVTDHDFRQFRGQVDIICGGFPCQAFSLAGRRLGFEDTRGTLFFEIAR
                     AAKQIQPRFLFLENVKGLLNHDEGRTFATILSTMDELGYDVEWQVLNSKDFQVPQNRE
                     RVFIIGHSRRYRSRFIFPLRRENSPAHLERLGNINPSKRGLNGEVYLTSGLAPTLTRG
                     NGEGAKIAIPVLTPDRLEKRQHGRRFKDNQDPMFTLTSQDRHGVVVAGNLPTSFDQTG
                     RVFDISGLSPTLTTMQGGDKVPKILLREELPFLKIKEATKTGYAKATLGDSVNLAYPD
                     STKRRGRVGKGISNTLTTSDNMGVVVAALEYRQDKWYEVTGIVLEGKLYRLRIRRLTP
                     RECFRLQGFPDWAYERAESVSSKSQLYKQAGNSVTVTVIEAIAREFRRTEEEEKHEPT
                     T"
     gene            8009..8437
                     /locus_tag="U1396_000737"
     CDS             8009..8437
                     /locus_tag="U1396_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341941.1"
                     /translation="MNLLHKKSILDCTELEEHIHQVETKQLLQKILSLPNFDCDFEVT
                     FEDDYHKEMNDPLFYESNLHRISDFLETRDIKNGVDTLLTKDNHLAFRAFGENYSARG
                     KEGILTTLVTVKCFGEGRMPIDMSRYFSTPEPTVENSLTL"
     gene            8448..8831
                     /locus_tag="U1396_000738"
     CDS             8448..8831
                     /locus_tag="U1396_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341942.1"
                     /translation="MLEVYLGNNANTNQDLLTILTTYGVTYRCIKACDVNREILLSLF
                     AKTMDCFELLSPRFLRFKRQYSISLNEMIQLILQKPDQNLRLPLIVCQNHVYPAIGLD
                     EVRTFLPRQVKEELFQASLMKQVTG"
     gene            8840..9073
                     /locus_tag="U1396_000739"
     CDS             8840..9073
                     /locus_tag="U1396_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003065178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5341943.1"
                     /translation="MNERFWDNLEIILAEKDLTWAELARKVFNGQYVYPSEFNRLYQK
                     LRHYKSNRLMPQTRWVERIVLVLEIDYEDLFKR"
     gene            9076..9660
                     /locus_tag="U1396_000740"
     CDS             9076..9660
                     /locus_tag="U1396_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000619435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5341944.1"
                     /translation="MIRIVVFYLAIQLNGFLLSLYLQEYMTIEGIVLLQLVLLSVTCL
                     EIARHKTVQAKNITLRNRLRWFLLGFVAMVAFAVFISFLFPGQTRNQAVLVQVGKQVP
                     PIIFLLFLVNASLLEEIVYRQLLWEKLTFPFEQIGVTSFLFVLSHGPNQLGSWLMYSC
                     LGLTLAVVRLKTDCMTAIALHLLWNSLAYVVTFL"
     gene            9738..10226
                     /locus_tag="U1396_000741"
     CDS             9738..10226
                     /locus_tag="U1396_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341945.1"
                     /translation="MSSEQQERQAMQYVERSSLLTVRTLLKLLEWSARQALAQDSAYK
                     IGVQKLEELLQSPYAIEAIDVSKDILDKPIDVEKFKELMESEKLPIAISWQKDYLYFY
                     AKDKTLLDHHLDELLKKLMSNPEKLEGLIFDKTLDQEIELAKEKIRVTEPSAVKTKEV
                     TL"
     gene            10226..12043
                     /locus_tag="U1396_000742"
     CDS             10226..12043
                     /locus_tag="U1396_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000287311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEM5341946.1"
                     /translation="MYSRQKAFVFGLLGLAFGYFCHRLTLLYDSLTNAPPMERFAYLL
                     GEGGNQVFNPLWLFSFTQKSLLAFILGVLTMTLVYLYVSTGQKVYREGEEYGSARFGN
                     SKEKRNFYSKNPFNDTILARDVRLTLLEKKKNQFDRNKNLIVIGGSGAGKTFRFVKPN
                     LIQLNCSNIVVDPKDHLAEKTGKLFLENGYQVKVLDLVNMTNSDGFNPFRYVETENDL
                     NRMLTVYFNNTRGSGSRSDPFWDEASMTLVRAIASYLVDFYNPPGSSKQEQEARRKRG
                     RYPAFSEIGKLIKLLSKGDNQDKSVLEVLFEDYAKKYGHENFTMRNWADFQNYKDKTL
                     DSVIAVTTAKFALFNIQSVIDLTQRDTMDLKTWGTQKTMVYLVIPDNDTTFRFLSALF
                     FSTVFSTLTRQADVDFKGQLPIHVRSYLDEFANVGEIPDFAEQTSTVRSRNMSLVPIL
                     QNIAQLQGLYKEKEAWKTILGNCDSLLYLGGNDEETFKFMSGLLGKQTIDVRSTSRSF
                     GQTGSSSTSHQKIARDLMTADEVGNMKRDECLVRIAGVPVFRSKKYFPLKHKNWKWLA
                     DKESDERWWHYRINTLAAEEELDLSGHTIRDLSTETSLH"
     gene            12061..12303
                     /locus_tag="U1396_000743"
     CDS             12061..12303
                     /locus_tag="U1396_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012678629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341947.1"
                     /translation="MNQKLTGFVYGVDASSMFSQAMSLLQKGLIAVGAFLVVMGIINL
                     STNIKDGGPGVRNAILEIVGGVMVGAAGAFVTQITI"
     gene            12322..13176
                     /locus_tag="U1396_000744"
     CDS             12322..13176
                     /locus_tag="U1396_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003065166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbL"
                     /protein_id="HEM5341948.1"
                     /translation="MMMNFTSPFVFLASEKVSSDSLFEGFQVDLESTANLVKSLADFN
                     PTVWSYMTAITKGIMQPLGVAILAVVLVLEFSKMAKKIANSGGAMTFEAMAPMIVSYI
                     MVAVVITNTTVIVEAIIALASYVIEQVAGLVTNGGANYDTISGIKGSGIVGKMIIGFF
                     AILIWLVRMASIMVVNILITIRFIQLYLMIPFAPVTIPTFLSDDWRSVGIGYLKNIMV
                     YAVQGILIFLIVSLVPLFESAGKIAVSNGAGVMESLAIMFGGLVQAILLIIALVGSQR
                     TARSILGM"
     gene            13238..13591
                     /locus_tag="U1396_000745"
     CDS             13238..13591
                     /locus_tag="U1396_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrgI family protein"
                     /protein_id="HEM5341949.1"
                     /translation="MNTRVFKDISKVQHRAWLGFTTRQVIFVFPAIALTILVLGLNLF
                     YWQFGDWFVYGFVFSFTIPLMLFGVYRPNDLPFETYLKYRFHYELTVPDRTFTGRKGD
                     QREKIKTLNETKDLF"
     gene            13548..15899
                     /locus_tag="U1396_000746"
     CDS             13548..15899
                     /locus_tag="U1396_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000734154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM5341950.1"
                     /translation="MKKLKHSMKPKTSSNDKKQKTKAQKQEIKPSTVNTLAYQGLFQN
                     GLMQVSPSYFSQTYLLGDVNYQTVGLDDKGAIVEKYSDLINSLDDKTNFQLTIFNQKV
                     NLEKFRKSILYPLQEDGFDAYRDELNRMMDANLEAGENNFSAVKFLSFGKSDQTPKLA
                     FRSLSQIGEYFKSGFSEIDVSLGLLGGEERVNVLADMLRGENHLPFSYKDLTLSGQST
                     KHFMAPTYLSFKHKNHIELDDRLLQIVYVRDYGMELGDKFIRDLMQSDLEVMISLHAK
                     GSTKSETMTKLRTKKTLMESQKIGEQQKMARTGIYLEKVGHVLENNIDEAEALLQTMT
                     QTGDKLFDTVFLIGVLADTEDQLKQSLDIIKQVAGSNDMIIDNLTYMQEAAFNSLLPF
                     GKNYLEGVSRSLLTSNIAVNAPWTSVDIQDKGGKFYGINQISSNIISIDRGKLNTPSG
                     LILGTSGAGKGMATKHEIISTKLKEADSDTEIIIVDPENEYSIIGQAFGGESIDIAPD
                     STTFLNVLDLSDENMDEDPVKVKSEFLLSWIGKLLDRKMDGREKSLIDRVTRLTYKHF
                     VTPSLVEWVFVLAQQPEQEAKDLALDMELYVEGSLDIFSHRTNIKTDSHFLIYNVKKL
                     GDELKQIALMVTFDQIWNRVVKNQKLGKKTWIYFDEMQLLLLDKYASDFFFKLWSRVR
                     KYGAIPTGITQNVETLLLDANGRRIIANSEFMILLKQAKSDREELVHMLGLSKELEKY
                     LVNPEKGAGLIKAGSTVVPFKNKIPQHTKLFDIMSTDPEKMRT"
     gene            15901..18702
                     /locus_tag="U1396_000747"
     CDS             15901..18702
                     /locus_tag="U1396_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000656693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5341951.1"
                     /translation="MKEDKKLVKQARQNFRSNLKSARMHYRKEVRALKQTVPKKGRFR
                     KSAQNSLFQEKKTELKENLLSSQKEAEEKFLKEITYVSPRLLKVKEIKNYRLPQAQER
                     LRTARKHLSEVKLNEKQQAVNPKFTFQKENPSLKSRFQFHQEKSFDRLSAEKDVSSAK
                     REVKQLKKVQKSKKNSTKVKAGLGLAASESLDLIAQEDDLDGLRTMKDTSLKARRYGR
                     FTYQAGKVAVKSGQTGVRFTKTKFSHGKERFQNFKKGKGFTRQKPLKPRRRYHTFLKL
                     ARKQSVAGFKGIVQAIKGSMTFFSVLAGNPLTWIVSGILLILLLMMSFFMSVSGSSVI
                     QQDEIELSKSYTHMTLEDAEHTRTNEKGITFYTKIDEVMVYMNHQYQDYKLDDFMEAG
                     GVTYKEFLSQVWMDLNGGDSIKSMSDLYKEPAYKLSDEDQEELKELTEEGNYLALQEL
                     DNPFQGQTDEDSLNMTYRYGYEVIDEKPTLHHHIILEAKEGQVIVAPMDGKVSLDGEN
                     VVLTSGKGVNKSKLTLFGIHSGRVSENQQVLAGDIIGQTKDGMGLKVTYQKVDDDTDK
                     LVYVNPAFYFPKVIQVQTTILPTIGQFGGDEFERAKAIYDYLKSKGATDQAIAAILGN
                     WSVESSINPKRAEGDYLSPPVGATDGSWDDEGWLSLNGPTIYNGRYPNILKRGLGLGQ
                     WTDTSDGSRRHTLLLEYAKGKHQKWYDLGLQLDFMLHGDSPYYTNWLKDFFKNSGSPA
                     SLAQLFLIYWEGNSGDKLLERQTRASEWYYQVEKGFSQPNGGTAQSDPKALEAVRGDL
                     FENSIPGGGDGMGYAYGQCTWGVAARINQLGLKLKGKNGEKIPIISTMGNGQDWVRTA
                     ASLGGETGTSPQAGAILSFAGGGHGTPTEYGHVAFVEKVYPDGSFLISETNYNGNPNY
                     TFRKLSGVDSSLSFAYTTK"
BASE COUNT         5746 a         3415 c         4293 g         5288 t
ORIGIN      
        1 ggtaaggata tgaacttaag aagaagcgta gaaaaactaa agggaacgat tcgtgtccca
       61 ggagataaat caattagtca tcgctctatt atttttggtt cccttgcaaa aggtgttacc
      121 cgtgtccacg atattttacg tggggaagat gtcttgtcaa ccatgcaggt ctttcgtgat
      181 ttgggtgtaa aaattgaaga caatggtgat attgttgaag tacacggtgt tggttttgat
      241 ggtcttcaag cgccaaaaaa tgatttggat atgggaaatt ctggaacctc gattcgtttg
      301 atttcaggcg ttttggcagg tcaagacttt gaggcgacta tgtttggtga tgattccttg
      361 tccaaacgtc ccatggaccg agtgactatt ccactcagtc aaatgggagt agagatttct
      421 ggacaaactg aacgtgacct acctccgttg accatcaaag ggaataagaa tttaaaacca
      481 attcgctacc aactccctgt agcctctgcc caagtaaaat cagctctgat ttttgctgcc
      541 ttgcaggctg agggagagtc ggtcatcgta gaaaaagaat tgactcgaaa ccatacagaa
      601 gatatgattg tccagtttgg tggacagtta gaagtcaatg gcaaggaaat ccgcatccaa
      661 ggtggtcagg agtttattgc ccaagagatt acagttccag gagatatttc aagtgctgct
      721 ttttggttgg ttgctggctt aatcgtacca ggttcaaaaa ttgtccttga aaatgtagga
      781 atcaatgaaa ctcggactgg tattctagat gtcattaaag ctatgggcgg aaaaatgacc
      841 ctttctaaca tagatgaact tgcaaaatca gcaaccatta cagttgaaac gtcggaattg
      901 aaggctacgg agattgcagg cgaattgata cctcgtttga ttgatgagtt gccaattatt
      961 accttactag cgactcaagc acatggaaca acgattattc gtgatgctga ggagttgaaa
     1021 gttaaagaaa cggatcgtat tcaggttgtt gcagatgctc taaatagtat gggagcaact
     1081 attgaaccaa cagaagatgg tatgattatt cacggaccaa ctgctttaca tggtgctgaa
     1141 atcaatacat ttggtgacca ccgtatcggt atgatgactg ccattgccgc cttgttggcc
     1201 aaagatggag aagttgtatt ggaaagagca gaagctatca acactagcta tcctgccttc
     1261 tttgaacact taaatagttt gatggattag gagaacgtat gccaatcgtt ttacttggat
     1321 ttatgggagt tggaaaaaca acaacagcac atttgttaaa tctccccgtt tacgatatgg
     1381 accatatcat tgaagaacgg attggtatgc ctattgctga ctatttcagt cttgaaggag
     1441 aggcttcgtt tagacaactg gagacagagg tactgaaaga attgctggac ttacctagta
     1501 attgtatcgt gtcaactggt ggtggggtga ttaaatctga agtaaacagg gaattgctgt
     1561 tggcaaatag ggaggacaat gtacttttta ctgcctcctt tgaagtttcc tatcagagaa
     1621 ttcgtaagga tagacaatcg caaagacctc tctttttaca gtgtagtaag gaagagtttg
     1681 aagccctcta tcgtgaacga atggcacttt atcaaggttt agctgatact gtaatcgata
     1741 cagataaact gaatccagaa caagtagcaa ggaaaatttt atgcaagtag cctatctagg
     1801 acctcgtggt tcttttacac atcaagtggc ccagcaggcc tttccgagtg cggatttgca
     1861 ggcttttgag acgattacag aggttatcaa ggcctacgaa acgggagaag ttacctattc
     1921 cgttattcca gtagagaact cgattgaagg tagtgttcat gaaacgattg actatctctt
     1981 tcatcaggcg gagattcatg cggttgcaga gattgttcaa ccgattgccc aacaactgtt
     2041 agccacgagt gccgataagg ctgtagaggt tatccattct catccgcagg caattgctca
     2101 ggggaagaaa tatattcagg aacattttcc tcaggctcgt attgaaataa cagctagtac
     2161 agcctatgct gctcgctttg tggcagaaca ccctgaacaa ccattcgcgg caattgctcc
     2221 gcaagcggca gcagttgaat atggactgga ggtaattgcg caagacatcc aggaaatcag
     2281 cgagaatttt acacgttttt ggattttggg ggataaggct ccgtctattg ccctggaaca
     2341 agtagctaaa aaagtcagtc ttgcactgac attgccagat aacctgccag gagccttgta
     2401 taaggccatg tctgttttct catggagagg aatcagctta acaaaaatag aaagccggcc
     2461 cctgaaaacg gctttgggtg agtatttttt catactggat cttgacaatc agtctgagga
     2521 attattagcc tattctcaaa aagaattgac tagtttagat ataacctata aagtactagg
     2581 gaattacctg gtctatatga ccagctagga tgaagacaga tgaataaaaa caataatatc
     2641 ctaacccatc atgaacaatt gaggttagat tatttgcaaa aaaatatcca ctacttaaat
     2701 gacaaagaaa gtcgtgagtt ggattatcta ttatataaaa aagagctgag agaacggcat
     2761 ggaagtccaa ggcaatctct acgtagcttc acaccaacgg cttacgaaga tgacttcgag
     2821 gaagattatt ttgaagagga tgatgagcaa gaggaactgt tgcctcgcta tcctgaacgt
     2881 aaatccagaa aaacaagaca agccaaacct caacggtttc agtctcctcg tatcgagccc
     2941 aaagtgaaag tgcctaaacc taaaaaagca cgtaaaaagg gtggtttcaa gcgctttatt
     3001 ggtttcgtat tgcttgctat agtgctagtg attgtagcga tgggctatag ttttttcaaa
     3061 ggtatgaata gcgtgagtga gaagccagta gctgaggtct tcaacggcgt agatacatcg
     3121 aatgggacaa atattttaat tttgggaaca gacggtcgtg ttggcgaaag ctcaggtgaa
     3181 actcgaacgg ataccatcat ggttctaaat gtgaataaca cggataacaa agtcaaactt
     3241 gttagcttta tgcgggatac cttggtggat attgagggat atgaatataa actcaatact
     3301 gcctatactt tgggagaaca ggataatcag caaggggctg aagaagttcg gaaggcgttg
     3361 aagaataatt ttgacattga tatcaagtac tatgcgatgg tggattttgc aacctttgcg
     3421 acaacgattg atacactttt ccctgagggc gtaacgattg atgcacagtt ttcaactatt
     3481 aatggtgaag tcgttagctc agtagaagtg ccgaatgatt tacagctgga agaaaatgct
     3541 cctgcttatc aaacgattca ggtcggtgta cagcagatgg atggtaagac cttacttaac
     3601 tacgcgcgct atcgttcgga tgatgaaggt gattttggtc gtacgagacg tcaacaggaa
     3661 gtgctatctg ctgttatgac acaggctaaa aatccaatga aactattctc tggctccgaa
     3721 gctataggta aggttgtggc catgactccg accacagtgc cacaaagctt tatgtggcta
     3781 cagggaccag gccttctatt ggatgcggca aatggtatcg aacgtgttac aatcccagaa
     3841 aatggagact ggattgacga ctatgatatg tatggtggta tggctcttcg tgttgatttt
     3901 gaaaaatacc agcagcgctt ggctgagtta ggcctgcgtt aagaaatatg gtatactaga
     3961 agtgacttcg gtcacttttt tagtggtcca aaaatagaaa gtagaattat gttaaagaaa
     4021 aacgatattg tcgaagtaga agttgtagat ttgacacatg aggggcaggg tgtggcaaaa
     4081 attgatggtt ttgtcttctt tgtagacaat gctcttccag gcgagaaaat ttccatgcgc
     4141 atcttaaaac ttaagaaaaa tattggtttt ggtaaggtgg agcaatggca gagcttctca
     4201 ccagaccgta atcaggactt ggatttgacc tatctaagaa caggtattgc tgacttgggg
     4261 catctcactt atccagccca actagctttt aagaaaaaac aagttgagaa tagtctacgt
     4321 aagattgcag gcatttcaga aatagcagta gcagatactt tgggaatgga caatcctctt
     4381 gcttatcgta ataaggcagc tgttccagtt cgtcgtgtga atgggcagtt agaaacagga
     4441 tttttccgaa aaaattcaca tgatttagtt ccgattgagg atttttacat tcaacataag
     4501 gaaattgatg ccttggttct agcgacacgt gacctgttga gaaaattaga cttgaagcct
     4561 tacgatgaga aagaacagac aggacttgtg agaaatattg ttgttcgtcg tggtcattat
     4621 tcaggtcagt tgatgctagt tttagttacg actcgtccga agattttccg tgttgaaacc
     4681 cttattgagc gtttgacaag ccaatttcca aatcttgttt ctatcgttca gaatattaat
     4741 gaccagaata ccaatgctat attcggtcaa gaattccgtc ttttgcatgg cagtgaaact
     4801 attacagata ccatgttggg caatgaattt gaaatttctg caccgtcttt ctatcaagtc
     4861 aacacagaaa tggctgaaaa actctatcag accgccattg actttgcaga attgtcggca
     4921 gatgatgtcg tgattgatgc ctattcaggt attgggacag ttggtctctc ctttgcaaaa
     4981 caagttaagc atgtttacgg tgtagaagtc gttgaaaagg ctgtccttga tagtcagaag
     5041 aatgctgctc gaaatgggat tgataatgtt acctatgtct gtgatagtgc agaatccact
     5101 atgcaaaaat gggtggcaga tggagtcaaa ccgactgtga tttttgtcga cccaccacga
     5161 aaaggtttga cagaaagttt tatcaaagca agtacttctg taaaaccaga gaaaatcgtc
     5221 tatatctcct gtaatgtggc aacgatggcg cgtgatatta aactttatga ggaattgggg
     5281 tacaaattga cgaaggtaca gccgacggat ttatttccga atacacatca cgtggagtgc
     5341 gtagtgttgc tacaacgaag caacgggtaa aaatccttta ttttaagcac tttttcaaac
     5401 attttgtctt tattgaaaag agtgattttg acataaaaaa ggttcaaaaa aagtacattg
     5461 atgtgaacgt ctgtttggat gtcgactgcg tagacaaaaa atagatacgt cataaaatat
     5521 aatagttcag cgagaacatt ttaataagtg ttctcgtttt tttattttca ggaggaattc
     5581 atgaaaaaga aggaacaatc atcacgccaa atcgtgatat gtcatctcgt gactatttta
     5641 ggagttgata ttgtgaaaac aactcagcta attgatgaat ttggaaatgt tggaatatta
     5701 gtcttggagg gacaatcgtg aaacgtatta ccgctaatca atatcagaca tcagagcgtt
     5761 attataaact cccaaaagtc ttgtttgaga gtgaacgtta taaagatatg aagctggaag
     5821 ttaaggtagc ctacgcggtt ttaaaggatc ggttggagtt gtctttgagt aaaggttgga
     5881 ttgatgagga tggggctata tatttgattt attccaatcc aaatctgatg gcacttttag
     5941 gctgttcaaa gtcaaaacta ctctctatca agaaaacctt acgcgaatat ggcttaatcg
     6001 atgaagtcca acagtcctct agtgaaagag gacgaatggc caataagatt tacttggggg
     6061 agttggaaca tgaacctacc ccagtcttac atacagacgg ggctagtgtt aaaaaaacac
     6121 taggggggtc tcaaagaaag acggggccgg tcttatattc agcccctagt gagactgaag
     6181 gaagtgaaac taaagggagt gatttcttta ttgaggacga ggaggagagg cagttagtag
     6241 atgagaaaca agaagaaaac tttacttcaa aagtcgatgg cgtgaccaag tacgatcgag
     6301 actatatttg gggtttggtt catgaccagt taagacagac aggtctatct cagtcggcta
     6361 gtgactatgc catgatttat tttagtgacc gttatcagta tgctttggaa catatgcgat
     6421 ttgctcggtc agcggaagta atagctgaat atgtatttaa tggtgtgcta tcggagtgga
     6481 ccaagcaact gagacgacaa gaagtaaagg gaggtgaata aggtgatttg gtggatacta
     6541 ggtggaatct atctgatttc tatcgtcatt ttgatttttg aaatcatccg tgcaccagaa
     6601 atggatgatc atatataggc aagagtttta caagtgtaag gctctttttt agttggaaag
     6661 tgaggaaaaa tgaaattttt agatttattt gctgggatag gtggttttag gctaggaatg
     6721 gaatcacagg gtcataaatg cgtgggcttt tgtgaaattg ataaattcgc cagaacatct
     6781 tataaagcca tgtttaacac agaaggggaa atagaatacc atgacattaa agaggtcaca
     6841 gaccatgact ttagacaatt tagagggcaa gtggacatca tctgcggggg atttccttgc
     6901 caagcatttt cactcgcagg cagacgattg ggatttgaag atactcgagg gactctcttt
     6961 tttgagattg ctcgagcggc caaacaaatc caaccacgtt ttctattttt ggaaaacgtc
     7021 aaaggcctac tcaatcacga cgagggacgg acgttcgcca ctatcctctc cacgatggat
     7081 gaattggggt atgatgtcga atggcaggtg cttaacagta aggacttcca agtcccgcaa
     7141 aacagagagc gggtctttat tatcggacat tctagaagat accgttccag attcatattt
     7201 cctctcagaa gagaaaacag cccagctcat cttgaaaggc taggaaatat caatccctct
     7261 aaacgtggtt tgaatggtga agtctatctg acgagtggac ttgctcctac actaacaaga
     7321 ggtaatggag agggagctaa aatcgccatt ccagtcttaa caccagatag actagaaaaa
     7381 cggcaacatg gtcgtcgatt taaggacaat caagacccta tgtttacttt gaccagtcaa
     7441 gacagacatg gggttgttgt cgcaggaaat ctgccgacta gctttgacca gactggaaga
     7501 gtattcgata tatctggctt gtcaccgact ttgaccacca tgcaaggtgg agacaaggtg
     7561 ccaaaaattt tgctgaggga ggagctgcca tttctgaaaa tcaaggaagc cacaaaaaca
     7621 gggtacgcaa aggcaactct tggagactct gtcaatctgg cttatccaga ctcaaccaaa
     7681 cgtaggggac gtgtgggaaa gggaatatcc aatactctga cgacttcaga caatatggga
     7741 gtggtggttg ctgctctgga atatcgacag gataagtggt atgaagtcac aggcattgtc
     7801 ttagagggga aactttatcg cctgagaata agacgactga ctccaagaga gtgtttcaga
     7861 cttcaaggct ttccagactg ggcttatgaa agagcagaga gtgtttctag taagagccaa
     7921 ctatacaaac aggccggcaa tagcgtgact gtcacagtta ttgaagctat tgccagagaa
     7981 tttagaagaa cggaagagga agaaaaacat gaacctacta cataagaaaa gtattctaga
     8041 ttgtactgaa ttagaagaac atattcacca agttgagacc aaacagttat tacaaaagat
     8101 actgtcgctc cccaattttg attgtgactt tgaggtgact tttgaagatg attaccacaa
     8161 agagatgaat gatcccctat tctacgaatc caatcttcat cggatttcgg attttttgga
     8221 aactagggat attaaaaatg gtgtagatac actactgacg aaagacaatc acctggcctt
     8281 tcgtgccttt ggtgaaaatt attctgctag gggaaaggag ggcattttaa cgactttagt
     8341 gacggtcaag tgctttggtg aaggacggat gcccattgat atgagtcgct atttctcaac
     8401 tcctgaacca acagttgaaa atagcctaac cctataagga ggtgcctatg cttgaggtat
     8461 atctaggaaa taatgccaat acaaatcaag atttactaac cattttgacg acctatggtg
     8521 tgacttatcg ttgtataaaa gcgtgtgatg taaaccgtga aatcttactg tcactctttg
     8581 ccaaaacaat ggattgtttt gagttattgt cgccacgatt tcttcgcttt aagcgtcaat
     8641 attcgataag tttgaatgag atgattcagc ttattctcca aaagccagac cagaatcttc
     8701 ggttgccact cattgtttgt cagaatcatg tctatccagc tattgggcta gacgaagtgc
     8761 gaacctttct tcccagacag gtaaaagaag agctgtttca ggccagtctg atgaaacagg
     8821 tgacagggta ggtgtgaaga tgaatgaacg attttgggac aatttagaaa tcattctggc
     8881 agaaaaagac ctcacttggg cagaactagc tcgcaaagta ttcaacggtc aatatgttta
     8941 tccaagtgag tttaatcgcc tctatcaaaa attacggcat tacaaatcca atcgtctgat
     9001 gccacaaaca agatgggttg agcgtattgt tctagtctta gaaattgatt atgaagattt
     9061 atttaagagg tgacaatgat aaggatagtg gtgttttatc tagctataca gcttaacggt
     9121 tttctattaa gtttatacct acaagagtat atgacgattg agggtatagt cttgctacaa
     9181 ttggtcctat taagtgtgac ttgcttagag attgcccgtc ataaaactgt tcaagcaaaa
     9241 aatataacct tgagaaatcg cctaagatgg tttcttcttg gctttgtggc tatggttgct
     9301 tttgcagtct tcatcagctt cctatttcca ggtcagacta ggaatcaagc ggtattggta
     9361 caagtaggaa aacaggttcc tcctattatc tttttattgt ttctggtcaa tgcaagtctc
     9421 cttgaagaga ttgtttatag gcaattgctg tgggaaaaat tgacattccc ttttgaacaa
     9481 ataggcgtga ccagttttct ctttgttctg tcccatggac ctaatcagtt agggagttgg
     9541 ctcatgtata gctgtcttgg cttgaccttg gctgttgttc gattgaaaac tgattgtatg
     9601 acggcaatcg ccttacattt actttggaat agtttggctt atgtcgtaac tttcttgtga
     9661 taccaaaatc aagagttctt ccgtattatg gaagcacctt atgtttgata gggaatcgaa
     9721 aaaaagagga ggtcaccatg tcatctgaac aacaagaacg tcaagcgatg caatacgtgg
     9781 aaagaagtag tttattgaca gtcagaaccc tcttaaagct cttagaatgg tcggctaggc
     9841 aagccttagc tcaagattca gcttataaga ttggggttca aaaactggaa gaactccttc
     9901 aaagccctta cgcaattgaa gcgatagatg ttagtaaaga catactggat aagccaatcg
     9961 atgtggagaa atttaaggag ttgatggagt cagaaaaact gccaatcgca attagttggc
    10021 aaaaagatta tctctacttt tatgccaagg ataagacctt gctcgatcat cacttggatg
    10081 aattgttgaa gaaactgatg tctaatccag agaagctaga aggtttaatc tttgataaaa
    10141 ccttggacca agagatagaa ctagccaaag agaaaattag agtgacagaa ccttcggcag
    10201 tcaaaaccaa ggaggtgacc ttgtaatgta ttctaggcaa aaagcatttg tctttggact
    10261 cttgggtctc gcctttggct atttctgcca tcgtctaacc ctactctatg atagtttaac
    10321 caatgcccca cctatggaac gttttgccta cctcttagga gaggggggaa atcaggtttt
    10381 caatccttta tggctatttt cctttactca aaaatctctt cttgccttta tccttggggt
    10441 tttaacgatg acgctagtct atctttatgt atcgacagga cagaaggtct atcgagaagg
    10501 ggaagagtac ggttctgcac gatttggaaa cagtaaggaa aagcggaact tttacagtaa
    10561 gaatcctttt aatgacacga ttttggctcg tgatgttcgt ctaaccttgt tggaaaagaa
    10621 gaaaaaccag tttgaccgaa ataaaaattt gattgtcatt gggggttctg gggcaggtaa
    10681 gacctttcgc tttgtgaaac ccaaccttat ccaacttaat tgttccaata ttgtcgtaga
    10741 tcctaaagac catttggctg agaagacagg taaactcttt ttagaaaacg gttatcaggt
    10801 caaggtttta gacttggtta atatgaccaa ttcggacggt tttaatccct ttcgttatgt
    10861 agaaacagag aatgatttga accgcatgtt aacggtctat tttaacaata cccgtgggtc
    10921 tggctctcgc agtgatccat tttgggacga ggcttccatg acattggtga gagctattgc
    10981 ctcttatttg gtagattttt acaatcctcc aggaagttcc aagcaagagc aggaagcaag
    11041 acgtaagcgt ggccgttatc cagccttttc tgagattggg aaactcatca aactcttatc
    11101 aaagggagat aatcaggaca aaagtgttct tgaagtcctg tttgaagatt acgctaaaaa
    11161 atacggtcat gagaacttta ccatgagaaa ctgggcagat tttcaaaact acaaggacaa
    11221 gaccttggat tcggtgattg cggtcacaac agctaaattt gccctcttta atatccaatc
    11281 ggtgattgat ttgacgcaaa gagacactat ggatttgaaa acgtggggca ctcaaaagac
    11341 catggtatat cttgttattc cagacaatga tacgaccttt cgtttcctat ctgctttatt
    11401 tttctctacg gttttctcta ctttgaccag acaagctgat gtggacttta aaggacaact
    11461 gcctattcat gttagaagct atctagatga gtttgccaat gtcggagaaa tcccagattt
    11521 tgccgaacaa acctcaacag ttcgttctag gaatatgagt ctagtaccaa tcttgcaaaa
    11581 tattgcccaa ctccaaggac tgtataagga aaaagaagct tggaaaacta tactggggaa
    11641 ctgtgacagt ctcctctatt tgggtggaaa tgacgaggaa actttcaaat tcatgagtgg
    11701 tcttctaggt aaacaaacca ttgatgtcag aagtaccagt cgttcttttg ggcagactgg
    11761 ctcaagttct acttctcacc agaaaattgc tcgtgacttg atgacggctg atgaagtcgg
    11821 gaatatgaaa cgagatgagt gcctcgtacg aattgcagga gtgccagtat ttagatcaaa
    11881 gaaatatttt ccactcaaac ataagaattg gaaatggctt gcggataagg aatctgatga
    11941 acgctggtgg cattatcgca tcaataccct agctgctgag gaagagctag atttgtcagg
    12001 gcatacaata agggatttaa gcacagaaac gtcactacat taatagaaat gaggaaaaat
    12061 atgaatcaaa aactaacagg ctttgtttac ggagtggacg ccagctccat gttctcccaa
    12121 gccatgtctc tattacaaaa aggcttaatt gcagtaggag cctttcttgt tgtcatgggt
    12181 attatcaacc tttcaaccaa cattaaagat ggtgggccag gtgtccgaaa tgccattcta
    12241 gaaattgttg gtggtgtcat ggtgggagcc gcaggtgctt ttgtgacaca gattaccatt
    12301 tagaggaggt cagaacatga catgatgatg aattttacgt caccttttgt atttctagcc
    12361 tctgaaaaag tgtcaagcga tagccttttt gaagggtttc aggtcgattt agaatcaacc
    12421 gctaacttgg ttaaatcact ggcagacttt aacccgacag tttggtctta catgacagcc
    12481 attactaagg ggataatgca gccattgggt gtggctattc tagcagttgt tcttgtactt
    12541 gaattttcaa aaatggccaa gaaaatcgca aactcaggtg gtgcgatgac ctttgaagcc
    12601 atggcaccta tgattgtcag ctacattatg gtcgcggtcg tgattaccaa tacgacggtt
    12661 attgtggaag ccattatcgc tcttgcctct tatgttattg aacaagtggc agggcttgtc
    12721 acaaatggtg gtgctaatta cgataccatc tcaggcatca agggatctgg gattgtagga
    12781 aaaatgatta ttggcttttt tgcgattctc atttggttgg tgagaatggc cagtatcatg
    12841 gttgtcaata tcttgattac cattcgcttt atccaactct atctgatgat tccttttgcc
    12901 cctgttacca ttccaacctt ccttagtgat gactggagaa gtgttgggat tggctacctt
    12961 aagaacatca tggtctatgc cgttcaaggt attttgattt ttctaattgt atcgcttgtt
    13021 cccttgtttg agtcggctgg aaagattgcc gtatcaaatg gagctggagt tatggaatca
    13081 ctcgccatta tgtttggtgg cttggtacag gccatcttgt taatcattgc cttagttggt
    13141 agtcaacgaa ccgcccgaag tattttgggg atgtaggagg aagggagtca ttatctcgcc
    13201 tcctcttttt atagcttact tagattggag aacatttatg aacactcgtg tctttaagga
    13261 catctcaaag gttcaacaca gggcatggct gggatttaca actagacagg ttatttttgt
    13321 atttccagcc atcgccctaa ccattttggt attgggcttg aacttatttt actggcaatt
    13381 tggggattgg tttgtctatg gttttgtttt tagctttacc attccactca tgttatttgg
    13441 ggtctatcgc cctaatgatt taccatttga aacctatctc aagtaccgat ttcattatga
    13501 actaacagta ccagatcgta catttactgg aagaaaagga gaccaacgtg aaaaaattaa
    13561 aacactcaat gaaaccaaag acctcttcta atgacaaaaa gcaaaagacg aaagcacaga
    13621 agcaggagat caaaccctct accgtaaata cgttagccta tcaagggctt tttcagaatg
    13681 gcctcatgca ggtcagtcca agttatttct cacaaaccta tctcttagga gatgttaatt
    13741 atcaaacagt tggcttagat gataaaggag ctattgttga gaaatattcc gatttaatca
    13801 attcactaga tgataagacc aatttccaac tgaccatttt caatcaaaag gtcaatttgg
    13861 aaaaattccg taagagtatt ctctatccct tacaggaaga tgggtttgat gcttatcgtg
    13921 atgaattgaa tcgcatgatg gatgccaact tagaggcggg tgagaacaac ttttcggctg
    13981 tcaagtttct ttcatttggc aagagcgacc aaacaccaaa actagctttt cgttctctgt
    14041 cacagattgg ggaatatttc aagagtggct tttctgagat tgatgtgtct cttggtctgc
    14101 tcggtggaga ggagcgagtg aatgtccttg cggatatgtt gcggggtgaa aatcatttac
    14161 cgttctctta caaggatttg accctgtcag gtcaatccac caaacacttt atggccccaa
    14221 cctacctttc ctttaaacac aagaatcata ttgaattgga cgatcgatta ttacagattg
    14281 tctatgttcg tgactatggt atggagctag gggataaatt tattcgtgac ctcatgcagt
    14341 cagatttgga agtgatgatt agcctacatg ctaaaggctc tactaagtct gaaaccatga
    14401 ccaagctacg aaccaagaaa actttgatgg aatcacaaaa gattggtgaa caacaaaaaa
    14461 tggctcggac tggaatctat ttggagaagg tcggccatgt tcttgaaaac aatatcgatg
    14521 aagcggaggc tcttcttcaa accatgaccc aaacaggaga taaactgttt gacaccgtat
    14581 ttctaattgg cgtgctggcg gatactgaag accaactcaa acaatctctt gatattatca
    14641 agcaagttgc agggtctaat gatatgatta ttgataattt gacctatatg caagaagctg
    14701 cttttaatag tctcttgcca tttgggaaga actatcttga aggtgtttct cggtctctat
    14761 tgacttcaaa cattgccgtg aatgcacctt ggacttccgt tgatattcag gacaagggtg
    14821 ggaaatttta tggcatcaat caaatctcaa gtaatatcat cagtattgac cgtggcaagt
    14881 taaatactcc gtcaggtttg attttaggga cttctggagc gggcaaaggg atggcgacaa
    14941 aacatgaaat tatctctact aagctcaagg aagcagatag tgatactgaa attattattg
    15001 ttgacccaga aaatgagtac agtattattg gtcaagcctt tggtggggag agtattgata
    15061 ttgctccaga ttccactacc ttcttaaatg tcttagatct atctgatgag aatatggatg
    15121 aggatccggt taaggttaag tccgaatttc tcttgtcttg gattggaaag ctcttggacc
    15181 gcaaaatgga tggtcgtgaa aaatccttga tagatcgtgt gacacgcttg acctataagc
    15241 attttgtcac accgtccttg gtcgaatggg tctttgtctt agctcaacaa cctgaacagg
    15301 aagctaagga cttggcactg gatatggaac tctatgtgga agggtcgctg gacatatttt
    15361 cacatcggac caatattaaa acagacagtc atttcctgat ttacaatgtc aaaaagttag
    15421 gcgatgaatt aaaacaaatt gccctcatgg ttacctttga ccagatttgg aatcgggtgg
    15481 taaaaaatca aaaactaggg aagaagacct ggatttactt tgatgaaatg cagctactct
    15541 tattggacaa gtatgcctct gattttttct ttaaactctg gagtcgtgtc cgtaagtatg
    15601 gggcgatacc gacaggtatt actcagaatg tagaaacgct tcttttggat gccaacggca
    15661 gacgcattat tgccaatagt gagttcatga tacttttaaa acaggctaag agtgatcgtg
    15721 aagagttggt gcatatgctt ggactttcta aagagctgga gaagtactta gtcaatcctg
    15781 aaaaaggggc tgggctaatc aaggccggtt caaccgttgt tcctttcaaa aataagattc
    15841 cacaacacac caagctcttt gacatcatga gtacggaccc tgaaaaaatg aggacatgag
    15901 atgaaagagg ataaaaagct agtcaaacag gctaggcaaa actttcgaag caacttaaaa
    15961 tcagcccgta tgcattatcg gaaagaagtt agagccttaa aacagactgt tcctaaaaaa
    16021 ggaagatttc gaaaatcagc tcaaaattct ctgtttcagg aaaagaaaac agagttaaaa
    16081 gaaaatctac tcagtagcca aaaggaagca gaagagaagt tcctaaagga aattacctat
    16141 gtttctccta gactgttgaa ggtaaaggaa attaagaact atcgacttcc tcaagctcaa
    16201 gaacgtttgc ggacggcaag aaaacatttg tcagaagtga aactgaatga aaaacaacag
    16261 gcagttaatc ccaagtttac tttccaaaaa gaaaatcctt ccctgaagtc tcgctttcag
    16321 tttcaccaag aaaaatcatt tgatcgacta agtgcagaaa aagacgtaag ttctgccaag
    16381 cgtgaggtta aacaactcaa gaaagtccaa aagtctaaga aaaactctac caaagtcaaa
    16441 gctggattag gcttggctgc atctgaatcc cttgacctga tagcacagga ggatgattta
    16501 gatggtctaa gaaccatgaa ggatactagt ttgaaagcca gacgctatgg caggtttact
    16561 tatcaagcag gtaaggtggc agtaaaaagt ggacagactg gtgtgcggtt taccaaaaca
    16621 aaattttctc atggaaagga aagattccag aacttcaaaa agggaaaagg attcacacgc
    16681 cagaaacctc ttaaaccaag aagacgctac catacctttt taaagcttgc cagaaaacaa
    16741 agtgtcgcag gtttcaaagg aatcgtccaa gccattaagg gaagtatgac tttcttttct
    16801 gtccttgcgg gaaatccttt gacttggatt gtctcaggca ttctcttgat actccttttg
    16861 atgatgagct ttttcatgag tgtctcaggt agcagtgtca ttcaacaaga tgaaatagaa
    16921 ttgagtaaga gttataccca catgacgttg gaagatgcgg aacatacaag aaccaacgaa
    16981 aagggaatta ccttttacac taagattgat gaggtcatgg tttacatgaa tcatcaatac
    17041 caagactaca agcttgacga tttcatggaa gcaggtggtg tgacctacaa agaatttctc
    17101 agtcaagtct ggatggactt aaatggtgga gattctatta aatccatgtc tgacttatat
    17161 aaagaacctg cttacaagct gtctgatgag gaccaagaag aactaaagga gttgacagaa
    17221 gaaggcaact atctagccct tcaagaattg gacaatccct ttcagggaca gaccgatgag
    17281 gatagcttaa acatgaccta ccgatatggt tatgaggtca ttgatgagaa accaacgctt
    17341 catcatcata tcatcttaga agcgaaagaa ggtcaagtca ttgtagctcc gatggatggc
    17401 aaggtatctc ttgatggaga gaacgttgtt ttgacatctg gtaagggagt gaataagagt
    17461 aaactaacct tgtttggcat tcattcaggc cgagtgagcg aaaatcaaca agtcttggca
    17521 ggagacatta ttggtcaaac caaggacgga atgggtctaa aagtcaccta tcaaaaggtt
    17581 gatgatgaca cggataagtt ggtctatgtc aatccagcat tctactttcc aaaagtgatt
    17641 caggttcaga ccaccattct tccaactatc gggcagtttg gcggcgatga gttcgagaga
    17701 gccaaggcaa tttatgacta tcttaaaagc aaaggtgcga ccgatcaagc tatcgcagct
    17761 attttaggaa attggtcggt agaatcctct attaatccca agcgtgcgga gggcgactat
    17821 ctatctccac ctgttggtgc gacagacggt tcgtgggatg atgagggctg gctttcactc
    17881 aatggtccaa ctatatataa tgggcgttac ccaaatattc tcaaacgtgg tttaggctta
    17941 ggacaatgga cagatacctc ggatgggtca cgcagacata ctttattgtt ggaatatgcc
    18001 aaaggaaaac atcaaaaatg gtatgactta gggttacaac tggatttcat gttgcatggg
    18061 gatagtcctt attacaccaa ctggttaaag gacttcttca aaaattcagg aagtccagct
    18121 agtcttgccc aactatttct catttactgg gaaggaaata gtggtgataa gctacttgaa
    18181 cgtcagacac gagcaagtga gtggtattac caagttgaaa aaggctttag tcaacccaac
    18241 ggtgggacag cacaaagtga ccccaaagct cttgaagctg tacgaggcga cctctttgaa
    18301 aactctattc caggaggtgg tgacggtatg ggatatgctt acggccaatg tacttgggga
    18361 gttgcagccc gtatcaacca attggggcta aaactcaaag gtaaaaatgg tgagaagatt
    18421 ccaattatca gtaccatggg caatggccaa gattgggtac gaacagccgc aagtctcggt
    18481 ggagagacag ggacaagtcc acaagcagga gctatccttt cctttgcggg aggaggacat
    18541 ggcacaccaa cagaatacgg acatgtggct tttgtggaga aagtctaccc agatggctca
    18601 ttccttatct ccgaaaccaa ctacaatggc aatccaaact ataccttccg taaattatct
    18661 ggagtggata gtagcttgag ttttgcttat acgacgaaat aaaaaaggat atgctaacaa
    18721 aatgaataaa tgttagcata tc
//
LOCUS       DASGBY010000028        18688 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.028, whole genome shotgun sequence.
ACCESSION   DASGBY010000028 DASGBY010000000
VERSION     DASGBY010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18688
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.028"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            339..1568
                     /locus_tag="U1396_000748"
     CDS             339..1568
                     /locus_tag="U1396_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM5341952.1"
                     /translation="MRKLMKNRGTIDSRVDYSLILPVFFLLVVGIISLYIAVSQDYPD
                     NVVQMVGQQIAWIGIGTVAAFLVMFFSTKFLWQITPYLYVLGLGLMVLPLFFYSPDLV
                     ASTGAKNWVTIGGMTLFQPSEFMKIAYIIMLSRVIVTFHKYYPNRKIREDFMLIGYMT
                     LFTIPVLILLALQKDLGTSLVFVAIFSGMLLLSGVSWKILLPTALTGIVLVGGFMLIF
                     ISPGGTTFLHNLGMDTYKINRIAAWLDPFKNAQSTTYQQAQSLIAIGSGGLKGLGFNK
                     TNLLIPVRESDMIFTVIGEDFGFIGGTVLIGLYLLLIYRMLRVTLKSNNRYYTYISTG
                     YIMMLLFHVFENVGAATGLLPLTGIPLPFISQGGSSMVSNLIGVGLVLSMGYQSRLAD
                     EKETNRSRRYRKITIKR"
     gene            1582..2121
                     /locus_tag="U1396_000749"
     CDS             1582..2121
                     /locus_tag="U1396_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEM5341953.1"
                     /translation="MTRVAVVLADGFEEIEALAPVDVFRRAHFDCQIVGLDSHEVEGS
                     HGIRVQTDQVFDGDLSSFDLIVLPGGMPGSVHLRDSESLITELQRAVASGKSVAAICA
                     APIVLDKAGLLDSRHYTCFPGKEKDIPSGILLEEDVVVDGPIITSRGAGTSLDFAYKL
                     VDLFGGDGESLAQTMVYHS"
     gene            2303..4255
                     /gene="gyrB"
                     /locus_tag="U1396_000750"
     CDS             2303..4255
                     /gene="gyrB"
                     /locus_tag="U1396_000750"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEM5341954.1"
                     /translation="MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEG
                     LHHLVWEIVDNSIDEALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVET
                     VFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVV
                     ADLEVVGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKR
                     EGVEQTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHEN
                     VVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVI
                     SVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRIVEKGILASKA
                     RIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATKTELFIVEGDSAGGSAKSGRDRE
                     FQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTD
                     ADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGVNQEQE
                     LQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIF
                     DMLMGDKVEPRREFIEENAVYSTLDV"
     gene            4344..6068
                     /gene="ezrA"
                     /locus_tag="U1396_000751"
     CDS             4344..6068
                     /gene="ezrA"
                     /locus_tag="U1396_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HEM5341955.1"
                     /translation="MPTGTIILIVSIVIILIIAYVACLIVRKRNDNLLVALEERKEEL
                     FNLPVNEEVEAVKALHLIGQSQVSFREWNQKWVDLSLNSFADIENHIFEAEGYNNAFR
                     FVSAKNAIDSIESQIDLIEEDIASIRHGLMELKEQEEKNSGRVKHALNLFDSLQEAVR
                     ENPDSYGETLPELEKQLKNIEVEFSEFVMLNSSGDPIEASEILDKTEEHMIALNQIMD
                     RIPSLIERVTKDFPEQLEDLESGYRKLVEQNYLFTEANIESQFQNIRVSIRENTALIV
                     SFDLDAAEAENEGIQAKIDHLYKVFNREIEANKEAVKISKNLPKFLEHVVQNTQLLDE
                     ESQRLNATYLLADSKLSRINQLKARLESIEIVVTESVEDIENPQVAYSILEERLDHSL
                     ASLKEIEEEQLVLADYLKSQELSENTARKKATLYINKLHTLKRYMEKRNLPGIPAEFL
                     TNFFRTSDHVEALIAELDYKRINIEVVNRLLENATYDMNQLEELAYLIVQNATLTEQL
                     LQYSNRYRSFDESVQKAFNRSLSIFEKDFDYQAAFEEISFALETVEPGVTERFVRSYE
                     KTREAIRY"
     gene            6120..6755
                     /gene="serB"
                     /locus_tag="U1396_000752"
     CDS             6120..6755
                     /gene="serB"
                     /locus_tag="U1396_000752"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEM5341956.1"
                     /translation="MTTGLLVMDVDSTLILEEGIDLLGEEAGLGAQVAAITERAMRGE
                     LDFEEALRERVALLKGLPVSVFDRIIKKIHFTPGAAELVSELKMRGYKVAVVSGGFHE
                     TVDRLAAQLELDYVRANRLEVVDGVLTGQVLGEIVTKDTKKACLEEWAAENGLSLSQT
                     IAMGDGANDLPMIQRAGIGVAFCAKPIVQEQAPYQINEKNLYKLIEILDSK"
     gene            complement(6786..7436)
                     /locus_tag="U1396_000753"
     CDS             complement(6786..7436)
                     /locus_tag="U1396_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5341957.1"
                     /translation="MYQTILFDLDGTLTDSGQGILNSVAYALEKMGIEEPDTANLNRF
                     IGPPLYESFSRFYQLNPEDTQSAVDTFRVYFKEKGMFENQLYPGIIPLLEELRTAGKT
                     LVIATSKPEIFAKQILEHFGIAHYFDIIAGASLDSSRISKADVIGYAINQLEAFPKHA
                     VMIGDREHDIEGARMHQLPAIGVLYGYGNKQEFEKAGATMIVETVQDLKRVLLTTE"
     gene            7544..8671
                     /locus_tag="U1396_000754"
     CDS             7544..8671
                     /locus_tag="U1396_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM5341958.1"
                     /translation="MHILIAPDSFKESLSATKVAEAIKKGFSKVYPQAGYDLIPLGDG
                     GEGTVESLMQALSLDGTQTWVTGPFGDKIKVSYAVKDDLAVFEMAEIVGLASIPHERR
                     SPLFIKTQGVGELIVELVQNGVKRIFIGVGGSASHDGGIGMAAGLGVKFYNREGKEVE
                     AIGAHIGEIVSFSTEDMLVDLSQVRIDLVTDVENPLCGPAGATFVFAGQKGLAPAEFE
                     LVDKKMESFYKLVNPMLLDLAGAGAGGGMAAGLVQFAGARIQKGIDFVLDQLDFAHRV
                     TKADLVVVGEGRMDAQSLSGKTPIGVARRTPTGIPIIAICGSLKDDLPEFPFENICAA
                     FPIIASVESLEDTLQKAEKNLVRTAEQVARILQLGGQQRWN"
     gene            8662..8889
                     /locus_tag="U1396_000755"
     CDS             8662..8889
                     /locus_tag="U1396_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341959.1"
                     /translation="MELVKDVAIILFIFICLAKLVSVMRLSEKERGMEMNVIKANGAM
                     FFFNEKNERGRLLGILCLTCIIFSLIFILLY"
     gene            complement(8899..9351)
                     /locus_tag="U1396_000756"
     CDS             complement(8899..9351)
                     /locus_tag="U1396_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HEM5341960.1"
                     /translation="MNDLNTTILQKASGETRLNPDEQRLYMGTYRERVVLIVSFDDLS
                     SEVVGNKFDTICQKLANRYSPLFLKLSPALSDKQQISLLKIAQNFGITTAIIDEKIGQ
                     SPYALVFHTNHAVDNEEVSLESIFPNLISKPEEKKEDAKPSFWKKLFG"
     gene            9501..10808
                     /gene="eno"
                     /locus_tag="U1396_000757"
     CDS             9501..10808
                     /gene="eno"
                     /locus_tag="U1396_000757"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEM5341961.1"
                     /translation="MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTG
                     EHEAVELRDGDKSRYLGLGTQKAVDNVNNVIADAIIGFDVRDQQAIDRAMIALDGTPN
                     KGKLGANAILGVSIAVARAAADYLEVPLYTYLGGFNTKVLPTPMMNIINGGSHSDAPI
                     AFQEFMILPVGAPSFKEGLRWGAEVFHALKKILKARGLVTAVGDEGGFAPKFEGTEDG
                     VETIIEAIEAAGYEAGENGIMIGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQI
                     DYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKRVQLVGDDFFVTNTDYLARGIK
                     EGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAG
                     QIKTGSLSRTDRIAKYNQLLRIEDQLGEVAVYKGLNSFYNLKK"
     gene            11118..11339
                     /locus_tag="U1396_000758"
     CDS             11118..11339
                     /locus_tag="U1396_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation repressor RelB"
                     /protein_id="HEM5341962.1"
                     /translation="MSTVTIRLNQEEEVFFKSYAQLTGQSLSSLFKKALERDIEDEYD
                     LKIYHQAYDEYKADPETISHADFKKELGL"
     gene            11341..11601
                     /locus_tag="U1396_000759"
     CDS             11341..11601
                     /locus_tag="U1396_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002998538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5341963.1"
                     /translation="MYHLEYSKKAQKQIKKLDRQIQRLLFAWIDKHLEGTDNPRANGK
                     GLTGNHANEWRYRIGDYRLICDIQDDKLVILALEFGHRKDVY"
     gene            11768..12409
                     /locus_tag="U1396_000760"
     CDS             11768..12409
                     /locus_tag="U1396_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5341964.1"
                     /translation="MIEWIFFDLGSTLLDEEAAYGYYIDKCVKKLESLDIEVSSDSYK
                     KKMVEYAHKSLDPIRATWHYFAPTEPRPLWTNEGVSLYPETIDALEKLSQNYRLGIIA
                     NQSSSIRELLKEWGIESYFQLIILSEEVGLSKPNTAIFTLALQKTNIPADRVVYVGDR
                     YDNDILPAKSLGMWTVRILTGFGKHASENEKLKSDWVIPSLQEITNIFEQTKN"
     gene            complement(12442..12627)
                     /locus_tag="U1396_000761"
     CDS             complement(12442..12627)
                     /locus_tag="U1396_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341965.1"
                     /translation="MNPVDLFNQVKELIANKDFDGAKQFIEENKDQFGEYLEQAKGLL
                     SGSEGVNGLLDKVKGLF"
     gene            complement(12691..13695)
                     /locus_tag="U1396_000762"
     CDS             complement(12691..13695)
                     /locus_tag="U1396_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEM5341966.1"
                     /translation="MAIYFGTYTKRESKGIYKANFDSETGQLSNLELVTEEPNPTYLA
                     FDKAGHLYSVGAENGLGGIAAFNAEYTLLNHVVSEGAPLCYVAVDEARDLVYGSNFHK
                     GQLLVYKRLADGSLELADVAQHEGSGPHENQASAHVHFSDLTPDKFLVTCDLGCDQVV
                     TYKVSDQGKVEKIATYQAAPGSGPRHIVFHPVAKIAYLICELNSTIEVLIYDGWGQFE
                     HLQTVSTLPEDHTGFNGTAAIRITKDGKFIYGSNRGNDSIAVYKTLADASLELVEIVP
                     TNGKTPRDFTLSPDEKHLIVVHQDSDNATVFERDAENGCLTELSHDFYVPEAVCVTFL
                     "
     gene            13831..14997
                     /locus_tag="U1396_000763"
     CDS             13831..14997
                     /locus_tag="U1396_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000435446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM5341967.1"
                     /translation="MEDKHQKFSLTWFFRLFLNSQAVTFLLVTLLTFLTIFIFSKISF
                     LFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKHKISRTVGISILFVLISLLIIWG
                     LAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV
                     AYAQKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWR
                     EPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP
                     YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITIL
                     FVLLTAGQMYGVLGVLLGIPIYASIKVLVKAAFEWYKAHSSLYEDEENEVVNEQ"
     gene            14987..16216
                     /locus_tag="U1396_000764"
     CDS             14987..16216
                     /locus_tag="U1396_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM5341968.1"
                     /translation="MNNSEKMLVCLDQQDLDKADKYFKRALVQDDSETLLSLAAYLEG
                     IGFFPQARQIYEQVKEEFPEVLINLAQIAFEDGLVEEAFRYLEEISEDSSIYVEALLV
                     KADLYQAEGLSDVACEKLLEASYLSDEPIILFGLAELDMELELFNEAISYYAQLDNRE
                     IYELMGVSTYQRIGIAYASLGKFEAAIEFLEKAVELEYDDQTVFELAALLFEREEYQK
                     ANLYFKQLDTINPDFEGYEYAYAQSLHAEHKIDDALVMTQKGLAKNDFDANLLLQASQ
                     YAYELHDEAGAEDYLLRAKEVADDSNELALRLSNLYLEQERFEEVVALFDEEVDNVLA
                     RWNKAKAYQALERDDEAIALYDELAGELAENPEFLADYVAVLRQLGRLDEAKEQASRY
                     IQLVPDDLAMQEFLNEE"
     gene            16220..16936
                     /gene="budA"
                     /locus_tag="U1396_000765"
     CDS             16220..16936
                     /gene="budA"
                     /locus_tag="U1396_000765"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HEM5341969.1"
                     /translation="MQVNRLFQYNTLGALMAGLYGGSLTVGELLEHGDLGLGTLDSID
                     GELIVLDGKAYQAKGAGEKPEVVEVPADMKVPYAAVIFHEAEVIFKQRFEMTSDELHQ
                     RIESYYDGENLFRSIKIKGTFSHMHVRMIPKSAFDVRFAEVASRQPEYTAENISGTIV
                     GIWTPEIFHGVSVAGYHLHFISDDLTFGGHVMDYVISEGMVEVGPVDQLDQRFPVQDR
                     QYLFAKFNAKEVREDIDKAE"
     gene            complement(16962..18620)
                     /locus_tag="U1396_000766"
     CDS             complement(16962..18620)
                     /locus_tag="U1396_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_147463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEM5341970.1"
                     /translation="MSFDGFFLHHMTAELKANLEGGRIQKINQPFEQEIILNIRSNRQ
                     SHKLLLSAHSVFGRVQLTQSDFTNPKVPNTFTMILRKYLQGAIIEEIRQLDNDRILEF
                     SVSNKDEIGDHTQATLIVEIMGKHSNIILVDKSEQKIIEAIKHVGFSQNSYRTILPGS
                     TYIRPPETHSLNPYTVSDEKLFEILSTQELSPKNLQQVFQGLGRDTASELASHLQTDR
                     LKNFRAFFDQATQPSLTAKSYAALPFANSPENQPHFESLSSLLDFYYQDKAERDRVAQ
                     QANELIKRVASELEKNRKKLVKQEQELADTETAELVRQKGELLTTYLHQVPNDQASVT
                     LDNYYTGQELEIELDVALTPSQNAQRYFKKYQKLKEAVKHLTNLIEETKATIVYLESV
                     DTMLGQASLAEIDEIREELIETGYLKRRHREKIHKRQKPERYLATDGKTIILVGKNNL
                     QNDELTFKMAKKGELWFHTKDIPGSHVVITDNLDPSDEVKTDAAELAAYFSKARHSNL
                     VQVDMIEAKKLHKPTGGKPGFVTYRGQKTLRVTPTEDKIKSMKI"
BASE COUNT         5396 a         3334 c         4289 g         5669 t
ORIGIN      
        1 gtgcgtgatt gccaaaatga ttgccattgg tttacatact catgaattga gcaaacttat
       61 ggggtgtgtg aaggtaaagc attatatttc agcctgttcg aaggtatgaa gatatacgta
      121 ttttatgatt tgtgcactag taatactctt cgaaaatcaa aattctccgt tgtcaacttg
      181 ccttgatgaa ctccagttct atcttcgact tcgtttccta ggctactttt gattttcgtt
      241 gagtataaat cgtatccccg ctgatgtaac tagattttta gtttcaatga gagatgattt
      301 ctgctataat ggaacgagta agaatttgaa gtgaaagtat gaggaaattg atgaaaaata
      361 ggggaacaat cgatagtcga gtagactact cacttatttt accggtcttt tttttattag
      421 ttgtggggat tatttctctc tacattgcgg ttagtcaaga ttatccggat aatgttgtac
      481 agatggttgg tcaacaaatt gcttggatag gaattggaac agtggcagct tttttggtca
      541 tgttcttttc cactaagttt ctgtggcaaa tcacacctta cttgtacgta cttgggctag
      601 gacttatggt attgcctttg tttttctaca gtccagactt agtagcgtca acgggagcaa
      661 aaaactgggt aacgattggt ggaatgactc tttttcaacc atccgaattt atgaaaatag
      721 cctacatcat tatgttgtca agggtgattg tcacctttca taaatattat ccaaatcgaa
      781 aaattcgtga ggattttatg ttgattggtt atatgacact gtttactatc cccgtcctga
      841 ttttgttggc cttacagaaa gatttaggaa cctccttagt atttgtagca atctttagcg
      901 gaatgcttct attatctgga gtttcttgga aaattctatt accgactgcc ttaacgggga
      961 tcgttttggt tggtggattt atgctgattt ttatttctcc tggtggaaca acatttctcc
     1021 acaatttggg gatggatact tataaaatca atcgtattgc agcctggctt gatcccttta
     1081 aaaatgccca atcaacgacc taccagcaag ctcaaagttt gatagctatc ggaagtggtg
     1141 gcctaaaagg actaggtttc aataaaacaa atcttcttat acctgttcga gaaagtgata
     1201 tgatttttac ggtgattgga gaggactttg gttttattgg tgggacggta ttgattggac
     1261 tatacttgtt gctcatttat cgaatgctgc gggtaacgtt gaagtcaaac aatcgatact
     1321 acacctacat atcaactggc tatatcatga tgctgttgtt ccatgtgttt gaaaatgttg
     1381 gcgctgcaac gggtttgttg cctttaacag gtattccttt gccgtttatc tcccaaggtg
     1441 gctcgtccat ggtttcaaat ttgattggtg ttggtctagt gctgtcaatg gggtatcagt
     1501 cacgactagc tgatgagaag gaaacaaatc gatcacgtcg ctatagaaaa attacgataa
     1561 aacgttagaa agttggttta tatgacaaga gttgcagttg ttttagccga tggttttgaa
     1621 gaaatcgaag cattggcccc tgtagatgta ttccgtcgag ctcattttga ctgtcagatt
     1681 gttggtttag atagtcatga agtggaggga tcgcacggta ttcgtgttca aactgaccaa
     1741 gtctttgatg gagacctgtc ttcctttgat ctgattgttt taccaggagg aatgccaggt
     1801 tctgttcacc ttagagattc agagtcacta attacggaat tgcaaagagc ggttgcatca
     1861 ggaaaatcag tagcagcaat ctgtgcggct ccaattgttc tggataaggc cggtttgtta
     1921 gatagtcgtc actatacatg tttcccaggg aaagaaaaag acattccgtc aggtattctt
     1981 ctggaagagg atgtggtcgt tgatggtcca attatcacta gccgaggtgc tggaacaagt
     2041 ttggattttg cctataaatt ggttgattta tttggtggag atggggaaag cctagctcaa
     2101 acaatggttt atcatagtta aagtaatgaa gaagatggag ctaatgtttc ctcttctttt
     2161 ttctatcaaa atattagaaa atatggtata ataaagggta ttcgttagaa tgatttttgc
     2221 tctaaaaata tgtttcgctt ttatccagat ggattggctt ttctattttt aaggagcaac
     2281 aaatagaaaa taaggaaaag aaatgacaga agaaatcaaa gatttacaag agaaggctca
     2341 agaatatgat gccagtcaga ttcaagtctt ggaaggtctt gaagctgttc gaatgcgtcc
     2401 agggatgtat atcggctcaa catctaaaga aggtctccac cacttggttt gggaaattgt
     2461 cgacaactca atcgatgagg cgctggctgg ttttgcggat aaaattgaag tttatattga
     2521 gccagataac tccatcacgg ttattgataa tggacgtggt attccggtag atattcagga
     2581 aaaaactggt cgtccagcgg tagaaactgt ctttacagtg ctccatgcag gtggtaaatt
     2641 tggcggaggc ggttataagg tctcaggtgg attgcacggc gtaggttcat cagtcgtaaa
     2701 cgccctatct actcagctag atgtccatgt ctacaaaaat ggtcaggtat atttccaaga
     2761 gtataaacga ggtgaagtcg ttgcagattt ggaggttgtt ggagaaacag accgttctgg
     2821 tacaacggta cattttacac ctgatccaga aatttttact gagacgactg agttcgactt
     2881 tgcaaaatta aataagcgga tccaagaatt ggccttccta aatcgtggtt taaatctctc
     2941 tattacggac aaacgtgagg gagtagagca aacaaaggaa tatcactatg aaggtggtat
     3001 tgcttcctac gttgagtatc ttaatgagaa caaggatgtc atttttgaga cccctatcta
     3061 tacagaaggt gaaatggatg atattaccgt tgaggttgcc atgcaatata cgacgagtta
     3121 tcatgaaaac gtagttagtt ttgccaacaa tattcacaca catgaaggtg gtacccatga
     3181 gcaaggattc cgtacagctc tgacacgtgt tatcaacgac tacgccaaga aaaataaaat
     3241 tctcaaagaa aatgaggata atttgactgg tgaagatgtg cgtgaaggct tgacagcggt
     3301 catttctgtt aagcacccag gtcctcaatt tgagggacaa actaagacaa aacttgggaa
     3361 tagtgaagtg gtcaaaatta ccaaccgcct tttctctgat gcctttgcag aatttctttt
     3421 ggaaaatcca cagattgcta gacggattgt tgaaaaaggg attttggcaa gcaaggcgcg
     3481 tattgctgct aagcgtgcgc gtgaggtaac tcgtaagaaa tcgggtcttg aaatctcaaa
     3541 cctcccaggt aagttagcag actgttcctc aaatgatgca acgaaaacag agcttttcat
     3601 cgttgagggg gactcagccg gtggttcagc taaatccggt cgcgaccgtg aatttcaggc
     3661 tattttaccg attcgtggta agattttgaa cgtagaaaaa gccagcatgg acaagatttt
     3721 ggccaacgaa gaaatccgta gtctatttac agctatggga actggctttg gtgcggattt
     3781 cgacgttagc aaggcacgtt atcaaaaatt agtcattatg acagatgccg atgtcgatgg
     3841 tgcccatatt cggacactcc ttctgacatt attttaccgc tacatgcgtc ctgttgtaga
     3901 agcgggatac gtatatatcg ctcaaccacc tatttacggt atcaaggttg gaagtgagat
     3961 aaaagaatat attcaacctg gggttaatca agagcaagaa ttgcaagatg ccttagaaag
     4021 acatagtacg ggacggtcca agccaacgat ccaacgttac aaaggtttgg gagaaatgga
     4081 tgatcatcag ttgtgggaaa ctacgatgaa tcctgaaaat cgtctcatgg cacgcgtttc
     4141 agttgatgat gcggcagaag ccgataagat ttttgacatg ttaatggggg ataaggttga
     4201 acctcgtcga gagtttatcg aggaaaatgc tgtttattca acattggatg tctaaaaact
     4261 aaaaaaacaa gtgcatatac tagagattta tggtataatt aagcgatatt ttctagtaat
     4321 tactatgagc taaggagatt tacatgccta caggaacaat catcttaatc gtttcgattg
     4381 ttattatttt aatcattgcc tatgtagctt gcctgattgt tcgtaaacga aatgacaacc
     4441 ttttggttgc attggaagaa cgtaaggaag agctatttaa ccttccagtt aatgaagaag
     4501 tcgaagctgt caaagcactt catttgattg gtcaaagtca ggtgtcattc cgtgaatgga
     4561 atcaaaaatg ggttgatttg tcgctcaatt catttgccga cattgaaaat catatctttg
     4621 aggcagaagg ctataacaat gcctttcgct ttgtgagtgc aaagaacgct atcgacagta
     4681 tcgaaagcca aattgattta attgaagaag acatcgcctc tatccgtcat ggtttgatgg
     4741 agttgaagga gcaagaagag aaaaactctg gtcgcgtaaa acatgcgtta aacttgttcg
     4801 atagtttaca ggaagctgtt cgtgaaaatc cagatagcta cggtgagaca ctaccagaac
     4861 ttgagaaaca attgaaaaat attgaagttg agttttctga atttgtgatg ctcaattcct
     4921 ctggtgaccc gattgaagct tctgaaatcc ttgataagac tgaagagcat atgattgccc
     4981 tcaatcaaat catggatcgc attccaagtt tgattgaacg agttacaaaa gatttcccag
     5041 agcaattgga agatttggag tcgggttatc gtaaactggt tgagcagaat tatttgttca
     5101 cagaagctaa catcgagtca cagttccaaa atattcgcgt ttcaattcgt gaaaatactg
     5161 ctttgattgt ttcctttgat ttggatgccg cagaagctga aaatgaggga attcaagcaa
     5221 aaattgatca tttgtataaa gtcttcaatc gtgagatcga agcgaataag gaagctgtta
     5281 agattagtaa aaacttgcca aaattcttgg agcatgttgt ccaaaataca cagctcttgg
     5341 atgaggaaag ccaacgccta aatgcaactt acttgctggc agatagcaaa ctttcacgga
     5401 tcaatcagct taaagctcgt ttggaatcga ttgaaattgt tgttacagaa agtgtggaag
     5461 acattgaaaa tccacaagtt gcatattcta ttttggaaga gcgtttggac cattcattgg
     5521 caagcttgaa agaaatcgaa gaggagcagc ttgttttagc tgactatctt aaatcacaag
     5581 aattgtcaga gaacacagcg cgtaagaaag ctacacttta tatcaacaaa ttgcataccc
     5641 ttaagcgtta tatggaaaaa cgcaaccttc caggaattcc agctgaattt ttaacaaact
     5701 tctttagaac gagcgatcat gtggaagcct tgattgccga gttagactat aaacgaatca
     5761 atatcgaagt tgttaatcgt ttgttggaaa atgcaacgta tgatatgaat caattggaag
     5821 agttggcgta tttgattgtg caaaatgcga ctttaacaga gcagttgcta caatactcta
     5881 accgttatcg ttcattcgat gaaagtgtgc aaaaagcatt taaccgttca ttatcaattt
     5941 ttgaaaagga ttttgattac caagcagcat ttgaagaaat ttcatttgct ctggaaacag
     6001 ttgaacctgg tgtaacagag cgttttgtac gttcatacga aaaaactcgc gaagccattc
     6061 gctactagat aaaaagccat ttggcttttt atttttatac tttgaaagga atattggaga
     6121 tgacaactgg attattagtt atggatgttg attcaacatt aattttggaa gaaggaatag
     6181 atttacttgg agaagaggcc ggtttaggag cgcaagttgc agcaattacc gaacgtgcta
     6241 tgcgtgggga attggatttt gaagaagcct tacgtgaacg tgtggcgttg ttaaagggac
     6301 tgcctgtttc tgtgtttgat cgaattatca aaaaaatcca ctttacgcct ggagcagcag
     6361 aattggtctc agaattaaaa atgcgaggct ataaggtagc agtagtttca ggcgggtttc
     6421 atgaaacagt cgatcgacta gctgcacagt tagagttaga ctatgttcgg gctaatcgat
     6481 tagaagtagt ggatggagta ttgacgggac aagtattggg tgaaattgta acgaaagata
     6541 ctaaaaaagc atgtttagaa gaatgggcgg cagaaaatgg gctgagtcta tctcaaacga
     6601 ttgccatggg ggatggagca aatgatctac caatgattca acgagcagga attggagtag
     6661 ctttctgtgc taaaccgatt gtccaagaac aggcgcccta ccaaataaat gaaaaaaatc
     6721 tctataaact aatagagatt ttagatagta aataacgaga agtcagctga gtgctgactt
     6781 ttcttctatt ctgttgtcag taaaaccctt ttcaaatctt ggacggtttc gactatcatg
     6841 gtagccccag ccttttcaaa ttcctgcttg ttcccatagc cgtaaagaac accgatggcg
     6901 ggaagttggt gcatgcgtgc tccttcaatg tcatgttccc tatctccaat catcacagca
     6961 tgttttggaa atgcttctaa ttgatttata gcatagccga tgacgtccgc cttactgatg
     7021 cgactactat ccagactagc accggcaatg atatcaaagt agtgagcgat accaaaatgt
     7081 tctagaatct gtttggcaaa tatttctggc tttgaggtag caattactag tgtttttcca
     7141 gcagttctca attcttcaag cagagggatg attccaggat agagttgatt ttcaaacatt
     7201 cctttttctt taaaatagac acggaaagta tcaactgcac tttgtgtatc ttcagggttg
     7261 agttggtaga atcgtgaaaa agattcatag agtggcgggc cgatgaatcg gtttaaattg
     7321 gctgtatctg gttcttcgat tcccattttt tctagtgcgt aggcgacgga gtttaagatt
     7381 ccttgtccag aatcagtaag tgttccatct aagtcaaata atatagtttg atacatactt
     7441 atctcctttc tttcagtata acacagacga tgaaaaacag aaaagattta ttgaaagctg
     7501 aataggagcg tgatatacta ataatataaa ggaggctagt accatgcata ttctcattgc
     7561 tccggattca tttaaagagt ctctttcagc tacaaaggtt gctgaagcga ttaaaaaagg
     7621 attttctaag gtttacccac aagcagggta tgacttaatt cccctaggag atggtggcga
     7681 agggacagtt gagagtctaa tgcaggcctt atccttggat gggacccaga cttgggtgac
     7741 aggtccattt ggagataaaa ttaaggtttc ctatgcggtt aaagatgatc ttgcggtttt
     7801 tgaaatggct gagattgtag ggctggcaag catcccgcat gaaagaagga gtcctctctt
     7861 tattaagaca caaggggttg gggagctgat tgtggagctc gttcaaaatg gtgtcaaacg
     7921 catatttata ggagtaggtg gctctgccag tcatgatggt ggtatcggaa tggcggcagg
     7981 tttaggagtg aaattttata atcgagaggg aaaagaagta gaggcaattg gagctcatat
     8041 cggggagatt gtcagctttt ccacagagga tatgttggta gatctatctc aggtcaggat
     8101 tgatttggta acggatgtgg agaatccgct ttgcggacca gcgggtgcca catttgtttt
     8161 tgcaggtcag aaaggtcttg cccctgctga atttgaacta gtagacaaga aaatggagtc
     8221 cttttataaa ttagttaatc caatgctact cgatttggca ggagcgggtg ctggaggagg
     8281 tatggcagca ggtttagtcc aatttgctgg tgctcgcatt caaaaaggca tcgactttgt
     8341 cttggatcag ttggactttg ctcatcgcgt caccaaagcg gatctggttg tggtcggaga
     8401 agggcggatg gatgcccaaa gcttatcagg gaagactccg ataggagtag ctagacggac
     8461 gccgacgggg attcccatca ttgcaatttg tggtagcctc aaagacgatc ttcccgagtt
     8521 tccttttgaa aatatctgtg ccgcttttcc gataattgca agcgttgaaa gtttggagga
     8581 cacgcttcaa aaagcagaaa aaaacctggt ccgcacggca gagcaggtgg caagaattct
     8641 tcagttagga ggtcaacaaa gatggaatta gtgaaagatg tggctattat cttatttatt
     8701 tttatttgtc ttgcaaagct agtatccgtt atgagacttt ccgaaaaaga aagaggaatg
     8761 gaaatgaatg taataaaggc aaatggagca atgttctttt tcaatgaaaa aaatgaaaga
     8821 ggcagattgc taggaatcct ttgtctaacc tgtattattt ttagtttaat atttatactg
     8881 ctttattgat aaataagtct aaccaaataa ttttttccag aaggaaggtt ttgcatcttc
     8941 ctttttttct tctggttttg agataagatt tggaaatatg gattctaagc taacttcttc
     9001 attatccaca gcgtgatttg tgtgaaagac aagtgcgtag ggagactgtc ctattttttc
     9061 atcgatgata gcggtagtaa taccgaagtt ctgagcaatt tttagtagtg aaatttgttg
     9121 cttgtcagac agggctggcg agagtttgag gaatagagga gagtatctgt ttgctagttt
     9181 ttgacaaatc gtatcgaact tatttccgac gacttcacta ctcaaatcgt caaaggaaac
     9241 gatcaggaca acccgttcgc gataggttcc catgtataga cgttgttcat ctggattcaa
     9301 tcgtgtttcg ccagaggctt tctgtagtat ggtagtattt aaatcgttca tggtttcagt
     9361 ataacatact cagttaactt tgaaaaggaa ggcgtttaca ttatttcttt cagtaaaata
     9421 acctgttttt tcttgaaaaa tcccttcttt tagggtatga tagctatgta acaattttaa
     9481 actcaaagga gagtaatata atgtcaatta ttactgatgt ttacgctcgc gaagtccttg
     9541 actcacgcgg taaccctaca cttgaagttg aagtttatac tgaatcaggt gctttcggac
     9601 gtggtatggt tccttcagga gcttctactg gtgagcacga agcagttgag cttcgcgacg
     9661 gtgacaaatc tcgttacctt ggtcttggta ctcaaaaagc tgttgacaac gtgaacaacg
     9721 tgattgctga cgctatcatc ggttttgacg ttcgtgatca acaagctatc gaccgcgcta
     9781 tgatcgctct tgacggtact cctaacaaag gtaaattggg tgcaaacgca atcctcggtg
     9841 tttctatcgc tgttgcgcgt gctgctgctg actaccttga agtgccactt tacacttacc
     9901 ttggtggatt caacactaaa gtattgccaa ctccaatgat gaacatcatc aacggtggtt
     9961 ctcactcaga cgctccaatc gctttccaag aattcatgat cttgccagtt ggcgctcctt
    10021 cattcaaaga aggtcttcgt tggggtgctg aagtattcca cgctttgaag aaaatcttga
    10081 aagctcgtgg tttggtaaca gctgttggtg acgaaggtgg tttcgctcct aagttcgaag
    10141 gaactgaaga cggtgttgaa acaatcatcg aagctatcga agctgctggt tacgaagctg
    10201 gcgaaaacgg catcatgatc ggtttcgact gtgcgtcatc tgaattctac gataaagagc
    10261 gtaaagttta cgactacact aaattcgaag gtgaaggcgc tgctgttcgt acttctgcag
    10321 aacaaatcga ctaccttgaa gaattggtta acaaataccc aatcatcact atcgaagatg
    10381 gtatggatga aaacgactgg gatggctgga aagctcttac tgagcgtctt ggcaaacgcg
    10441 ttcaattggt tggtgacgac ttcttcgtaa caaacactga ctaccttgca cgtggtatca
    10501 aagaaggtgc tgctaactca atccttatca aagttaacca aatcggtact cttactgaaa
    10561 catttgaagc tatcgaaatg gctaaagaag ctggctacac tgccgttgta tcacaccgtt
    10621 caggtgaaac tgaagattca acaatcgctg acatcgcagt tgcaactaac gcaggccaaa
    10681 tcaagactgg ttcattgtca cgtacagacc gtatcgctaa atacaaccaa ttgcttcgta
    10741 tcgaagatca acttggtgaa gttgcagtct acaaaggctt gaactcattc tacaacttga
    10801 aaaaataaaa cagtctggga gactgtttta tccctgagct agcatagcga gggttatagt
    10861 aagaacaagt ctggaaattt ccagacttgt ttttcgtagt acagtgtact aatttatccc
    10921 cgagctagta tagtgaggga tatagtaaga acaagtctga aaatattcgg acttgttctt
    10981 tgactttata tgatttaagg gctgtaaagc cttgatataa ggcactttgg ggcatcatcc
    11041 caaggtactt ttttgataga ttgacagata ctttaaaaat gtgttacaat gtaacacaaa
    11101 gaagcgaggt gaatatcatg agtacagtga caatcagatt aaatcaagaa gaagaagtat
    11161 tctttaaaag ctatgcacaa ttaacaggtc aaagtctttc tagccttttt aagaaagctt
    11221 tggagcgtga tattgaagat gagtatgatt taaaaatcta tcatcaagct tatgatgagt
    11281 acaaagcaga tccagaaaca attagtcatg ctgattttaa gaaagagcta ggattatagc
    11341 atgtatcatt tagagtattc taaaaaggct caaaagcaaa ttaagaaatt agataggcaa
    11401 attcagaggt tgttgtttgc ttggattgat aaacacttag aagggactga taatccacgc
    11461 gccaatggta aaggtttgac aggcaatcat gctaacgagt ggcgttatcg tatcggagat
    11521 taccgactga tttgcgatat tcaagatgat aagttggtta ttttagcact tgagtttgga
    11581 catcgtaaag atgtctattg atgcgtgaaa atctatgaca agataggtcc taactatttt
    11641 taagaatgaa tagaaaacta gactgaaatt cctagggaat tttctttgcc ttgatattga
    11701 taaaatgata ttctaaaaag gcagatcaac ttaagtattc tcattttgag aagagatgga
    11761 gagtgggatg atagagtgga tattttttga tttgggttcg acgcttttag atgaagaggc
    11821 tgcttatggt tattatatag acaagtgtgt gaagaagtta gagtctctgg atatagaggt
    11881 ttcatcagat tcttataaaa agaaaatggt ggagtatgct cataagtcgc tagatccaat
    11941 tcgtgcgacc tggcactatt ttgcaccgac cgagccacgt cctttatgga caaatgaggg
    12001 tgtgagcctg tatcctgaaa caatagatgc tctagagaag ttatcacaaa actatcgatt
    12061 ggggattatt gccaatcagt ctagtagtat tagagaactg cttaaagagt ggggaattga
    12121 gtcttatttt caactcatca tcctctctga agaggttggt ttatctaaac caaatacagc
    12181 tattttcaca cttgccttgc aaaaaacaaa catccctgca gatagagttg tctatgtcgg
    12241 ggataggtat gataatgata ttctgcctgc taaatctttg ggaatgtgga ctgtacggat
    12301 actgacaggt tttgggaagc atgccagtga aaatgaaaaa ttgaagagcg attgggtaat
    12361 tccttcattg caagagataa caaatatttt tgaacaaaca aaaaactaga ctgaatattc
    12421 tcagcctagt ttttacatgt attagaacaa gcctttaact ttatctaaaa gaccgttaac
    12481 accttcagaa cctgataaca agccttttgc ctgttccaag tattcaccga attggtcctt
    12541 gttttcttcg ataaattgtt ttgcaccatc aaagtctttg tttgcaatca attcttttac
    12601 ttggttaaaa agatctactg gattcatgtt gaaatcacct cctatgagac tattaaacca
    12661 aaactgtacg gatttcacaa ttgaaacgac ttataaaaat gtaacgcaaa ctgcttcagg
    12721 aacatagaaa tcgtgtgaaa gctcagtcaa acagccattt tcggcatctc tttcgaatac
    12781 agttgcattg tcagaatctt gatggacaac aatcaaatgc ttttcatcag gactaagcgt
    12841 gaaatcgcga ggagtttttc catttgttgg gacgatttca actaattcta agctggcatc
    12901 agcaagtgtt ttgtagactg cgatagagtc gtttccgcgg ttggatccat aaataaattt
    12961 accatccttt gtgatgcgaa tagcggcagt accgttgaaa ccagtatggt cttctgggag
    13021 agtagagaca gtttgtaggt gttcaaattg tccccagccg tcatagataa gcacctcaat
    13081 agttgaattg agttcacaga tgagataggc gatttttgcg acaggatgga agacaatgtg
    13141 acgtggacca cttcctggcg cagcctgata ggttgctatt ttctctactt ttccttggtc
    13201 agatacctta taggttacca cttgatcaca tcctaaatca caggttacta aaaatttatc
    13261 gggcgtcaaa tcagaaaagt gaacgtgggc ggaagcttgg ttttcgtgcg gcccagatcc
    13321 ttcgtgttga gcgacatcag ctaattctag cgaaccatcc gccaaacgtt tataaacaag
    13381 tagttgccct ttgtggaaat tggaaccata aactaaatct cttgcttcat ctacagcgac
    13441 atagcaaagt ggtgcgccct ctgatacaac atggttgagt agagtatact cagcattaaa
    13501 ggcagcgata cctcctagac cattttcagc gccgacggag tatagatgtc cggccttatc
    13561 aaaggcaagg taggtagggt taggttcttc agtgaccaat tctagattgc taagttgtcc
    13621 tgtttcagag tcaaaatttg ctttataaat tccttttgat tcacgttttg tataggtacc
    13681 gaaatagata gccataggat tctccttttt ggaaatgatt gataaaatta taccatgttt
    13741 ttctgagaaa gtcgtataaa ttctgtagtt gatttttaca aaaatccttt ctccatgtta
    13801 caatagaaaa aaagactagg agtgtattag atggaggata agcatcaaaa atttagtctg
    13861 acttggtttt tccgcttgtt tttaaatagc caagcggtga catttttatt ggtaaccttg
    13921 ctgacttttt tgaccatatt tatttttagt aaaattagtt ttttattcag accaatagga
    13981 agctttttag aaattgtatt gttaccgatg attttaacag gtcttttgta ttacctatta
    14041 aatccgatgg ttgactggat ggaaaagcat aaaatttctc gtacagttgg tatttccatt
    14101 ctctttgttt taatcagtct tctcattatc tggggactgg cggtggcaat tccgagtatt
    14161 caagagcaag tgacatcttt tgcgcaaaat cttccttcaa atatccagaa aatcgaagga
    14221 caggtaactg ggctcctaca ggatcagcgc tttgaacaat ttagaccaac agctctggag
    14281 atgttaaata aggtcaatga tcagattgtt gcctatgctc agaagttttc ttcaagcgct
    14341 gtgaactggg caagtaattt gatttcaacc gcttcacaga ttattgttgc tattttgatt
    14401 atgcccttta ttctctttta tctgttacgg gatggtcagt atttgaataa acacattacc
    14461 caatatctac caaccaagtg gagagaaccg attggaacag tactatcaga tgtgaatggg
    14521 caattatcaa actatgttcg tggtcaggtg accgttgcga ttattgttgc cctgatgttc
    14581 tcagtgatgt tctcaatcat tggtcttagc tatccaataa ctttgggggt gatggctggt
    14641 ttcctcaatc taattccgta tttgggttct ttcttggcca tgattccagc tgttatttta
    14701 ggattgattg ctggtccaat catgctgata aaggttttgg tagtctttat gattgagcag
    14761 actatagaag gtcgttttgt gacaccattg attatcggaa gctccctaag tattcatccg
    14821 attaccattt tatttgtatt attgacagct ggtcagatgt acggtgtcct aggagttctt
    14881 ctgggaattc caatatatgc ctctattaag gttttagtga aagcggcatt tgaatggtac
    14941 aaggcacaca gtagtttgta tgaagatgaa gaaaatgagg ttgtgaatga acaatagtga
    15001 aaaaatgttg gtttgtttgg accaacagga tttagacaag gcagataagt atttcaagcg
    15061 cgccttggtg caagatgata gcgaaacgct tttgtccttg gcagcctact tagaaggcat
    15121 tggttttttc ccacaggcta gacaaatcta tgaacaggtc aaagaagaat ttcccgaagt
    15181 actgatcaat cttgcccaaa tagcatttga agatggcttg gttgaagaag ctttcagata
    15241 tttggaggaa atttcggaag acagttctat ctatgtggaa gccttgttgg tcaaggcgga
    15301 cctgtatcag gcagaaggct tgtcggatgt ggcgtgtgaa aaattgttag aagcaagtta
    15361 cttatcagat gaacccatca tcctctttgg cttagcagaa ttggatatgg aactggagct
    15421 ttttaatgag gctatttcct actatgccca gctggataat cgtgaaatct acgaattaat
    15481 gggagtttct acctatcagc gaattggtat tgcctatgca agtttgggga aatttgaagc
    15541 ggcgattgaa tttttggaaa aagctgttga gttggaatac gatgatcaga cggtctttga
    15601 attggctgct ctgctatttg aacgagaaga ataccaaaag gccaatctct atttcaagca
    15661 gttggatacc atcaatcctg attttgaggg ctatgaatat gcctatgctc agtctcttca
    15721 tgccgagcat aagattgatg atgccttggt tatgactcaa aaaggcctgg ctaaaaatga
    15781 ctttgatgcc aatctcttgc ttcaggcttc acagtatgcc tatgaattgc acgacgaggc
    15841 gggggcagaa gattatcttc tacgggcaaa agaagtggca gatgatagta acgaactagc
    15901 tctgcgcttg tccaatttgt atcttgagca ggaacgattt gaagaggttg tggctttatt
    15961 tgatgaagag gtagataacg ttctagctcg ctggaataag gccaaagcct atcaagctct
    16021 agaaagagat gatgaagcta ttgcgcttta cgatgaattg gctggagaat tggctgagaa
    16081 tcctgaattt ttggctgatt acgtagcggt tttacgtcaa cttggtcgtt tggatgaggc
    16141 aaaagagcaa gctagtcgtt atatccaatt ggtaccagac gatttagcca tgcaagaatt
    16201 tttgaatgaa gagtaggtta tgcaagtaaa tcgattattt caatacaata ccttaggtgc
    16261 cttaatggct ggactgtatg gcggctcctt gacagttggc gaattgttgg aacatggtga
    16321 tttgggtttg ggaaccctgg attccattga tggcgagctg attgtcttgg atggaaaggc
    16381 ttatcaggcc aagggtgcag gggagaaacc agaagtggtt gaagttccag ctgatatgaa
    16441 agttccctat gcggcggtta ttttccatga agcagaagtc attttcaaac aacgctttga
    16501 aatgactagc gatgaattgc accagcggat tgagtcatac tatgacgggg aaaatctttt
    16561 tcgctccatc aaaatcaaag ggacgttttc gcatatgcac gtgcgcatga ttccaaaatc
    16621 ggcttttgat gttcgttttg cggaggtggc aagtcgccag cctgagtata ccgctgagaa
    16681 tatttcaggt accattgttg gtatttggac accagaaatt tttcacgggg tcagtgtggc
    16741 tggctatcat ttgcatttta tttcggatga tttgacattt ggcgggcatg tcatggacta
    16801 tgtgatttca gaaggaatgg ttgaagtggg accagtcgat caactagacc aacgttttcc
    16861 tgttcaagac cgccagtatc tttttgctaa gttcaacgct aaggaagtta gagaagatat
    16921 tgataaggcg gagtaggttt caatacagaa aaatccatga attagatttt catggatttt
    16981 attttatctt cagttggggt gacacggagg gttttctgac ctcggtaggt cacaaagcct
    17041 ggtttgccac ctgttggctt atggagtttt ttggcttcaa tcatatcgac ttggaccaaa
    17101 ttggaatgtc tggccttaga gaagtaggct gctaattcag ctgcgtctgt cttgacctcg
    17161 tcacttgggt ccaagttgtc tgtgatgacc acatgactac ctggaatgtc tttggtatgg
    17221 aaccagagtt cgcctttctt ggccattttg aaggtcaact catcattttg caggttattt
    17281 ttcccgacca gaataatagt cttcccgtcc gtcgccaagt atcgctcagg tttctgacgc
    17341 ttatggattt tctcacggtg gcggcgtttg aggtagcctg tttcaatcaa ttcctcacgg
    17401 atttcatcga tttctgccag actagcctgt cccagcatgg tgtcaacgga ctccagatag
    17461 acaatggttg ccttggtctc ctcaatcaag ttggtcaggt gcttgaccgc ctccttgagt
    17521 ttctggtact ttttgaaata acgttgggca ttctggctag gagtaagagc cacgtccaac
    17581 tcaatctcca gttcctggcc cgtatagtag ttgtctaagg tcacactagc ctggtcattt
    17641 ggtacttgat gcagataggt ggtcaagagc tcgccctttt gtcgcaccaa ctccgccgtc
    17701 tccgtatccg ccaattcctg ctcctgcttg accagtttct tgcgattttt ctccaactca
    17761 ctggctaccc gcttgatcag ctcattggcc tgctgggcca cccgatcccg ctccgccttg
    17821 tcctgatagt agaagtccag cagactgctc aggctctcaa agtgtggctg gttttcaggg
    17881 ctattggcaa atggcagagc agcataggat ttagctgtca ggctaggctg agttgcctgg
    17941 tcaaaaaagg cacggaagtt cttgaggcgg tccgtctgta agtgactggc cagttcagaa
    18001 gctgtatccc gccccaaacc ttgaaagacc tgttggagat tttttggact cagttcctga
    18061 gtcgataaga tttcaaacaa tttctcatca gacaccgtat aaggattgag agaatgtgtc
    18121 tccggtggac gaatataggt ggagcctggc aagatagttc ggtaggagtt ttgcgagaaa
    18181 ccaacgtgct tgatagcctc aataatcttc tgttcagact tatctaccaa gatgatattg
    18241 ctgtgcttgc ccatgatttc cacaatcaag gttgcttggg tatggtcgcc aatctcgtcc
    18301 ttgttggaca ccgaaaattc taagatgcgg tcattgtcca actgacgaat ctcctcgata
    18361 atggctccct gcaagtattt ccgcagaatc atggtaaagg tattgggcac tttgggattg
    18421 gtaaagtccg actgggtcag ctgaacccga ccgaaaaccg aatgggcgga caagagcaat
    18481 ttatggctct gacggttgct acggatattg aggataatct cctgttcaaa gggctggttg
    18541 attttctgaa tccgcccacc ttctaaattg gcctttaact cagccgtcat gtgatgtaaa
    18601 aaaaatccgt caaaagacat ggttttcctc tttctaatag ctataactca gtctagtata
    18661 tcataaatca gtgacttttt aacgaagg
//
LOCUS       DASGBY010000029        18649 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.029, whole genome shotgun sequence.
ACCESSION   DASGBY010000029 DASGBY010000000
VERSION     DASGBY010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18649
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.029"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            73..2766
                     /locus_tag="U1396_000767"
     CDS             73..2766
                     /locus_tag="U1396_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellobiose phosphorylase"
                     /protein_id="HEM5341971.1"
                     /translation="MNKVEFIDQNGSFTLKQAQKNHTLYFPLASEKGLKSSITPLLGG
                     DSKISQNSFILEPVSIENLHNNRSTRNVWTCIDGKETISLTGQSSDYDRDIAKEKQHD
                     QVTAGFMWHQLERTDEIANISTSITNFIPVSANIEVMHIRLKNLSNHPRRFSTYVAVP
                     IFGRSADNLRDHRHVTSLLHRIHTTKNGVVVNPTMTFDERGHHPNHLHYYVAGYTGEG
                     HTPVAFYPTVEEFIGESGNFTHPEAVFQHYPGYSDYKIDGREAMGAFRFEEVTLQSGQ
                     ETSYIVLLRITEEDTNIEEALADYSTDTQIQQHLEQTKQYWNNKVNVRFETGQADFDQ
                     WMKWICFQPYLRKIFGCSFLPHHDYGRGGRGWRDLWQDCLSLLLLEPTQVRRMIVNNF
                     KGVRIDGTNATIIGSGEGEFIADRNGITRVWMDHAFWPLLTTKLYIDQTGDTSILTEK
                     VSYFKDRQVKRGTAIDKEWKEENGSQLLTIDGNIYLGSILEHLLIEQLATFYDVGEHN
                     FYRLRDADWNDALDMASERGESVAFTCAYVGSMMDLAHLIRVYASQLEDQTIQLPEEF
                     ETLLSQDLEVYDDYSKKQAVLQKFSEACKHKLSGKTIRVTFAELAVNLIEKANWLREQ
                     IQKTEWLSEDENGWFNSYYDNNGHQVETCHTNHPKMMLTGQVFSIMSYVANDQQIQSI
                     IRSADRHLYAPECGGYRLNTNFNEIKMDMGRMFGFAYGEKENGAVFSHMTTMYANALY
                     RRGYAKAGWKALKSLANTALDYGTSRIYPGIPEYFRADGKGLYHYLTGAASWYLYTML
                     TEVFGFQGNLGNLILYPKLVAEQFNQQNLAQVTTTFAGKTFILTYHNPLRKEYGDYVI
                     SQAYINGIDLPISDDAYATLSKEKIEKLDSNSIHQITITLS"
     gene            2786..5197
                     /locus_tag="U1396_000768"
     CDS             2786..5197
                     /locus_tag="U1396_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetylchitobiose phosphorylase"
                     /protein_id="HEM5341972.1"
                     /translation="MQYGYFDDKKKEYIITNPATPAPWVNYLGSPEYGAIISNNAGGY
                     SFATSGANGRILRYIFNHMDQPGRYIYIRDNDSKDYWSASWQPVGKDLLDYSIQCHHG
                     LGYTTMNAKYSSIATSTTYYVPKDQTYEVWAITLTNHSNQTRNLTVSGYAEFTNHGNY
                     EQDQVNLQYSLFISRTKFATNKIVQQLHGNLDSLKDEDQVDEKNVTERFFGLAGAQIS
                     SYCGDKQEFLGSYNGYHNPQGILSGHLGNILNTSENACGALSSQVILKPGQSKTIAFI
                     LGEKTQEEADRILHRFTNTEKEIKDDLLALKELWNSRLANLQVKTPSSEFNSMLNIWN
                     AYNCYMTFIWSRAASYIYCGLRNGYGYRDTVQDIQGIIHLHPEMAVDKIRFMLSAQVN
                     NGAGLPLVKFTHNAGHEDTPDDPSYVQETGHPAYRADDALWLFPTIYKYITETGNIDF
                     LDEVIPYANHGKATVYQHLQAAIDFSINHLGPHGLPAGLHADWNDCLRLGANGESSFV
                     ALQFYYALSIIKEFAVEKNDTAYLKQIEQLQEEYYSKIQHLCWDRDRFIRGFTENGEK
                     IGTPEANEANLWLNPQSWSVISGLANPDQAKLAMNQVFNRLNTQFGAILMDPPYHKEA
                     FDGALAVIYNQGTKENAGIFSQSQGWLILAEALLGNGNRAFNYYLENSPAAQNTIAEI
                     RKLEPYCFGQFTEGKDSPHFGRSHVHWLTGTASTMMVASVEGILGIRPTLDGIRLSPA
                     IPKEWPEVQITKQFRGKTLHITISNPHKKEAGCSSLILNGVEIDGNYIDQSLLKEENS
                     ILLTL"
     gene            complement(5302..5562)
                     /locus_tag="U1396_000769"
     CDS             complement(5302..5562)
                     /locus_tag="U1396_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM5341973.1"
                     /translation="MSIELYKVRQGKIVSGVLAGIAHKLGWESWITRAIFIAGLLLGK
                     SFLLLIALYIAAAYFLPYKEDRDAERYGTGPRKIKEAEKIHK"
     gene            complement(5552..6313)
                     /locus_tag="U1396_000770"
     CDS             complement(5552..6313)
                     /locus_tag="U1396_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5341974.1"
                     /translation="MTQKREERLIELYEKGVLTKEEARACFKEMNQEPDFLFVEEKVK
                     LNFTLPSFKVFASSKLKQSYSFEGIESLFLKLSEGRLTLAKSKNNQISVEICYNQDAP
                     EDKLPRLYVEKKGLYFHSSLACRLTINLPQEWMSVLDLELGQADARLDYLPFEDISIR
                     SSRDKKQQDIRLTTCGGYPQHLYVQLAQAPLTLQTGKGQGIRGQIESQSGHVLVNRKK
                     KNSPYQFEKSGNDLLFLKVQTGQGGFYVKGIKDVN"
     gene            complement(6383..6817)
                     /locus_tag="U1396_000771"
     CDS             complement(6383..6817)
                     /locus_tag="U1396_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HEM5341975.1"
                     /translation="MDLNKYVQEVSLRDFGKEFRHVAIWNRRLRSTGGRFFPRDGHLD
                     FNPKHLEEQGLEVFRKIVRHELCHYHLYFEKKGYRHGDRDFKELLAAVDGLHYAPKLE
                     QAAKPSLLYTCQSCGQVYQRKRRIDLKKYRCGKCRGKLTLKE"
     gene            complement(6804..8960)
                     /locus_tag="U1396_000772"
     CDS             complement(6804..8960)
                     /locus_tag="U1396_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEM5341976.1"
                     /translation="MEEKYLKIAQELGVSLKQIDTVLSLTAEGNTIPFIARYRKDVTG
                     NLDEVVIKSIIDRDKALTALADRKATVLAKIEEQGKLTDQLRQAIEEAEKLADVEELY
                     LPYKEKRRTKATVAREAGLFPLARLILQNVADLEEQAASFICEGFDTAQACLAGAVDI
                     LVEAISEDNKLRAWVYHEVQTNSSLTSELKDQEADEKEVFQIYYDFSEKVAKMQGYKT
                     LAINRGEKLGVLKVSFEHNVDKMVRFFELRFPQSNSYIKDVIQQAIKKKILPAMERRI
                     RTELTEEAEEGAIQLFSKNLRNLLLVSPLKGKIVLGFDPAFRTGAKLAVVDQTGKLLT
                     TQVIYPVEPAGQRQIAQAKKDLADLIGQYQVEIIAIGNGTASRESEAFVADLLKDFPD
                     VSYVIVNESGASVYSASELARYEFPDLPVEKRSAISIARRLQDPLAELVKIDPKSIGV
                     GQYQHDVNQKSLSESLDFVVDTVVNQVGVNVNTASPALLAHIAGLNKTISENIVKYRE
                     ENGALTSRQQLKKVPRLGDKAFEQAAGFLRIPNATNFLDNTGVHPESYKAVENLLELL
                     AIDHLDEAAQEKLKQVAIADTAEKIGVGQETLKDIIADLLKPGRDLRDDFEAPVLRQD
                     VLDVKDLVVGQELQGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQALPH
                     PSEVLAVGEIVTVWVVEVDIKRNRIGLSLLKPNGSE"
     gene            complement(9042..9884)
                     /locus_tag="U1396_000773"
     CDS             complement(9042..9884)
                     /locus_tag="U1396_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5341977.1"
                     /translation="MTRYTFSNGVTVPKIGFGTWQIPDGEVAYGAVSYALEAGYRHID
                     TAQIYGNEASVGRAIADSGLAREDIFLTTKVWNDKIGYEDTLASVEESMQKLQVDYLD
                     LLLIHWPNPKAIRDSIGWKERNAQVWKALEELYRAGKVKVIGVSNFMEHHLEALLETA
                     EIIPMANQIMLAPGTPQSELVAYCKAKGILLEAYSPFGTGSLFQSQEAADLAKEAGCS
                     VAQLALAWSLDKGFLPLPKSTSPENIKANLEIDGLAISPTAVAKLDKLEGVKGRLDPD
                     QAEF"
     gene            complement(10000..10515)
                     /locus_tag="U1396_000774"
     CDS             complement(10000..10515)
                     /locus_tag="U1396_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HEM5341978.1"
                     /translation="MNTSKWTARDMAEIALVAAIYVALTLTPPLNAISFGAVQFRLSE
                     MLNFLAFYNRKYIIAVTIGCMISNLIGFGVIDLFVGGFSTLIFVTLGVILFEKYKKDY
                     LFGGLFNKAFFYFSFFFAATMFTIALELKVLYDLPFFLTWLTTAAGELLSLLVGAVVI
                     DKLSKKINFEK"
     regulatory      complement(10513..10615)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01054"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class II; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF01054"
     gene            10644..11081
                     /locus_tag="U1396_000775"
     CDS             10644..11081
                     /locus_tag="U1396_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM5341979.1"
                     /translation="MKKLFYQLINNEVILYLIAGVAATLVYMVTRMGLFLVIPSILLV
                     TLLANAVAILFAFWTNDRFVFKQAREGWPQRLVKFVSARIATLVMDMALAYLLVQAYP
                     QLIGQFVNHDLTLVNAISTLFSQVLVIVLNYVLSKLFVFKDKK"
     gene            complement(11241..12170)
                     /locus_tag="U1396_000776"
     CDS             complement(11241..12170)
                     /locus_tag="U1396_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEM5341980.1"
                     /translation="MKKTKIVEGLKTFCSTFFSFYRSADSDVTSVAVAYYLLISIFPI
                     LLTLANLLPYYPFDVDMILSVVAEFVPDKLYPSVSSFITSVLTKPSSSWLGISILTTL
                     WTLSRSMTILQKAFNKAYGINEHRDFIIGHLIGIFLGIGLQVIILLSITLLTFGQAVF
                     SYINKLVPIEDAWLKGLLSQTQLVGLMALFAALVMLYFFLPNVRIKKVRYVFPGTLFV
                     LLTMTSIGKLFSIYVDNYANKLLDFRIVTAVVFLVFMLWFIFMAQVLIIGAMINATVQ
                     SMQVEEFHARDGDIVSILNRLKARFTAIDKEWE"
     gene            complement(12218..13078)
                     /locus_tag="U1396_000777"
     CDS             complement(12218..13078)
                     /locus_tag="U1396_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl aminopeptidase"
                     /protein_id="HEM5341981.1"
                     /translation="MITIKSQREIDAMNRAGDVLAGIHIGLREIIKPGVDMWEVEEYV
                     RKTCKEKNVLPLQIGVDGELMDYPYATCCGLNDEVAHAFPRHYKLKEGDLLKVDMVLS
                     EPLDKAVVDVSKLNFNDVKAMKKITQTYRGGCADSCWAYAIGQVSEEVQNLMDVTKEC
                     LYRGIEQAVVGNRIGDIGAAIQEYAEGLGYGVVRDLVGHGVGPTFHEEPMVPHYGTKG
                     RGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVI
                     LTSQGEEGTY"
     gene            complement(13075..13647)
                     /locus_tag="U1396_000778"
     CDS             complement(13075..13647)
                     /locus_tag="U1396_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5341982.1"
                     /translation="MTLWTRLAKFAYFETDRLYLRPFSFEDGESFYEIVANPENLPFI
                     FPALEDRNIAFSTMVEKFMRSPLGNWALVDKYSERMIGALCFEKVDERQLSAELSYFL
                     KKDYWRRGLMTEAVRTLVYLAFYEFGLRELVIVTHEENVASQMVAKKAGLVQVAQYRG
                     SDRYSHKTRNYLKFSLKRAEFSLEMYEENE"
     gene            complement(13742..15001)
                     /locus_tag="U1396_000779"
     CDS             complement(13742..15001)
                     /locus_tag="U1396_000779"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM5341983.1"
                     /translation="MRKIVINGGKTLKGSVTVSGAKNSVVALIPAIILADGIVTLDGV
                     PAISDVDSLVDIMETMGATVKRDGETLEIDPRGVKDMPMPFGKINSLRASYYFYGSLL
                     GRFGQAVVGLPGGCDLGPRPIDLHLKAFAAMGAETTYEGDYMRLATNGQRIQGAHIFM
                     DVVSVGATINTILAAVKAEGRTVIENAAREPEIIDVATLLNNMGARIRGAGTDIITIE
                     GVDSLKGTRHQVIPDRIEAGTYIALAAAVGEGIRIDNVLYEHLESYIAKLEEMGVRMT
                     ISEDSIFVEKQEKLKAVSVKTSPYPGFATDLQQPITPLLLKAEGTGTIVDTIYEKRVG
                     HVQELANLGAKISTRNNHIAFEGPNQLTGTSVKATDLRAGAAMVIAGLMAQGRTEITN
                     IEFILRGYSNIIDKLTELGADIQLIED"
     gene            complement(15149..15763)
                     /locus_tag="U1396_000780"
     CDS             complement(15149..15763)
                     /locus_tag="U1396_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5341984.1"
                     /translation="MKALIVFAHPRKESFTHALVDRVAEALLENGAEVVIRDLYEIGF
                     DPVLRGEDTIHIEDGKFIRQATVFPADVQVEMDLIAESDLLVYIFPSWWNGMPAIMKG
                     YVDRVFQHGFAYSFESDEPRKLFSTKKAIFFTPTGQPQNADGSLTPIDQAMKSLTSEW
                     LFNSNGAQVIDHIFYGRVPYLTREELELYLVDAREQIQRIFHKL"
     gene            complement(15794..16984)
                     /locus_tag="U1396_000781"
     CDS             complement(15794..16984)
                     /locus_tag="U1396_000781"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEM5341985.1"
                     /translation="MSERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAE
                     TAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSP
                     DIARGVNEALETRQDASQDPLDLIGAGDQGLMFGFAVDETPELMPLPISLSHKLVRRL
                     AELRKSGEIAYLRPDAKSQVTVEYDEDNQPVRVDTVVISTQHDPEVSQEQIRQDVIER
                     VIKEIIPAHYLDDQTNYFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFS
                     GKDATKVDRSASYAARYIAKNIVAAGLAKKAEVQLAYAIGVAHPVSVRIDTFGTSTVA
                     ESKLEAAVRQIFDLRPAGIIQMLDLNRPIYRQTAAYGHMGRTDIDLPWEKLDKVEALK
                     TAVL"
     gene            complement(17707..18174)
                     /locus_tag="U1396_000782"
     CDS             complement(17707..18174)
                     /locus_tag="U1396_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine/deoxycytidylate deaminase family
                     protein"
                     /protein_id="HEM5341986.1"
                     /translation="MSTNRLAWDEYFAAQALLIANRATCKRAKVGAVLVKDNKVIATG
                     YNGSVSGTEHCLDQECLMIDGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNC
                     SKQLLQVGCKRVVYINEYRMDDYAQYLYKEKGCELVHLPLEVVKQAIADTEFI"
     gene            complement(18231..>18649)
                     /locus_tag="U1396_000783"
     CDS             complement(18231..>18649)
                     /locus_tag="U1396_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4238 domain-containing protein"
                     /protein_id="HEM5341987.1"
                     /translation="LIKDITIELIAQHDMLDRLAKYIENRTWLFYVNNSEVPFVTSDN
                     PALMYNFTTNSINREDVGIGRRDTIIYYPLTSRVLLELLPQNDNCKHFDNFIMEIGNE
                     KLKFIKSLNTLQLLGSHSQVFMHPRYSFNESTFYHF"
BASE COUNT         5740 a         4217 c         3434 g         5258 t
ORIGIN      
        1 tcttattttt tataattact gtttacctta caattaaact atcttaacga cctatattca
       61 gaaaggattc ttatgaacaa agtagaattt attgatcaaa atggtagctt tacattgaaa
      121 caggctcaaa aaaatcacac actctatttt cctcttgcat ccgaaaaagg attaaaaagt
      181 tccatcacac cattattagg tggagattca aaaattagcc aaaatagctt tattttagaa
      241 ccggttagta ttgaaaatct ccataataac cgctccaccc gtaatgtatg gacctgcatt
      301 gatggaaaag aaacgatttc cttaactgga caatcttccg attacgatag agacattgct
      361 aaagaaaagc aacacgacca agtgacggct ggatttatgt ggcatcaatt agaacgtacg
      421 gatgagattg ctaacatatc aactagtatt acaaatttca taccagtttc agccaatatt
      481 gaagtcatgc atattcgatt gaaaaatctt tccaatcatc cgagacgatt ctctacttat
      541 gtggccgttc ctatttttgg aaggagtgct gacaatctgc gtgatcaccg ccatgtaact
      601 tcattattgc atcgtattca cacaactaaa aatggggttg ttgtcaatcc gaccatgacc
      661 tttgacgaac ggggacatca cccaaatcat ttgcactatt atgtagctgg ttatacaggt
      721 gaagggcaca ccccagtagc attttaccca actgtagagg aatttattgg agaaagtggt
      781 aactttactc atcccgaagc tgtttttcaa cactatcctg gttattctga ttataaaata
      841 gatggaagag aagcaatggg agcctttcgc tttgaagagg ttactctcca atctgggcaa
      901 gaaacttcct atattgtttt gttaagaatt acagaagaag atacaaatat tgaagaggct
      961 ttagctgatt actcaactga tacacaaatt caacaacatt tagaacaaac taagcagtat
     1021 tggaacaaca aagtgaatgt gcgatttgaa acaggccaag ctgactttga tcaatggatg
     1081 aaatggattt gtttccaacc atacttgaga aaaatttttg gatgttcatt cctcccgcac
     1141 catgactatg gaagaggagg ccgaggttgg agagacctct ggcaagattg tctctcactg
     1201 ttactattag aacctacaca agttcgacgt atgatagtca ataacttcaa aggtgttcgg
     1261 atagatggaa caaatgcgac gataattggc tcgggagaag gagaatttat tgcggaccga
     1321 aatggtatta cccgtgtttg gatggatcat gctttttggc cactgcttac tacaaaactc
     1381 tatattgacc aaacaggaga tacatctatt ctgactgaaa aagtttccta tttcaaagac
     1441 agacaagtaa aacgtggcac agccattgac aaagaatgga aggaagaaaa tggttcacag
     1501 ttgcttacta tagatggaaa tatttactta gggagcattc tggaacattt actgattgaa
     1561 caattggcta cgttttatga tgtcggtgaa cacaattttt atcgattacg tgatgcagat
     1621 tggaatgatg ctttggatat ggctagcgaa agaggggaaa gtgtagcatt tacctgtgcc
     1681 tacgttggca gtatgatgga tttagctcat cttattcgag tttatgcaag ccagctagag
     1741 gatcaaacaa tacaattacc agaagagttt gaaacactgc tttctcaaga cctggaagtt
     1801 tatgatgatt attcaaaaaa acaagctgta ctacaaaaat tctctgaagc ttgcaaacac
     1861 aaattaagcg ggaaaaccat ccgtgttaca tttgccgaac tcgcagttaa tctgattgag
     1921 aaagcaaatt ggttgcgaga acaaattcaa aaaaccgaat ggttaagtga agatgagaat
     1981 ggatggttta acagttatta tgataataat ggccatcaag tagagacttg ccacaccaat
     2041 catccaaaaa tgatgttgac tggacaggtc ttctctatca tgagctacgt agcaaatgac
     2101 caacagattc agtctatcat tcgtagcgca gatcgccatt tgtatgctcc tgaatgcggt
     2161 ggttacagac tgaacacaaa ctttaatgaa ataaaaatgg atatgggccg gatgtttggt
     2221 tttgcatatg gagaaaaaga aaacggagct gttttttctc atatgacgac tatgtatgct
     2281 aacgctttat atcgtcgtgg ctatgcgaaa gctggatgga aagcattaaa atctttagca
     2341 aatactgcat tggattatgg cactagccga atctatccag gaattccaga atatttccga
     2401 gcagatggaa aaggcctcta tcactacctg actggagctg caagctggta tttgtatact
     2461 atgctaacag aggtgtttgg ttttcaagga aatcttggga atctcattct ctatccaaaa
     2521 cttgttgctg aacaatttaa tcaacagaac ctagcccaag taacaacaac ttttgctggc
     2581 aaaaccttta tcctcaccta tcataatcca ttaagaaaag aatatggtga ctatgttatc
     2641 agtcaggcct atatcaatgg aatagacctt ccaatttcag atgatgccta cgccacttta
     2701 tcaaaagaaa agattgagaa attggattcc aacagcatcc atcaaatcac cattacactc
     2761 tcttgaatac tcgaaaggaa atattatgca atacggatac tttgatgata agaaaaaaga
     2821 atatattatt accaaccctg ctactccagc cccttgggtc aattatctag gttctccaga
     2881 atatggtgca atcatttcaa acaatgctgg tggctatagt tttgcaacgt ctggtgcaaa
     2941 tgggcggatt ctgcgatata tatttaatca tatggaccaa ccaggacgtt atatctacat
     3001 aagagacaat gatagcaaag actattggtc tgcatcctgg cagcctgttg gaaaagattt
     3061 gctagattac tcgattcaat gtcaccatgg attaggctat acaactatga atgcaaaata
     3121 cagtagcatt gcaacgagta ccacctatta tgttcctaaa gatcaaacct acgaagtatg
     3181 ggccataacc ttaaccaatc attcaaacca aacaagaaat ctcactgtta gtggatatgc
     3241 tgaatttaca aatcatggga attacgaaca ggatcaagta aatctacaat actctctttt
     3301 tattagtcga acaaaatttg cgaccaataa aatagttcaa caactccatg gaaaccttga
     3361 ttccttgaaa gatgaagatc aagttgatga aaaaaatgtc actgaaagat tctttggatt
     3421 agctggcgct caaatatcat cttactgcgg cgataaacaa gaattcttag gatcctataa
     3481 tggctatcac aatccacaag gaatcctttc gggacatcta ggaaacattc ttaataccag
     3541 cgaaaatgcc tgcggtgcct tatctagtca agtgatttta aaaccaggcc aatctaaaac
     3601 aatagctttc atccttggag aaaaaacgca agaggaagca gatcgaatac tccatcgatt
     3661 cactaacact gaaaaggaaa tcaaagatga tctcctcgca ttaaaagaac tttggaatag
     3721 tcgattagca aatttacaag ttaaaacacc tagctcagaa ttcaattcaa tgcttaacat
     3781 ttggaatgcc tataactgtt acatgacctt tatctggtca cgcgcagctt cctatatcta
     3841 ctgtggattg cgtaatggct acggctatcg agatactgtt caagatatac aaggtataat
     3901 ccacctacac cctgaaatgg ccgttgataa aataaggttt atgctgtccg cccaagtaaa
     3961 caatggagct ggccttccac ttgtaaaatt tacccataat gctggacacg aagatactcc
     4021 agatgaccct tcatatgttc aagaaacggg acaccctgca taccgagccg atgatgctct
     4081 ttggctcttc ccgaccattt ataaatacat aactgaaaca gggaatattg actttctgga
     4141 tgaagttatt ccatacgcaa atcatggaaa agcgacagta taccaacatc ttcaagcagc
     4201 tattgatttt tcaataaatc atctgggtcc acatggatta ccagctggac tacacgctga
     4261 ctggaacgat tgcttgcgac ttggagcaaa tggcgaatct tcatttgttg cgctacaatt
     4321 ctattatgcc ctttctatca tcaaagaatt tgcggttgaa aagaatgata cagcttattt
     4381 aaagcaaata gaacaacttc aagaggaata ctattcgaaa attcaacatc tatgctggga
     4441 tagagacaga tttatccgtg gcttcactga gaatggggaa aaaataggga ctcctgaagc
     4501 aaatgaagct aatctttggt taaatcctca gagttggtca gttattagtg gtttagcgaa
     4561 cccagatcaa gcgaaactag ctatgaatca agtttttaat cgcttaaata cacaatttgg
     4621 tgctattttg atggatcctc catatcataa ggaagccttt gatggagcac ttgcagtcat
     4681 ctataatcaa gggacaaaag aaaatgctgg catcttttcc caatcacaag gttggctcat
     4741 cctagcggaa gccttattgg gaaacggcaa tcgagctttc aactattatt tagaaaactc
     4801 tccagccgct caaaatacta tagctgagat tcgtaaacta gaaccttact gttttggtca
     4861 atttacagaa ggcaaagaca gtcctcactt tggtagatca cacgttcact ggctaacagg
     4921 tactgcttca accatgatgg ttgcgagtgt agagggaatt ctaggaattc gaccaacact
     4981 tgacggtatt cgcttatcac ctgccattcc aaaagaatgg cctgaggtac aaattactaa
     5041 acagtttcga ggaaagacgc tacatattac aatctctaat cctcataaaa aagaagctgg
     5101 ctgtagctct ctaatcttaa atggagtaga aattgatgga aactacattg accaatcact
     5161 actgaaagag gaaaattcaa ttttactaac cctctaattc aaacttcctc cctccccact
     5221 ctttaagaga atggggagtt ttattatcca gatagcaaaa agaaaaagac catcaaacga
     5281 taatctttta caaatacaat gttacttatg tattttttca gcttctttta tcttacgtgg
     5341 acctgttcca tagcgttccg cgtccctatc ttccttataa ggtaaaaaat aagctgctgc
     5401 aatatagaga gcaatcagaa ggaggaagga tttgcctaag aggagacctg caataaatat
     5461 cgcgcgtgtt atccaggatt cccagcccaa tttatgcgct atgccggcaa gaaccccaga
     5521 tactatcttc ccctgcctta ctttatacaa ttcaattgac atcttttatt cctttcacgt
     5581 aaaagccccc ttgacctgtt tgtaccttca agaaaagtaa atcattgcca gatttttcaa
     5641 actgataggg actatttttc tttttccggt taaccaagac atgacctgat tgcgactcaa
     5701 tctgcccccg aattccctgg cctttgccag tttgtaaagt caagggagcc tgagctagtt
     5761 gcacatacaa gtgttgggga taaccaccgc aagtcgtcaa gcgaatatcc tgttgttttt
     5821 tatcccttga actgcggata gaaatatctt caaatggtaa gtaatccaag cgagcatctg
     5881 cctgaccaag ttccaaatcc agcaccgaca tccattcctg aggcaagttg attgtcaaac
     5941 gacaggccaa gctactgtga aaataaagcc cctttttttc aacataaaga cgaggaagct
     6001 tatcttctgg tgcatcttga ttgtagcaaa tctccacact aatctgattg tttttagact
     6061 tagccaaagt tagacgtccc tcagataatt ttaaaaagag tgattcaatc ccttcaaaac
     6121 tataagattg tttcaatttg gaggaagcaa agaccttaaa acttggcaag gtaaaattca
     6181 attttacttt ttcttccaca aaaagaaagt ctggttcttg attcatttcc ttaaaacagg
     6241 cacgcgcctc ttccttggtc aagacacctt tttcatataa ctcaattaag cgttcttctc
     6301 tcttttgcgt catagactca cctcaattct actctagtat atcacatttc tccacaaaaa
     6361 aatcagcccg aagactgatt ctctattctt tcaaagtaag tttgccccta cacttcccac
     6421 atcggtattt ttttaggtca atgcggcgct tgcgctggta gacttgtcca caggactgac
     6481 aggtatacag caagcttggc ttggcagctt gttccagttt gggagcatag tgcaggccgt
     6541 ccaccgcagc caacaattcc ttgaaatccc tgtctccgtg ccgatagcct ttcttctcaa
     6601 agtagagatg gtagtggcag agctcgtggc ggacaatctt ccgaaagact tctaaacctt
     6661 gctcctccaa atgcttggga ttgaaatcca aatggccatc ccttggaaaa aagcgaccac
     6721 ctgttgagcg taatcgcctg ttccagattg ctacatgccg aaattcctta ccgaagtctc
     6781 gcaaggagac ttcttgcaca tacttattca gatccatttg gtttcaaaag gctaagaccg
     6841 atacgatttc gtttgatatc cacttcaacc acccagacgg ttacaatttc cccaactgcg
     6901 agaacttcgc ttggatgtgg caaggcttgt tggcgtccat ttttatctcg tttgcgtttg
     6961 accatgcgtg aaatgtggac cagaccatcc tcgtggacac cgatgtccac aaaggctcca
     7021 aagtccacaa tattgcggac cgtaccttgc aattcctgtc cgactaccag gtccttgaca
     7081 tccaagacat cttgacgaag gactggtgct tcaaagtcat cccgtaaatc acgacctggc
     7141 ttgagcaagt ctgcgatgat gtccttcaag gtttcctgac cgacaccgat tttttctgcc
     7201 gtatctgcga tagccacctg ctttaatttt tcctgcgcag cctcatctaa gtggtcaata
     7261 gctagaagtt ctaacaggtt ttccacagcc ttgtaagact cggggtgcac gccagtattg
     7321 tccaaaaaat tagtcgcatt aggaattcgc aagaaaccag ctgcctgctc aaaggccttg
     7381 tcacccagac gaggcacctt tttgagttgc tgacgagagg tcagagcacc attttcctcg
     7441 cggtacttga cgatgttctc cgaaatggtc ttgttaagac cagcaatgtg agccaaaagg
     7501 gcaggactgg ccgtattgac attgacaccg acctggttga ccaccgtatc gaccacaaaa
     7561 tccagacttt cagacagaga cttctggttg acatcgtgct ggtactggcc gacaccgata
     7621 gacttgggat caattttgac cagctcagcc agagggtctt gcagacggcg ggcgatggaa
     7681 atggcagagc gtttttccac agggaggtct gggaactcgt atcgcgccag ttcagaagct
     7741 gagtaaacag atgctccgct ttcattgacg atgacgtaag aaacatctgg gaaatccttg
     7801 agtaaatcag cgacgaaagc ctccgattca cggctggccg ttccatttcc gatagcaatg
     7861 atttccactt ggtattgccc aatcaggtct gccaagtctt tttttgcctg agcaatttgt
     7921 cgctgaccag ccggctccac aggatagatg acttgtgtag tcaagagttt tccagtctgg
     7981 tctacaaccg ccaacttagc ccctgttcga aaggcagggt caaaaccaag gacaatcttg
     8041 ccttttagag gagatacaag gagcagattt cgtaggtttt tagagaagag ctggatagct
     8101 ccttcttctg cttcttctgt caattctgtc cgaatacgac gctccatggc aggtagaatt
     8161 ttcttcttaa tagcctgctg gatcacatcc ttgatgtagc tattagactg tggaaaacgt
     8221 agctcaaaga aacgaaccat tttatccaca ttgtgttcaa aagaaacctt gagaacgcct
     8281 aatttctcac cgcggttaat agccaaggtc ttgtagcctt gcatcttcgc cactttctca
     8341 gagaaatcat aataaatctg aaagacttct ttttcatctg cttcttgatc ttttagctct
     8401 gaagtaaggc ttgaattggt ctgtacttca tggtagaccc aggcccgaag cttattgtct
     8461 tctgagatag cttccaccaa aatatccaca gccccagcca aacaagcctg agcagtatca
     8521 aaaccttcac agatgaaact agcagcctgt tcttccaagt cagccacatt ctgcaaaatt
     8581 agacgagcca gcgggaacag tccagcctca cgcgccaccg ttgccttggt ccgacgtttt
     8641 tccttataag gcagatagag ctcttccaca tctgccaact tttccgcttc ctcgatagcc
     8701 tgacggagct ggtctgtcaa ttttccttgt tcttcaatct tggcaaggac agtagcctta
     8761 cggtcagcga gagcagtcaa ggccttatcc cgatcaatga tagacttgat gaccacctcg
     8821 tccaagttcc ccgtcacatc cttccgataa cgagcgataa aaggaatggt gttgccttca
     8881 gccgtcaaag agagaaccgt atcaatctgt tttaaactaa cgcccaattc ctgagcaatt
     8941 ttcaaatatt tttcttccat agctactatt atagcatgaa agcggtacaa atggctcaat
     9001 agaaaaagca cgtagataaa ctacatgctc tcaatagcta attaaaattc agcctgatcc
     9061 gggtcaagtc gaccttttac tccttctagt ttatccaact ttgcaactgc tgtcggacta
     9121 atagccaagc catcaatttc caaattcgcc ttaatatttt ctggactagt tgatttcggg
     9181 agagggagaa agcctttatc taaagaccaa gctagtgcca gctgagcaac actacaacca
     9241 gcttctttag ccaaatcagc tgcttcttgg ctttggaaaa ggcttcctgt accaaatggg
     9301 ctataggcct ccaagagaat ccctttggct ttgcagtaag caactaattc tgactgagga
     9361 gttcctggag ctaacataat ctgattagcc atcgggataa tctcagccgt ttccagcaaa
     9421 gcttctagat gatgttccat aaagttagaa actccaatta ctttcacttt tccagcacga
     9481 tagagctctt ctaatgcctt ccaaacttgg gcattgcgtt ccttccagcc aatgctgtcg
     9541 cgaatagcct ttggatttgg ccaatggatc agtaacaaat ccagataatc cacctgaagt
     9601 ttttgcatgg attcttctac tgaagcaagg gtatcttcat agccaatctt gtcattccaa
     9661 accttagttg ttaaaaaaat gtcctcacga gctagaccac tatcagctat agctcgacca
     9721 acactagctt cattgccata aatttgagca gtatcaatat ggcgataacc agcttccaat
     9781 gcataagaaa ccgcaccgta cgccacttca ccatcgggta tctgccaagt accaaaacca
     9841 attttaggaa cagttacacc atttgaaaac gtatatcttg tcataaaaga cctcctattt
     9901 cttctatccc cagtataaac taaattgtca atcaatacaa aataatgcga cctaaaaata
     9961 aaagacaccc gaaagtgtct gctcacattt attgtatact tacttttcaa aatttatttt
    10021 cttggatagt ttatcgataa caacagctcc aactaataga gaaagcaatt ctcctgctgc
    10081 tgttgtcaac caagttagaa agaatggtag atcatataag acttttaatt ctaaagcaat
    10141 ggtaaacata gttgccgcaa aaaagaatga gaaataaaag aaagccttgt taaataatcc
    10201 accgaataga tagtccttct tgtatttttc aaacagaata actcccaacg taacgaaaat
    10261 taatgtcgag aatccaccca caaagaggtc aatcacacca aaaccaatca agttggaaat
    10321 catgcagcca atggtcacag cgataatata cttacgatta taaaaagcca agaaattgag
    10381 catttcagac aaacgaaact gaacagcccc gaaggaaata gcattcaatg gcggtgtcaa
    10441 ggtaagagcg acataaatcg ccgcaacaag agcaatttct gccatatctc tggcagtcca
    10501 tttagatgta ttcataaaat tctcctttag caaaaaagct taaaatatgc ttgggtaaag
    10561 tgagcaagtc ccaagggtca ttgaatttgt caacaacgtt gattagtata gcatattttt
    10621 gctaaaaatg atagactagt cctatgaaaa aactatttta tcaactcatc aataacgaag
    10681 ttattctcta tttgattgca ggtgtggcag caacccttgt ctatatggtc actcgaatgg
    10741 ggctattttt agtcattcct tccattctat tggttactct tttagccaat gcagtagcta
    10801 tcctctttgc cttttggacc aacgaccgtt tcgttttcaa acaagccaga gagggttggc
    10861 ctcagcgatt ggtcaagttt gtatctgccc gcatcgcgac cttggtcatg gatatggctc
    10921 tagcctattt attagtacaa gcctacccac aattgattgg gcagtttgtc aaccatgatt
    10981 tgacacttgt caacgccatt tccactctct tctctcaagt cttggtcatt gtcctaaact
    11041 acgttttaag taaattattt gtatttaaag ataagaaata aggttgggca aaaagaccaa
    11101 cctcgcttct cagagttcgt gtcaacatct cagcgcagtg gttgattggc agatttgttc
    11161 gcgtttcaca ctccaaatct ggcctaatca actgtgcggg ggtgagaaga cgaactcatt
    11221 tttgaaaata gagttctttc tcactcccat tctttatcta tcgctgtaaa tcttgccttt
    11281 agcctattca agattgaaac aatatcccca tctctggcat gaaactcttc tacctgcata
    11341 ctttgaaccg tagcattaat cattgcacca atgatgagta cctgagccat aaaaatgaac
    11401 caaagcataa aaacaagaaa gacgacagct gttactattc taaaatccag caacttatta
    11461 gcataattat caacataaat cgaaaataac tttccaatag aagtcatcgt caacagaaca
    11521 aacaacgttc ctggaaaaac atatcgaact ttttttatcc gaacatttgg caaaaagaaa
    11581 taaagcataa ccaaggcggc aaacagagcc attaaaccta ctaactgtgt ttgactaaga
    11641 agtcccttca gccaggcgtc ttcaatagga accagcttat taatataaga aaaaactgcc
    11701 tgcccgaaag tcaaaagtgt aatacttaag aggataatta cctgcagacc aattcctaaa
    11761 aatatgccaa tcaagtgccc aataataaaa tcacggtgtt cattgatacc ataagcctta
    11821 ttaaaggcct tctgcaaaat agtcatacta cgtgacaggg tccaaagagt tgtcagaatt
    11881 gaaatcccta accacgatga cgacggcttt gttaatacag aagtgataaa agatgaaacc
    11941 gaaggataga gcttgtctgg cacaaattca gctacaaccg ataaaatcat atccacatca
    12001 aatggataat atggcagtaa attcgcaaga gttagaagaa tagggaaaat agaaattaat
    12061 aaatagtaag ctactgcaac gcttgttaca tcgctatcag cagaacgata aaaagaaaag
    12121 aaggttgagc agaatgtttt caaaccttcg actattttgg ttttcttcat tctctcctcc
    12181 ttcctcattc atctattatt cacgaccaca ccgagaatta ataggtccct tcttcacctt
    12241 gactggtcaa aataaccggt ccatctttgg tgatgacaaa ttggtgttcg tattgacaag
    12301 acaagccacc atcaagtgtc ttatgagccc aaccagtctt catatccgta tcaatttccc
    12361 aagtccctgt attaatcatt ggctcaatag tcaaaaccat gccctcacgc aagcgaagac
    12421 cacgaccttt agttccataa tgaggaacca tcggctcttc gtggaaggtt ggtccaacgc
    12481 cgtgacccac caagtcacga acaacaccgt agcccaaacc ttctgcatat tcttgaatgg
    12541 ctgcaccgat atcgccgata cgattgccaa caactgcttg ctcgataccg cggtacaaac
    12601 attccttagt cacgtccatc aagttttgaa cttcctcaga gacctgacca atcgcataag
    12661 cccagcagga atccgcacaa ccaccacgat aggtctgggt gattttcttc atagccttga
    12721 catcattaaa gttgagctta gaaacatcaa ctaccgcttt atccaaaggc tcgctcaaaa
    12781 ccatatcgac cttcagtaaa tcaccttctt taagtttgta atgacgcgga aaggcatgag
    12841 cgacctcgtc attcaatcca caacaagtcg cataaggata atccatcaat tctccatcaa
    12901 caccaatttg gagtggcaaa acattctttt ccttacacgt tttacggaca tattcctcta
    12961 cttcccacat gtccacacct ggcttgataa tctctcgcaa accaatatga ataccagcca
    13021 gaacatctcc agcacggttc attgcatcaa tttctcgttg tgatttaatg gtaatcattc
    13081 attctcctca tacatttcta aactaaattc agccctcttc aagctaaatt ttagataatt
    13141 tcttgtttta tggctatagc ggtcacttcc acgatactgc gcaacctgta ccaaaccagc
    13201 ttttttcgcc accatctgac tggccacatt ttcctcatga gtgacaataa ccagctccct
    13261 cagaccaaac tcataaaaag ctagatagac taaagtcctc actgcttccg tcattaagcc
    13321 tcttctccag tagtcttttt ttaggaaata gctgagctcc gcagaaagtt gacgttcatc
    13381 taccttttca aagcaaagcg caccaatcat cctctccgaa tacttatcaa ctaaggccca
    13441 gtttcccaat ggtgaacgca taaatttttc aaccattgtc gaaaaagcaa tatttctgtc
    13501 ctccaaagct ggaaagataa aaggaagatt ttcgggattt gctacaattt catagaaact
    13561 ttctccatct tcaaaagaaa atggtcgtaa atacaaacgg tccgtttcaa agtaagcaaa
    13621 cttcgctagt cttgtccaaa gtgtcatagt gtacccaagg ggctgagaat tactcccagc
    13681 cccagatttt tttgttttta aatcgtttac gttttgagaa agtagttctc aattagactc
    13741 tctaatcctc aatcaactga atatctgcac ccaattctgt cagtttatca ataatatttg
    13801 agtaaccacg tagaataaac tcaatatttg taatttctgt acgcccttga gccattaaac
    13861 cagcaataac cattgcggct cccgcacgca aatcggtagc tttaacagat gtaccagtca
    13921 gttgatttgg accttcaaag gcaatatggt tgttacgagt agagattttt gctccaagat
    13981 tagcaagctc ctgcacatga ccaacacgtt tttcataaat cgtatcaaca atcgtaccag
    14041 tcccttctgc cttaagcaat aaaggtgtaa tgggttgctg caagtctgtc gcaaaacctg
    14101 gataaggtga agttttcaca cttaccgcct tcaatttctc ttgcttttca acaaaaatac
    14161 tatcttcaga aatggtcatg cgaacaccca tttcttccaa cttagcgatg taactctcta
    14221 agtgttcata aaggacatta tcgatacgaa taccttcacc aacagcagca gcaagggcaa
    14281 tataagtccc tgcttcaata cggtctggaa tcacttgatg acgtgttcct tttagactgt
    14341 ctacgccttc aatggtgata atatctgtac ccgcaccacg gatacgtgcc cccatattat
    14401 taagcaacgt tgccacatca ataatttcag gctcacgcgc cgcattttca ataactgtac
    14461 ggccttctgc tttgacagct gctaagatag tattaattgt cgcaccgacg ctgacaacat
    14521 ccatgaagat atgggcccct tgaatacgct gaccattagt tgccaagcgc atatagtcac
    14581 cttcataagt tgtctcagct cccattgccg cgaatgcttt caagtgcaaa tcaatcggac
    14641 gcggtcccaa atcacaacca cctggcaagc caacaacagc ttgaccaaag cgaccaagga
    14701 gggaaccgta aaaatagtag gatgcacgca agctattaat tttgccaaat ggcataggca
    14761 tgtcttttac accacgaggg tcaatctcca aggtttcacc atcacgcttg accgtcgcgc
    14821 ccattgtttc cataatatca actaagctat ctacatccga gattgcaggt actccgtcca
    14881 gagtaacaat cccgtctgca agaataatgg ccggaataag agcaacaact gagttttttg
    14941 caccactaac ggtaaccgac cctttcagtg tttttccacc attaattaca atttttctca
    15001 tactaacatt cactttctta atttgcctaa aaaggcatac gtttcattct atcataaagt
    15061 cttggaaaaa gctagttata tagcatgcaa aaggaccgag ccaatgagct cagttcttca
    15121 tatttacata ctattagtga atctctcttc ataatttatg aaaaattctc tgaatttgct
    15181 cccttgcatc cacgagatac aactccagct cttctctcgt taaataaggt actcgcccat
    15241 agaagatatg gtcaatgact tgagcaccgt tgctattgaa gagccattct gaggtcaagc
    15301 ttttcatcgc ttgatcaatc ggtgtcagac ttccatctgc attttgtggc tgccctgttg
    15361 gcgtaaagaa aatagctttc ttagtggaaa ataatttacg tggttcatca gattcaaaac
    15421 tgtaagcaaa gccatgttga aatacacggt cgacgtaccc tttcataata gcaggcattc
    15481 cattccacca actcggaaat atgtagacta gtaagtcgct ttcggcaatc aaatccattt
    15541 caacttgaac atctgctgga aaaaccgttg cctgacgtat aaatttgcca tcttcaatat
    15601 gaatggtatc ttctccacgt aacacgggat cgaatcctat ttcgtataaa tctcggatga
    15661 caacttctgc tccattttcc agcagagctt ccgccactct atcaaccaaa gcatgtgtaa
    15721 agctttcttt tctagggtgt gcaaagacaa ttaacgcttt cataaacttc tcactaaatg
    15781 gacaactatt tcattacaaa accgcagttt tcaacgcctc taccttgtct aatttttccc
    15841 aaggtaggtc aatgtcggtc cggcccatgt ggccataggc cgcagtttgt ctgtaaatcg
    15901 ggcgattgag gtccagcatc tggataatac ctgctggccg caggtcaaaa atctgacgga
    15961 cagctgcttc tagtttgctt tccgctactg tgctcgtacc aaaggtatcg atgcgaactg
    16021 aaactgggtg agcaacaccg atagcgtaag ccaattgaac ttccgccttt ttagccaaac
    16081 cagctgcgac gatatttttt gcgatgtagc gtgccgcata agatgcagaa cggtccactt
    16141 tggtcgcatc cttaccagag aaggcaccgc cgccatgacg agaataacca ccataggtat
    16201 caacgataat cttacggcct gtcaaaccag agtccccttg aggtccgcca atgacaaagc
    16261 gaccagttgg gttgataaag tagttggttt ggtcatccag ataatgagct ggaatgattt
    16321 ccttgatcac acgttcaatg acatcctgac gaatttgctc ctggctaact tctggatcat
    16381 gctgggtcga aataacgact gtatccacac gaacaggttg attgtcttca tcgtattcaa
    16441 ctgttacctg tgacttagca tctggacgga gataagcaat ttcaccagat tttctcaact
    16501 cggccaaacg acgcaccaat ttgtgactaa gtgaaattgg caacggcata agttcaggcg
    16561 tttcatctac tgcaaaacca aacatgagcc cctggtcacc tgcaccaatc aaatccaatg
    16621 gatcttgact agcatcttga cgagtttcta aagcttcatt gacgcctcgg gcaatatctg
    16681 gcgattgctc tacaagtgac ggatgaaccc caaccgactc agctgaaaaa ccatactcac
    16741 cttttgtata gccaatctcc gcaatggtat cccgtaccac acggttaata tccacatagg
    16801 cagtagttga aatctctcca aacacatgaa cactacctgt ataaacagcc gtctctgccg
    16861 ctacgtgcgc atctggatcc tctgctaaaa tagcgtccaa aatggcatct gaaatctggt
    16921 ctgcaatctt atccggatga ccctccgaaa cagattcaga cgtaaacaac ttacgttctg
    16981 acataaaaat gtccccctta aaatagaata tatgctagaa acctagcggg ttactaaggt
    17041 tacaaagaac tagtcgaaga ctagttcttt gcgaaagaca cctgtcttaa gcaaagggaa
    17101 atttccagat actcaacgag aaagacaata ccagactgta tgaaatcagc cttatttgaa
    17161 gaaaatggtg actgaagtgt agtaaagttt ttacgcttac tattcaatgt taccagcttc
    17221 tttaattgtg tttcaagtat ttctgcaaat attaactagt ctataaacta ccttttcggg
    17281 acttaataac gtttctagta tagcatagat tgaccgacta tcctagcatt ttcttaaaaa
    17341 taaagaggag gctgggcaaa aagcccagga ccactactca gagttcgtgt caacatctca
    17401 gcgcagtggt tgattgggtt taacagtcta gtggactgtt aaaggttgga gataagattt
    17461 gcgaagcaaa tctcagcagt tcgtgtttta cactccaaat ctgaccatta cgactgatgc
    17521 gaacagagtt cgcttcattt ccaacctcca acagtcacta ctctgactgt tggagctatg
    17581 cgggggtggg agtgaaacag tctgaggata gactgtttca gctcaacaac ttaaaacgaa
    17641 aaattgttga cgaactcttc tatgaatggt cgagttcttt ctcactccca ctcttctaca
    17701 aaatcattag ataaattcgg tatctgcaat tgcctgttta accacctcta gaggcaaatg
    17761 aaccaactca cagccctttt ctttatacaa gtactgagca tagtcatcca tgcggtattc
    17821 attgatataa acaacccgct tacaaccaac ctgtaacaat tgcttggagc agttgagaca
    17881 tgggaaatgg gtcacatagg cagtaaaacc ttttggaatt ccccgctccg ctccttgtaa
    17941 aatggcattg acttccgcat gcaaggttct agcgcaatga ccatcaatca taaggcattc
    18001 ctgatccaaa caatgttcgg ttcctgaaac agaaccattg tagcctgttg cgataacctt
    18061 attgtcctta accaaaaccg caccgacctt ggctctctta caggtcgccc gattggcaat
    18121 caaaagtgcc tgagccgcaa aatactcatc ccaagctaaa cgatttgttg acatgatttc
    18181 tcctttatat atttttataa atcactgctc accaccaact atttgtgctt ttaaaaatga
    18241 taaaaagttg attcattgaa tgaatacctt ggatgcataa acacttgact atgtgaacca
    18301 agtaactgta aggtattcaa tgatttaata aactttaatt tttcatttcc aatttccatt
    18361 atgaaattgt cgaaatgttt acaattgtca ttctgaggca atagctcaag caaaacccta
    18421 cttgtcaaag gataataaat aattgtatcc ctccttccaa tcccaacatc ttctcggtta
    18481 attgaattgg tagtaaagtt atacattagc gcaggattat cgctagtcac aaatggaact
    18541 tcggaattat tgacgtaaaa taaccatgtt ctattctcaa tatattttgc taatctatcc
    18601 aacatatcat gctgagcaat caactctatc gtaatatctt ttattaaat
//
LOCUS       DASGBY010000030        18255 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.030, whole genome shotgun sequence.
ACCESSION   DASGBY010000030 DASGBY010000000
VERSION     DASGBY010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18255
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.030"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            25..948
                     /locus_tag="U1396_000784"
     CDS             25..948
                     /locus_tag="U1396_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM5341988.1"
                     /translation="MKKILFSFALLLSLIGLGACRPSQTTEGSSKPRVAVTTSFLNDM
                     VYQLAGDEVERDLLIPAGEDPHLYVAKSSDLSKLQKADLVLYHGLHFEGKMVEALEKT
                     GVAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEELQKLLPAKAEMIQ
                     KNAEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTD
                     SEVANSDMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVTGEGKEL
                     FSDSLAPEGEEGDTFIDMYKHNVKLMVKYLK"
     gene            1502..2272
                     /locus_tag="U1396_000785"
     CDS             1502..2272
                     /locus_tag="U1396_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM5341989.1"
                     /translation="MSAIIELKDVNLAYTASQTMALEDVNLVIPRGSRTAIVGPNGAG
                     KSSLFKVILGLEKPDTGQVRLLGQEAGLERLIAQKVAYIPQSSQVNWQFPATVFEIVL
                     MGRFAHSKGMFRRPTKADRQIVEQALERLKIADLRHRQIDQLSGGQRQRVFLARALAQ
                     EAELYLMDEPLAGIDQATEIMIMDMLKEFQCEGKTSIVIHHDLTTLDAYFDHLVWLHK
                     HVIDSGPMDETLTSENYQATYGIGNGLFLGNAKGGSHV"
     gene            2265..3125
                     /locus_tag="U1396_000786"
     CDS             2265..3125
                     /locus_tag="U1396_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5341990.1"
                     /translation="MFEVFKEYSFWTVALGTVSLAVAASTIGSISVLTKQSLLGDALG
                     HASYPGVIVSFMIFQSRHPLYLLLGAVLSGYLSYVLVHWLRRKGGHSLVNALSLVSAS
                     FFGLGMVLKNAIQGNEAFAGSSQAGLQTYLFGQAAFIQLDDVILIGIISLLALALFTF
                     FYQDYKLYLFDQTFARVIGVRVKYLQQLTMFLMICLIAVGLKLVGAILMSSFLIAPAV
                     FGLMLGKSYHKSLLLAGIVAIGSAFVGTWISSSVSGLSTGPTIIVCLTGLTLSAFVYV
                     TYVRKENGRV"
     gene            3118..3957
                     /locus_tag="U1396_000787"
     CDS             3118..3957
                     /locus_tag="U1396_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5341991.1"
                     /translation="MFEVLLILMVIASSCGLLGSILVVKNQSMLADALSHSVLLGIVL
                     GFFISHSLDSPLLIVGASLFGLLSVLAIDRLHSRKIAHDAATGLVFSFFFAVAVLLIS
                     LFARNVHLDVDLVLQGEVLFAPLHRMDVLAWSLPVSLVKSSLAWLVIVLFFAWAYHRL
                     QVYLFDSNHARLSGLRTRILEMVILILVSLTTVLAFEAIGSMTVIVFLVAPSMAALRW
                     VKSFWQLLLLGQGIAILTVVLGFLVANQLDLTMSGTCAVVSLLVVCSSIILKNTWSRS
                     SDK"
     gene            4013..5905
                     /locus_tag="U1396_000788"
     CDS             4013..5905
                     /locus_tag="U1396_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
                     /protein_id="HEM5341992.1"
                     /translation="MTRLQDDFYEYVNGEWAKTAVIPDDKPRTGGFSDLADEIEKLMI
                     DTTNAWLAGEDVPEDSVLQNFVAFHKQVADYETRDRLGAEPAQALIAEYKALNSFEEF
                     TSKLAEYELAGKPNLMPFGVAPDFMDATTNVLWADSLGIILPDTTYYEEGHEKGAELL
                     KIWRESQEALLPKFGFSDEEIKDLLDKRLELDATIAKYVLSNEEGSEYAKLYHPYEWA
                     DFTALAPELPLDDFFTAILGQTPDKIIVPEERFWQAAKDIYSADNWELLKATLILKAA
                     GAYTAFLSDEIRILAGAYSRALSGTPQAQNQEKAAYNLAQGYFNQALGLWYAGEKFSP
                     EAKADVEAKVAKMIEVYKSRLETADWLAQETRDKAIVKLNVIKPYIGYPEALPERYYK
                     KIVDPSKSLVENAIELNKIDIAHGWSKWNKPVDIKEWGMPAHMVNAYYNPQKNLIVFP
                     AAILQAPFYSLEQSSSANYGGIGAVIAHEISHAFDSNGASFDEHGSLNNWWTEEDYAA
                     FEARTQQVIDQFEGQDSYGAKINGKLTVSENIADLGGIAAALEAAKSEDDFSAEEFFT
                     NFARIWRMKARPEFMQMLASVDVHAPGHLRTNIQLPNFDEFHETFGVQEGDGMWRAKE
                     DRVIIW"
     gene            6008..8509
                     /locus_tag="U1396_000789"
     CDS             6008..8509
                     /locus_tag="U1396_000789"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEM5341993.1"
                     /translation="MSFYNHKEIEPKWQGFWAKNHTFKTGTDAAKPNFYALDMFPYPS
                     GAGLHVGHPEGYTATDILSRYKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPADFTA
                     ENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVE
                     ELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLNDLEEVDWPESIKD
                     MQRNWIGKSTGANVTFKIKDTDKDFTVFTTRPDTLFGATYAVLAPEHDLVDSITSPEQ
                     TEAVAEYKRQASLKSDLARTDLAKDKTGVWTGAYAINPVNGKEIPIWIADYVLASYGT
                     GAIMAVPAHDERDWEFAKQFGLDIIPVLEGGNVEEAPYTEDGAHINSDFLDGLNKEEA
                     IAKMVAWLEENGVGQEKISYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPENELPLV
                     LPKTSDIKPSGTGESPLANLTDWLEVVREDGVKGRRETNTMPQWAGSSWYYLRYIDPH
                     NDEKLADEDLLKAWLPVDIYIGGAEHAVLHLLYARFWHKFLYDLGVVPTKEPFQKLFN
                     QGMILGTSYRDSRGALVATDKVEKRDGSFFNIETGEELEQAPAKMSKSLKNVVNPDDV
                     VEQFGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLLTTKELAAENSGALD
                     KVYNETVKTVTEHIEDLKFNTAIAQLMIFVNAANKEDKLYVEYAKGFVQLIAPFAPHL
                     AEELWQGLTNTGQSISYVAWPTYDESKLVESEVEIVVQIKGKVKARLTVAKDLAPAEL
                     EKVALADEKVQAEIAGQTVVKVITVPNKLVNIVTK"
     gene            8778..10139
                     /locus_tag="U1396_000790"
     CDS             8778..10139
                     /locus_tag="U1396_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5341994.1"
                     /translation="MLKTLKLVTIGGGSSYTPELVEGMILRAHQLPIREWWFVDVEQG
                     AKKQEIVVELARRMVAKAGLDWKIESTLDRREALIEADFVTSQFRVGQLPARYLDETI
                     PLSYGMLGQETNGAGGIFKAFRTIEAYKGIIKDMKDLCPNAWLINFTNPAGIVTEAIA
                     NELHWKKVIGLCNIPIGQKKLAAQILGQSEGDLSTRHIGLNHFHFHEVWDKYGENRTQ
                     VILETLYGDLREETPEAVKNITNLEFPIQLLRTIGMLPCDYHRYYFLEQEMLEDALEQ
                     YRQGNVRAKVVQEVETELFELYKDPQLKDKPKQLELRGGAYYSDVACQIICAIHNDSR
                     EELTVSTVNRGVIPYLPENCVVEVTSIISAQGATPLACPPTPPIVTGYLQLMKQMELV
                     TVQAAMTGDYSLALQAFTLNPLISNGPQAEVLLQDMLLAHENYLPQFAPAIQHIKERR
                     NNQ"
     gene            10136..11536
                     /locus_tag="U1396_000791"
     CDS             10136..11536
                     /locus_tag="U1396_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5341995.1"
                     /translation="MTKDKVFYQFPTNFLWGSSTSGPQSEGIEPGDGKGQNNWDYWYS
                     IEPERFHNKIGPSQTSTFYKHYEKDIDLLVETGHTVFRTSIQWSRFIPTGTGEINQEA
                     VSFYRSVFSLVRAKGIQLFVNLYHFDLPYCLQEKGGWENKEIVRAYEAYARTCFELFD
                     DLVDRWITFNEPIVPVECGYLGNYHYPCKVDAKAAVAVAYHTQLASSLAVKACHEVNP
                     HKKIAIVLNLTPAYPRSEQAEDIKAARIAELFQTKSFLDPSVLGEYPDELVELIDAYG
                     LMPEVSDEELAIIKENRVDFLGVNYYQPLRVQAPTNSWKEGEPLTPEHFFAPYDMPGK
                     KMNPHRGWEIYEKGIYDIAINIKENYHNIEWFVTENGMGVEGEGAFKDNGLIQDDYRI
                     EFIEDHLIELHRAIQEGANCKGYMLWTFIDCWSWLNAYKNRYGLVELDLDTQERIVKK
                     SGKWFKKLSDANGFHR"
     gene            11546..12652
                     /locus_tag="U1396_000792"
     CDS             11546..12652
                     /locus_tag="U1396_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HEM5341996.1"
                     /translation="MVELGFSIYPENYSLEESQAYIKLLHQYGARRLFMSLLQLENGD
                     RTVFELYQKLVDYANQLGMTVIADISPHFIAAQGWDGALMERAAELGLAGIRLDEALP
                     LEEIIEMTHNPHNIKVELNLSTDRTLLSNLLASVANRDNIIACHNFYPHAYTGLSQEH
                     FLEMSSFYYQSGIRTAAFVSAQTASEGPWPLSEGLPTLEDHRFWLLPLQIAWMKATGF
                     IDSILISNQFISEEELQSIQTVLNEDTISLMVDIEEGLTPVEREIVAFDHVYRGDISA
                     YVLRSTMPRVVYKDASVPARSDQAIPVGRGDILIDNDLYGRYKGELQIALKEFTISPK
                     VNKVGRISPDYLPLLRFIKPWQEFKLVIASEHFH"
     gene            12744..14738
                     /locus_tag="U1396_000793"
     CDS             12744..14738
                     /locus_tag="U1396_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5341997.1"
                     /translation="MLSKKEVRLLEALLAKQETFVPSIELAKVLSVSDRTVRTYIHQL
                     TSSLENSGAHILSKQGSGYCLQIERPVEFEMFWQEQLLLKKRLTDLTQLEEAGDRQRY
                     ILNKLLFEDPVQSPECLQRELFIGKTTLHSILADIRKLFIPYQLELLVTRKGIELKGD
                     EPAIRHFIMDYFFDEGNVQSVYGVVETNLLPDIRFTDLMLIVLDECRDAKLRLSDFVM
                     QNLVLHIALLLQRLKIGSGLDRFPIPERIQSSQEYLVAQRIIERIEEMFQVTIPSEEA
                     NYIALHLKVKLTGNPNQDGEVEEIFRQNVENSLLHLSHLTGLELSKDQQLFKGVLAHL
                     MPLRIRLENNIQLGNPLTAEIKDQYFEAFELTKTAFAAIPELMGYSISDDEWAYLTLH
                     VMAAIERYQGFKKTRVLVVCATGIGSALMLKNRLEKEFSSSLEILDTVSYYEVTEERL
                     KDVDLIISSISLSNLIFMTPVINVSVFLSEKDIEAIRSHLQQTTPVIPDQGESVLMEV
                     GQAKQIAEAVFAPHRIIYLEEDCDREVALKQLVTTLNESIEPDFVNRFIEQVNLRESY
                     SPVVFGDWLAFPHPALPMSYSEQIVVGIYKNAVDWGHGKQVQFVFLLSPSKGRNAFLK
                     YISPCLVDFVQDRVLQERLLHHPNYKELIDIFIPLIQRKG"
     gene            14751..15062
                     /locus_tag="U1396_000794"
     CDS             14751..15062
                     /locus_tag="U1396_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5341998.1"
                     /translation="MKHIMLVCNAGMSTSMLVTKMQKASEETGVEATIWAVPVSEADN
                     EVAQKEIDVLLLGPQVKFLLNDYKAKFEPTIKVDAINMMDYGVMNGAKVLEAALKMME
                     G"
     gene            15064..15378
                     /locus_tag="U1396_000795"
     CDS             15064..15378
                     /locus_tag="U1396_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5341999.1"
                     /translation="MNSPEYLEAIMGLIMYGGEAKGFASQAIQAAKEGRIDEAEQLLQ
                     DAIASLNIAHKSQTQLLAKEASGESVELSLLMVHGQDHLMNALTFIDLAKEFVDLYKQ
                     IG"
     gene            15397..15837
                     /locus_tag="U1396_000796"
     CDS             15397..15837
                     /locus_tag="U1396_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3284 domain-containing protein"
                     /protein_id="HEM5342000.1"
                     /translation="MKISKIGQVPIERLFATIRQSLKDDFQQNTGSILQDQDIIQGLT
                     YTKTFGDKGQHSVKVTVEEFTAPYCYAVCFHSNRGKEHVRYQLEDLGNDQTNIEYSYE
                     MEAGDIFVKGNQFLMEKIFSKSIKRQTNAQLEALIRCSVEPVSV"
     gene            15881..17257
                     /locus_tag="U1396_000797"
                     /pseudo
     CDS             15881..17257
                     /locus_tag="U1396_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938559.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
     gene            17590..18198
                     /locus_tag="U1396_000798"
     CDS             17590..18198
                     /locus_tag="U1396_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5342001.1"
                     /translation="MSYQMIKKQFKLGLFTALIGNLLWLGMVNVSADDTVISDSPTVS
                     ALTKKVEAAKIAAKAAAEKIVAEKAAAAAKAALATNMVSEVAVEYTANTYPAGQCTWG
                     AKEMAPWVGNYWGNGGDWAASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAAN
                     GHIQVKESNYGGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV"
BASE COUNT         5228 a         3434 c         4304 g         5289 t
ORIGIN      
        1 aataaaaata aaaggagaac ctatatgaag aaaatattgt tcagttttgc tctgctattg
       61 tccctaatag ggttaggagc ttgtcgtcca tcgcaaacca cagaaggctc tagtaagcca
      121 agagtggctg tgactacttc cttcctcaat gacatggtct atcagttggc gggtgatgag
      181 gtggaacgtg atttgctgat tccagcagga gaagaccctc atttgtacgt agccaaatct
      241 agtgatttat caaaattaca aaaggctgac cttgttctct atcacggttt gcactttgaa
      301 ggtaaaatgg ttgaagcttt ggagaagacc ggagtagctg tttctaaaaa ctttaatgca
      361 aaagacttga atacgatgga tgaggatgga gaagagattg tcgatccgca cttctggttt
      421 tcaattccct tgtacaagtc agctgtagct gtagcttcag aggaactaca aaaactctta
      481 cctgctaaag ctgagatgat tcagaaaaat gcagaaaaat accaagcgca gctagatgat
      541 ttgcatgcct gggtagaaaa agaattaagt gtgattccaa aagaaagtcg ctatttggta
      601 acaccacatg atgcctttaa ttactttgct gctagttatg acttcactct ttatgctcct
      661 caaggcgtga gcaccgactc agaagtggct aacagtgaca tgattgagac agttaaccta
      721 atcatcgacc ataatatcaa ggctatcttt acagagtcta caaccaatcc agaacgcatg
      781 aagaaattgc aagaggcagt aaaagccaaa ggtggtcagg ttgaagttgt tactggcgaa
      841 ggtaaggagt tgttctcaga ttccttggca ccagaaggcg aggaagggga tacctttatc
      901 gacatgtaca aacataatgt taaactgatg gttaaatatc tgaaatagta cagatcgaac
      961 ggacttgcta ttcaatgaag actagagata ttaccgaaga tagagttgat aggtaccaat
     1021 atgagggaca atcaattgtt tcgagcacaa gcggtatagg gctctttcta ttggaggtgg
     1081 taacgcttgg gggaggatag gcgttagtag caaatcacac cagttattga ggtccttgac
     1141 tagaaatacc gcttgtagac ctcaatgatc ttggttcaca gcgggacttt atatatcagt
     1201 agtctgtgcg tgaataggga tttcaaatga gtagtaaaaa ggactcggtc taggtcgagt
     1261 tctttccgtt tttggaccat ttttaacaga tttataaaca tacgattgaa ggaagcattg
     1321 gtgctctgcg aaaatcaaat tcatgtactg atgtgttgaa ataagcgatg tatagggttt
     1381 gccagcaatt tgttggtacg gtatcttaat cttatcgact ttctcagctt ggtaggttgg
     1441 tctggttttg attttcattg agtatgaatg aggcatatca tttttaaaaa taggaggaaa
     1501 catgtcagca atcattgaat taaaagatgt caatttagca tatacagcca gccagaccat
     1561 ggctttagaa gatgtcaatt tggtgattcc cagagggagt cggacggcta ttgttggacc
     1621 aaatggtgct gggaagtcca gtctattcaa ggtcattttg gggttggaaa aacctgacac
     1681 agggcaggtt cgcttgcttg gtcaggaggc aggtctagag aggttgattg ctcaaaaagt
     1741 agcctatatt ccccaatcca gtcaagtaaa ttggcaattt cctgcaacag tctttgaaat
     1801 tgttctgatg ggacgcttcg ctcatagtaa gggaatgttt cgaagaccga ctaaggctga
     1861 tagacagatt gttgagcagg ctctagaacg gttaaaaatt gcggatttac gccatcgtca
     1921 gattgatcag ctttcaggtg ggcagcgtca gcgggtcttt ctagcgagag ccctggcaca
     1981 ggaagcagaa ttgtatctta tggatgagcc tctagcaggg attgatcagg caacagaaat
     2041 catgatcatg gatatgctca aggagttcca atgtgaaggg aaaacttcca ttgtcattca
     2101 tcatgactta acgacgctgg atgcctactt tgatcacctt gtctggcttc ataagcatgt
     2161 gattgactct ggtccgatgg atgagacttt gacaagcgag aattatcagg cgacctacgg
     2221 cataggaaat gggttgtttc taggaaatgc caaaggaggc agtcatgttt gaggttttca
     2281 aagagtattc tttctggaca gttgctttag ggaccgtcag cctagctgta gcagccagca
     2341 ctatcggaag tatatctgtt cttactaaac agagtttgct tggggatgct cttgggcatg
     2401 cttcttatcc tggagtgatt gtctctttca tgatttttca gtcgcgacat cctctctact
     2461 tgctgttagg agcagtgttg tcaggctacc tttcttatgt acttgtccat tggttgcgtc
     2521 gaaaaggtgg tcacagccta gtcaatgccc tttcattggt gtctgcgtct ttctttggtt
     2581 tgggaatggt cttgaaaaat gctattcagg gaaatgaagc ctttgcaggg tcctcccaag
     2641 ctggattgca aacctatcta tttggacagg cagcctttat tcagctggat gatgtgatac
     2701 tcatcggaat tatttctcta ttggctttgg cattgtttac tttcttttat caagactata
     2761 agctatatct gtttgatcaa acttttgcaa gggttattgg tgttcgtgta aagtacttgc
     2821 agcagttgac gatgtttttg atgatttgcc taattgcagt aggattaaag ttagtcggag
     2881 ctattttgat gagtagtttt ttgattgcac cagctgtctt tggcttgatg ctgggaaaat
     2941 cgtatcataa gagtctgtta ctggcaggaa tcgttgcaat tgggtcggct ttcgtaggga
     3001 cctggattag ctctagtgta tctggtttat cgaccggacc gactattatc gtctgtctga
     3061 caggtctgac cctgtctgca tttgtgtatg ttacctatgt cagaaaggag aatggtcgtg
     3121 tttgaagtat tgctcatttt gatggttatt gctagttctt gtggcttgct cggctcgata
     3181 ctggttgtaa aaaatcaatc gatgttggca gatgcactat cgcattctgt cttgcttggg
     3241 attgttctgg gattttttat tagtcatagt ttggattcgc cattgctaat agttggtgcc
     3301 agtctgtttg ggttattatc ggttcttgcc attgaccgtc tgcatagtcg aaagatagcg
     3361 catgatgccg caacaggtct agttttttct ttcttttttg cggtggcggt tttgcttatt
     3421 tctctttttg ctcgcaatgt tcacttggat gtggatctgg ttttgcaggg ggaagtactt
     3481 tttgctccgc tccatcgtat ggatgttcta gcctggtcac tccctgttag tctggtcaag
     3541 tcgagtttgg cttggttggt tattgttcta ttttttgctt gggcttacca tcgtttacaa
     3601 gtgtacctat ttgatagcaa ccatgctcgt ttgtctggct tacgaacaag gattttagaa
     3661 atggttattt tgattctagt ttccttaact actgttctgg ccttcgaagc gattggctcg
     3721 atgactgtta ttgttttctt ggtggcacca agtatggctg ccctacgttg ggtcaaatcc
     3781 ttttggcaat tgctgctttt agggcaaggt atcgctattc taacggttgt gctaggtttt
     3841 ttagtggcca atcaactgga tttaaccatg tcagggacct gtgctgttgt cagccttctt
     3901 gtggtttgtt cgagtattat tctaaaaaat acttggtcac ggtcatctga taagtgaaat
     3961 tgtcagaatt ttttgttatt atagtcatta agaaagacaa aggagaaaat caatgacacg
     4021 tttacaagat gatttttacg aatacgtcaa tggtgaatgg gcaaaaacag ctgtgattcc
     4081 agacgataag ccaagaacag gtggtttctc agacttggcg gatgagattg aaaagctcat
     4141 gattgacacg acaaacgctt ggttggcggg agaagatgtc ccagaagata gcgttttgca
     4201 aaactttgtg gcttttcaca aacaagtagc cgactatgaa acccgtgacc gtttgggagc
     4261 agaacctgct caggccttga ttgcagagta caaggctctc aactctttcg aagaattcac
     4321 cagcaagttg gcagaatatg agttggcagg caagccaaac ctcatgcctt tcggcgtggc
     4381 acctgacttt atggacgcga ccaccaatgt cctctgggca gattctctag gcattatcct
     4441 cccagatacg acctactatg aggaaggtca tgaaaagggt gcagaattac tcaaaatctg
     4501 gcgtgagagc caagaagccc tcctgccaaa atttggtttc agcgatgagg aaatcaagga
     4561 cctcttggac aagcgtttgg aactagatgc cacgattgcc aagtatgttc tgtcaaatga
     4621 agaaggttct gagtacgcca aactttacca cccgtacgag tgggcagatt ttactgcctt
     4681 ggcaccagag ttgcctttgg atgatttctt cacagcgatt ttaggtcaaa cgccagacaa
     4741 gattatcgtg cctgaggaac gtttctggca ggctgccaag gacatttaca gtgcggataa
     4801 ttgggagctt ttgaaggcga ccttgatttt gaaagcggct ggcgcctata ctgccttcct
     4861 gtcggatgaa attcgcattc tagcaggagc ctacagccgt gctctttctg gtacaccgca
     4921 ggcgcaaaac caagaaaaag cagcctacaa cttggcacaa ggctacttta accaagccct
     4981 cggtctttgg tatgcaggag aaaaattctc accagaagct aaggccgatg tggaagccaa
     5041 agttgccaag atgattgagg tttacaaatc tcgtttggaa acggcagact ggttggctca
     5101 ggaaacgcgt gacaaggcca ttgtcaaact caatgttatc aagccttata tcggctatcc
     5161 agaagccttg ccagagcgtt attataagaa gattgttgac ccaagcaagt ccttggtgga
     5221 aaatgccatc gaactaaaca agattgacat cgcccatggt tggagcaagt ggaacaagcc
     5281 tgtggacatt aaggagtggg gcatgccagc tcacatggtc aacgcctact ataacccaca
     5341 gaagaacttg attgtcttcc cagcggcgat tttgcaggct ccgttttact ccttggagca
     5401 atcttcgtca gccaactacg gcggtatcgg tgccgtcatt gcccacgaga tttcccatgc
     5461 ctttgactca aacggtgctt cctttgatga gcatggtagc ttgaataact ggtggacaga
     5521 ggaagattat gcagcctttg aggcccgtac ccagcaggtt attgatcagt ttgagggtca
     5581 ggattcttac ggtgccaaaa tcaatggtaa gttgaccgtg tcagaaaaca ttgctgacct
     5641 tggtgggatt gcagcggcct tggaagcagc caagtcagaa gatgacttct ccgcagagga
     5701 attcttcact aactttgctc gcatctggcg aatgaaggct cgtcctgagt tcatgcagat
     5761 gttggctagt gtcgatgtcc atgcaccagg tcacctacgc accaacatcc agttgccaaa
     5821 cttcgatgaa ttccatgaaa catttggcgt tcaagaaggc gacggcatgt ggcgtgcaaa
     5881 agaagaccgt gtgattattt ggtaaaaatg cgaaaacagc tagtgaaaac tggctgtttt
     5941 tgtctttccc aattccccca aaacgtgata taatagtaaa gataatttat tgacatggag
     6001 aaatgatatg agcttctaca atcacaagga aatcgagccc aaatggcagg gattttgggc
     6061 aaaaaatcat acttttaaga cgggaacaga tgcggctaag ccaaactttt atgccctaga
     6121 tatgttccct tatccgtctg gtgcgggctt gcacgttggt caccctgagg gctatacggc
     6181 gacggacatt ctcagccgat acaagcgtgc tcagggctac aacgttcttc acccaatggg
     6241 gtgggatgcc tttggtctgc cagctgagca atacgctatg gatacaggca atgacccagc
     6301 tgactttacg gcggaaaata ttgctaactt caagcgtcag attaacgccc ttggcttttc
     6361 ttatgactgg gaccgcgagg tcaatacgac tgaccctaac tactacaagt ggacccagtg
     6421 gattttcacc aagttgtatg aaaaaggcct agcctatgag gcagaagtgc ctgttaactg
     6481 ggtagaggaa ttgggaacag ctatcgccaa cgaagaggtc cttcctgacg gaacgtctga
     6541 acgtggtggc tacccagttg tccgcaagcc aatgcgccaa tggatgttga aaatcactgc
     6601 ctatgcagag cgtttgctca acgacctaga agaagttgat tggccagagt ctatcaagga
     6661 tatgcaacgc aattggatcg gcaagtcaac gggtgccaat gtgactttca agattaagga
     6721 cacagacaag gacttcacag tctttacaac tcgtcctgac accctttttg gtgcgactta
     6781 tgctgttctt gctcctgagc atgacttggt agatagcatt acatcgcctg agcagacaga
     6841 agctgtggca gagtacaaac gccaagcttc tctcaaatca gacctagccc gtacagattt
     6901 ggcaaaagac aagacaggtg tttggactgg tgcctacgcc atcaaccctg tcaacggtaa
     6961 agaaattcca atctggattg cggactatgt actggcaagc tacggaacag gtgctatcat
     7021 ggccgttcct gcccacgatg agcgtgactg ggaatttgcc aaacagtttg gtttggacat
     7081 cattccagtt ctggaaggtg gcaatgtaga agaagctcct tacacagagg acggtgccca
     7141 catcaattct gatttcctag atggtcttaa caaggaagaa gctattgcca aaatggtagc
     7201 ttggttggaa gaaaatggtg ttggtcaaga gaaaatttct taccgcctcc gcgactggct
     7261 cttcagccgc cagcgttact ggggtgagcc aattccaatc atccactggg aagacggcac
     7321 ttccacagcc gtaccagaaa atgagttacc tctggtattg ccaaaaacct cagacatcaa
     7381 gccttcaggt acaggggagt cacctcttgc taacttgaca gactggttgg aagtggtgcg
     7441 ggaagacggc gttaaaggtc gccgtgaaac caacactatg ccacaatggg cgggttctag
     7501 ctggtactac ctccgctata tcgacccgca caatgatgag aagttggcag acgaggatct
     7561 tctcaaagct tggttgccag tggacatcta catcggtggt gccgagcacg cagtccttca
     7621 cttgctttat gctcgcttct ggcacaagtt cctctatgac cttggcgttg tgccgactaa
     7681 agagcctttc caaaaactat ttaaccaggg tatgattttg ggaactagct accgtgacag
     7741 ccgtggtgcc cttgttgcga cagataaagt tgaaaaacgt gatggttctt tcttcaacat
     7801 cgaaactggt gaggagttgg agcaggcacc tgctaagatg tccaagtccc ttaaaaacgt
     7861 ggtcaatcca gacgatgtgg tcgagcagtt cggtgcggat accctccgtg tttacgagat
     7921 gttcatgggc ccacttgatg cgtcaatcgc ctggtcagaa gaaggtctcg agggcagccg
     7981 taagttcctt gaccgtgttt atcgcctctt gacgaccaag gagcttgcgg cggaaaatag
     8041 cggagcgctt gataaagttt acaatgaaac tgtgaagacg gtgacagagc atattgaaga
     8101 cctgaaattc aacacggcta tcgcccagct catgattttt gtcaacgcag ccaacaaaga
     8161 agacaagctc tatgtcgaat acgccaaagg ctttgtccaa ttgattgccc catttgcgcc
     8221 acacttggca gaagaactct ggcaaggtct gacaaataca ggtcagtcaa tcagctatgt
     8281 cgcatggcca acatatgacg aaagcaagct ggtagaaagc gaagtggaaa tcgttgtcca
     8341 aatcaagggc aaggtaaaag cccgcttgac cgtagccaaa gacctagcac cagcagagct
     8401 tgaaaaagtt gcccttgcgg acgaaaaagt ccaagctgaa attgctgggc agacagtggt
     8461 gaaggtgatt acggttccaa acaaacttgt caatatcgtt accaagtaac gattgcctcg
     8521 tttgtttgtc tatttccaac ctccaacagt ctatccgcag actgttggag ccaactaaac
     8581 ttgttaatat tgttgtgaaa taaatgtaaa taataagaag acgacttccg tattggaggt
     8641 cgtttttgta ttttctagaa tgatcatgtt gtcttaattt ccgttgtgat acggaaaaag
     8701 agggtctgtg tatccgttta caatagatgt tcactgaaat ataataagaa tataaaagaa
     8761 gatgagggag ggaaagcgtg ttgaaaactc ttaaattagt gacaattggt ggaggctcaa
     8821 gttacactcc agaattggtt gaaggtatga ttcttcgtgc acatcaatta cccattcgag
     8881 aatggtggtt tgttgatgtt gaacaaggcg caaaaaaaca ggagatcgta gttgagttag
     8941 cacggcgaat ggtcgcgaaa gcaggcctgg actggaagat agagtcgacc ttagacagaa
     9001 gagaagcatt gatagaggct gattttgtaa cgtctcagtt ccgagttggc caactacctg
     9061 caagatactt agatgagacc attcccttga gttatgggat gctggggcaa gagaccaatg
     9121 gggctggagg aatctttaaa gcatttagga ccattgaagc atataaaggg attatcaagg
     9181 atatgaagga cttgtgtccg aatgcttggt tgattaattt tacgaatcct gctggtatcg
     9241 taacggaagc cattgctaat gaactccact ggaagaaagt tattggtttg tgtaatatcc
     9301 ctattggtca aaagaaactt gctgctcaga ttttaggcca atcagaagga gacctaagta
     9361 cgcgccatat tgggttaaat cattttcact ttcatgaagt ttgggataag tatggggaaa
     9421 atcgtacgca agtaatctta gaaacattgt atggggattt gagagaggag acgccagaag
     9481 cagtcaaaaa tattaccaat ctagagtttc ctattcaatt gcttcggacg attggaatgt
     9541 tgccatgtga ttaccatcgt tattattttt tggaacaaga aatgttagag gatgctttgg
     9601 agcagtatcg tcagggaaat gtacgagcca aggttgttca agaagtagag acagaattgt
     9661 ttgagcttta caaagaccca caattgaaag ataaaccaaa acaactggaa ctacgtgggg
     9721 gtgcctacta tagtgatgtt gcctgtcaaa tcatttgtgc tatccataat gatagtagag
     9781 aagaattgac tgtatctact gtaaatagag gagttattcc ctatctacct gaaaattgtg
     9841 tggtagaagt cacctcgatt atctctgcgc aaggagcaac accactagct tgtccaccaa
     9901 ctccgccgat tgtaaccggc tatttacaac tgatgaagca aatggagctt gtcactgttc
     9961 aggcagcaat gacaggtgat tattcactgg ctttacaagc ttttacactc aacccgctta
    10021 tttcaaacgg accacaagct gaagtgctat tacaagatat gttacttgca catgagaatt
    10081 atttgccaca attcgcacca gctatacagc acataaaaga gagaaggaac aatcaatgac
    10141 taaagacaag gtattttatc aatttccaac aaattttttg tggggttctt ctacatcagg
    10201 acctcaaagt gagggaattg agccaggtga tggaaaagga cagaacaact gggactattg
    10261 gtatagtatt gagcctgaac gatttcataa caaaattggc cctagtcaaa catcaacatt
    10321 ttacaaacat tatgaaaaag atattgattt attagttgaa actgggcaca ctgtatttcg
    10381 gacctccatt cagtggtcac gttttatacc aacaggtact ggagaaatta atcaagaggc
    10441 agtgtccttc tatcgttcgg ttttttcttt ggtaagagca aagggaattc aactctttgt
    10501 caatctttat cactttgatc ttccctattg tttacaagaa aaaggtggtt gggaaaataa
    10561 ggaaattgtt cgagcctatg aagcatatgc acgtacatgt tttgaattgt ttgatgactt
    10621 agtcgatcgt tggattacct ttaatgagcc gattgttcca gtagagtgtg gttatctagg
    10681 aaattatcat tatccatgta aggttgatgc aaaagcggca gttgcggtgg cttatcatac
    10741 acagttggca agttctttag ctgtaaaggc atgccatgag gtaaatcctc acaaaaaaat
    10801 cgctattgtc ttgaatctaa ctcctgccta ccctcgtagt gagcaagcag aggatataaa
    10861 agcagctcga attgcagaat tgtttcaaac aaagagtttt ctagatccgt ctgtgttagg
    10921 agaatatccc gatgaattag tcgagctgat tgatgcatat gggctaatgc cagaggtcag
    10981 cgatgaggaa ttagccatta ttaaggaaaa tcgtgtggac ttcctagggg tgaattatta
    11041 tcaacccctt cgggtacaag ctccaaccaa tagttggaaa gagggagagc ctcttactcc
    11101 ggaacatttc tttgccccat atgatatgcc aggtaaaaaa atgaatccgc atagaggttg
    11161 ggagatttat gaaaaaggga tatatgatat tgcgataaat attaaggaaa attaccataa
    11221 tatcgaatgg tttgtaacag aaaatggtat gggagttgaa ggagagggcg catttaaaga
    11281 caatggactc attcaagatg attaccggat tgaatttatc gaagatcatt taattgaatt
    11341 acatcgagct atccaagaag gggcgaattg taaaggatac atgttatgga cctttattga
    11401 ttgctggtct tggttaaatg catacaagaa tcgctatgga ttagttgaac tggatctaga
    11461 cacgcaagaa agaattgtta agaaatcagg caagtggttc aagaaattga gcgatgctaa
    11521 tggttttcat cgctaggagg gaatgatggt agaactgggc ttttcaattt atcctgaaaa
    11581 ctattcgcta gaagagagtc aagcttacat taaacttctg caccaatacg gagcaaggcg
    11641 cttatttatg agtttgttgc aacttgaaaa tggagaccga acagtttttg aattgtatca
    11701 aaaactagtt gactatgcaa atcaattagg gatgactgtc attgcagata tcagtcccca
    11761 ttttatcgca gcgcaaggtt gggatggggc attgatggag cgtgcagctg aactggggtt
    11821 ggctgggatt cgtcttgatg aagctcttcc tttggaagaa atcattgaga tgacacataa
    11881 tccacacaac ataaaagttg aattgaattt gagtacagat aggaccttgc tgtccaatct
    11941 tttggctagt gttgcaaaca gggataatat tattgcctgc cataattttt atcctcatgc
    12001 ttatacaggt ttatcccaag agcacttctt agagatgtca tctttttatt atcaatccgg
    12061 tataagaact gcggcatttg tcagtgcaca aacagcttct gaggggccgt ggccattatc
    12121 tgaaggtcta ccaactttag aagatcatcg attctggctt cttcccttgc aaattgcttg
    12181 gatgaaggca acgggtttta ttgattctat tttgatttca aaccaattta tctcggagga
    12241 ggaactacaa tccattcaaa cagttttaaa tgaagataca atcagcctta tggttgatat
    12301 tgaggagggt ttgactcccg ttgaaagaga gattgtagcg tttgatcatg tttatagagg
    12361 tgatatttct gcttatgttc tgcgttcaac catgccccgt gtggtgtata aggacgcatc
    12421 tgtaccggct cggtcagacc aagcaattcc tgtgggacga ggggatatct taattgataa
    12481 tgatttatat ggtcgctaca agggtgaatt gcaaattgca ctcaaagaat ttaccatcag
    12541 tccaaaggta aataaggtcg gacgaatcag cccagactat cttcccttgt tacgctttat
    12601 taaaccgtgg caagagttta aactggtcat agcttccgag cactttcatt aatgatgcgg
    12661 aaaaagtagg cacctctaga aatcgctttc atgttataat gtacatataa gaaatcaaag
    12721 actgttggcg gaaaggaggg agcatgttat ctaaaaaaga agtacgcttg ttagaggctt
    12781 tacttgcaaa acaggagaca ttcgtaccaa gcatcgagct agccaaggta ttatcagtga
    12841 gtgatcgaac ggtaagaacg tatattcatc aactgacatc ttctttagaa aatagcggcg
    12901 ctcatatcct ttcaaaacaa ggtagtggtt attgtttaca gattgaacgg ccagttgagt
    12961 ttgaaatgtt ttggcaggag caattgctcc taaaaaagcg gttaactgat ttaactcaac
    13021 tagaagaagc gggtgatcgg caacggtata ttctgaacaa actcttgttc gaggatccag
    13081 ttcagtctcc tgaatgttta caaagagagt tattcattgg aaagactacg cttcattcca
    13141 ttttggcgga tattcgaaaa ctatttatcc cctatcaatt agaactcctt gtgacacgta
    13201 aaggaattga actaaagggg gatgaacctg ctatccgtca ctttattatg gattactttt
    13261 ttgatgaggg aaatgttcaa tctgtttatg gggttgtcga aaccaatcta ttgccagata
    13321 tacggttcac agacttaatg ttaatcgtct tagacgagtg tcgggatgct aaattacgtt
    13381 tatcagattt tgtcatgcag aatctagtgc tccatatcgc tcttctttta caacggttga
    13441 aaattggatc tggtctagac cggttcccaa taccggagcg tattcagtcg tctcaagagt
    13501 atcttgtggc acaacggatt attgaacgaa tcgaagaaat gtttcaagtg acgataccgt
    13561 cagaggaagc aaattacatt gcgttgcacc ttaaggtaaa actaacgggg aatccaaatc
    13621 aagatggtga ggtggaagag atatttagac agaatgtgga gaatagtctt ttacatttgt
    13681 cacatttaac aggcctagag ttgtcaaagg atcagcagct attcaaagga gttctggccc
    13741 atttgatgcc gttacgtatt cgtttggaga ataatattca actgggaaat cccctaactg
    13801 ctgaaattaa agaccaatat tttgaggctt tcgaattaac aaaaacggca tttgcagcga
    13861 taccagaact aatggggtat tcgatttcgg atgatgagtg ggcttacctt accttgcatg
    13921 tgatggcggc aattgaacgt tatcagggat ttaagaagac cagagtattg gtagtctgtg
    13981 ctaccggaat tggaagtgca ttgatgttaa agaatcgctt ggagaaagaa ttttcatcca
    14041 gcttagaaat tcttgatacg gttagttatt atgaagttac agaggaacga ctaaaagatg
    14101 ttgatttgat tatttcatcc attagcttgt cgaatctaat ttttatgaca ccggttatca
    14161 atgtcagcgt cttcctatca gagaaggaca ttgaggctat tcgatctcat ttacagcaaa
    14221 cgaccccagt tattcctgac caaggggaaa gtgtgctaat ggaagtaggc caggctaagc
    14281 aaattgcaga agcagtattt gctccacata gaataatcta tcttgaggag gattgtgatc
    14341 gagaagtagc cttgaagcaa ctagtaacta ctttgaacga atccattgag cctgattttg
    14401 ttaatcgctt tatagaacaa gtgaatttac gagaatctta cagtccggtt gtctttgggg
    14461 attggttagc cttccctcat ccagccttgc cgatgagtta ttcagaacaa attgttgtag
    14521 ggatatataa gaatgctgtg gattggggcc atggaaagca agttcaattc gtcttcctat
    14581 tgtcaccgtc aaagggtcga aatgcatttc tgaagtatat ctcaccttgt ctggttgatt
    14641 ttgttcaaga tagagttctc caagaacgtt tgttacatca tccaaattat aaagaattaa
    14701 ttgatatttt tattcccctc attcaaagaa aggggtagga ggagtttttt atgaaacaca
    14761 ttatgttagt ttgtaacgca ggcatgtcta caagtatgct tgtaactaag atgcaaaaag
    14821 catcagaaga aacaggggtt gaagcaacta tttgggctgt tccagtatct gaagccgata
    14881 atgaagttgc tcaaaaagag attgatgtat tactcttagg tccacaagta aaattcctat
    14941 tgaacgacta taaggcaaaa tttgagccaa ctattaaggt agatgctatc aatatgatgg
    15001 attacggagt gatgaacgga gctaaggtgc tagaggctgc cctaaaaatg atggaggggt
    15061 agtatgaatt ctccagagta tcttgaagcg attatggggt taatcatgta cggtggtgaa
    15121 gcaaagggct tcgctagcca ggcgattcaa gcagccaaag aaggtcgtat tgacgaagcg
    15181 gaacagctgc tccaagacgc aatagcttca ttgaatattg cccataaatc gcaaacacaa
    15241 ttattagcaa aagaagcaag tggagagtct gttgaattat ctttgttaat ggtacatgga
    15301 caagatcact tgatgaatgc tttgacattt attgatttag cgaaagagtt cgtagatctt
    15361 tataaacaga ttggataatt ataggagaac tgggttatga agatatcaaa aataggtcaa
    15421 gttccaattg agcgactttt cgctactatt cgccaatcct taaaagatga ttttcagcaa
    15481 aatacgggtt ccatcttgca agatcaagac attatccagg gacttactta tactaaaaca
    15541 tttggtgata agggacaaca tagtgtcaag gtaactgtag aagagtttac agctccttat
    15601 tgctatgcag tttgtttcca ttctaatcga ggaaaagagc atgttcgcta tcagttagag
    15661 gatttaggga atgatcaaac caatatagaa tattcttatg agatggaggc tggtgatatt
    15721 tttgtaaaag gcaatcaatt tctcatggaa aaaatctttt caaaaagtat aaaacgtcag
    15781 acaaatgccc agttagaggc gctgattcgt tgctcagttg agccggtatc agtttaacat
    15841 ttaggacata taaaacaaaa aatagaaaag gagacagaat atgtcaaata tttctgagaa
    15901 attcatggaa atatctggga aaattggttc gcaacggcat ttgattgcga ttcgtgattc
    15961 ctttatttct atgatgccca ttacgatggc aggtacagta gccgttctat tgaacgtctt
    16021 tctgagagac atcccaaata atatgggatg gactggtttt gctgatgcca tgcaaccagt
    16081 gatagatata aatggctacg tttattttgg aaccatcggg attatggcac ttgtatttgc
    16141 ctttaccttt ggttacaatt tatcactcat gtataaggtg aatccttgag caggtggttt
    16201 gatttccttc gcatcattca tctctactat tcctcaaagt gtaacgattt ccactacttt
    16261 agacggagtt gataagtcag ttgtttctgc tttggaaggt ttgggattat ccattgtgac
    16321 gacagatgga gtttcagcct tggaaacaag ccagtgggga gctatcgcat tgaaatatgg
    16381 cggtgcaaca ggtttgttta cagcattgtt tattggattt ctcgctacat gggtctatgc
    16441 aagtcttgta aaacggaatg tcattattaa attgccagat tctgttccac cggcagttaa
    16501 taaggccttt gctgctatta tcccaggtac tgctgcaatt tatgcgtcat ccattgtggc
    16561 atatcttgca tttactctaa caggacaatc tttgggagat ttagtatcaa cttatattca
    16621 actgccatta cttggtctgt cacaaggtct tgggtcagtc attcttttaa ctttccttgt
    16681 acaacttttt tggttcttcg gcctgcatgg tcacaatgtc ttggcgccaa ttatggacgg
    16741 agtctatatg gttgcactaa atgaaaatgc ggctgcttat actgcaactc atagtactgc
    16801 gaatttaccg tggctttgga ctcgtggttc ctttgatgct tatgctcaaa tgggtggttc
    16861 aggcgtcact ctagctttga ttattgctat tttcattttc tcaaaacgag aagaatacaa
    16921 aatggtagct aaattatctg ctccaatggg tgtattcaat attaacgaac cagttacctt
    16981 tggtatacca atggtattga atccactgtt tgctattcca tggctaattg ttccaccgat
    17041 ttgtgcaact atcgcatact tagcgacagc ggcaggtata attccgccag tctttgctcc
    17101 tgttccatgg attacccctc caggactcta cgcttatcta gcaacaggtg gtaacattat
    17161 ggctgcgttg gtttcactat tcaacctctt tgttgccttc ctgatttgga caccatttgt
    17221 tattgcagcc aataaggtta aggctggtga ggaataatgt tttccaagaa caaatctcct
    17281 ttcttattgg cgctaggatt tttccttatc gcgattagtc cgctttatgg gaataaatat
    17341 ctaaacatta tatctggttt ggtttttatt ctaatcagtg tactcaggag taggagaaaa
    17401 taattacact aacactaaat agaaaacgac ttccgtattg gaggtcgttt ttttgacaaa
    17461 aagtccgaac actgtgattg ttaagagatt gcaagttatc tgtaatattt gttacatttc
    17521 tttaagctct ctgcaaggat tatcccttag gatagatagg gcagaaaaaa cacgaaggaa
    17581 tcaaatatta tgagttatca aatgataaaa aaacaattca aattgggact gtttacagcc
    17641 ctcataggaa atcttttatg gttgggaatg gtgaatgtca gtgcagatga cacagttata
    17701 agcgatagtc cgacagtatc agcgttaaca aaaaaggttg aagctgcaaa aatagcagcc
    17761 aaagctgctg cagaaaaaat tgtggctgag aaagctgctg ccgctgcaaa ggctgctttg
    17821 gctaccaata tggtgtcaga ggttgctgtg gaatatacgg ctaataccta tccagctggt
    17881 cagtgtactt ggggtgccaa agaaatggct ccttgggttg gaaactattg gggtaatggt
    17941 ggagattggg cagctagtgc ggcagcgctt ggatatgaag tgggaactac tccaaaagtt
    18001 ggcgctattg ctgtatggac agatggaggc tacggtcatg ttgcctatgt aacagatgtg
    18061 gcagctaacg gtcacattca agttaaggaa tcaaactatg gtggagtata ctacccaagt
    18121 aatgtccgag gtttctttga tccaacaacg actagcgaag gaacagtcag ctatatttac
    18181 ccaccagctg gagtataatt aatatgagat ataaagaccg agtaggtctt tttttatgct
    18241 ccgatacttg attaa
//
LOCUS       DASGBY010000031        17635 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.031, whole genome shotgun sequence.
ACCESSION   DASGBY010000031 DASGBY010000000
VERSION     DASGBY010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17635
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.031"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(21..1352)
                     /locus_tag="U1396_000799"
     CDS             complement(21..1352)
                     /locus_tag="U1396_000799"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015511317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEM5342002.1"
                     /translation="MTKTYHFIGIKGSGMSALALMLHQMGHKVQGSDVEKYYFTQRGL
                     EQAGIQILPFDEKNITADVELIAGNAFRPDNNVEIAYVDAQGYTYKRYHEFIGEFMKG
                     FTSLGVAGAHGKTSTTGLLAHVMRNITDTSFLIGDGTGRGSANAQYFVFESDEYERHF
                     APYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVKKALLVFGEDEQLRRITANA
                     PIYYYGFEENNDFVAYDLKPSTSGSQFKVRHGEEELGEFQIPTFGKHNVMNATAVIAN
                     LYIAGFDLQLVAEHLKTFGGVKRRFTEKIVNDTVIIDDFAHHPTEIIATIDAARQKYP
                     SKELVAIFQPHTFTRTIALLDEFADALNGADAVYLAQIYGSARETDNGQVKVEDLAAK
                     INKKGGLVTVENTSPLLDHDNAVYVFMGAGDIQSYEYSFERLLSNLTNNVQ"
     gene            complement(1354..2016)
                     /locus_tag="U1396_000800"
     CDS             complement(1354..2016)
                     /locus_tag="U1396_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342003.1"
                     /translation="MIRHEKRFPLVADDEVLVGENPIMSLYDESDLISNIRGLYQEKE
                     FSWSTESQRVASAKPVAQTEDELLPPLFEAKPSHYSRKERLQQLTKTKPSPVKTQGQL
                     AREQAREDLKKKRSATYLRDEKPAPAKVVVKPPVVSTTESKAGRLTRLADNLRQTDYI
                     LADMPAVYSLKKEDREQEQVIKKNSYDFLRKSQVYNYPERRQQRDRQVAQELNLTHIE
                     EE"
     gene            complement(2095..5187)
                     /locus_tag="U1396_000801"
     CDS             complement(2095..5187)
                     /locus_tag="U1396_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5342004.1"
                     /translation="MGRMMPGRIRQEGIDLYEAGKLTVLHSENGKMVLDIAGERFTYG
                     DADSDLQCSCQLFQSKGYCQHLAATEYFLKNDASGKDMKQSLKEDSEQHKETVRRTYF
                     GGLFLDEILRPEPELGLKYQLSVEGSLLPYDRQIDWTLKITRLPDTRSYIVRDIGAFL
                     RIVKANGHYQIGKNYYEQVTYENFDEPSQALLDFLWALVPEKVGIDSDILTHFGRHFR
                     LPQAYFEEGLELLNQLEHFNFSYQQQSYSSLKVLPLTGEEGLYHFEVTVHTQMIEMVI
                     HEKTVRPLFHGRYLLVNGTVYSVNRHQEHLIYQISELVPTESGLRKVQVDFPDQNRLA
                     LSLLDLQTIGTVKAPKRFIIHDFKPEFHIQMEANESLSLQLVLDFDGRKVRSEEDLAL
                     LPFASHFQHLERVYQAIRLAGFRGTYHAQRAALSQQELYPFFQQQLPILQKMGQVHLA
                     ERLQALYIEAKPQLEIVRNGSLLDISFDLSGIEQSEIDQAITALLNQEDHYTSPSGKV
                     FVFDEETKKISQTLIYLRARHGKEGQVQVHALAGYQLAQSLSQFNQVSFSKEFEEMAS
                     YLAQPDLFPLPAVEVTTSLRDYQQTGLKWLTMLDTYGFGGILADDMGLGKTLQTIAFL
                     SSRMTKDSKVLILAPSSLIYNWLDECKRFAPSLDVAVVHGNKEQREEIIANGHQVLVT
                     SYPSFRQDVALYKQERFDYLILDEAQVMKNAQSKIAQLLREFEVGNCFALSGTPIENH
                     LTELWSIFQIVLPGLLPGKQDFGKLAAKDIARTIQPFVLRRHKEDVLQELPDLIEVNV
                     LNELTDEQKAIYLAQLQQMRTQIAGADDAQINRSKIEILSGITRLRQICDTPSLFMEE
                     FSGESGKLNSLKELLLQLKEGEHRVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPA
                     NQRQEMTQAFNAGSRDAFLISLKAGGVGLNLTGADTVILVDLWWNPAVEAQAISRAHR
                     MGQTEKVECYRLITRGTIEEKIQELQENKKNLVKTVLDGNESRANLTVEDIREILGIE
                     "
     gene            complement(5327..5635)
                     /locus_tag="U1396_000802"
     CDS             complement(5327..5635)
                     /locus_tag="U1396_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342005.1"
                     /translation="MEFFGELLVEFLTGLADFDEKKHPPFGIRYWLGWLGVLIHVLLL
                     ALLTCVTVFFFKFFLVGKGLINVVVAVVFLLFALFWLWKSGKTILKMWQATIYYLAIH
                     "
     gene            complement(5637..5975)
                     /locus_tag="U1396_000803"
     CDS             complement(5637..5975)
                     /locus_tag="U1396_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5342006.1"
                     /translation="MVAVPIWRSFLILLSFSSFFLVFYEDSQYKPFGFRYWLGLVACI
                     WLNFVTLASYFIAFTGGSIMVYNQYKQPLVVIFLFCLFVASMLTLLSFKAIKMMIRRT
                     KYYRQVRKVG"
     gene            complement(6043..7353)
                     /gene="der"
                     /locus_tag="U1396_000804"
     CDS             complement(6043..7353)
                     /gene="der"
                     /locus_tag="U1396_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEM5342007.1"
                     /translation="MALPTIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYA
                     TGEWLNRKFSLIDTGGIDDVDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEY
                     VSRILYKTNKPVILVVNKVDNPEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAII
                     ENLPVQEAEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFT
                     DPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDK
                     RIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEDDIRDQFQYLSYAPIIFVSALTKQ
                     RLHKLPEMIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKP
                     PTFVVFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK"
     gene            complement(7372..8085)
                     /locus_tag="U1396_000805"
     CDS             complement(7372..8085)
                     /locus_tag="U1396_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM5342008.1"
                     /translation="MNETIDLMLNHTSVRRFTEEPIEAEHLQAIISAGRAASSWKNFQ
                     SYSIIVVQLEEKKQALYDLVPQPAILQAQAILVFVGDHNRASKAAQLHGSDFDAKGTE
                     NLLISSVDASLAGQNALLAAESLGYGGVFIGMIRHKAMAIAELFNLPDYTYPIFCIAL
                     GRPAQNHPVKPRLASETIVFQEEYVEQGVEVIQAYDQVQTAYAGARQTETWSERMVAQ
                     FGQAEQPETKSILEKNKLL"
     gene            complement(8082..8981)
                     /gene="dnaI"
                     /locus_tag="U1396_000806"
     CDS             complement(8082..8981)
                     /gene="dnaI"
                     /locus_tag="U1396_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HEM5342009.1"
                     /translation="MKSVQDRLSQTTNPSPKSYQQLYQEIVSDPEVAAFIKKEGLTQQ
                     EITLSISKFLEYISQRDLFVKQDEAYIAKGYQPVLVMNEGYADVSYLETEELVEYRRL
                     EAIKNRIQLINMPASLKNVTVADIDKSDENRVEVMLAIADFVKRFEEKPKGLYIYGNF
                     GIGKSYLMAYLANLLSKTHLQSTTMLHYPTFVVDIKNAIKDGSVKERIDEIKMAQVLV
                     LDDIGAEQHSPWVRDDVLQVILQYRMQENLPTFFTSNFSFDDLERHFASGKSGDETWQ
                     AKRVMERIRYLARDLHLKGNNRR"
     gene            complement(8981..10132)
                     /locus_tag="U1396_000807"
     CDS             complement(8981..10132)
                     /locus_tag="U1396_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation/membrane attachment
                     protein"
                     /protein_id="HEM5342010.1"
                     /translation="MKPNDLFAYIKISPFTPDIVSLSQCYQPIIGFDALALYYYFYSF
                     ADQGQGRYKWTVILNHMDFGMNRLEKALDVLTAMGLLELYRADELTGLALQAPLTVKS
                     FLAKPLYKNLLARKIGESSMENLLVHQPNQEQNISKTFSQVFTMDGQAPVVFEPKHDF
                     DWSAFKALMAKDKLLFQDEAEDIIALSYIAEQAGWTWLETYRQAKATAIGQTISTKRL
                     QQSRQSLPTENANLTAQEQAIVREAKSKSSLTFLSFIKEQRKAAVTGTERKCLTDLAN
                     LGLLDEVINVLVLYTFNKVDSANLNEKYAMKLGNDFSYKGIVSAEAAVLYLRELKTGQ
                     VVTKSSQPQKTNVPEWSKEEVQQGQTQEGQAKLAALYRELEEMENKGGS"
     gene            complement(10119..10610)
                     /gene="nrdR"
                     /locus_tag="U1396_000808"
     CDS             complement(10119..10610)
                     /gene="nrdR"
                     /locus_tag="U1396_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HEM5342011.1"
                     /translation="MRCPKCQSLKSSVIDSRQAEDGNIIRRRRSCDQCGQRFTTYERI
                     EEKTLVVVKKDGTREQFSREKIFNGIIRSAQKRPVSTDDIDEVVNRIEQKVRAQGDSE
                     IESDVIGNLVMEELVELDEITYVRFASVYRSFKDVGELENLLKQMISKGSKVKPGKKD
                     ETK"
     gene            complement(10682..11812)
                     /locus_tag="U1396_000809"
     CDS             complement(10682..11812)
                     /locus_tag="U1396_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM5342012.1"
                     /translation="MNTSFKEKVILILLSGATLLAVLNWSSIYGAIQQLLGSMNSLFI
                     GAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVVIVLPTLVT
                     TVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLISSLVTPI
                     LSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAVRVVNYI
                     GEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLSFVPYIGPFS
                     ACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG
                     GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQGELLAESE"
     gene            complement(11902..12591)
                     /locus_tag="U1396_000810"
     CDS             complement(11902..12591)
                     /locus_tag="U1396_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEM5342013.1"
                     /translation="MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHE
                     TDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVVVEPTEVSQYGEEVLSYAVSYVV
                     KPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
                     REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIK
                     TVRGVGYAMRD"
     gene            complement(12673..14100)
                     /gene="gndA"
                     /locus_tag="U1396_000811"
     CDS             complement(12673..14100)
                     /gene="gndA"
                     /locus_tag="U1396_000811"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HEM5342014.1"
                     /translation="MTKANFGVVGMAVMGRNLALNVESRGYSVAIYNRSADKTEDVVA
                     SNPGKNLVPSYDVESFVASIEKPRRIMLMVQAGPGTDATIQALLPHLDEGDILIDGGN
                     TFYEDTIRRSKELANSGINFIGTGVSGGEKGALEGPSIMPGGQKEAYELVADVLEEIS
                     AKAPEDGAPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYDLMQHLLGLSVDEMAD
                     IFTEWNKGELDSYLIEITADILKRKDDQGQDGPIVDYILDAAGNKGTGKWTSQSSLDL
                     GVPLSLITESVFARYISTYKDERVAASKVLPKPAPFAYEGDKAELVEKIRQALYFSKI
                     MSYAQGFAQLRVASKENNWNLPFGEIAKIWRAGCIIRARFLQKITDAYGRDEDLANLL
                     LDEYFLDVTAKYQQAVRDVVALAVQAGVPVPTFSAAITYFDSYRAENLPANLIQAQRD
                     YFGAHTYNRKDKEGIFHYDWYSESK"
     gene            complement(14197..14736)
                     /locus_tag="U1396_000812"
     CDS             complement(14197..14736)
                     /locus_tag="U1396_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEM5342015.1"
                     /translation="MFHIYDIQKNLDGISFDKTLDLQEELQARNGEVLGLSPVEVTGN
                     IRFESGFFFLDYQMTYDITLASSRSLQPVVLHEVQNVNELFVANEAVLKEQDLIDEDM
                     VLVVEDDHIVLDESVADNILLAIPIKVLTPEEEAGQELPSGQAWALMTEEDFQQKAQE
                     KKEANSPFAQLQGLFGDED"
     gene            complement(14746..15663)
                     /gene="trxB"
                     /locus_tag="U1396_000813"
     CDS             complement(14746..15663)
                     /gene="trxB"
                     /locus_tag="U1396_000813"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEM5342016.1"
                     /translation="MYDTVVIGAGPAGMTAALYAGRSNLKVALLERGIYGGQMNNTAE
                     IENYPGYDHISGPALAEKMFEPLEKFGVDHIFGTLVRIEEEGQIKKVITEDGVLETKT
                     VVLAMGAKHRLLGIPGEDTYNSRGVSYCAVCDGAFFRGQKLLVVGGGDSAVEEALFLT
                     QFAESVTIVHRRDQLRAQKVIQDRAFANEKINFIWDSVVEEIKGDDLRVQSVVIKNVK
                     TEEVSELDFGGVFIYVGLDPMTDTVADLGITDEAGWVITNEKMETTQSGIYAIGDIRQ
                     NQLRQIATAVGNGAVAGQEVYNYITELAE"
     gene            complement(15677..15901)
                     /locus_tag="U1396_000814"
     CDS             complement(15677..15901)
                     /locus_tag="U1396_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4059 family protein"
                     /protein_id="HEM5342017.1"
                     /translation="MLQNILSFYLQGLLIASLLIITSSLVWFIWRATKGVDKTLQERQ
                     DFLFDLLMINVMTIPIAAFGVVGILLMFKA"
     gene            complement(15919..17262)
                     /locus_tag="U1396_000815"
     CDS             complement(15919..17262)
                     /locus_tag="U1396_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007517532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5342018.1"
                     /translation="MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGE
                     SKTGSGKTHTFLIPIFQKLSEELDQVQAVITAPSRELATQIYQAARQLASHSDIEVRV
                     TNYVGGTDKNRQIDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLD
                     MGFLETVDKIAGSLPKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIE
                     NWLISTKGHDRNAQILEVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDI
                     PPRERKRMMNQVKNLDYQYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTG
                     RNGLSGIAITLYQPSDDADIRELEKLNIKFLPKEMKNGEFVDTYDRDRRANREKSREK
                     LDLEMIGLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKRQTF"
     gene            complement(17342..17605)
                     /locus_tag="U1396_000816"
     CDS             complement(17342..17605)
                     /locus_tag="U1396_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIB"
                     /protein_id="HEM5342019.1"
                     /translation="MIGVKITKKTVEKTIANAVPILGGLISGGLTYFTFQPMGGMLAD
                     TFVKKINGDFDGELELTEAFKASLEEEKELGIIEAEFTEASES"
BASE COUNT         5028 a         4116 c         3360 g         5131 t
ORIGIN      
        1 ataggcctcc gtctttcttt ttattggacg ttatttgtaa gatttgacaa gagtctttcg
       61 aaggaatatt cataggactg aatatcacca gctcccataa atacatatac tgcattgtca
      121 tggtctaaaa gtggtgaagt gttttcaact gtaacaagtc cacctttttt gttgatttta
      181 gccgccaaat cttctacctt aacctgacca ttgtctgttt cacgcgctga tccataaatt
      241 tgagcaaggt aaactgcatc tgctccattc aaagcatctg caaactcatc gagaagcgca
      301 atggtacgag tgaatgtatg tggttggaag atggctacca actccttgct aggatacttc
      361 tgacgtgccg catcaatggt tgcaatgatt tccgttggat ggtgagcaaa gtcatcaatg
      421 ataacagtat cattgacaat tttctccgta aagcgacgtt tgacacctcc aaatgtcttc
      481 aagtgttctg caaccagttg caaatcaaat ccagcaatat agagattggc aataacagct
      541 gttgcattca tcacattatg cttaccaaag gttggaatct ggaattctcc cagttcttct
      601 tcaccatggc gaactttgaa ttgtgaacca cttgtagaag gcttcaagtc ataggcaaca
      661 aaatcgttgt tttcctcaaa accatagtaa taaattggag catttgccgt gatacgacga
      721 agttgctcat cttcaccaaa aacgaggaga gcttttttta cttgcttcgc ataatcattg
      781 aaagcattga aaacatcctc tagactagtg aaataatctg gatggtcaaa atcaatattg
      841 gtaatgatgc tgtattcagg atggtatggg gcaaagtgac gttcgtattc atcggattcg
      901 aacacaaaat actgagcatt tgccgaaccg cgaccagtac catcaccaat caagaaggaa
      961 gtatctgtga tattgcgcat aacatgtgcc aataatcccg ttgtagaggt cttaccatgg
     1021 gcaccagcaa caccgaggct cgtaaaacct ttcataaatt cacctataaa ttcatggtaa
     1081 cgtttgtagg tatagccctg ggcatcaaca taagcgattt ccacattgtt atctggacga
     1141 aaagcattac cagcaatcaa ttcaacatct gctgtaatat ttttctcatc aaacggtaaa
     1201 atctgaatcc cagcttgttc aagcccgcgt tgtgtaaagt agtatttctc tacatcacta
     1261 ccttgaacct tgtgccccat ttgatgcaac ataagagcaa gtgcgctcat acctgatccc
     1321 ttaattccga taaaatgata ggtttttgtc atgttattcc tcttctatat gtgtcaaatt
     1381 caattcttgt gccacttgtc gatctcgttg ttgtctgcgc tcaggataat tgtaaacctg
     1441 actttttctt aaaaagtcat acgaattttt ctttataacc tgctcctgtt ctctatcttc
     1501 tttcttcaaa gaatagacag ctggcatatc agcgagaata tagtctgtct gacgtaagtt
     1561 gtccgccaaa cgtgtcaacc gacctgcctt agattcagtt gttgaaacga caggaggttt
     1621 caccacaact ttagctggtg ctggtttttc atctcttaag taggttgccg atcgtttttt
     1681 cttcaagtct tctctagcct gttcgcgagc caactgcccc tgtgttttca ctggagaagg
     1741 cttcgtttta gtcagttgct gaaggcgttc ctttcgagaa taatggcttg gcttagcttc
     1801 aaacagagga ggcaggagct catcttccgt ttgtgctact ggttttgccg acgcaactcg
     1861 ctgtgattcg gtagaccagc taaattcctt ttcttgataa agccccctga tattgctaat
     1921 caggtcgctc tcatcatata aactcataat tggattttct ccaactagta cctcatcatc
     1981 tgcgactagt ggaaatcttt tttcatgtct aatcataagt catcctttcg aacccttatt
     2041 ataccatact taggccttat ttcctaattc tacgctgagt caactgattc catatcactc
     2101 aatccctaaa atctcacgaa tatcctcaac cgtcaaattc gctcggcttt cattgccatc
     2161 aaggactgtt ttgacaaggt tctttttatt ttcttgcaat tcttgaatct tctcttcgat
     2221 tgtccctcta gtaatcaggc gatagcattc aaccttttca gtctgcccca tgcggtgagc
     2281 ccggctgata gcctgtgctt ccacggcagg attccaccaa aggtcgacta ggatgactgt
     2341 gtctgcacct gtcaaattca agccaacgcc acctgctttc aaggaaatga gaaaggcatc
     2401 tcgacttcct gcattgaagg cctgtgtcat ttcttggcgt tggttagcag gtgttgaacc
     2461 agtcagagta taggatgtca tcccaatttc taccagctgt tcttctattt tttccagcat
     2521 atttctgaat tgggagaata tcaagaccct gtgttcacct tcttttagct gcaagagtaa
     2581 ttctttcaaa ctattaagtt tgccactctc accactaaac tcttccatga aaaggctggg
     2641 ggtatcgcag atttgacgta agcgagtaat tcctgatagg atttctatct tgctacgatt
     2701 gatttgagca tcatctgcgc cagctatttg agtccgcatt tgttgaagct gggctaggta
     2761 gatggctttt tgttcatctg tcagttcatt aagtacattg acctctatca aatcaggcaa
     2821 ttcctgaaga acgtcttcct tatgacgtct gagaacgaag ggttgaatgg tccgcgcaat
     2881 gtccttggct gctaatttac cgaagtcttg tttgcctggc aataaacctg gtaagacaat
     2941 ttggaaaatg gaccagagtt ccgtcaaatg gttttcaatc ggcgtacctg agagggcaaa
     3001 gcaattccca acctcaaact cacgcagtag ctgtgcaatc ttagattggg cattcttcat
     3061 gacctgcgcc tcatctaaaa tgaggtagtc aaagcgttcc tgtttataga gtgcaacatc
     3121 ctgtctgaag gatggatagg aggtaactaa gacttggtga ccattggcaa tgatctcttc
     3181 acgctgttcc ttgtttccat ggacaacagc cacatctaaa cttggagcaa accgcttaca
     3241 ctcatctaac cagttataaa tcaagctaga cggtgccaat attaaaactt tggaatcttt
     3301 tgtcatccga ctggacagaa aggcgatagt ttgcaaggtc tttccaagcc ccatgtcgtc
     3361 agctaaaatt ccgccaaaac catacgtatc cagcatagtc aaccacttaa gccctgtctg
     3421 ctgataatcc ctaagcgacg ttgttacttc cacagcagga agcgggaaca aatctggttg
     3481 agctagatag cttgccattt cctcaaattc cttggagaaa ctgacttggt tgaattgtga
     3541 caaggattga gccaattggt aaccggcaag agcatggact tgtacctgcc cctccttacc
     3601 atgacgggcc cgcaaataga ttagggtttg actgattttc ttggtttcct catcaaaaac
     3661 aaatacctta ccgctcgggc tagtatagtg gtcctcttga ttcagcaagg ctgtaatcgc
     3721 ctgatcaatt tcagattgtt caatacctga taagtcaaac gaaatatcca aaagtgagcc
     3781 gttacgcaca atttctaatt gaggtttggc ttcaatatat aaagcctgta gcctttctgc
     3841 tagatgaacc tgccccattt tttgtaatat aggcaattgt tgttggaaaa atggatagag
     3901 ctcctgctga ctaagagccg ctctctgggc atgatatgtc cccctaaagc cagctaaacg
     3961 aatagcctga tagaccctct ccaaatgttg gaaatggctg gcaaaaggca ggagagccaa
     4021 atcctcttca ctccttacct tacgtccatc aaaatccaaa accaattgga gggataaact
     4081 ttcatttgcc tccatctgaa tatgaaattc tggcttgaaa tcatgaatga tgaagcgttt
     4141 aggtgcctta acagtcccaa ttgtctgcaa atccagcaag cttaaagcca gacgattttg
     4201 gtcagggaaa tccacctgca cttttctcaa acctgattcg gttggaacaa gttcggaaat
     4261 ttggtaaatc agatgttctt gatggcgatt gacactataa accgtgccat ttactaagag
     4321 atagcgccca tgaaaaagag gtcggactgt tttttcgtga ataaccattt caatcatctg
     4381 cgtgtgaacg gtcacctcaa aatgatagag cccttcctcc cctgtcaacg gaagaacctt
     4441 caaggaggaa taggactgct gttgatagga aaagttaaaa tgttctagct gatttaacag
     4501 ctctaacccc tcctcaaaat aggcttgtgg cagacgaaaa tgtcgtccaa aatgagtaag
     4561 aatatccgaa tctataccaa ctttctctgg taccaaggcc cagagaaaat caaggagagc
     4621 ctgacttggt tcatcaaaat tttcataagt aacttgctca taataatttt tacctatttg
     4681 atagtgaccg ttggctttca caatgcgcaa aaaagctccg atgtcccgca caatgtacga
     4741 acgtgtatct ggcaaacggg taattttcaa ggtccaatct atctgacgat catagggcaa
     4801 taagctccct tcaactgaca actgatactt aagccccagt tcaggttctg gccgcaaaat
     4861 ttcatctaaa aagagaccgc caaaataagt ccgacggacg gtttccttat gttgttcgct
     4921 atcttctttc aaagactgct tcatatcctt gcctgaggca tcatttttta aaaaatactc
     4981 cgtggcagct aggtgttgac agtagccctt actttgaaat aactggcaac tacactgtaa
     5041 atcgctatct gcatcgccgt aagtaaagcg ctcaccagca atatccagca ccatctttcc
     5101 attctcacta tgaagaacag tcagttttcc agcctcgtac aaatcaattc cttcttggcg
     5161 aatccgccct ggcatcatgc gacccattct aactccttta tccttcaacc aatcatcaac
     5221 tcttctgtaa aatatatcta aaatattatc ttttcattat agcatatttt caatttgaat
     5281 tgtttaaata ggtatcaaaa aaacaccagc aggtaaactg gtgcctctaa tgaatagcta
     5341 aataataaat cgttgcttgc cacattttca agattgtttt tccgcttttc caaagccaaa
     5401 atagggcaaa tagcaggaaa acaactgcca ctactacgtt aatcaagcct tttccaacca
     5461 agaaaaactt gaaaaagaag acagtcacac aagtgagcaa ggcaaggagt aagacatgaa
     5521 tcagaactcc caaccagccc agccaatagc gaattccaaa gggagggtgt ttcttttcat
     5581 cgaagtctgc tagaccagtc aaaaactcaa ctagcaactc accaaaaaat tccatactag
     5641 cctacctttc ttacctgtcg ataatatttg gttcgtcgaa tcatcatctt gatagcctta
     5701 aaggaaagta aggttagcat actagccaca aatagacaaa aaaggaatat cacaaccaat
     5761 ggctgtttat actgattata gaccataatt gaaccaccag taaaggcgat aaaataggat
     5821 gccaaagtca caaaattgag ccagatacaa gccactagcc ccagccaata acgaaatccg
     5881 aaaggcttat actgactgtc ttcataaaat acaagaaaaa atgatgaaaa agaaagcaat
     5941 atcaaaaaag aacgccaaat cggaaccgct accataccaa cacctccaag tccattctag
     6001 catatttacg aataggtgca aagaaaaaag aggtttccct ctttacttcc gtttccgtgc
     6061 aatcagatga atcggtgtcc cttcaaatac aaaggccttg cggatttgat tttccaagaa
     6121 acgcatatag gagaagtgca tgagctcttc ttcgttgaca aagaccacaa aggtcggtgg
     6181 tttggtcgca acctgagtcg catagaaaat cttgagacgt ttacccttgt cagttggtgt
     6241 cgggttaatg gcaatggcat ccatgataac atcgttgaga acagccgatg gaatacgggt
     6301 attctggctt tcactgatgg ccttaatcat ctcaggcaac ttgtgcaagc gttgcttggt
     6361 caaggctgat acaaagataa tcggtgcgta agacaagtat tggaactggt cgcggatatc
     6421 atcttcccat ttcttcatgg tgtggttgtc tttttccaac gtgtcccact tgttgaccac
     6481 gataatcatt cccttaccag cttcatgggc aaaacctgcg atgcgcttgt catactcacg
     6541 aataccttct tctgcattga tgaccatgag tataacatcc gagcgttcaa tggcacgcat
     6601 ggcacgcata acagagtatt tctccgtatt ttcatagacc ttaccagact tgcgcatccc
     6661 tgcggtatca atcatggtaa attcctgacc ttctgggtct gtaaagtgcg tatcaatggc
     6721 atcacgagtc gttccagcaa caggcgacgc aatcacgcgc tcttcaccca aaatagcgtt
     6781 aatcaaactt gattttccaa cgtttggacg accaatcaag ctgaacttga taatatctgg
     6841 attttcttct gcttcttgga ctggcagatt ttcaatgata gcgtccaaga catcccctgt
     6901 accgatacca tgcacagatg atactgggta gggatcccca agaccaagcg aatagaaatc
     6961 atagatgtca ttacgcattt cagggttatc gaccttgttg acaaccaaaa tgactggctt
     7021 attggtcttg taaaggatac gcgatacata ctcgtcagca tccgtcacac cttccttgcc
     7081 tgatacgaca aagacgataa cgtccgcttc atccatggca atctcagcct gatgcttgat
     7141 ttgctccatg aaaggtgcat ccacatcatc aataccgcct gtatcaatca aggaaaactt
     7201 acggttgagc cactcaccag tagcataaat acggtcgcgg gtcacacctt ccacgtcttc
     7261 tacgatagaa atacgttccc ccgcaatacg gttaaatagt gttgatttac caacgttggg
     7321 acggccaacg atggcgatag ttggtagagc catagctcct cctcttctag tttacaataa
     7381 tttattcttt tctaagatag actttgtttc tggttgttca gcctgaccaa actgggcaac
     7441 cattcgctca gaccaagttt ctgtctgacg ggcacctgca taggctgtct gaacttggtc
     7501 gtaggcttgg attacttcca cgccttgctc cacatattct tcctgaaaga caatggtttc
     7561 acttgccaaa cgtggtttaa caggatggtt ttgggctggt cgacccaagg caatacagaa
     7621 aattggatag gtataatctg gcaagttgaa cagctctgct attgccatgg ccttatggcg
     7681 aatcataccg ataaagacgc caccgtaacc taggctttca gctgctaaaa gggcattttg
     7741 ccctgctagg ctcgcatcaa ctgaagaaat caggagattc tctgttcctt tggcatcaaa
     7801 gtctgaacca tggagttgag ccgccttgct ggcacgatta tggtcgccca caaaaaccag
     7861 aatggcctga gcctgtaaaa tagctggctg gggcaccaaa tcatagagtg cctgtttttt
     7921 ctcctccaac tgcaccacaa tgatggaata agactggaaa ttcttccagc tagacgcagc
     7981 tcgcccagct gaaataatag cttgcaaatg ttccgcctca ataggctcct ccgtaaaacg
     8041 acggacggaa gtatgattca gcatcaagtc tatggtttca ttcatcggcg gttatttcct
     8101 ttcaaatgca aatcgcgagc cagatagcga atccgctcca taacccgttt ggcctgccag
     8161 gtctcatcac cagacttgcc agaggcgaaa tgacgctcca aatcatcaaa ggagaaattg
     8221 gaggtaaaaa aggtcggcag attttcctgc atgcggtatt gaagaatgac ttgcaggaca
     8281 tcgtcacgta cccaaggact atgttgctcc gctccgatgt catctagcac caagacctga
     8341 gccatcttga tttcatcaat tcgctccttg acagaaccat ctttgatggc attttttata
     8401 tcgacaacaa aggttggata atgaagcata gtggttgatt gaagatgggt cttggacaag
     8461 agattggcta aataagccat caaataactt tttccaatac cgaaattgcc atagatgtag
     8521 agcccttttg gtttttcctc aaatcgtttg acaaaatctg caatagccag catgacttcc
     8581 acacgatttt catcactctt atcaatatcc gccactgtta cattcttcaa actcgcaggc
     8641 atattgatga gctggatacg attcttgatg gcttccaaac gacggtattc gaccaattcc
     8701 tctgtctcaa gataggacac atccgcatag ccctcgttca tgactaaaac cggttgatag
     8761 ccttttgcaa tataggcttc atcctgcttg acaaagaggt cacgctgact gatatattcc
     8821 aaaaacttag aaatggagag ggtgatttcc tgctgggtca gaccttcttt tttgataaaa
     8881 gcagcgactt caggatcact cactatctcc tgatagagtt gctgataaga ttttggactt
     8941 ggattggttg tttgcgacaa cctgtcttga actgatttca tcagctacct cctttgtttt
     9001 ccatttcttc taattcacga taaagagccg ccagcttggc ttgaccttcc tgcgtttgtc
     9061 cttgctggac ttcttcctta ctccactctg gcacattggt tttctgtggc tggctcgact
     9121 tggtaacaac ttgacctgtc ttcaactctc ttaggtaaag aacagctgcc tctgcactga
     9181 caattccctt gtaggaaaaa tcattgccca gcttcatagc gtatttttca tttagattgg
     9241 ctgagtccac cttgttaaag gtatagagga ccaagacatt gatgacttcg tcaagcagac
     9301 ccaaattggc caaatccgtc aagcattttc gttctgttcc tgtcacagct gccttgcgtt
     9361 gctccttgat aaaggacagg aaggttaggc tagattttga tttcgcttca cgaacaatgg
     9421 cttgttcttg ggcagtgagg ttggcgtttt ctgttggcaa tgactgacgt gactgttgca
     9481 agcgtttggt cgagatggtc tgtccaatag ctgttgcttt agcctggcga taggtttcca
     9541 accaggtcca ccccgcctgc tctgctatgt aactaagcgc aataatatcc tcagcttcat
     9601 cctgaaaaag aagcttatct ttagccatta atgccttgaa ggcagaccag tcaaaatcat
     9661 gtttcggttc aaaaacaact ggagcctgcc catccatggt aaagacctga gaaaatgttt
     9721 ttgagatatt ctgttcttga ttgggttggt gaacaagcag attctccatg cttgactccc
     9781 caatcttcct tgccaacaag ttcttataca agggtttcgc tagaaaactt tttacggtca
     9841 gaggggcttg tagcgccaaa cctgttaatt catctgcacg atagagttct aggagcccca
     9901 tggcagtcag aacatccaga gccttctcca aacgattcat cccaaaatcc atgtgattga
     9961 gaatgacagt ccatttgtaa cgtccttgcc cttgatcggc aaaactataa aagtaataat
    10021 aaagcgctaa tgcatcaaaa ccgataatcg gctggtagca ttggctaaga ctgacaatat
    10081 caggtgtaaa cgggctgatt tttatatagg caaataaatc atttggtttc atcttttttt
    10141 cccggtttta ccttacttcc tttggaaatc atctgtttaa gcaaattttc tagctctcca
    10201 acatctttga aagaacgata aaccgatgca aaacgcacat aggtgatttc atccaattcg
    10261 accaattctt ccattaccaa attcccaatg acatcggatt ctatttcact atcaccttgt
    10321 gctcgaacct tctgttcaat ccgattcacc acttcatcaa tatcatcggt tgacacaggg
    10381 cgcttttgag cagaacgaat aatcccattg aaaatctttt cacgtgaaaa ctgctctcta
    10441 gttccgtctt ttttcacaac gactagagtt ttctcttcaa tccgttcata ggtggtaaaa
    10501 cgttgaccac attggtcgca ggaacgacga cgacggatga tattgccatc ttcagcctga
    10561 cgactatcaa tgacacttga tttcaaactc tgacattttg gacaacgcat actctttctc
    10621 ctacataaac tttatcactt cagtatagca taaaaatgac aaaaataaaa gaaagcgaga
    10681 attactcact ttctgccaat aattcacctt gcttcttcaa tcgactggca acccattcac
    10741 gaaccaagcg atagacaacc gcaaaaattg gggtaaagaa gaccatacca agtaggccaa
    10801 acaaattacc accaatcaag gctgctgcta gggtaaagag agtcggaaga ccaactgatt
    10861 gaccaactac gcgcgggtaa atcacattcc cttcaatcaa ctgaataatc tggaaaaggg
    10921 cgatagacca gagtgccaag agcggatttt gtaccgccac aaaaagagca ctaatcaaac
    10981 acgctgaaaa gggaccgata taaggtacaa atgataggac cccagccaaa ataccagcca
    11041 tgctggcata aggaattcct gagagcgaat aactaacaaa gacaagtgtc ccaatgatac
    11101 acgcctcaac aatctgactc atcaagaatc ggtcataagt atcaacaata acttctccaa
    11161 tatagttcac tactctgaca gccttctctg gcaaggtagc ctgcaagaac tttctcgtca
    11221 tcgcctgcaa gtgttccttg ctccctaaaa tcgctagagt gaagaagaaa gccattatca
    11281 acgtcatagt gttcgaaaaa atccccgtca cattggacac caagccagat aaaatcggtg
    11341 tgaccaaact tgaaataagt gttaaattct tcaactgatc caaaaagctg gcaatctggt
    11401 ctccgatttg tcccgacaaa agaccatttg attcaagaaa attagttagg gcatttaccg
    11461 attttggaat agctgtacta ctaaccgaaa ccagttctga aacagtcgtc accaatgtag
    11521 gaagaacaat caccaccagt cctgtcacaa ttaaagcaaa tccaattaat actccaacaa
    11581 ttgccaaaga ccgcttggat ttctttaaaa aagaaatttt ttcaaactga tcttctaatt
    11641 ttttcatggg aacattgagg atgaaggcaa aaatagctcc aataaaaagc gaattcatac
    11701 tacctaataa ttgttgaata gctccataaa tactagacca gttgagaaca gctaacaatg
    11761 tcgctccaga taagagtatc aatatgactt tttctttaaa tgatgtattc ataacttttc
    11821 cattcttact tattggctat tattttatca cacgcttata gaaaaagaaa gagggaaagc
    11881 ttccctcctc tctactctaa atcaatcgcg catggcatat ccgacaccac gaactgtttt
    11941 tatatatgaa tcttgatgtg gcaaatccag tttaccacgt agatagcgaa tatatacatc
    12001 gacgacattg gtctcagaag ccgcttcata tttccaaaca cgctcaagaa gttgttctcg
    12061 actaacaggc tctgggctat tcattaaggt cgccaacaga tcatactctc ggcgggtcaa
    12121 attaatcaat tcatcacctc gagtcactgt tcgattttga aaatcaacct tcaaatcacg
    12181 ataggccgca tgcatgtgaa cctgtttaca gttattgtca ataaaatcac gaccacgaaa
    12241 aatcgcagag atttgctcca ctaaatcact gatgacaaag ggcttcacta cgtaggaaac
    12301 agcataagag aggacttctt ccccatattg actaacttct gtcggctcaa ctaccacaat
    12361 catgaccgtg gctggtttta tcgctaatag ttctgcagcc aattccttgc tggacatgtc
    12421 tgaaagctga aaactcatca gaatcaagtc aaaatccgtt tcatgtgcca aggacatagc
    12481 ctctttccct gtcgatgcat aatcaacaag atagtctttt ttctgcaatt ccatggaaac
    12541 aaaatgcgag agattgcgtt ctttaccagc aatcaaaatt ttcttagcca ttgtccatcc
    12601 ttttctattc tttcaaatgg tgtaggaatc gtattatgac tagaaagaag ggcgcttcca
    12661 cgcccatctt ttctattttg attcgctata ccagtcgtaa tggaagattc cttctttatc
    12721 tttacggtta taagtgtgag caccaaagta gtcacgttgt gcttgaatca agttcgctgg
    12781 caagttttca gcacggtagc tatcgaagta ggtaatagct gctgagaatg ttggtacagg
    12841 aactcctgct tgaactgcca aggcaacaac atcacgaact gcctgttgat acttagctgt
    12901 tacatcaagg aagtactcat ccaagagcaa gtttgccaag tcttcatcac gtccgtaggc
    12961 atctgtgatt ttttgcaaga agcgagcgcg gatgatacaa cctgcacgcc agatttttgc
    13021 gatttcacca aatggcaagt tccagttgtt ttcttttgat gctacacgca actgtgcaaa
    13081 accttgtgca taagacatga tttttgagaa gtacaatgct tgacggattt tttctaccaa
    13141 ttcagccttg tcgccttcgt atgcaaacgg agctggtttt ggaaggacct tgcttgctgc
    13201 tacacgctca tctttgtagg ttgagatata acgagcaaat acagattctg taatcaatga
    13261 caatggcaca cccaagtcaa gtgatgattg gcttgtccat ttaccagttc ccttgttacc
    13321 agccgcatcc aaaatgtagt caacgattgg tccatcttga ccttgatcgt ctttacgttt
    13381 caaaatatct gctgtgattt caatcaagta gctatccaat tcgcctttgt tccactcagt
    13441 aaagatgtca gccatttcat ccactgacaa accgagcaag tgttgcatga ggtcataaga
    13501 ctccgcaatc aattgcatgt cgccatactc gataccgttg tgtaccattt ttacgtagtg
    13561 accagctcca tctggaccga tataagtcac acatggtgct ccatcttctg gtgcttttgc
    13621 tgaaatttct tccaagacat ctgccaccaa ttcgtaagct tctttttgac caccaggcat
    13681 gatagatgga ccttcaaggg ctcctttttc accaccagat acacctgtac cgatgaagtt
    13741 aatacctgag tttgccaatt cttttgaacg acggatagtg tcttcgtaga aagtattacc
    13801 accatcgatc aagatgtcac cttcatccaa gtgtggcaag agcgcttgaa tggttgcatc
    13861 tgtaccagga ccagcttgaa ccataagcat gatgcgacgt ggtttttcga tagatgccac
    13921 aaagctttcc acatcgtaac ttggtaccaa gtttttacct gggttgcttg caacaacgtc
    13981 ttctgtttta tcagcagagc ggttgtaaat agctactgag tagccacgtg attcaacgtt
    14041 aagtgcaagg ttgcggccca taacggccat ccctacaaca ccaaaatttg ctttagtcat
    14101 ttgtttactc ctctaatttg tatctctttt attatacacc gaaagctgaa aattgacaag
    14161 aattttcaga taatttaact atcttgccaa tctgagttag tcctcatctc caaataaccc
    14221 ttgtaattgg gcaaaaggac tattggcctc ttttttctct tgagcttttt gttgaaaatc
    14281 ttcttcagtc attaaagccc aagcttgacc agatggtagt tcctgtccag cttcttcttc
    14341 aggtgtcaag actttgattg gtatagccag taaaatatta tctgctacac tctcatcaag
    14401 gacaatgtgg tcatcttcta ctaccagtac catatcctca tcaatcaaat cttgttcttt
    14461 aagaactgct tcattggcaa caaagagttc attgacgttt tggacctcat gcaaaacaac
    14521 tggttgcaga gaacgactgg atgccaaggt aatatcataa gtcatctgat agtccaagaa
    14581 aaagaaacct gattcaaaac ggatatttcc agtgacttcg actggcgaca agcctagaac
    14641 ttcaccattt cgagcttgca attcttcctg taaatccaag gttttatcaa aggagatgcc
    14701 atctagattt ttctgaatat cgtaaatatg aaacattgta ttcccctatt cagctagttc
    14761 tgtgatgtag ttatagactt cttgtccagc aactgcacca tttcctactg ccgttgcaat
    14821 ctgacgaagt tgattttgac gaatatcacc gatggcatag atgcctgatt gagtcgtctc
    14881 catcttttca ttagtgatga cccaaccagc ttcgtctgta attcctaggt ccgcaactgt
    14941 atcagtcatc ggatccagac cgacatagat aaagacacca ccgaaatcaa gttcactgac
    15001 ttcttcagtt ttcacatttt tgataaccac gctttgtaca cgtaagtcat cgcccttgat
    15061 ttcttcgact acgctatccc agataaagtt tattttttca ttggcaaagg cgcgatcttg
    15121 gatgactttt tgagcacgaa gttgatcacg gcggtgaaca attgtcacag actccgcaaa
    15181 ttgtgtcaag aagagagctt cttcgaccgc agaatctcca ccaccgacaa ccaagagttt
    15241 ttgtccacgg aagaaggcac cgtcacagac tgcacaatat gagacaccac ggctattgta
    15301 agtatcctca cctggaatac ctaacaaacg gtgttttgcc cccatggcta gaacgactgt
    15361 ctttgtctcc aaaacaccat cctcagtaat cactttctta atttgtcctt cttcctcaat
    15421 acggactagg gtgccaaaaa tatggtccac accgaatttt tccaagggtt caaacatttt
    15481 ttcagccaag gctggacctg aaatatggtc atagcctgga tagttttcaa tttccgcggt
    15541 attgttcatc tgaccaccat aaataccacg ttccaaaaga gctaccttta aattgctacg
    15601 ccctgcataa agagctgcag tcatccccgc aggacccgca ccaattacaa ctgtatcgta
    15661 catatacttt ttccttctac gctttaaaca ttaataagat tcccactact ccaaaggctg
    15721 caatgggaat tgtcatcaca ttaatcatca acaaatcaaa caagaaatct tgtcgttctt
    15781 gcaaggtttt atccacaccc tttgtcgcac gccagataaa ccagaccaga ctagaagtga
    15841 taatcaacaa ggaagctatt agcaatcctt gtaaataaaa acttagaatg ttttgtaaca
    15901 tctttttcct cgattacttt aaaaggtttg acgcttggct ttacgttctg cacgaccctt
    15961 tgcacgcgct tcaactcgct tggtcttgcg acgtttttca tcaacagccc attgaatttt
    16021 cttcttgtag cctggtttga cttttttctt tttcttcttg accaagccaa tcatttccaa
    16081 atctagtttt tcacgagatt tttcacggtt agcacggcgg tcacggtcgt aggtatcgac
    16141 aaattcgcca tttttcattt cttttggcaa gaatttgata ttgagttttt ctagctctcg
    16201 aatatctgca tcatcgcttg gctgataaag ggtaatggca atgcctgata aaccattacg
    16261 acctgtgcgc cccacacggt gaacaaagaa ggaaagatcc tgtggaatgg catcattgat
    16321 gacatgactg acgccctcaa tatcaatccc acgtgctgct aaatccgttg caacaatgta
    16381 ctgatagtcc aagttcttca cctggttcat catccgcttg cgctcacgtg gaggaatatc
    16441 cccatgaatc tttgcgacac gaagaccgtt cgcagtcaaa tagctatgca attcatctgc
    16501 acgtgtcttt gtattgacaa aaatcatggc caagtaaggt tgcatgagct tggttacttc
    16561 caagatttga gcattacggt catgcccctt ggttgaaatc agccagtttt caatggtatc
    16621 tgaaatgacc gtatgggtct tgatttgttc catgactgga ttggacaggt attttttcaa
    16681 aaacggttgg agtttctgcg gaatggtcgc tgaaaagacc ataaattgca agtcttttgg
    16741 caggctgcca gcaatcttat caactgtttc caaaaagccc atgtccaagg tcatatctgc
    16801 ctcatcaacc acaaaggttt tggctttatg gatagcaagg tcacctgatt tgaccaaatc
    16861 atagatacgc cctggtgtcc caacaacaat gtgaggctga ctagcttgaa gcttgtcaat
    16921 ttgacggttc ttatccgtac cgccaacata attggtcaca cgaacttcga tgtccgaatg
    16981 acttgccaac tggcgtgccg cttgataaat ctgagtagct aattcacgag atggggctgt
    17041 aataacagcc tgaacttggt ccaattcctc acttaatttt tggaaaatag ggatcaagaa
    17101 ggtatgggtc ttacccgaac ctgtttttga ttcccctatc aagtctcgcc ctgataaaac
    17161 aacaggaatc aatttctcct gaacttctgt cggctggaca aagttaattt ctttcaaagc
    17221 ctcctgaata taaggcttga gtttcatatc tgtaaatttc atagtttcct ctttagttgt
    17281 atttccctct attatagcac gatttaggtg gacaagcaaa aaggacggat acccgtccta
    17341 atcaactctc gcttgcttca gtaaattctg cctcaataat tccaagttcc ttctcttctt
    17401 ccaaacttgc tttaaaggcc tcagtgagtt ctaattcgcc atcaaaatca ccatttattt
    17461 ttttcacaaa tgtatctgcc aacatccctc ccatgggctg gaaggtaaaa taggtcaaac
    17521 ctcctgaaat cagaccaccc aaaataggaa ctgcattggc aatggtcttt tcaacagtct
    17581 ttttggtaat tttcacacca atcactgcgg ctaccttttt caccaaggga tggga
//
LOCUS       DASGBY010000032        17376 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.032, whole genome shotgun sequence.
ACCESSION   DASGBY010000032 DASGBY010000000
VERSION     DASGBY010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17376
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.032"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(68..550)
                     /locus_tag="U1396_000817"
     CDS             complement(68..550)
                     /locus_tag="U1396_000817"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEM5342020.1"
                     /translation="MKKEVTVESFELDHTIVKAPYIRLISEEVGPKGDIITNFDIRLI
                     QPNENAMDTAGLHTIEHLLAKLIRQRIDGLIDCSPFGCRTGFHMIMWGKQDSEKIAQV
                     IKSSLEEIAEGITWEDVPGTTIESCGNYKDHSLHSAKEWAKLILSQGISTDAFERKPI
                     "
     gene            678..2291
                     /locus_tag="U1396_000818"
     CDS             678..2291
                     /locus_tag="U1396_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEM5342021.1"
                     /translation="MEIITVVVTLVSALIGLVLGYFAISLKMKSAKETAELTLLNAEQ
                     EASNVRGRAEEQAEVILKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQELK
                     QIESRLTERATSLDRKDDNLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKLEEQKALE
                     LERVAALSQEEAKEIILTDTRDKLTHEIATRIKEAEREVKERSDKMAKDLLAQAMQRI
                     SGEYVAEQTITSVHLPDDAMKGRIIGREGRNIRTFESLTGIDVIIDDTPEVVVLSGFD
                     PIRREIARMTMETLLQDGRIHPARIEELVEKHRVEMDNRIREYGEAAAYEVGAPNLHP
                     DLIKIMGRLHFRTSYGQNVLRHSIEVAKLAGVLAAELGENVNLARRAGFLHDVGKAID
                     REVDGSHVEIGTELAKKYKENPIVINAIASHHGDVEATSTIAVIVAAADALSAARPGS
                     RRESMEAYIKRLQDLEEIANSFEGIKQSYAIQAGREIRIIVHPNKVTDDQITILAHDV
                     REKIENNLDYPGNIKITVIRETRATDVAK"
     gene            2439..3065
                     /gene="gmk"
                     /locus_tag="U1396_000819"
     CDS             2439..3065
                     /gene="gmk"
                     /locus_tag="U1396_000819"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEM5342022.1"
                     /translation="MKERGLLIVFSGPSGVGKGTVRKEIFESSDNKFEYSVSMTTRPQ
                     RPGEVDGVDYFFRSREEFEDLIRQGQMLEYAEYVGNYYGTPLTYVNETLDKGIDVFLE
                     IEVQGALQVKKKVPDGVFIFLTPPDLEELQDRLIGRGTDSEEVIAQRIERAKEEIALM
                     REYDYAVVNDEVPLAAERVKRIIEAEHFRVDRVIGRYDEMIREQIAER"
     gene            3089..3403
                     /locus_tag="U1396_000820"
     CDS             3089..3403
                     /locus_tag="U1396_000820"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001817694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEM5342023.1"
                     /translation="MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQEFTSV
                     KSTLRALEEIESGNVVIHPDPEAKREAVRRRAEEAKRLAEEEERKIKAQIAKEKEEGE
                     KI"
     gene            3747..6140
                     /locus_tag="U1396_000821"
     CDS             3747..6140
                     /locus_tag="U1396_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEM5342024.1"
                     /translation="MLAQIIVDVPLMQTDQAYSYRVPAELEEGLKVGVRVHVPFGKGN
                     RLIQGIVVDLIDEDDENNLQDLKELAEVLDYSPVLNQEQFWLADQMRKSVFSYKIALL
                     KSMLPSLLNSTYDKLLRPGLGLEMAEQISLFGDKEQIRFSDLDVTEQGKIMRLAQSGK
                     ILVDYVAKDKKQIKTEKWYRVCLEKLREADISNRAKKRQQLREFLLEHSEDQLLSNLK
                     SAYSADTLRYFQEKGYIEVWEEEVSRTQGVFDKVEKTQALDLNPEQAIAVREIVASIG
                     QESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQMTNRFISRFGQQ
                     VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIFAPLTNLGVIIIDEEHEATYKQD
                     SNPRRYHARDVAKLRADYNRATLVLGSATPSLETRARASRGVYGRLTLNQRANPLARI
                     PEVEVVDFRDYIGQQEASNFTPVLIEKIREKLARKEQVVLMLNRRGYSSFVMCRDCGS
                     VDQCPNCDISLTLHMDTKTMNCHYCGFQKGIPQTCPNCQSRSIRYYGTGTQKAYDELQ
                     ELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPNVTLVGVL
                     NADTALNLPDFRSSERTFQLLTQVAGRAGRADKEGEVLIQTYNPNHYAIAFAKEQDYE
                     GFYRYEMGIRKNLGYPPYYFTVGLTFSHKSEEFVVKKAYETVAFLRQHLTDAIQILGP
                     TPKPIARTHNLYHYQIILKYRHEDRLEEVLNQILDWTQERENQDLRLIIDNEPQNMM"
     gene            6272..7210
                     /locus_tag="U1396_000822"
     CDS             6272..7210
                     /locus_tag="U1396_000822"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEM5342025.1"
                     /translation="MTKLIFMGTPAFSATVLRGLLADGNYNILAVVTQPDRAVGRKKV
                     IQMTPVKEVALEYNLPVYQPEKLSGSQEMDELMNLGADGIVTAAFGQFLPTELLNSVD
                     FAVNVHASLLPKYRGGAPIHYALINGDERAGVTIMEMVKEMDAGDMISSDSIAIEESD
                     NVGTLFEKLAVVGRDLLLQALPAYIAGDLKPVAQNPEQVTFSPNIQPEEEVLDWKKSA
                     RQLFNQIRGMYPWPVAHTYWQGERFKIQEAVEVEVEGPVGRVITRSKKELIIATGQGA
                     LSLKTVQPAGKPKMTIADFLNGAGRDIAVGDQFGDQ"
     gene            7197..8510
                     /gene="rsmB"
                     /locus_tag="U1396_000823"
     CDS             7197..8510
                     /gene="rsmB"
                     /locus_tag="U1396_000823"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEM5342026.1"
                     /translation="MVINKHETARSLALSVLEQVFDQGAYSNIALNKALESSRLSAQD
                     KGLATELVYGTVSRKITLEWYLAHFIEDREKLDTWIYYLLMLSLYQLVYLDKLPTHAV
                     VNEAVNIAKRKPGTDKFVNAILRKISQSTLPNPADIKRKNKRLSVQYSVPVWLVQTLI
                     AEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSPVGLVKSHGHFA
                     GTDHFKKGLITIQDETSQLVAPTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYAL
                     DLYDHKLNLIEENAHRLGLEDKIETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIR
                     RKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIITYSTCTIIAKENQEVIQEFL
                     QNHPNFEQVTLEHPQTDIMVDGCLLITPEQYKTDGFFIGQLRRKS"
     gene            8548..9285
                     /locus_tag="U1396_000824"
     CDS             8548..9285
                     /locus_tag="U1396_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEM5342027.1"
                     /translation="MEIALLTDVGQKRSNNQDYINRYKNRAGIDLVVLADGMGGHRAG
                     HIASEMAATDLGAAWVDTQLVTLNDVREWMVAIIDAENQKIHELGQTEEYKGMGTTLE
                     AVVVIDNQMIYAHVGDSRVGLIRDGEYTRLTNDHSLVGALVRAGQLTEEEAQRHPQKN
                     IVTQSIGQAEPIEPDIALKTLEVGDYVLINSDGLTNMVPTEDIRDIVLSDVSIESKVE
                     TLVRFANNAGGLDNITVGLLHITEEAR"
     gene            9285..11279
                     /gene="pknB"
                     /locus_tag="U1396_000825"
     CDS             9285..11279
                     /gene="pknB"
                     /locus_tag="U1396_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEM5342028.1"
                     /translation="MIQIGKIFAGRYRIVRQIGRGGMADVYLARDLILDGEEVAVKVL
                     RTNYQTDQIAIQRFQREARAMAELDHPNIVRISDIGEEDGQQYLAMEYVNGLDLKRYI
                     KENAPLSNDVAVRIMGQILLAMRMAHTRGIVHRDLKPQNVLLTSNGVAKVTDFGIAVA
                     FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIILFEMLTGRIPYDGDSAV
                     TIALQHFQKPLPSVREENANVPQALENVVLKATAKKLNERYKSVAEMYADLASALSMD
                     RRNEPRVELEGNKVDTKTLPKLSQANVETKVPHTNSSAQVSATDKSPGKKEVAKSGNK
                     PVSKPRPGMRTRYKVLIGAILLTVIATGLMFFNTPRTVTVPDVSGQTVEKATEMIEVA
                     GLEVGNITEEATATVDEGLVIRTSPAAKTTRRQGSKIDIVVATAALASIPDVVDKESD
                     TARQELEALGFQVTIKEEYSEKVAQGLVIKTDPGANSSAEKGAKITLYVSKGVAPQVV
                     PNVVGKSQENATQILQTAGFSIGTITQEYSSSVTAGQVISTDPVANTELAKGSIINLV
                     ISKGKELIMPDLTSRNYTYSQARSQLQALGVNAESIEKQEDRSYYSTTSDIVIGQYPA
                     AGATIDGTVTLYVSVASTRTSSDSSTGSSTSTSTSTDSGQ"
     gene            11559..12263
                     /locus_tag="U1396_000826"
     CDS             11559..12263
                     /locus_tag="U1396_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HEM5342029.1"
                     /translation="MEKMRKVQFFLLIESMIFTMAAFDVVANEASRTLLLFSALLLVI
                     WYFLGRKVNSVLLVSSLSLLFLVFVLNPFFIIGIMLLVVYMLINFFSRYEKRNQYTHI
                     VFSDYSLQVQKEKNRWFGNHDHSQDRFGFEDINIVRLFGNDVVDLDKTVLVGRDNIVV
                     IRKTFGRTKIIVPIDVEVALSATSIYGRVSFLGESYWDLRNESIAVNSSDYQESHKRV
                     KVVTNNILGDVEVVRV"
     gene            12260..13276
                     /locus_tag="U1396_000827"
     CDS             12260..13276
                     /locus_tag="U1396_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5342030.1"
                     /translation="MRKRTYLLLAWFACLIVFVVIASTLPLLNYSLLDVTLWISTEQL
                     VFTLILLVIVLTLFLAVMVQTVSLASTQVMRTKLQAILKNKSIRTDTESDQLLLQLSD
                     KVRNLTRQVQLVDNQDLVKKEEIVEGERKRIARDLHDTVSQELFATSMILSGLSSNLS
                     TLPQETLQEQLMLVKDMIESAQRDLRILLLHLRPSELESKTLVEGFELILREVSDKSN
                     IIVHFQHEVEELPKLIEEHLFRIAQEIISNTLRHAKAKHLDVYLLQKETELQLKMTDD
                     GIGFQQGADDELSYGLQNIRERVEDMAGTIKIRTAPNKGVAIDIRIPLLKGKEDEYDS
                     SDAG"
     gene            13248..13889
                     /locus_tag="U1396_000828"
     CDS             13248..13889
                     /locus_tag="U1396_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5342031.1"
                     /translation="MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAK
                     ALEVKPDVVVMDLVMPKMTGVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARG
                     YMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
                     KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ"
     gene            13939..15339
                     /locus_tag="U1396_000829"
     CDS             13939..15339
                     /locus_tag="U1396_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5342032.1"
                     /translation="MDAKLRYKAKKIKIVFFDIDDTLRVKNTGYIPESIQQVFNSLKE
                     KGILTGIASGRTPYGLVPEIKALKPDFFAMINGSYVEDAKGQVVYHQPMPQNIVESVL
                     NWAKEIGIEYGMLGSQKGTLSARTDRISQVIDLIYEGLEINPTFYKENDIYQLLTFEK
                     DGHEVELPEELQAELRSVRWDAISSDIVLKGSSKATGVAKVVEKLGLKPENVLVFGDG
                     LNDIELFDYAGISIAMGHSHPELQKHADYITKKVEEDGIFDALEKLGMVEKEKYFPQL
                     DLENVTGPVAHIKTNHGKLTVKLFPEIAPKTVANFVALSKDGYYDGIIFHRIIKDFMI
                     QGGDPTGTGMGGESIYGTAFEDEFSMEAFNLRGALSMANAGPNTNGSQFFIVQNQNFP
                     YNAKELERGGWPKEVAEAYVKNGGTPHLDQRHTVFGHLVDEESFVVLDAIAAVATDSA
                     DRPHEDVVIETIEIED"
     gene            15341..15712
                     /locus_tag="U1396_000830"
     CDS             15341..15712
                     /locus_tag="U1396_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEM5342033.1"
                     /translation="MKIGDKLKGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNI
                     YDHLKLGQEVLVQVVDFDEYTEKASLSIRTLEEEQQKIPRHHRFTNERNKIGFSPLAK
                     QLPKWIEEAKGYLKEHKEKKV"
     gene            complement(15739..16665)
                     /gene="cysK"
                     /locus_tag="U1396_000831"
     CDS             complement(15739..16665)
                     /gene="cysK"
                     /locus_tag="U1396_000831"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEM5342034.1"
                     /translation="MAIYQNITQLVGKTPVIKLNNIVPEGAAEVYVKLEAFNPGSSVK
                     DRIALAMIEDAEKAGTIKPGDTIVEPTSGNTGIGLAWVGAAKGYKVIIVMPETMSVER
                     RKIIQAYGAELVLTPGSEGMKGAIAKAKEIAEEKNGWVPFQFANPSNPKVHEDTTGQE
                     ILEDFGTTGLDAFVSGVGTGGTVSGVSHVLKTANPDIAIYAVEADESAVLSGEAPGPH
                     KIQGISAGFIPDTLDTSAYDGIIRVKSDDALATGRAIGGKEGFLVGISSGAAIHAAIE
                     VAKELGTGKKVLAILPDNGERYLSTALYEFND"
     gene            complement(16755..>17376)
                     /locus_tag="U1396_000832"
     CDS             complement(16755..>17376)
                     /locus_tag="U1396_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEM5342035.1"
                     /translation="KTIREDGIVEEEIKKSRFICFMKRVTSEEEARDFINKIKKEHYK
                     ATHNCSAFVLGENMEIKRSSDDGEPSGTAGVPMLTVLENHELTNVATVVTRYFGGIKL
                     GAGGLIRAYAGVVANAVKEIGVVEVKEQEGISISMSYTQYQEFANWRAEQGLEEFDAQ
                     FTTEVSTMIFVDKEFLEQTLASLTDFYHGKVSAEKANSRIVEVPVY"
BASE COUNT         5220 a         3314 c         4029 g         4813 t
ORIGIN      
        1 taaacttctt caatttttta tattttagga ttttgtctac gttctgagcg gtgtatccgt
       61 ttttttgtta gattggtttt ctttcaaagg catctgtaga gattccctga gaaaggatta
      121 gtttggccca ttctttagct gaatgaaggc tgtggtcttt gtagttaccg catgattcaa
      181 tggttgttcc tgggacatcc tcccaagtga tgccttctgc aatttcttcc aaactcgact
      241 tgatgacttg agcaatcttt tcagagtctt gttttcccca cataatcatg tggaaacctg
      301 tccgacaccc gaaaggagag cagtcgatta gcccatcgat gcgctggcga attagtttag
      361 ctaatagatg ctcaatggta tgtagaccag ctgtatccat tgcattttcg ttgggttgga
      421 taaggcgaat atcaaagttt gtaataatgt ctccttttgg tccgacttct tcagaaatta
      481 agcggatgta aggtgctttt acaatagtgt ggtctagctc gaagctttcg acagtgactt
      541 cttttttcat ggtttcctcc aaataagtga tgaatttatt ataccatatt tgacaatttg
      601 gaattgtgaa atcgtttcaa atatgataaa atagatacag attttgtgaa aatcgaatta
      661 taaaaaagag gtagaatatg gaaatcatta cagttgtagt gactcttgtt tctgctctca
      721 ttggtttagt attaggttac tttgccattt ctttgaagat gaaatctgca aaagaaactg
      781 cagaattgac acttttaaac gcagaacaag aagctagtaa tgttcgtggt cgagcagaag
      841 agcaagctga ggttattcta aaaacagctg agcgcgatcg ccagaccttg aaaaaagaat
      901 tactcttgga agctaaggaa gaagctcgta agtaccgaga agaaattgca gaagaattta
      961 agtcagaacg tcaagagttg aagcaaatcg aatcacgctt gacagagcgt gcgaccagct
     1021 tggaccgcaa agacgataat ttgaccaaca aggaaaagac tttggaacaa aaggaacaaa
     1081 gtctgaccga taaagctaag cacattgatg agcgtgaaca agaagttgta aaactcgaag
     1141 aacaaaaagc tttggagtta gaacgagtgg cggccctcag tcaagaagag gcgaaggaaa
     1201 ttatccttac cgatacacgc gataaactga cgcatgaaat tgcgactcgt atcaaggaag
     1261 cagagcgtga agtaaaagag cgttctgaca agatggcaaa ggacttgtta gcccaagcga
     1321 tgcaacgcat atcaggtgaa tatgtggctg agcagacgat tacatcggtt catttaccgg
     1381 atgatgcgat gaagggacgg attattggac gtgagggtcg aaatattcgt acctttgaaa
     1441 gtctcacagg tatcgatgtt atcattgatg atacaccaga agtggttgtt ctatcaggtt
     1501 ttgatccgat tcgccgtgag attgcccgta tgaccatgga gaccttgctt caagatggtc
     1561 gtattcatcc agctcgtatt gaggagttgg ttgagaaaca ccgtgtagag atggataacc
     1621 gtattcgtga gtatggggaa gctgctgctt atgaagttgg ggcaccaaac cttcatccag
     1681 acttgattaa aatcatggga cgtttgcatt tccgtacctc ttatggacaa aatgttcttc
     1741 gccactcaat cgaagttgct aaattagcag gtgtacttgc tgctgaattg ggcgagaatg
     1801 tgaatttggc acggcgagct ggtttcctac atgacgttgg taaagctatt gaccgtgagg
     1861 tggatggaag ccacgttgaa atcggtacag aattggctaa gaaatataaa gagaatccaa
     1921 ttgttatcaa tgcgattgct agtcaccatg gcgatgtaga agcgacaagt actattgcag
     1981 tcattgtggc tgcggcagat gctctgagcg ctgctcgtcc aggttcgcgt cgtgaatcta
     2041 tggaagccta catcaaacgt ctgcaagact tggaagaaat cgccaacagt tttgaaggga
     2101 ttaaacaatc ctatgctatt caggctggtc gtgaaattcg gattatcgtt catcctaata
     2161 aggtcactga tgatcagatt accatcttgg cccatgatgt tcgtgagaaa attgaaaata
     2221 atctggatta tccaggaaat atcaaaatca cagttatccg tgaaacaaga gcgacagatg
     2281 ttgctaagta aatgtagaag agtccgaagg gctctttttc tactggctca aagttcgttt
     2341 agggttggga atagaaaata ttctaatcgt atttaaaagc agttgaaatt catgctaaat
     2401 tttgttacac tagaatgaaa gatttaaaag gagatatcat gaaagagcga ggcttactca
     2461 ttgtcttttc tggcccatct ggtgttggaa aaggaacagt tcgaaaggaa atttttgaaa
     2521 gctctgataa taaatttgaa tattctgtat ccatgacgac acgtccacag agaccgggag
     2581 aagttgatgg agttgactat ttcttccgta gtcgtgagga atttgaagat ttgattcgcc
     2641 agggtcaaat gttggaatat gcagagtacg ttggaaatta ctatggaaca cctctgacct
     2701 atgtcaatga aactcttgat aagggaattg atgtcttttt agaaattgaa gtacagggtg
     2761 ccctccaagt gaagaaaaag gttccagatg gggtgttcat tttcttgaca ccacctgact
     2821 tggaggagtt gcaagatcgc ttgattggtc gcggaacgga tagtgaggaa gttattgctc
     2881 aacgtatcga acgtgccaag gaagagatcg ccttgatgcg tgagtatgat tatgcagttg
     2941 tgaacgatga agtcccgttg gctgctgagc gtgtcaagcg tattatcgaa gcagaacatt
     3001 tccgtgtaga ccgagtgatt ggtcgctacg atgaaatgat tcgtgaacag atagcagaac
     3061 gataaaagaa agaagagaga atcgcattat gatgttgaag ccgtcaattg ataccttgtt
     3121 ggataaggta ccatctaagt attctttggt tattcttgag gctaagcgtg cccatgaatt
     3181 ggaagcaggt gccaaaccaa ctcaagaatt cacctcagtg aaatccaccc tacgcgcctt
     3241 ggaagaaatt gaatcaggta atgtagtcat tcacccagac ccagaagcga aacgtgaggc
     3301 tgttcgtcgc cgtgccgaag aggctaaacg tttggcggaa gaagaagagc gtaaaatcaa
     3361 agctcaaatt gctaaagaaa aagaagaagg cgaaaagatt tagaaacaag actcggttgg
     3421 gattgccatc cgggtttctt ttcactttcg gaatgatgaa agttttgaca gaaaggaggc
     3481 aggtcattta gtttatcttt taatatttgg ggagtgggaa agaactcgac caagataaaa
     3541 agagttcgtc ttcccacccc cgcacagttg attaggctag atttggagtg caaaacacga
     3601 acaaatctgc caatcaacca ctgcgctgag atgttgacac gaactctgag tagtggtcct
     3661 gggctttttg cccagcctcg ttatacataa agtgaacctt gttcgcatca gtcgtgatat
     3721 tagaaggtaa aataaatgga gatggtatgt tagcacagat tattgtagac gtccctttga
     3781 tgcagacaga tcaagcttat tcctatcgag ttccagctga gttggaagag gggctcaagg
     3841 ttggcgtgcg tgtccatgta ccctttggta agggaaatcg gctgattcaa ggtattgtag
     3901 ttgatttgat tgatgaagat gatgaaaata acttacaaga cttgaaagag cttgccgagg
     3961 ttttggacta tagtcctgtt ctcaatcaag agcaattttg gttggcggac cagatgagaa
     4021 agtcggtctt ctcctataaa attgccctct taaaatccat gttgcctagc ttgctcaatt
     4081 cgacctatga caaattgctc cgtccagggc ttggtttgga aatggcagag cagattagtc
     4141 tgtttggtga taaggagcag attcgttttt ctgacttgga cgtgacagag caagggaaaa
     4201 tcatgcgtct ggcccagtca ggaaaaatct tggtagacta tgtggccaag gataagaagc
     4261 aaatcaagac agaaaaatgg taccgagttt gtctggagaa attacgagaa gcagacatca
     4321 gcaatcgagc caagaaacgg cagcagttaa gggaatttct tctggaacac tcggaagacc
     4381 agcttctttc aaacctaaaa tcggcctatt cagctgatac gctccgctat ttccaagaaa
     4441 aaggctatat agaagtctgg gaggaggaag tgtcgcggac tcagggagtt tttgataagg
     4501 tggaaaaaac gcaggccttg gatttgaatc cagagcaggc gattgcggtt cgtgagattg
     4561 tggcctctat cggtcaggaa agtcagacat ttctactgca aggagtgaca ggttctggga
     4621 agacggaagt ctatctccag gttattgata gggtcttgaa aatgggaaaa acggctatta
     4681 tgctagtgcc tgaaatttcc ttgacccctc agatgaccaa tcgttttatt tctcgttttg
     4741 gccagcaggt tgccatttta cactcgggct tgtctgatgg tgagaagtat gacgagtggc
     4801 ggaagattga ggcggggaat gcccaggtgg ttgtcggggc tcgttcggct atttttgcac
     4861 cattgacaaa cttgggtgtt atcatcattg atgaggagca tgaggcgacc tacaagcagg
     4921 acagcaatcc acgacgctac catgcgcgtg atgtggcaaa gttgcgggct gattataatc
     4981 gagcgaccct ggtcttgggt tctgctacgc cgagtcttga aacacgggct cgggctagtc
     5041 gaggagtcta tggaagactg actcttaacc agagggccaa tcccttggct cgtattccag
     5101 aagtggaagt tgtggatttc cgtgattata tcggtcagca ggaggctagt aattttaccc
     5161 ctgttctgat tgaaaagata agagaaaaat tggctcgtaa ggaacaggtc gttcttatgt
     5221 tgaataggcg tggttattct tcttttgtca tgtgtcgtga ttgcgggagt gttgaccagt
     5281 gtcccaactg tgatatttcc cttacgcttc acatggatac aaaaacgatg aattgccatt
     5341 attgtggttt tcaaaagggg attcctcaga cctgtccaaa ctgtcaaagt cgttctattc
     5401 gttattatgg gacgggtacg caaaaggcct acgatgaatt gcaggagctc ttgccagaag
     5461 ctagaatttt gcgtatggat gtggatacta ccaagaaaaa aggtgctcat gaggacttgc
     5521 tcgaacggtt tggtcgaggc gaagcggata ttcttctggg aactcagatg attgccaagg
     5581 gcttggattt tccaaatgtg accctagttg gcgtgctcaa tgcggatacg gctctgaatt
     5641 tgcctgattt tcggtcttct gagcggacct tccagttgct aactcaggta gctggtcggg
     5701 ctggtcgagc tgataaggaa ggggaggtcc tgattcagac ctataacccc aatcattatg
     5761 ccattgcttt tgccaaagag caggattatg aaggtttcta tcgttatgag atgggcattc
     5821 ggaaaaatct tggttatcca ccttactatt ttacagttgg cttaaccttt tcgcacaagt
     5881 cagaagaatt tgtcgtgaaa aaagcctatg aaactgtagc ctttctccgt caacacttaa
     5941 cagatgcaat tcaaatcttg ggaccgacgc ccaagcctat tgccagaact cataatctct
     6001 accactacca gatcatcttg aaataccggc atgaagaccg tttggaagag gtattgaatc
     6061 agattttgga ttggacacag gagagagaaa atcaagattt gcgactgatt attgacaatg
     6121 aaccgcagaa tatgatgtga ggtcactatt gaccttgcat ttttttgttt taagaacctt
     6181 tgattaagga aaaaataagc aaaaatgata taattagggg atagtataat tgatatgaat
     6241 cagaaaatga aaaggagatg agaacacgaa tatgacaaag ttgattttta tgggaacgcc
     6301 agcgttttca gcgacggtct taagagggct cttagctgat ggaaattata acatactggc
     6361 agttgtaacc cagccagacc gagctgttgg acgaaaaaaa gtcatccaaa tgacacctgt
     6421 gaaagaagta gccttggaat acaatttacc agtctatcaa ccagagaagc tatctggaag
     6481 ccaagaaatg gatgagctga tgaatttagg agcagatggg attgtgacgg cagcttttgg
     6541 gcaattccta ccaaccgaat tattgaactc agttgacttt gcagtcaatg ttcatgcttc
     6601 tcttcttcct aaataccgtg gcggtgcccc tattcattac gctttgatta acggtgatga
     6661 acgtgccggc gtaaccatca tggaaatggt caaggaaatg gatgccggtg acatgatttc
     6721 cagcgatagc attgctattg aagaaagcga caacgtcggc accttgtttg aaaagttggc
     6781 tgttgttggt cgggatttat tattacaagc cttaccagcc tatattgctg gtgacttgaa
     6841 accagtcgct caaaatccag aacaggtaac cttctcacca aatatccagc cagaagaaga
     6901 agtgcttgat tggaagaaat ccgctcgtca actcttcaat cagattcgcg gtatgtatcc
     6961 atggccagtt gcccacacct attggcaagg agaacggttt aaaattcaag aagctgtcga
     7021 agtagaagtt gaaggaccag ttggtcgggt tattactcga agcaagaaag aattgattat
     7081 tgcgacaggt cagggagccc tttctctgaa aactgtccag ccagctggta agccaaaaat
     7141 gaccattgca gactttttaa atggtgcagg tcgagatatt gcagtaggag atcaatttgg
     7201 tgatcaataa acatgaaaca gcaagaagtc tagccctatc tgtattggaa caagtctttg
     7261 atcaaggtgc ttactcgaac atcgctctca ataaggccct agaatcttct cgtttatcag
     7321 cacaggacaa gggcttggcg accgagttgg tttatgggac ggtttctcgt aaaattaccc
     7381 tagagtggta tttggcacat tttatcgaag atagagaaaa gttggacact tggatctact
     7441 atctcctcat gttgagcctc taccagttgg tatatttgga caaattgcct acccacgcag
     7501 ttgtcaatga ggcagttaat attgccaagc gaaagcctgg aactgacaaa tttgttaatg
     7561 ccattttgcg taaaatcagt caatcgactt tgccaaatcc agcggacatc aaacgaaaaa
     7621 ataaacgtct atccgttcag tattctgtgc cagtttggtt ggtccaaacc ctgattgcag
     7681 aatatggcga tgaacgtgca gagaagattt tccaaagctt acatgatcgg aataaggcca
     7741 gtgtacgtgt gacagatggt caacaagtgg agcgattggc agaggagcta ggcgcccaac
     7801 actcgcagtt atcaccagtt gggttggtta aatcccatgg acactttgcg gggacagatc
     7861 atttcaagaa aggacttatc accattcaag atgaaaccag tcaattggta gctccgactt
     7921 tggatattca aggagatgaa atcatcttgg atgcctgtgc agctccgggt ggaaagacct
     7981 gtcatatggc aagttatctt acggatggaa aagtttatgc gttggattta tatgatcata
     8041 aactaaacct gattgaagaa aacgcacatc gtttaggcct agaagataag attgagacca
     8101 aaggtctgga cgccagtcgt gttcatgagg aatttggacc tgataccttt gataagatat
     8161 tggtagacgc cccttgttca ggtattggac tcatccgccg taagccagat attcgttata
     8221 acaaggcatc gatggacttt gattctctaa agactatcca gttgcagata ctagacagtg
     8281 tttgccaaag cttgaaaatt ggtggtataa taacctatag cacatgtacg attattgcta
     8341 aggaaaacca agaggttatt caagaatttc tgcaaaacca tcccaatttt gaacaggtga
     8401 cactagaaca ccctcaaaca gatattatgg tggatggctg cttgttgata acccctgaac
     8461 agtataagac agatggattt ttcatcggtc aacttagacg aaaatcctag aataagagga
     8521 ggaagttgct tagcaacgat aaaaattatg gaaattgcat tacttactga tgtaggacag
     8581 aaacgttcga acaaccaaga ctatatcaat cgctacaaaa accgcgcagg gattgatttg
     8641 gtcgtgttag ctgatggaat gggtggtcac cgtgccggcc atattgctag tgaaatggca
     8701 gcaacagatt tgggagctgc ttgggtcgat actcaattag tgaccttaaa tgatgtccgt
     8761 gaatggatgg ttgcaatcat tgatgctgaa aaccaaaaga ttcatgaact tggacagaca
     8821 gaagaataca aggggatggg aacaactctt gaagcagttg ttgtcatcga caaccaaatg
     8881 atctatgccc atgttggaga ttcacgagtt ggattgatta gagatggcga atatacacgt
     8941 ctaaccaacg accattcgct ggtaggtgcc cttgttcgag ctggtcagct cacagaagaa
     9001 gaagcacagc gtcatcctca aaaaaatatt gtaactcagt ccattggaca agccgaacca
     9061 attgaaccag acattgcttt gaaaactctt gaggttggag attatgtcct tattaacagc
     9121 gatggcttaa ccaatatggt accaaccgag gacattcgtg atattgtatt gagtgatgtt
     9181 tcaattgaaa gcaaggtaga aacacttgta cgttttgcca ataatgcagg cggtctagat
     9241 aatattacag taggtttgct tcacattacg gaggaggcta ggtaatgatt caaatcggta
     9301 agatctttgc cggtcggtat cgaatcgttc ggcaaattgg tcgaggcggt atggcagatg
     9361 tttacctagc aagagatttg attttagatg gagaagaggt tgctgttaaa gttcttcgga
     9421 ccaactatca gacagatcaa attgctatcc agcgttttca acgtgaagcg cgtgccatgg
     9481 cagaacttga ccatcccaat atcgttcgta tttcggacat cggtgaagaa gatggtcaac
     9541 agtatctggc tatggaatat gtcaatggcc ttgatttaaa acgttatata aaagaaaatg
     9601 caccactctc caacgatgtt gcggtgcgaa ttatgggaca gattctcctt gctatgcgaa
     9661 tggcgcacac gagaggaatt gtccatcgag atttgaaacc tcagaatgtc cttttgactt
     9721 ccaatggagt cgctaaagta acagactttg gtattgcagt tgcctttgct gaaacgagtt
     9781 tgacacaaac caactccatg ttggggtctg ttcactatct ttcacctgag caggcgcgtg
     9841 gttcgaaagc gaccattcaa agtgacattt atgcgatggg gattatcctt tttgaaatgt
     9901 tgacgggtcg cattccctat gatggagaca gtgctgtgac gatcgctctt cagcatttcc
     9961 aaaaacctct cccatctgtt agagaagaga atgccaacgt acctcaggct ttagaaaatg
    10021 ttgtactaaa agcaacggct aaaaaattaa acgagcgcta taagtcggtt gcagaaatgt
    10081 acgcagattt agcttcggct ctatccatgg accgtcggaa tgaacccagg gttgaactag
    10141 aagggaacaa ggttgataca aaaaccttgc cgaaactctc tcaagccaat gttgaaacga
    10201 aagtaccgca tacaaatagt tccgcccaag tttctgcgac agataagagc cctggtaaga
    10261 aagaagtggc gaagtcggga aataagcctg tttcaaaacc aaggccaggt atgcgtacac
    10321 gctacaaagt cttgatagga gctattttgt taacagtcat agcgactgga ctcatgtttt
    10381 tcaacactcc acgaacagtt acagtccctg atgtatctgg tcaaaccgtt gaaaaagcta
    10441 cagaaatgat tgaagtggca ggattggaag ttggaaatat cacagaagaa gcgacagcga
    10501 ctgtagatga aggcttggta atacggacct ctccggctgc aaagacgacc agacgtcaag
    10561 ggagtaagat tgatattgta gtagcaacgg ctgcgctggc atctattcca gatgtggtgg
    10621 ataaggagtc tgatactgca cggcaggaat tggaggccct tggtttccaa gtgacaataa
    10681 aagaagaata tagcgaaaaa gttgcccaag gactcgttat caaaacagat ccaggagcaa
    10741 atagttctgc tgagaagggt gcaaaaatta ccctttacgt ttccaaagga gtggcgccac
    10801 aagttgttcc aaacgttgtt ggaaaaagtc aggagaatgc tactcaaatt cttcagacag
    10861 caggcttcag cattggaacc attactcagg aatatagctc atctgttact gcaggtcagg
    10921 ttatcagcac agatcccgtt gccaatacag agttggcaaa aggttctatc atcaatctag
    10981 ttatttcaaa aggaaaagaa ttgattatgc ctgatttaac atctcgcaat tacacctatt
    11041 cacaggcgcg tagtcaatta caagccttgg gtgtcaatgc ggaaagtatt gaaaaacaag
    11101 aagatagaag ctattattca acgacaagtg acatcgtcat tggacaatat cctgctgctg
    11161 gagcaacaat tgatggaaca gttaccttgt atgtctccgt tgcatcaacc agaaccagta
    11221 gcgattcttc aacaggaagt tccacaagca caagtacttc aacagatagc ggacaataaa
    11281 gatgaataag gttgggcaga tgccgaacct ttttctcttg attagagagc gtagcttgtg
    11341 cgcggtcccc tatgccaaaa ttgtttcctt ctgtccatca agagtgatgg cctaggagtg
    11401 atttgcatag tttatagtca tgtttagttt attttgcttg cttcgttaat ttactttgcc
    11461 gtacccaagt acagcctgca tctcgttgct ttgaactaat atttcctact ttggatggag
    11521 ttcttttact tattttttgt tacaatagta tagaaaggat ggagaagatg cggaaagttc
    11581 aattttttct actaatagaa agtatgattt ttacgatggc agcctttgac gtggtagcca
    11641 atgaggccag tcggaccctg ctacttttct ctgccttatt actcgtcatt tggtacttcc
    11701 taggaagaaa agtcaacagt gttttactgg tcagctcctt atctctatta tttttggtct
    11761 ttgttttaaa tcccttcttc attattggga ttatgctact agtcgtgtac atgctgatta
    11821 atttcttttc acgttatgaa aagagaaacc aatataccca cattgttttt agtgactatt
    11881 ctctacaggt tcaaaaagag aaaaatagat ggtttggcaa ccacgaccac tctcaagata
    11941 ggtttggttt tgaagatatt aacattgtac gcttgtttgg caatgatgta gttgatttgg
    12001 ataagactgt attagttggc agagataata ttgttgtaat tcgtaaaacg tttggacgga
    12061 caaaaattat tgttccaatt gatgttgagg tcgcactttc agcaactagt atctatggac
    12121 gagtaagttt cctgggtgaa tcatactggg atttgcggaa tgaaagtata gcggtcaata
    12181 gttccgatta tcaagaatca cacaaacgtg taaaagtcgt tactaataat atactgggag
    12241 atgtggaggt ggttcgcgta tgagaaaacg tacctaccta ctcctcgcct ggtttgcctg
    12301 tcttattgtt tttgtggtga ttgcttccac cctcccactt ttaaattatt cattgttaga
    12361 tgttacgctc tggatttcaa cggagcagct cgtgtttact ctcattctac tagttattgt
    12421 tttgaccctt tttctagctg taatggtaca aactgtcagc ctagcctcca ctcaggttat
    12481 gcggacgaag ttacaagcta tcttgaagaa taaaagtatt cgaacagata ccgaaagtga
    12541 tcagctcttg ctccagttgt ctgataaggt cagaaacctc acgcgtcagg tgcagctggt
    12601 tgacaatcaa gatttagtca agaaagaaga gattgttgag ggagaacgga aacggattgc
    12661 cagggatttg catgatacgg ttagtcaaga gttatttgca acgagcatga ttttgtcagg
    12721 attatcgtcc aatctatcca ctcttccgca ggaaactttg caggaacagc tgatgctcgt
    12781 gaaagacatg attgagtctg cccaaagaga cctacgcatc ctattattac atctacgccc
    12841 aagtgaactt gaaagtaaaa ccttggttga aggatttgag ctgattttgc gtgaagttag
    12901 cgacaaaagt aatattatcg ttcatttcca acatgaagta gaggagttac cgaaactaat
    12961 tgaagaacat ctcttccgca ttgcgcaaga aattatcagt aataccttgc gacatgccaa
    13021 agccaagcat ttggatgttt acctcttgca gaaggaaaca gaacttcagt tgaaaatgac
    13081 agacgatggt atcggcttcc aacaaggggc agatgatgaa ttaagttacg gtcttcaaaa
    13141 catacgtgag cgggttgaag acatggctgg aacgataaaa attcgcactg ctccaaataa
    13201 gggagtggcg attgatattc gtatcccact attgaaagga aaagaagatg aatacgattc
    13261 gagtgatgct ggttgacgac catgagatgg ttcgtctagg attgaaaagt tacttaaatt
    13321 tacagccaga tgttgaagta gttgcagaag ctagtgatgg cgaggaaggt ttggctaaag
    13381 cattagaggt taaacccgat gttgtagtga tggacttggt tatgcctaag atgactggcg
    13441 tagaagcaac cctggccttg ctgaaggaat ggccgcaagc gcagattgtc atcctgacct
    13501 cctacctaga taatgagaaa atctatcctg tgctggaagc aggagctcgt ggctatatgt
    13561 tgaaaacgtc aagtgctgac gaaatcttag ccgctatccg caaggtagct cttggagaat
    13621 atgctattga gacagaagta gagaaaaaag tagagcacca taaacgccac ccagatttac
    13681 atgatgactt gacagctcgt gaacgcgaaa tcttgacgct gttagccaag ggatatgata
    13741 atcaacgaat tgcagatgag tctttcattt ccctaaaaac tgttaagacc catgtttcca
    13801 atatcttatc caaactagct gttagcgatc gtactcaagc agttgtttat gctttccagc
    13861 atggtttggt ggcgcaagag gaccaatagt ggtataatga aaattagtta attttcaacc
    13921 aaaggatagt ggaattatat ggatgcaaaa ctcagatata aggcaaaaaa aataaaaata
    13981 gtcttttttg acattgacga cacgctacgt gtaaagaata caggctacat tcctgaatcc
    14041 attcagcagg ttttcaactc actgaaagaa aagggaattt tgacaggaat tgcgtcagga
    14101 cgaacgcctt atggtttggt gccagaaatc aaggccttaa agccagactt tttcgctatg
    14161 attaacggct cctacgtaga agatgccaaa ggtcaggtag tgtaccatca gccaatgccc
    14221 caaaatatag tagaatctgt attaaattgg gctaaagaaa ttggaatcga atatggtatg
    14281 cttggtagtc aaaaagggac actttctgca cgaactgacc gcattagtca agtaattgac
    14341 ttgatttatg aaggtttgga aataaaccca actttttata aagaaaatga catctatcaa
    14401 ttgttaactt tcgagaaaga tggtcacgaa gtagaacttc cagaagagtt gcaagcggaa
    14461 ttgcgtagtg ttcgttggga tgctatttca tcggacattg tgttaaaagg ctcttccaaa
    14521 gcaactggtg ttgctaaggt tgttgaaaaa ctaggcctga aacctgaaaa tgtcctagtg
    14581 ttcggagatg gactcaacga tattgagtta ttcgattatg caggaattag tatcgctatg
    14641 gggcattcgc atccagaact gcaaaagcat gcagattata tcacaaaaaa agtagaagaa
    14701 gatggcattt ttgatgcctt ggagaaatta ggtatggtag aaaaagaaaa atatttcccg
    14761 caattagatt tggaaaatgt tacaggacca gttgcgcata tcaagactaa ccatggtaag
    14821 ttaacagtaa aactctttcc tgaaattgca cccaaaactg tagcaaattt cgtagctctt
    14881 tctaaagatg gctattatga cgggattatc tttcatcgta ttatcaaaga ctttatgatt
    14941 caaggtggcg atccaaccgg aacaggtatg ggtggtgaat ctatttatgg tactgcgttt
    15001 gaagatgaat tttcaatgga agcttttaat ctcagaggag ccttgtcaat ggccaatgca
    15061 ggaccaaata caaatggaag ccaattcttt atcgttcaaa accaaaattt cccatacaat
    15121 gcgaaagaat tagaacgagg cggttggcct aaagaagttg cagaagccta tgtcaaaaat
    15181 ggcgggacac cacatctgga tcaacgccac acagtgtttg gtcatctagt tgatgaagaa
    15241 tccttcgtcg tcttggatgc tatcgcagcg gttgcaacag attcagcaga tcgtccacat
    15301 gaagatgttg taattgagac catcgaaata gaggattaag atgaaaatcg gagataaact
    15361 caaggggacg gtaacgggta ttcaaccgta tggagccttt gtacaattag agaatgggac
    15421 gacgggccta atccatatct cggaaatcaa aacaggtttt gttgataata tttatgatca
    15481 tttaaaattg gggcaagagg ttttggtaca ggtagttgac tttgatgaat atactgaaaa
    15541 ggctagttta tcaatccgga ccttggaaga agaacaacaa aaaattccgc gtcatcatcg
    15601 ttttacaaat gaacggaata aaattggttt ttccccttta gcaaaacaac ttccgaaatg
    15661 gattgaggaa gctaaaggct atctcaaaga acacaaagaa aagaaggtat aggatgcatt
    15721 cctaaccttc tttctttttt aatcattgaa ctcataaaga gctgttgaca agtaacgttc
    15781 tccgttatca ggtaagattg ccaacacttt ttttccagtt cccaactcct tagcgacttc
    15841 gatagcagcg tgaattgctg cacctgaaga aataccaact aagaatcctt cttttccacc
    15901 gatagcacga cctgtagcta aggcatcatc ggatttgaca cgaataatgc catcataggc
    15961 gctagtgtcc aaagtatctg gaataaaacc tgccgaaata ccttggatct tgtgcggacc
    16021 aggtgcttca ccagataaga cagctgattc atcagcttcg acagcataga tagcaatatc
    16081 tggatttgct gtcttcaaaa catgcgaaac acctgaaacg gtaccaccag taccaacgcc
    16141 agatacaaag gcatctaaac cagttgttcc aaagtcttcc aaaatttcct gtcctgttgt
    16201 atcttcgtga acttttggat tggatggatt agcaaactgg aaaggaaccc agccattttt
    16261 ttcttcagca atctcttttg ctttggcgat agcccccttc atcccttcgc taccaggagt
    16321 caagacaagc tcagctccat aagcttggat aatcttacga cgctcaacac tcatagtttc
    16381 aggcatgacg ataatcacct tataaccttt tgctgctcca acccaagcaa gaccgatacc
    16441 agtgttacca cttgttggct caacaatagt atctccaggt ttgattgtac cagccttctc
    16501 agcatcttca atcatagcca aggcgatccg gtcttttaca gaagatcctg ggttaaaggc
    16561 ctctaatttc acatagactt ccgctgcccc ctctggaacg atattattga gtttaataac
    16621 aggtgttttt ccaactaatt gagtaatgtt ttgataaata gccatatggc acctccaaat
    16681 aatgttatta tacattatat agtagaaagt caaaaaagga taatataaaa aaactatctc
    16741 gccgatagct ttttttaata gacaggtacc tcaacgattc gagagttagc tttttccgcg
    16801 gatacttttc cgtggtaaaa gtcagtgaga cttgctaagg tttgttcaag gaattcttta
    16861 tctacaaaaa tcatggttga aacttcagta gtaaactggg catcaaattc ttccagacct
    16921 tgctcagctc gccaattggc aaactcttgg tattgggtat aggacatgct aatggaaatc
    16981 ccttcctgct ccttaacctc cacaaccccg atttccttga ctgcattagc cacgactcca
    17041 gcgtaagcac gaataagtcc gcctgccccg agtttgatac ctccaaaata gcgggtaacc
    17101 accgttgcga cattggtcag ttcgtgattt tctaaaaccg tcagcattgg cacaccagca
    17161 gtaccagacg gctccccatc atctgaggaa cgcttgattt ccatattttc tccaaggaca
    17221 aaagcagagc agttatgagt agccttgtaa tgttctttct tgattttgtt gataaagtcg
    17281 cgagcttcct cctcgctggt cactcgtttc ataaagcaga taaatcgtga ctttttaatt
    17341 tcttcctcaa caataccatc ttctctaatt gtttta
//
LOCUS       DASGBY010000033        17365 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.033, whole genome shotgun sequence.
ACCESSION   DASGBY010000033 DASGBY010000000
VERSION     DASGBY010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17365
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.033"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(79..1299)
                     /gene="pepT"
                     /locus_tag="U1396_000833"
     CDS             complement(79..1299)
                     /gene="pepT"
                     /locus_tag="U1396_000833"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEM5342036.1"
                     /translation="MKYPTLLDRFLVYVKENTRSDENSTTTPSTQNQVEFAQNILLPE
                     MKRIGLQNVHYLPNGFAVGTLPANDPSLTRKIGFIAHMDTADFNAEGVNPQIIENYDG
                     NPIALGTSGYELHPKDFPQLANYHGQTLITTDGTTLLGSDDKSGIAEIMTAIEFLVQN
                     PDIKHCEIRVGFGPDEEIGVGADKFDVEDFDVDFAYTMDGGPLGELQYETFSAAGAKI
                     DFLGRNVHPGSAKDQMINAFQMAIDFHNALPEADRPEKTEGYEGFFHLMNMEGSVDTA
                     STTYIIRDFEEEDFLARKQLMLDIAEKMNAKFDTPRVIVNLHDQYYNMKKIIEKDMTP
                     INIAKDVMENLGIKPLIEPVRGGTDGSKISFMGIPTPNIFAGGENMHGRFEFVSLETM
                     EKAVDVILGIVAYK"
     gene            complement(1309..2124)
                     /locus_tag="U1396_000834"
     CDS             complement(1309..2124)
                     /locus_tag="U1396_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5342037.1"
                     /translation="MIKLIALDMDGTLLNEKKELMQPQIDAIHQAVEAGVKIVLCTGR
                     PLAGVKPFVEQLGFDTEEEFIIVNNGCSTHSTKDWSLIDWEELSISDIDYLSTFIEND
                     DVQISLFDEEDYFVLAEKANARVNLDAGLVGMTPQPIVLKEAQSGQHRFFEAMFVGEK
                     EHIDAFENQHNPVLSQHYSTVRSQDYLLEILPNGASKASGLKKLADRLGILPEEIMAM
                     GDANNDLEMIEFAGLGIAMGNANEQVKAIAQDITDTNENNGVAKAIEKHILNK"
     gene            2506..2976
                     /locus_tag="U1396_000835"
     CDS             2506..2976
                     /locus_tag="U1396_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEM5342038.1"
                     /translation="MKISVKKEAGHYLLSICYSVSASLTEAWDLLATDSGFAHWFPQL
                     NIVGNTLVFEMEGFREVMDLLEYRKNEKIAYRWDSATVSFTLSQLENQTLITFEERIP
                     EDFGNEFANAQKDMTGWLVPNECIKKFLEGQEPPVCQPLQEKWRTFLELELEGL"
     gene            2994..3251
                     /locus_tag="U1396_000836"
     CDS             2994..3251
                     /locus_tag="U1396_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342039.1"
                     /translation="MKKWWEQLKEEYYETRFDSNEDWMEWFIKRKMTWGWRWPTAITI
                     FVLWALSLPDARNVVRFFYFLLTLGVATVLHKLISYLKRRK"
     gene            3258..4511
                     /locus_tag="U1396_000837"
     CDS             3258..4511
                     /locus_tag="U1396_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEM5342040.1"
                     /translation="MHQITCPHCGTAFQVNETEYSQLLAQVRGAEFDKEIHDRLERER
                     ELLSQKAENDLQARLSDKDKEILELTAKLDKFASQTELEISSAISQKDQEIQELKAQL
                     GQIGLAKDLELQQAVAQVEKERDAAQNALVLQEQKQELALATTRQEYEVRLKAADEQV
                     EFYKNFKAQQSTKAIGESLEQFAEAEFNKVRSYAFPHAKFAKDNEVSASGSKGDFIFR
                     DFDESGLEFISIMFEMKNEADTTKTKHKNADFFKELDKDRREKKCEYAVLVSMLEADN
                     DYYNTGIVDVSHEYEKMYVIRPQFFIQLIGILRNAALNSLQYQQELALVKEQNIDITH
                     FEEDLEIFKNAFAKNYQSASNNFQKAIDEIDKAIKRMEAVKAALTTSENQLRLANNKL
                     DDVSVKKLTRNNPTMKAKFEALREE"
     gene            4513..5007
                     /locus_tag="U1396_000838"
     CDS             4513..5007
                     /locus_tag="U1396_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342041.1"
                     /translation="MIVPLQFEHILQLDEAFQKQGWPSSKEILTNYLREQEKGERIVL
                     VAEETGVCKGYITLIKQVKEGPFYQSGIPEIADFNVFEDFQNQGIGWQLLDAICQLAS
                     EFTDIVGIGVGLNANYGKAQRLYVKHGFIPDGSGVWYRGRSLPVGAKAYNDDELALYF
                     TKKL"
     gene            5020..5250
                     /locus_tag="U1396_000839"
     CDS             5020..5250
                     /locus_tag="U1396_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1858 domain-containing protein"
                     /protein_id="HEM5342042.1"
                     /translation="MNTIDLNLPVAEIINQHPEVKDILVELGFKPLANPAMLNTVGKV
                     TNLKTGSKMTKIPLDRIQQVLECNGYEVIGGE"
     gene            5250..6575
                     /locus_tag="U1396_000840"
     CDS             5250..6575
                     /locus_tag="U1396_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF438 domain-containing protein"
                     /protein_id="HEM5342043.1"
                     /translation="MTEQRIDILKNILLDLHNGASPESVQDQFNQHFTGVSALEISMM
                     EHELMSSDTGITFEDVMNLCNIHANLFKGAIADVEVADMDQEGHPVYVFKQENLALRA
                     ALLRIRRIIDQHEQTEDAELKDQLLQGLTRQFGLLGQFENHYTRKEKVFFPIMERYGH
                     DAPPKVMWGVDDEIRDLFKTARKALEGGDLAATRAHFENFAKEFEEMIFKEEAILLMI
                     LLEIFTQDDWLQVAADSDAYGYAIVKPTAKWVPHREVFGEIAEQEVDSISPQPASPNQ
                     QIIDTPEGQFTITFTPKEKSETVQDRTSPQTFGNGYLSVEQANLILNHLPLELTFVNK
                     DDIFQYYNDSHPVEDMIFKRTPSQIGRHVELCHPPKIVDKVKKIFELLRTGQKDQVTM
                     WFKSESMGKFVYVVYKAVRDDQGEFQGVLEYVQDIQPFFEIDSDFHREI"
     gene            6606..6815
                     /locus_tag="U1396_000841"
     CDS             6606..6815
                     /locus_tag="U1396_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342044.1"
                     /translation="MDWPTIKIGDEGYYDAPLIFSYGYDEEAEEGIDEAVTFDAVPSE
                     TMRRIHKELENLIDTTFGSYRFYDD"
     gene            6868..7743
                     /gene="truB"
                     /locus_tag="U1396_000842"
     CDS             6868..7743
                     /gene="truB"
                     /locus_tag="U1396_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEM5342045.1"
                     /translation="MSGIINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGV
                     LPIAVGKATRMIEYMQEEGKIYEGEITLGFSTTTEDSSGDLVERTPVLDIAEQAVDEA
                     MTSFVGTITQIPPMYSAVKVNGRKLYEYARTGEEVERPQRQIEIYSFERTSPIELVDD
                     CARFTFRVRCGKGTYVRTLSVDLGAKLGYASHMSKLERTGSAGMDLADALTLEEISSL
                     VAENDFSFLQPIERGIGDLPVVELKEEQVQDATFGRFVELNAEAERLAGFHDGQLIAI
                     FEKRDQLYKPSKVLV"
     gene            7778..8701
                     /locus_tag="U1396_000843"
     CDS             7778..8701
                     /locus_tag="U1396_000843"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEM5342046.1"
                     /translation="MNIRTIKHYSELNQEEPTVLVLGYFDGIHLGHKALLDRARQVAD
                     EKGLSVTVLTFPETPRLAFSRFSPELLLHLTSQDQRYHLLEQYGVDQLVLTDFTSEFA
                     SNTPQQFLERYIKGLNAQVLVAGFDYHFGNCRADVTDLTELFDGQVEIVSEVSLGGEK
                     VSSTRIRQAIQSGEVSLANQLLGYPFMTEGIVVHGDARGRTIGYPTANLAPFDRVHLP
                     SEGVYVADVEVDGKRYRAMTSVGKNVTFDGTEMRIEAHIFGFHRFIYGEKITIFWLEK
                     IRDMVKFDGIEGLMEQMKSDEKFALQWGKYA"
     gene            8694..9440
                     /locus_tag="U1396_000844"
     CDS             8694..9440
                     /locus_tag="U1396_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEM5342047.1"
                     /translation="MLKRLIRHPFYEKAMTYIAVVYVFLIVLELMDASIANSSGYRVL
                     DLLLWFIFVCDYFAQLYYADDILEYVQGHILELIAIIPFDSFFSFLRLGRLARLFRLV
                     KVTRIFALSNRFWDTINKLLHTNSLSKVLMLNISAVLVSSVLLSVIEGKSFFDALWWS
                     IVTMTTVGYGDIVPQDTISKIIAILLMLVGICTFGMVTSTITRFFSETERETKLDILM
                     AKIDEQNETLLRLEKKIESLEKLGELQGRD"
     gene            9515..9916
                     /locus_tag="U1396_000845"
     CDS             9515..9916
                     /locus_tag="U1396_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HEM5342048.1"
                     /translation="MVTLFLSPSCTSCRKARAWLTSHEVPFIEHNIMTSPLTAEELKN
                     ILALTENGTDDLISTRSKVFQKLDIDVDELSVKQLIGLIETYPSLLRRPIILDEKRMQ
                     IGFNEDEIRAFLPRKYRKQELKNATLRAEIG"
     gene            9931..10209
                     /locus_tag="U1396_000846"
     CDS             9931..10209
                     /locus_tag="U1396_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HEM5342049.1"
                     /translation="MNKNYSYPLDFSWSTEEISSVLSFLNQVEAAYEKGADAVAILAS
                     YKSFKDVVKSKGQERQIDRDFEAVSGYSTYRVVKAARDKGKGVIRFGN"
     gene            10199..10957
                     /locus_tag="U1396_000847"
     CDS             10199..10957
                     /locus_tag="U1396_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEM5342050.1"
                     /translation="METKYHFAQTIVLEAGNFLRQHLHDDLQIEEKGDFTDLVTHLDK
                     QVQEMLTQQIQSRYQGDGILGEEGGDVSSIHEGNVWVIDPIDGTTNFIAQKTDFAIMI
                     AYFENGVGKFGIIYDVMRDKLFHGGDSFPVYCNQERLKKPELRPLRQSLIGINAKLYA
                     GNAHGVAELANQSLGTRSVGSAGIGFTHVLEGRLFAYASYLCPWDYAAASIIGSSLGL
                     VMLSFEGPSLTYDKREFVMLVSESHLKEVKGYIF"
     gene            10957..12258
                     /locus_tag="U1396_000848"
     CDS             10957..12258
                     /locus_tag="U1396_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmF rRNA methyltransferase first C-terminal
                     domain-containing protein"
                     /protein_id="HEM5342051.1"
                     /translation="MQLPQDFIDKYNHLLGSEAQAFFESFEQDPISGFRTNPLKESQL
                     DFEQPIPNMTWSYYGKVSGKSPEHVTGLVYSQEPAAQVVGQIAAPEKGMKVLDLAAAP
                     GGKSTHLLSYLENTGLLVSNEISNKRAKILAENIERFGARNVVVTNESADRLAKVFPG
                     YFDMIVLDAPCSGEGMFRKDPDAIQYWSKHYPAQCASLQREILESALNMLAPGGQLIY
                     STCTWSPEENEEVVTWLLEQYDLELIDIPKINGMVEGVGYPEVARMYPHHFAGEGQFV
                     AKFRFLGEVSQKKLKPGKSNLNREQQALWKEFEQKHLRVQLDGLLQVFGDNLYLLPHG
                     LPDLSKVKIARNGLHLGTYKKKRFEPSFALGLALHSSEVENRVEISLEEFSSYTAGHT
                     IAVSKDLANGWYQVAVQGNGLGFAKIVSGTLKNGFPKGLRF"
     gene            12395..13264
                     /locus_tag="U1396_000849"
     CDS             12395..13264
                     /locus_tag="U1396_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS family protein"
                     /protein_id="HEM5342052.1"
                     /translation="MKKKQKLGIAALFLLSSMALSGCSSWIDRGESITAVGSTALQPL
                     VEAAADEFGSVNIGKSVNVQGGGSGTGLSQVQSGAVQIGNSDVFAEEKDGIDASKLVD
                     HQVAVAGLAVIVNEQVSVKDITTEDLRKIFTGEITNWKELGGKDLEISIINRAASSGS
                     RATFDSVIMDGQTATQSQEQDSNGMVKSIVAQTPGAISYLSFAYLDDSVKTIKLNGFE
                     PTAENVATNDWPIWSYEHMYTMGKATDLTEEFLDYMMSDEVQNGIVESMGYISINDMK
                     VVKSADGTVTEKE"
     gene            13267..14184
                     /gene="pstC"
                     /locus_tag="U1396_000850"
     CDS             13267..14184
                     /gene="pstC"
                     /locus_tag="U1396_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEM5342053.1"
                     /translation="MKNEQLAKELSSPSKNSRLEKFGKVITFLCLSLIVFIVAMILIF
                     VAQRGLSTFFVDGVSITDFLFGSKWEPSSKIFGALPMISGSFIVTILSAVVATPIAIG
                     AAVFMTEISPKRGAKILQPVIELLVGIPSVVYGFIGLQVVVPFVRSIFGGTGFGILSG
                     VFVLFVMILPTVTFMTVDSLRAVPRHYREASLAMGATRWQTIWRVILNAAKPGIFTAV
                     IFGMARAFGEALAIQMVVGNSAVIPTSLTTPAATLTSVLTMGIGNTVMGTVQNNVLWS
                     LALVLLLMSLIFNMIMKFITREGKKNYAR"
     gene            14174..15061
                     /gene="pstA"
                     /locus_tag="U1396_000851"
     CDS             14174..15061
                     /gene="pstA"
                     /locus_tag="U1396_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019316415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEM5342054.1"
                     /translation="MHAKKFDKLATGILYSIAGVIVVILTSLILYILLRGLPHVSWDF
                     LTSKSSSYKAGGGIGIQLYNSFFLLVVTLLISVPLSTGAGIYLAEYAKKGPLTNFIRT
                     CIEILSSLPSVVVGLFGYLIFVVQFEYGFSILSGALALTVFNLPQMTRNVEDSLRHVH
                     HTQREAGLALGLSRWETVLHVVIPEALPGIVTGIVLASGRIFGEAAALIYTAGQSAPA
                     LDWSNWNPLSVTSPISIFRQSETLAVHIWKVNSEGTIPDATQVSAGSAAILLVFILIF
                     NLSARYIGKKLHAKLTSAA"
     gene            15086..15889
                     /gene="pstB"
                     /locus_tag="U1396_000852"
     CDS             15086..15889
                     /gene="pstB"
                     /locus_tag="U1396_000852"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM5342055.1"
                     /translation="MADYNWNERHIITFSEENIALSTKDVHVYYGKNEAIKGIDMQFE
                     KNKITALIGPSGCGKSTYLRSLNRMNDTIDIAKVTGQILYEGIDINRPDMNVYEIRKH
                     IGMVFQRPNPFAKSIYRNITFAHERAGVKDKQVLDEIVETSLKQAALWDQVKDDLHKS
                     AFTLSGGQQQRLCIARAISVKPQILLMDEPASALDPIATMQLEETMFELKKDYTIIIV
                     THNMQQAARASDYTAFFYLGDLIEYDKTANVFQNAKLKSTSDYVSGHFG"
     gene            15901..16659
                     /gene="pstB"
                     /locus_tag="U1396_000853"
     CDS             15901..16659
                     /gene="pstB"
                     /locus_tag="U1396_000853"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM5342056.1"
                     /translation="MTSPILQVKDLSVYYNKKKALNNVSIDFYPNEITALIGPSGSGK
                     STLLRSINRMGDLNPEVTLTGAIDYNGKNIYSPRTDTVDLRKEIGMVFQQPNPFPMSI
                     YENVVYGLRINGIKDKQVLDEAVERSLIGASIWNEVKDRLHDSAVGLSGGQQQRVCVA
                     RVLATSPKIILLDEPTSALDPISAGKIEDTLYGLKDKYTMVLVTRSMQQASRISDRTG
                     FFLDGDLIEYNLTKEMFLNPANKETEDYITGKFG"
     gene            16688..17344
                     /gene="phoU"
                     /locus_tag="U1396_000854"
     CDS             16688..17344
                     /gene="phoU"
                     /locus_tag="U1396_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000946475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEM5342057.1"
                     /translation="MLRAQFEEELGKLHNQFYAMGNEVLAQINNAVRAFTTHDRELAK
                     EVIEADKKINAFEVKLEKKSLEIIALQQPVSTDLRRVITVLKATSDLERMGDHAVSVA
                     KAAIRMKGEVRIPVVEEEIKKMGREVCQLVEETLELYLGDADMERAYEVAARDEVVNE
                     FYSTIQELTTEEIKKNPESLVAGRDYYQVLTYLERVGDYAKNICEWVVYLRTGDITEL
                     "
BASE COUNT         5088 a         3192 c         4058 g         5027 t
ORIGIN      
        1 aacgacacaa tataaaattg cattttttta aaattttttc agaaaaaaac gactttctat
       61 tgaaagccgt ttgaaatttt atttgtaagc gacgattcca aggatgacat caacagcttt
      121 ttccatggtt tccaagctga cgaactcgaa gcgaccgtgc atgttttcgc cacctgcgaa
      181 gatatttggt gttggaatgc ccatgaagga aatcttagag ccgtctgttc ctccgcgaac
      241 aggctcaatc agtggcttga tgcctagatt ttccatgacg tctttggcaa tgttgattgg
      301 agtcatatct ttttcgatga tttttttcat gttgtagtat tggtcgtgca ggttgacaat
      361 gacgcggggt gtgtcaaact tggcattcat tttctctgca atatccagca tgagctgttt
      421 gcgggcaagg aaatcttctt cctcgaagtc acggatgatg taggtggtag aagcagtatc
      481 aacactacct tccatattca tcaaatggaa gaaaccttca tagccttctg ttttctcagg
      541 gcggtctgct tctggaaggg cattgtggaa atcaatagcc atttggaagg cattgatcat
      601 ctggtcctta gcagatcctg ggtggacatt gcgtcctagg aaatcaatct tggcaccagc
      661 tgctgagaag gtttcgtact ggagttcgcc cagcggtcca ccgtccatgg tgtaggcaaa
      721 gtccacatcg aagtcttcca catcaaactt gtctgctccg acaccgattt cttcgtcagg
      781 accaaagccg acacggattt cacagtgttt gatgtcagga ttttggacta ggaattcaat
      841 cgcagtcatg atttctgcaa ttcctgactt gtcatcagag cctagcaagg tagtaccgtc
      901 agtggtaatc aaggtttgac cgtggtagtt ggcaagttgt gggaagtctt ttggatgcaa
      961 ttcatagcca gaagttccca aggcaattgg gttaccgtcg tagttttcga tgatctgcgg
     1021 attgacacct tcagcgttga aatcagccgt atccatgtgg gcgatgaagc caatcttacg
     1081 tgtcaaactt gggtcgttgg caggcagtgt tcccacagca aagccgtttg gtaggtagtg
     1141 gacattctgt aagccgatgc gtttcatttc aggcagaagg atattctgtg caaattcgac
     1201 ttggttttgg gtagaaggtg tggtggtcga attttcatct gagcgagtat tttctttgac
     1261 atagactaaa aaacggtcta agagagttgg gtatttcata gtatctcctt atttgttcaa
     1321 aatgtgtttt tcaatggctt tggcaacgcc gttgttttca ttggtgtctg tgatgtcctg
     1381 ggcgatagcc ttgacctgct cgttggcgtt gcccatggca ataccaagtc cagcaaattc
     1441 aatcatttcc aggtcgttgt tggcatctcc catagccatg atttcttctg ggaggatacc
     1501 gaggcggtct gccagttttt tcaaaccaga ggccttgctt gcaccgtttg gtaaaatttc
     1561 caagagatag tcctgtgaac gaacggtgga atagtgttgg ctgagtacag gattgtgttg
     1621 attttcaaag gcatcaatat gctctttttc accgacgaac atggcttcaa agaagcgatg
     1681 ctgacctgac tgggcttctt ttaaaacaat tggttgagga gtcattccta ctaaacctgc
     1741 gtctaaatta acgcgtgcat tggctttttc tgcaagaacg aagtagtctt cctcatcaaa
     1801 aagagagatt tgcacatcat cattttcaat aaaagtggaa agataatcaa tatcagagat
     1861 agatagttct tcccagtcaa tcaggctcca atcctttgtc gaatgcgttg aacaaccgtt
     1921 attgacaatg ataaattctt cctcagtgtc aaagccgagc tgctctacga aaggtttaac
     1981 accagccaag ggccgaccag tacaaagaac aatcttgacg cccgcttcaa cagcctgatg
     2041 aatggcatca atctgtggct gcatcagctc ttttttctcg tttaaaaggg ttccgtccat
     2101 atcaagagcg attagtttaa tcatataaac ctccttgttt tcaatacatc tagtatagca
     2161 caaaatgaga aaggaatgat tgaaatacta aactctgttc tatatgttaa aataaattag
     2221 gtgacgaatg aaatatagaa gtgttgcaaa aatgacaatg tccattatgt gttaagaaag
     2281 tctaacattg ctaggggata caaaacatgg agtatgagcc aggtaaacaa aggtaaggac
     2341 tgtctatgaa agatgttata aaaaataatt cagatttcaa gataccgttt ttcgatcctc
     2401 tggaatgaat agcattcatg cttaaagaat agagacaatg gaaatatcgg ttatagaccg
     2461 gtgttttttg gtataattaa tagaaggata gaataggagc atgatatgaa gattagtgtg
     2521 aagaaagagg cggggcacta cctgctcagc atttgctatt ctgtgtcggc tagtttgaca
     2581 gaagcttggg acttgttggc gacagacagt ggttttgccc actggtttcc acagttgaac
     2641 attgtaggaa atacgctggt ttttgaaatg gaaggattcc gtgaagttat ggatttactg
     2701 gaatatcgaa aaaatgagaa aattgcctac aggtgggatt cagcaacagt ttcatttaca
     2761 ctgtctcagc tagaaaatca gaccttaatt acttttgaag aacgaattcc agaagatttt
     2821 ggtaatgaat ttgcgaatgc tcaaaaagac atgacaggat ggttggtgcc aaatgaatgt
     2881 atcaaaaaat tcttagaagg tcaggagccg cctgtgtgtc aacccttgca ggaaaagtgg
     2941 aggacttttc tggagcttga attagaaggt ctgtgatctg aaaggaggct gttatgaaaa
     3001 agtggtggga acaactgaaa gaagaatatt atgaaacacg gtttgattct aatgaagatt
     3061 ggatggaatg gtttatcaaa cggaagatga cctggggctg gagatggccg actgctataa
     3121 cgatttttgt cctttgggct ctatcacttc cagatgctag aaatgtggtt cgtttctttt
     3181 attttttatt gacgctggga gtagctacgg ttttacataa attaatatct tatttgaaaa
     3241 gaagaaagtg agagtatatg catcaaatta cttgccccca ttgtgggacg gcctttcagg
     3301 tcaatgaaac agaatatagt cagcttttag cccaggtgcg tggtgcggag tttgacaagg
     3361 aaatccacga ccgtttggag cgggaacggg aattattaag ccagaaggct gaaaatgatt
     3421 tgcaggctag attgagtgat aaggataagg agattctgga actgaccgca aaacttgata
     3481 aatttgctag tcagacggaa ctggaaatca gctctgctat ttcccaaaaa gaccaagaaa
     3541 tccaagagct taaggctcag ttggggcaaa tcggtcttgc caaggacttg gagttgcagc
     3601 aggcggtagc tcaggtggaa aaagagcggg atgcggcaca aaatgctttg gttttgcagg
     3661 aacaaaagca agagttagcc ctagcgacca ctcgtcagga gtacgaagta cggctcaagg
     3721 cggcggatga gcaggtggaa ttttacaaaa atttcaaggc ccagcagtct actaaggcaa
     3781 ttggagagag cttggagcaa tttgctgagg cggagtttaa caaggttcgt tcctatgctt
     3841 ttccacatgc caaatttgcg aaggacaacg aagtatcagc gtccggttca aaaggagact
     3901 tcatcttccg tgattttgac gagtcgggct tggaatttat ttccatcatg ttcgaaatga
     3961 aaaacgaggc agatacgacc aagaccaagc ataaaaacgc tgatttcttt aaggagttgg
     4021 ataaggaccg tcgggagaaa aaatgcgaat atgctgtatt agtcagcatg ctagaggcgg
     4081 acaatgacta ttacaataca gggattgtgg atgttagtca tgaatatgag aagatgtatg
     4141 ttattcgacc acagttcttt atccaattaa tcggaatttt acgaaatgct gcgctcaata
     4201 gtctgcaata tcagcaggag ttagccttgg ttaaggagca gaatattgat attactcatt
     4261 ttgaagaaga tttggaaatt ttcaagaatg cttttgccaa aaactatcaa tcggccagca
     4321 acaatttcca aaaagctatt gatgaaatcg ataaggcaat caagcgaatg gaggctgtca
     4381 aggcagccct gaccaccagc gaaaaccagc ttcgcctagc caataataaa ctagacgatg
     4441 tctccgtcaa aaaactaacc cgcaataacc caaccatgaa agccaagttt gaggcgttga
     4501 gggaggagta ggatgattgt tccgttacaa tttgagcata tacttcaact tgatgaggcc
     4561 ttccagaagc aaggttggcc ctcaagcaaa gagattttaa ccaactattt aagggaacaa
     4621 gaaaagggag aacgtatcgt cctagttgct gaagaaacgg gagtttgtaa aggttatatc
     4681 accttgatta agcaagtgaa ggaggggccg ttttaccaat ctggaatacc tgaaattgct
     4741 gatttcaatg tttttgaaga ctttcaaaat caggggatag gttggcaatt attagatgct
     4801 atctgtcagc ttgcctcaga attcacggat atagtaggta ttggagttgg tttgaatgca
     4861 aattatggaa aggctcaacg gctctatgta aaacatggtt tcataccaga cggaagcggt
     4921 gtctggtacc gagggcgctc tttgccagta ggtgccaaag cctataacga tgatgaattg
     4981 gccttgtatt ttacaaaaaa attatagagg aaaagtaaaa tgaacaccat cgacctaaat
     5041 ctgcctgttg cagagattat caaccagcac ccagaagtca aggatattct ggtggagctt
     5101 ggtttcaagc ctttggcaaa tccagctatg ctcaacacag ttggtaaggt gaccaatctg
     5161 aagacaggct ccaagatgac caagattccg ttagaccgta ttcaacaggt cttggaatgc
     5221 aacggctatg aggtaatagg aggagaataa tgacggaaca acggattgac attttgaaga
     5281 atattctctt ggacctgcac aatggtgcca gtccagagtc tgttcaggac cagtttaatc
     5341 agcatttcac gggagtttct gccttggaaa tctccatgat ggagcatgaa ctcatgtcca
     5401 gcgacacggg tatcactttt gaagacgtca tgaacctttg caatatccac gccaaccttt
     5461 tcaaaggagc cattgcggat gtggaagtgg cggatatgga tcaggaagga caccccgtct
     5521 atgtcttcaa gcaggaaaat ctagcactgc gggcggctct tttacgcatc cgacgtatca
     5581 ttgaccagca tgagcagaca gaggatgcgg agctgaaaga ccagctcctg caaggtttga
     5641 cacgccagtt tggcctcctc ggtcaatttg aaaatcacta tacccgcaag gaaaaggtct
     5701 tctttccgat tatggagcgg tacggtcatg atgcaccgcc caaggttatg tggggtgtgg
     5761 acgacgagat tcgcgatctc ttcaagacgg cccgcaaggc acttgaagga ggtgacctag
     5821 ctgcgacacg tgctcacttt gaaaacttcg ccaaggaatt tgaagagatg attttcaagg
     5881 aggaggccat tctcctcatg attctgctgg agattttcac ccaggacgac tggctccaag
     5941 tggcagcaga cagcgatgcc tacggctacg ccattgttaa gccgacagcc aagtgggtac
     6001 ctcatcggga ggtttttgga gaaatagcag agcaggaagt agatagcatt tctccgcagc
     6061 cagctagccc aaaccagcag attatcgaca cgccagaagg ccagtttacc attaccttta
     6121 cacccaagga aaagtcagaa actgttcagg acaggactag tccgcagacc ttcggcaatg
     6181 gttatttatc tgttgagcaa gccaatctta tcctcaatca tttaccgctg gaattaacct
     6241 ttgtcaacaa ggacgacatt ttccagtact acaatgacag ccatcctgtt gaagacatga
     6301 ttttcaaacg aacaccaagc cagattggac gccatgtgga gctctgccat cctcccaaaa
     6361 tagtggacaa ggtcaagaag atttttgaat tgctccgcac agggcaaaaa gaccaggtca
     6421 ccatgtggtt caagtccgag agcatgggca agtttgtcta tgtggtctat aaggcagtgc
     6481 gtgatgacca aggagagttt caaggcgttt tggagtatgt tcaggatatt caaccatttt
     6541 ttgagattga tagcgatttt catcgggaaa tttagtttag tcatttttga aaggaaatta
     6601 agctgttgga ttggccgacc ataaaaattg gtgacgaagg ctattatgat gccccattga
     6661 tattttctta tggctatgat gaagaggctg aggaagggat tgatgaagca gtaacattcg
     6721 atgcagtacc ttctgaaacc atgcgacgca ttcataagga actagagaat ttgatagata
     6781 caacattcgg tagctatcgt ttctatgatg actgattgat atcggaccgc ccacaagagc
     6841 ggtcctttgt gttataatgg aaaaatgatt tcaggaatta ttaacgtaaa aaaagaggca
     6901 ggtatgacct cgcatgatgt tgtttttaag ctccgcaaga ttttgcagga gaagaagatt
     6961 ggacatggtg ggaccttgga tcccgatgtg acaggcgttc tgcccatcgc agtcggtaag
     7021 gccacgcgta tgattgagta catgcaggaa gagggaaaga tttacgaggg ggagattacc
     7081 ctcggcttct caaccacgac cgaagattcg tcgggcgacc tcgtcgagcg gacaccggtt
     7141 ttggacatag cagagcaggc agttgatgag gctatgacca gtttcgtcgg tactattacc
     7201 cagattccgc ctatgtactc tgctgtcaaa gtaaacggtc gcaaactata cgaatacgca
     7261 cggacgggtg aagaagttga gcgtcctcaa cgccaaattg agatttacag ttttgaacgg
     7321 actagcccga ttgaactagt agatgactgt gcacgtttta ccttccgagt tcgctgtggt
     7381 aagggcacct atgtccgtac cctgtctgtt gacctagggg ctaagttggg ctatgccagc
     7441 catatgtcca agttggaacg aacaggatca gctggaatgg acctagcgga tgccttgact
     7501 ttagaagaaa tttcttcgct ggtagctgaa aatgattttt cattcctcca acctattgaa
     7561 cgtggcatcg gggatttacc tgttgtagaa ttgaaagaag agcaggtgca agatgctaca
     7621 tttggtcgat ttgtagaatt gaatgcagaa gcagagcgct tagcaggctt tcatgatggt
     7681 cagttgattg ctatttttga aaaacgcgac cagctgtata aaccgagcaa ggttttggtc
     7741 taagaaattt ctcaataact gtgataaaat agaaaacatg aacattagaa caattaaaca
     7801 ttatagtgaa ttgaatcaag aggagccgac tgttttggta ttaggctatt ttgatgggat
     7861 tcatttgggg cataaggccc tcttagaccg tgctagacaa gttgcagatg aaaaaggatt
     7921 gtcagtgacc gtactgactt ttccagagac ccctcgtctg gctttttctc gctttagccc
     7981 agaactttta ctgcatttga ccagtcaaga tcagcgttat cacttgttgg agcaatacgg
     8041 tgtagaccag ctggttttga cagattttac cagtgagttt gcaagcaata ctcctcagca
     8101 gtttttagaa cgctacatca aggggttgaa cgcacaagtc ttagtggcag gtttcgatta
     8161 tcatttcgga aattgcagag cagatgtgac agacttgaca gagttatttg atggtcaggt
     8221 agaaattgta agtgaagtaa gcctgggcgg agagaaagtt tcttcaactc gcattcgtca
     8281 ggctatccag tcaggggagg tctctctagc taatcaactt ttaggttatc catttatgac
     8341 ggagggaatt gttgttcatg gagatgccag agggcgcact attggttatc caactgcaaa
     8401 tctagctcct tttgaccgtg tccatttacc atctgaggga gtctacgtcg ctgatgtcga
     8461 agtagatgga aaacgctatc gagctatgac aagcgttggg aaaaatgtga cctttgatgg
     8521 aacggagatg cggatagaag cccatatttt tgggtttcac cgctttatct acggagaaaa
     8581 aataactatt ttttggcttg aaaaaattcg agatatggtc aaatttgatg gaattgaagg
     8641 attgatggag cagatgaaat ctgatgagaa atttgccttg caatggggga aatatgctta
     8701 aacgattgat tcgtcatcct ttttatgaga aggctatgac ctacatagct gtagtctatg
     8761 tatttcttat cgtacttgaa ttaatggatg ctagtattgc caattctagt gggtatcggg
     8821 tactagactt gctcttatgg tttatttttg tttgcgatta ttttgctcag ctttattatg
     8881 cggatgacat acttgaatat gtacagggac atatcttgga attaattgcc attattccat
     8941 ttgattcatt cttcagtttt cttcgcttgg gaagacttgc acgactcttc agattggtca
     9001 aagtaacgag aatatttgcc ctgtctaatc gattctggga tacaatcaac aagcttttgc
     9061 ataccaacag tttatccaaa gtgttgatgt taaatatctc agcagtgcta gtttcaagtg
     9121 tcttattatc agtaattgaa ggaaaatcat tcttcgatgc actttggtgg tccattgtaa
     9181 cgatgacaac tgtagggtat ggagatattg tcccccaaga tacgatttct aaaattatag
     9241 ccatcctctt gatgttggtt ggtatctgta cttttggtat ggttacctcc acaataactc
     9301 gttttttctc tgaaacagag cgagaaacga agttggatat cttgatggca aaaattgatg
     9361 aacaaaacga aacattatta cgcttagaga aaaaaataga atctttagaa aaattaggtg
     9421 aattacaggg aagagattag atttactatt gaaaactctt ttaagttaga gtataataat
     9481 aagaagaaaa atgtttttag aggggatgga agacatggtt actttatttt tgtcaccgag
     9541 ttgtaccagt tgtcgtaaag ctcgtgcttg gctgacaagt cacgaagtcc cttttattga
     9601 gcacaatatt atgactagcc ctctaactgc tgaggaatta aagaacattt tagcattgac
     9661 agaaaatgga acagatgact tgatttctac ccgttcaaaa gtttttcaga aactagatat
     9721 tgatgttgat gagctttctg tgaagcagct tattgggtta atcgaaacct atccgagtct
     9781 cttacggcgt ccgattattt tggatgagaa gcggatgcag attggtttta acgaagatga
     9841 aattcgtgca tttcttccgc gcaagtatcg caaacaagag ctaaaaaatg ctacattgag
     9901 agcagaaata ggataagaaa gataaaagat atgaacaaaa attattcata tccacttgat
     9961 ttttcgtgga gcacagagga gatttcctcc gtgctttctt ttttgaatca ggtggaggca
    10021 gcttatgaaa aaggagcaga tgcggtagct atattagcta gttataaaag cttcaaagat
    10081 gttgttaaaa gtaagggaca ggaacgtcaa attgatcgtg actttgaagc agtttctggt
    10141 tattcaacct atcgagttgt taaagctgct cgagataagg ggaaaggagt tattcgtttt
    10201 ggaaactaag tatcactttg cccaaacgat tgtcctggag gctggaaatt ttctccgaca
    10261 gcatttacat gatgatcttc agattgaaga aaaaggtgac tttacagact tggtaacaca
    10321 ccttgataaa caagtgcaag aaatgttgac tcaacagatt caatctcgct atcaaggtga
    10381 tgggatttta ggcgaggaag gtggggacgt ttcttctatt catgagggaa atgtttgggt
    10441 tattgatcca attgatggca ccacaaattt tattgctcag aaaactgatt ttgccattat
    10501 gattgcctat tttgaaaatg gagtaggaaa gtttggtatc atttatgatg tcatgcgaga
    10561 caaacttttc catggaggag attcattccc tgtttattgc aatcaagaac gtttaaagaa
    10621 accagagctg cgccctcttc gccagagttt gataggaatc aatgcaaagt tgtacgcagg
    10681 caatgcacat ggagtggcag aattagcaaa tcaaagttta ggtacaagat ctgtaggaag
    10741 cgctgggatt ggtttcaccc atgttctgga aggaagatta tttgcctatg cttcttatct
    10801 gtgtccatgg gactacgcag cagccagtat tattggttcc tctttaggct tagtcatgtt
    10861 aagttttgag ggtccgagtc tgacctatga taagcgagag tttgtcatgc tagtatcaga
    10921 atcccatctt aaggaagtga aggggtatat attctaatgc aattaccaca ggattttata
    10981 gataaatata atcatttgct tggtagtgaa gcccaagcat tttttgagag ttttgaacaa
    11041 gacccaatct caggatttcg cacaaatcct cttaaagaaa gccaattgga ctttgagcaa
    11101 ccaatcccta atatgacttg gtcatactat ggtaaggtct caggaaagtc tccagaacat
    11161 gtaactggct tagtctactc acaagagcca gctgcacagg ttgtaggtca gattgcagcc
    11221 ccggaaaaag ggatgaaagt attggacttg gcagcggcgc caggaggaaa gtctacccac
    11281 ttactttcat acttagaaaa tacggggctc ttggttagta atgaaatttc taacaaacga
    11341 gcaaaaatat tggctgaaaa tattgagcgt ttcggggcga gaaatgtagt cgtgaccaat
    11401 gaatctgccg atcgtttggc caaggtcttt ccaggatatt tcgatatgat tgtcctagac
    11461 gctccctgtt caggtgaagg gatgtttcga aaagaccccg atgcgattca atattggtcc
    11521 aaacattatc cagcacaatg tgcaagctta cagcgtgaaa ttttagaatc ggccttgaat
    11581 atgttggctc caggtggtca attgatttat tctacttgca cttggtcacc agaggaaaat
    11641 gaagaagtag tgacgtggct cttagaacag tatgatttgg aactaataga cattcctaaa
    11701 atcaatggaa tggtagaagg agtcggttat ccagaagttg ctcgtatgta tccccaccat
    11761 tttgcaggag aaggtcagtt cgttgccaaa tttagatttc taggagaagt cagtcagaaa
    11821 aaattaaaac caggaaaatc caatttgaat agagaacagc aagctctctg gaaagaattt
    11881 gaacagaagc atttaagggt tcaattggat ggtttactgc aggtttttgg cgacaatctc
    11941 tacctactgc cacacggcct tcctgatttg tcaaaagtaa agattgctcg aaatggtctt
    12001 cacttgggga cgtataagaa aaaaagattt gaaccaagtt ttgctttagg tctagcactc
    12061 catagttcgg aggttgaaaa tcgagtggaa atcagcttag aagaattctc gtcctatact
    12121 gcaggacata ccatagctgt gtccaaggat ttagctaatg gctggtatca ggtagcagtc
    12181 caggggaacg gtcttggttt cgcaaaaatt gtatctggaa cgcttaaaaa cggctttcca
    12241 aaagggttga gattttaaaa taaatcagca aatttttttg caacttgtct ttttatatga
    12301 tatagtggat gagtggaaat atcttgtaaa ttctatgtaa aatacagagt taattttagg
    12361 agattccact gaaaaatgta aaggaaaaaa cgaaatgaaa aaaaagcaga agcttggaat
    12421 tgcagctttg tttcttttga gtagtatggc tctttctggt tgttcttctt ggatcgatcg
    12481 aggagagtct attacagccg taggttcgac ggcgcttcaa ccacttgttg aggcagcagc
    12541 agatgaattt ggtagtgtca atatcggtaa atccgtcaac gttcagggtg gtggatcagg
    12601 tactggcttg tcacaagttc agtctggagc tgttcagatt ggtaactctg acgtatttgc
    12661 tgaggaaaaa gatggtattg atgcaagtaa acttgttgac catcaagtag cagtagctgg
    12721 tttggccgtt attgtaaatg agcaggtatc ggttaaagat attactacag aagatctgcg
    12781 taaaattttt actggtgaga ttaccaactg gaaagaacta ggtggtaagg atttggaaat
    12841 ttcaatcatt aaccgtgcag ctagttcagg ttcacgtgcg acctttgata gtgttatcat
    12901 ggatggacaa accgcaactc agagtcaaga acaagattct aacggtatgg taaaatctat
    12961 tgttgctcag acaccaggtg caatttccta cctatcattt gcttatctag atgattccgt
    13021 taaaacaatt aagttaaacg gttttgaacc aactgctgaa aatgtagcaa caaatgattg
    13081 gccaatttgg tcctatgagc atatgtatac gatgggaaaa gcgactgatt tgacagaaga
    13141 atttttagat tacatgatgt cagatgaagt tcaaaatggt atcgttgaaa gtatgggata
    13201 catttctatc aacgatatga aagttgtgaa aagtgctgat ggcacggtga ctgagaagga
    13261 gtaagcatga aaaacgaaca actagcaaaa gagttatcgt ctccatctaa aaattctcga
    13321 ttagagaagt ttggtaaggt aattacattc ctttgtctat cattgattgt ctttattgtt
    13381 gcaatgattt tgattttcgt tgcgcagcgt ggattatcga ctttctttgt tgacggtgtg
    13441 agcatcactg atttcttatt tggaagcaag tgggaaccaa gctcgaaaat atttggtgcc
    13501 ctgccaatga tttcaggttc tttcattgtt acgattctgt cagctgttgt tgcgacccct
    13561 atcgcaatcg gtgcagcagt ctttatgaca gaaatatcac caaaacgtgg tgcaaaaatc
    13621 ttacaacctg ttatcgaact tttggttggt attccatcgg ttgtatatgg tttcattggt
    13681 ttgcaagtag ttgtaccatt tgtacgttca atcttcggtg gaacaggttt cggtatcttg
    13741 tcgggtgtat ttgtactttt cgttatgatt ttgccaacag taacctttat gacggttgat
    13801 agtttgcgtg cagtacctcg tcactaccgc gaagcaagtt tggctatggg agctacccgc
    13861 tggcagacga tttggcgtgt tattttgaac gcggctaagc caggtatttt tacggccgtt
    13921 atctttggta tggcgcgtgc ctttggtgaa gccttggcga ttcagatggt agttggtaac
    13981 tcagcggtta tcccgacttc cttgacaacg ccagcagcga ctttgacttc tgttttgaca
    14041 atgggtatcg gtaatacggt tatgggaact gttcagaaca acgtcctatg gtccttggcc
    14101 ctagtcttgc tcttgatgag ccttatcttt aacatgatta tgaaatttat tacgagagag
    14161 ggtaagaaaa actatgcacg ctaaaaaatt tgataaattg gcgactggta ttctttactc
    14221 aatcgctggt gtgattgtcg ttatcttaac gtcactgatt ctttacatct tgctacgtgg
    14281 tctgccacat gtaagctggg attttttgac aagtaaatct tcatcttaca aagctggcgg
    14341 tggtattgga attcagctct acaactcatt cttcctattg gttgtaacgc tcttaatttc
    14401 tgttcctttg tcaaccggtg caggtattta tttggctgaa tatgctaaaa aaggtccatt
    14461 gactaacttt atccgtacct gtattgagat tttgtcatcc ctaccgtccg ttgtcgttgg
    14521 tttgtttggt tacttgattt tcgttgttca gtttgagtac ggtttttcta tcttatcagg
    14581 tgccttggct cttacagtct tcaacttacc acagatgacg cgtaacgtag aggacagcct
    14641 tcgtcacgtt caccatacac aacgtgaagc aggattggct cttggtctat cacgttggga
    14701 aactgttctc catgttgtta ttccagaagc acttccaggg attgtaacag gtatcgtctt
    14761 ggcatctggt cgtatcttcg gtgaggcagc agctcttatc tacacggctg gtcagtcagc
    14821 tccagctctt gactggtcaa actggaatcc attgagtgtt actagtccga tttctatctt
    14881 ccgtcaatca gaaacccttg cggttcatat ctggaaggta aacagcgaag gtacaatccc
    14941 agatgcaacc caagtttctg ctggttcagc agctattctc ttggtcttca tcttgatttt
    15001 caacctttct gcacgttata ttggtaagaa acttcatgcg aaactgactt cagcagccta
    15061 gaagtctgac ttataaggag aaaaaatggc agattacaac tggaatgaac gccatatcat
    15121 tactttttca gaggagaata tcgccctttc aacaaaagat gttcatgttt actatggtaa
    15181 aaatgaagcg atcaagggca ttgatatgca gttcgaaaaa aataaaatta cagccttgat
    15241 tggaccatca gggtgtggga aatcaaccta tcttcgcagt cttaatcgta tgaatgatac
    15301 tattgatatt gctaaggtaa ccggtcaaat tctttatgaa ggaatcgaca tcaatagacc
    15361 agatatgaac gtttacgaaa ttcgtaagca tatcggaatg gtattccaac gtcccaaccc
    15421 atttgcaaaa tctatttacc gtaacatcac attcgcacat gaacgtgcag gcgtgaaaga
    15481 taagcaggtt ttggatgaga ttgttgaaac ttctctgaaa caagcagccc tttgggatca
    15541 ggtaaaagat gacttgcaca agtcagcctt taccttatca ggtggacagc aacagcgttt
    15601 gtgtattgca cgagctatct ctgtaaaacc acaaatcttg cttatggatg agcctgcatc
    15661 agccttggac ccgattgcga ctatgcagtt agaagaaact atgtttgaat tgaagaagga
    15721 ctacaccatt atcattgtta cgcacaatat gcaacaagca gctcgtgcaa gtgattacac
    15781 agctttcttc tatctgggtg acttgattga atatgataag acagcaaacg tcttccagaa
    15841 tgcaaaactc aagtcaacta gtgactacgt ttcaggacat tttggataga aagggaacaa
    15901 atgacatcac ctattttaca agtaaaagat ttgtctgttt actataacaa gaaaaaagcc
    15961 ttgaataatg tgtcaatcga tttctatcca aatgaaatta ctgctttgat tggaccatct
    16021 ggttctggta agtcaaccct cttgcgttct attaaccgta tgggagattt aaacccagag
    16081 gtaacattga caggtgcgat tgattacaac ggaaagaaca tatacagtcc tcgtacggat
    16141 actgttgatc ttcgtaagga aatcggtatg gtattccaac aaccaaaccc attcccgatg
    16201 tctatctacg agaatgttgt ttatggttta cgtattaacg gtatcaagga caagcaggtc
    16261 ttggacgaag cagttgagcg ttccttgatt ggtgcttcta tttggaatga agtgaaagat
    16321 cgcttgcatg actcagcagt tggactttca ggtggtcagc agcaacgtgt atgtgtggcc
    16381 cgtgtattgg caacaagccc aaaaattatt ttgttggatg agccaacgtc agcccttgac
    16441 ccaatctcag ctggtaaaat tgaggacaca ctttatggtc tgaaagataa gtatacaatg
    16501 gtgctagtaa cacgttctat gcaacaggca tcacgtattt cagatcgaac aggtttcttc
    16561 cttgatggcg atttgataga atacaatttg acaaaagaaa tgttcttgaa tcctgccaat
    16621 aaagaaacag aagactacat tacaggtaag ttcggctaag gcctataaga aaaagaaaga
    16681 ggttcacatg ttaagagctc aatttgaaga ggaattagga aaacttcata accaatttta
    16741 cgccatggga aatgaagtat tggctcagat taataatgct gttcgtgcct ttacaactca
    16801 tgatcgtgaa ttagcaaaag aagtcattga agcagataag aaaattaatg ctttcgaagt
    16861 gaaattagag aaaaaatcac ttgaaatcat tgctctccaa caacctgtct caacagatct
    16921 tcgtcgcgtt atcacagtct taaaagcaac tagtgatttg gagcgtatgg gagaccatgc
    16981 agtctcagtt gctaaagcag ctatccgtat gaagggagaa gttcgcatcc cagttgttga
    17041 agaagaaatc aagaaaatgg gacgtgaagt ttgtcaatta gtagaagaaa ctttggaact
    17101 ctacttaggt gatgctgata tggagcgcgc ttatgaagta gcagcacgtg atgaggttgt
    17161 caatgaattc tattcaacta ttcaagaatt gacaacggaa gaaatcaaga agaatccaga
    17221 atccttggtt gctggtcgcg actattacca agttttaacc tacttggaac gtgtcggtga
    17281 ttatgctaaa aatatttgtg agtgggttgt ttatctacgc acaggtgata ttacagagtt
    17341 gtaattcaga agtccgagag ggctt
//
LOCUS       DASGBY010000034        16634 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.034, whole genome shotgun sequence.
ACCESSION   DASGBY010000034 DASGBY010000000
VERSION     DASGBY010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16634
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.034"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            64..1344
                     /locus_tag="U1396_000855"
                     /pseudo
     CDS             64..1344
                     /locus_tag="U1396_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365067.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
     gene            complement(1422..2954)
                     /locus_tag="U1396_000856"
     CDS             complement(1422..2954)
                     /locus_tag="U1396_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5342058.1"
                     /translation="MLLATQHLTLDHQKDLRNLVHDLNFIVNPGDKIAIIGEEGNGKS
                     SLLLTLMDSTLVADYLLISGSIHRYFHSPVYIPQGLPLKMAELTLNDYFFGDMGSNID
                     YHLLYLYADQLQFDSERFSSQQLIGSLSGGEKLKIQLIKSLATPSDIIFLDEPSNDLD
                     LDTLLWLENYIITSPKTILFVSHDEDFLSRTATKIIHLESVKKKTLAQTKVEELGYQD
                     YALKRHQAYQKQVQQARNDQKEFDKAMNKHLRQKSQVRHTLLNTHDATLGRLIAKKMK
                     NVLSREKRYERMKENLTQVPFHEDAISLFFSDISPLPARKQVLHLENFQLNIGGRQLV
                     QNIHFNLNGQEKIGIIGQNGIGKSSFLKIIYQKLRQRADINLGYMPQHYTEVLDESKT
                     PLDFLLENGNREQERLILTHLASLQFTRQEVHHKICELSGGQKAKLLLLKMVLEQVNF
                     LLLDEPSRNFSPTSQPYIRQLFADYPGGLVCVSHDRRFLKEVCQRIYRLTENGLEELE
                     QI"
     gene            3254..3745
                     /locus_tag="U1396_000857"
     CDS             3254..3745
                     /locus_tag="U1396_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342059.1"
                     /translation="MAITGIEQADILEIDKQVRLRRYDGQHDFAFEWHQDLELVWLID
                     GDQERYSLDLLDRMYDYLSKNGECYFIEIFEDGQFIPIGDVTLFADDFAIAIGDKRYW
                     EKGIGTKVLHRMIERARDVGLEEILVEEIYDWNTGSHKLFEKCGFEAVEKTKKGWSYK
                     MIL"
     gene            complement(3801..4541)
                     /locus_tag="U1396_000858"
     CDS             complement(3801..4541)
                     /locus_tag="U1396_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004254183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5342060.1"
                     /translation="MAQLKINVHDLHKSYGKNEVLKGITAKFYEGDVVCIIGPSGSGK
                     STFLRTMNLLETITSGQVTVDGYDLTDPKTDVDAFRSNVGMVFQHFNLFPHMSVLDNI
                     TFAPIEHKLMDKSEAEKVGMELLEKVGLADKRDAMPDSLSGGQKQRVAIARALAMNPD
                     IMLFDEPTSALDPEMVGDVLNVMKDLAEQGMTMLIVTHEMGFARKVANRVIFTDGGQF
                     LEDGTPEQIFDNPQHPRLQDFLDKVLNV"
     gene            complement(4541..6739)
                     /locus_tag="U1396_000859"
     CDS             complement(4541..6739)
                     /locus_tag="U1396_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM5342061.1"
                     /translation="MKKKLLMLLASILPVFFIFTGVKADDTIDVVFDNAYAPFEFKDS
                     DQIYKGLDVDIINEVAKRSGWTMTQSFPGFDAAVNAVQAGSADALMAGTTITEARKKV
                     FTFSDPYFDTKIVIATTKANTISSYKDLKGKTVGVKNGTAAQNFLEENKDKYGYNVKT
                     FDTGDLMYNSLSAGAVDAVMDDEAVIQYAIQQGQDLSIDIEGEAIGSFGFSVKKGSQY
                     EYLVEDFNKALAEMKKDGTYETIMNKWLGASTTSAESTDYSSRLSLTGNASAKATPVK
                     SSYTIVADSSFAPFEYQDESGNYVGIDMELIKAIAEQQGFTITIQNPGFDAALNAVQA
                     GQADAVIAGMSITDARKEIFDFSNAYYTSNILLAVKNGSDIASYEDLKGKTVGAKNGT
                     ASYSFLEENKAKYGYTLKAFDEASSMYDSLNSGSIDALMDDEAVLLYAIQQGRNFATP
                     IPGEKSGEYGFAVKKGANPELIEMFNNGLAALVESGKYDEILNKYFNSTEEASTTTST
                     VDETTIVGLLKNNYGQLLSGLGITIGLALLSFAIAIVIGIIFGMFAVSPVKALRVTSS
                     VFVDVVRGIPLMIVAAFIFWGIPNLIESITGQQSPINDFVAGTIALSLNSGAYIAEIV
                     RGGIQAVPAGQMEASRSLGISYGTTMRKIILPQAGKIMLPNFINQFVITLKDTTIISA
                     IGLVELFQAGKIIIARNYQSFRMYAILAIIYLVVITLLTRLARKLEKGGK"
     gene            6940..7599
                     /locus_tag="U1396_000860"
                     /pseudo
     CDS             6940..7599
                     /locus_tag="U1396_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935168.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7596..9581
                     /gene="uvrB"
                     /locus_tag="U1396_000861"
     CDS             7596..9581
                     /gene="uvrB"
                     /locus_tag="U1396_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HEM5342062.1"
                     /translation="MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMG
                     ATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQ
                     PEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
                     DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFR
                     VEFFGDEIDRIREIESLTGKVLGDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQL
                     KIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFF
                     PEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVH
                     QIVYVSATPGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKG
                     ERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGIN
                     LLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMR
                     KAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDE
                     RKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKNM"
     gene            9815..15550
                     /locus_tag="U1396_000862"
     CDS             9815..15550
                     /locus_tag="U1396_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5342063.1"
                     /translation="MSIGLVSAAVASLFFASSVAAAPSASAQSINYSYVTEQELTDAE
                     KELIIRDLPGLAQETDANYYLIYRPATGTTSTPSTSTSQVLPNTGSVETGLLVAGGVS
                     LLLLAVRFGKKGKKELAGVILLTATGASFFGPTSSALTSQILARYNHAIEISAGQALP
                     APAEIDGYVYVGYLKDSKAIEQTTSEEEKTAEFPASEGIRTETIVNKTEAIPFEIQTV
                     ENPQLSAGTERVVQEGQDGERIVTIKQVHSKGQIISEEEISSTVTKTAVPKIVEVGTK
                     QATDDIVTEVPDTEPSYENSTNSLTEETVTHTEVFAFDVQEIYDVNLAEGSREVEQKG
                     QDGVRTIETRNYYADGVLIKSEQVSDVVTKEPVTEVVRVGTKTTDVIGSETIVTTEEL
                     PFETTVTETEELYVGEEKFITEGKVGSKEVTTTYQTINGVSQPNPTVTEKVLEEPTTK
                     EVLKGTKPIEGTEIETNQVEIAFETEYVDDPTLLEGKTKVVTAGVNGSKTVTTTYQTI
                     KGVRQENPTVTEEITKQPVKQVIARGTKVEKVPQVIITDLVENDDAKSATISYKLTDE
                     TANFQRAVALLYDNTGALVQEQTITDPNGQLTLENLDFYTDYTVKTKIFYTMAEQEQS
                     SEQEAILESMRKFDLVYKKIEIKDIDAVTVYRRKNGSYIGQEFLEELPASTDELFIKV
                     TSDRFKEVYLPVSSIEETTLNGKAVFKLVSSFDELVQDKDAQYVANREFYIPKMATDA
                     NTYTSFKALLDAMKANPSGTFKLGAHLDASEVPVGDVASYVTNFSGTLDGLNDGYDFS
                     ISNLKAPLFFNLGGKVQNLDIKNASLNTSSKNPLATIAINANGATITNVAVEASIKGP
                     QNVSGLVHSATNTTIKGVSFKGSIEVTGTNASLTGGILGNGTMASVGNAKVDATITLP
                     GTENQVAGGIVGRTMLVYDVPGSVYNSYAAGSIVTTESAAIVGGIAGANQVTGAYAPH
                     SGNVNNVVSDMTGTKSIIGQPANPTGKIKDGFTTTSDSLTNVTVITDEEAQAKVEAMA
                     IQATIDDSVPLNLNHYSVDYLTLDKAQADHETAYYNMEKILPFYNKELLVYYGNKIAT
                     DDKLNKVRLLDVVPMKDNAVVADVYAEKANINKIMLHYADGTVDYKTVSYLEDFKNNH
                     VVEYTISGTDLIYTPESFLNDRSALVNDLVSSLSSVVLDSDAMKAVINYPTKLNADTQ
                     TGTAKDFYFGDSYNQVMANLESNVRKILVASLNGQGQASEDYIKEKITNNKAAFVLGL
                     TYLNRWYDINFGEMNTKDLTIFEPDFFGNDVASALDMILAIGNGGYDVLRAHNNVTTF
                     ASIIGKQNNQTKLFDMLEDYRQLFLPEMTNNEWFKQTTKAYVVEGKSLIPEVAAKQET
                     TDTYSKYNVGAYSKIVNDTVSNPAWKYNHMLLPLLTLPQENIFIITNMNTIAIGSYEH
                     YVDDYSTVENRDKVRQMVDLAAERQRDNADFWYKILDETNRDKLFRSVLNNEGYVMYG
                     KDGTKSYRNLTADVDAIQDFYGPINKWYREHPSIKTAFADGSETYYITYDMLTDYGTA
                     LYTHEMVHNQDGDIYLKGYGRRIGQGMEVYAQGLLQNVFNVTEMNLGFNAVYNSDDAN
                     RVHVGDPVARFNSEADFNEYYLNQFDVLYLLDYLEGTSILAQSDANKKAWLRNIENYY
                     VQNNGVDTQAGNSVRALTDAEVASLKSFNDLIDQSIIVQRQYVNNPTNTSKKWDRNSY
                     VSVPMFAANFSALSNSNGSPGDIMFRRMAFELIAAKGYTDGFVPYASGQLSDLAMEKG
                     SKIYDTWTKKDVGLITDNLVLEYVFQGQYTSWAEFKKAMFTERLEKAAAGQLKPFTMQ
                     YELDVADSTKEVTITSFEQLENLMKEAMEADIQANSLNLNNSRVHALKVKVYQALMNS
                     TNDFRTSIFNP"
     gene            15624..16127
                     /locus_tag="U1396_000863"
     CDS             15624..16127
                     /locus_tag="U1396_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342064.1"
                     /translation="MMIKPLETKSEILGKAYVHWKSWQEAYADLLPQEFLKKTYTLES
                     CQDWAVRYPKNILIAVMDDKVVGFACYCSSSQEDLQGAGELYALYVLADYYDQKIGYQ
                     LMQAALEKLQSYETVTLWVLEGNARAVAFYEKVGFRFDGVKKTVNLGAERTEYRMIFK
                     QKERENG"
     gene            16120..16587
                     /locus_tag="U1396_000864"
     CDS             16120..16587
                     /locus_tag="U1396_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5342065.1"
                     /translation="MARKEMVTLTNMCLIEDKEGKVVVQIRDPKRYRWSGVAFPGGHI
                     EEGENFHDSVVREVFEETGLTIANARLVGIKHWPDKEGYRYIVFLYKATEFTGTIRST
                     EEGEVRWVEKSDLSQMDLAYDLLEILKVMDEPDLSEFFYTRKNDDGEWDKNFR"
BASE COUNT         4951 a         3166 c         3764 g         4753 t
ORIGIN      
        1 taagtattag tcgagatggt aaaaatgagg tagaatacag aaaaagacca aaggagtacc
       61 tttatgacta gaggattttc atttgaaacc cttcaacttc atgctggaca agaagttgat
      121 tctgcttcaa aataacgtgc tgtacccatc tatcaaacca cttcctatgt ttttgaagat
      181 gctcaagaag cagaagattt atttgcattg cgtaaatcag ggaatatcta tactcgtatc
      241 acgaatccga cggtctctac ttttgaaaat cgtgtagcag ctttagaagg tggtattgat
      301 gccttggcca cttcttcagg aatggcagct atcacataga ctattctagg attagcgcat
      361 gctggtgatc acattgtggc ggcaacgaca ctctatggtg ggacttttaa cctattcaaa
      421 gaaacccttc ctcgctatgg tattacaaca agctttgtag atattgatga ttttgaagcg
      481 gtagaagctg cgattaaaga taatacaaaa ctggtattta ttgaaacctt gggaaatcct
      541 gttatcaata ttcctgatct tgaaaaattg gcagaaattg cacacaccca ccacatcccg
      601 cttgtttcag ataatacctt cgcaactcca tatttgatta atgtattttc tcatggtgtt
      661 gatatctcag ttcattctgc aaccaagttt atcggcgggc atggtacgac cattggcggt
      721 gtgattgtcg atagcggcaa gtttgattgg gcggcatctg gtaagtttcc gcaatttgtt
      781 gaagaagatc caagctatca taacattagt tatactcgtg atattggtgc tgcagcattt
      841 attgtagcag ttcgtgtaca attgcttcgc gatacaggtg ctgccctttc tccattcaac
      901 gccttcttgc ttttgcaagg gttagaaacc ttgtctctcc gtgtagagcg tcatgtatct
      961 aatgctgaaa aaattgttga ctttttactt agtcatcctc aggtagagtc ggtcaattat
     1021 ccatcacttc cagatagtcc ttataaggct ttggcggata agtacctgcc taagggagtt
     1081 ggctctattt tctctttcca agtaaaaggc ggagcagaag aagcccgtaa ggttattgat
     1141 agtttggaaa tcttttctaa tctagcaaac gttgccgatg ccaaatcact agtagttcat
     1201 ccagctacaa ccacgcatgc tcagttagct ccggaagatt tacttgctgc tggggtcaca
     1261 ccaaatcaaa tccgcctatc tgttggtctt gaaaatatca atgatttgat tgaagatttg
     1321 caacttgctc ttgataaatt ataggttgtg aatcgaatag catgacttca ttctttatga
     1381 ataaataaaa ggaaatttgg cgtgtgtgcc attttccttt tttatatctg ttctagttct
     1441 tccagtccat tttcagttag tcgatagatt ctttgacaaa cttctttcaa aaatcgtctg
     1501 tcgtgtgata cgcataccaa accacctgga taatcggcaa atagttgacg aatatatggc
     1561 tgagaagtag gcgagaagtt tcgactgggt tcatctaata agagaaaatt gacttgttca
     1621 agaaccattt ttaacaagag taacttggct ttttgtcccc ccgaaagttc acagatcttg
     1681 tgatgaactt cttgtcgtgt aaactgcaga ctggctagat gcgttaagat aagtcgttcc
     1741 tgctcacgat tgccattttc taataaaaaa tcaagtggag ttttagactc atcaaggact
     1801 tctgtatagt gctggggcat gtagcccaag tttatatctg ctcgttgcct gagtttctga
     1861 tagatgattt ttagaaagct ggatttacct attccatttt gtccaatgat gccaattttc
     1921 tcttgtccat ttaagttgaa atggatattt tgaactaatt gtcgccctcc aatgttcaat
     1981 tggaagtttt ctaagtgaag cacttgtttt ctagctggta gtggtgaaat atctgagaag
     2041 aagagggaaa tggcatcttc atgaaaagga acttgtgtaa gattttcctt cattctttca
     2101 tagcgttttt cacgtgataa gacattcttc attttcttgg ctatgagccg tcctagtgtg
     2161 gcatcatggg tgttgagcaa ggtatgacga acctgtgatt tttgacgtag gtgcttgttc
     2221 atggctttgt caaattcttt ttggtcattc cgagcttgct ggacctgctt ctgataagct
     2281 tgatggcgct tcaatgcgta atcctggtag cccagttctt caaccttggt ttgagcaagt
     2341 gttttctttt taacagattc taggtgaatg atttttgtag ctgttctgct aagaaagtct
     2401 tcatcgtggg aaacaaatag aatggtttta ggactagtaa tgatatagtt ttcaagccaa
     2461 agtaaggtat ctaaatccaa gtcattggac ggctcatcca gaaaaataat atcagatgga
     2521 gttgctagag atttgattaa ctgaattttt aatttttcgc cacctgacag gcttccaatc
     2581 aattgttgac tggaaaatcg ctcgctatca aactggagtt ggtcagcata gagatagagt
     2641 aggtggtaat caatgttact gcccatatct ccgaagaagt agtcgttcaa ggttagctct
     2701 gccattttca atggaagacc ttggggaatg tagactggcg agtgaaaata tcggtgaatg
     2761 ctgcctgata tgagtaggta gtcggcgaca agagttgaat ccatcaaggt tagtaataga
     2821 ctagatttgc catttccttc ttccccgatg atggctattt tatcgccagg gttgacaatg
     2881 aagtttaggt catgaaccag atttctcaaa tctttttgat ggtcgagggt taggtgttga
     2941 gtggctagta gcataaggcc tcctttacaa gaaaaaacac actacctatt tagtagtgtg
     3001 tcgaaatctg ctcaaaaaga ccctattcaa ggaatagagg gaacagaaaa atggacgcaa
     3061 gaaaactact aaataagtat agaacttaaa ttgagtttac ttgttattgt ccatttctcc
     3121 ttacctcgca tactttattt attttaatat agcatatcga tagaatcttg tcaatcagcg
     3181 tgctataata ttcatagatt tcgatagaga tatatgttaa aatgaactta ttgtaaatga
     3241 gagaggatcc gaaatggcaa tcactggaat tgagcaagca gatattttag aaatagacaa
     3301 acaagtccgt ttacgtcggt atgatggtca gcatgatttt gcttttgaat ggcaccaaga
     3361 tctagaattg gtctggctga ttgatggtga tcaagaacgt tatagtcttg acttgctcga
     3421 tcgtatgtat gattatttgt ctaaaaatgg cgaatgttac tttattgaaa tttttgaaga
     3481 cggtcagttt atcccaattg gtgatgtgac gctgtttgca gatgattttg ccattgccat
     3541 tggagataag cggtattggg aaaagggaat cgggactaag gtgttacatc gaatgatcga
     3601 gcgtgcaagg gatgtgggtc ttgaggaaat acttgtcgaa gaaatttatg actggaatac
     3661 gggctcccat aaactatttg agaaatgtgg ctttgaagct gttgaaaaga caaagaaagg
     3721 ttggtcctat aagatgatat tgtaaattca tttggagata ccaaaaaaac cttgatgcaa
     3781 gtcaaggctt ttcgtttagc ttagacgttc aagaccttat caaggaagtc ttgtaaacgt
     3841 ggatgttgtg ggttgtcaaa gatttgctca ggagtgccat cttcaaggaa ttgaccgcca
     3901 tcagtaaaga taacgcggtt agcaaccttg cgggcgaagc ccatttcgtg tgtgacgatc
     3961 aacatggtca taccttgttc tgccaagtcc ttcataacgt tgagtacatc gccaaccatt
     4021 tcagggtcaa gggcagaagt tggttcgtca aagagcatga tgtctgggtt catagcgagg
     4081 gcacgagcga tggcaacacg ttgcttctga ccacctgaaa ggctgtctgg catagcgtcg
     4141 cgtttgtctg ccaatccaac tttttccaat aattccatgc cgactttttc agcttcagac
     4201 ttgtccatca atttgtgttc gattggtgca aatgtgatat tgtcaagtac agacatatga
     4261 gggaagagat tgaagtgttg gaataccatt ccgacatttg aacggaaggc atcaacatct
     4321 gtcttaggat cggttaagtc atatccatcg actgttactt gaccacttgt aatggtttca
     4381 agtaagttca ttgtacgaag gaaggtcgat ttacctgaac cagaaggacc gatgatacaa
     4441 acaacatcgc cttcatagaa cttagcagta atacctttga ggacctcgtt tttaccataa
     4501 gacttgtgta agtcatggac gttgattttt aattgagcca ttatttgcct cctttttcga
     4561 gtttgcgtgc taagcgagtc aagagtgtga taactaccaa gtaaatgatg gcaagaattg
     4621 catacatacg gaaggattgg tagttacgtg caataatgat tttacctgct tggaagagtt
     4681 cgaccaaacc aatcgcagaa atgatagtag tatctttcag agtaataaca aactggttga
     4741 taaagttagg caacatgatt ttaccagcct gtggcaagat aatcttacgc atggttgttc
     4801 cataggaaat acccaaacta cgagatgctt ccatttgacc cgcaggaact gcctgaatac
     4861 caccacgaac aatctcagca atataggcac cagagttgag ggatagggca atcgtaccag
     4921 cgacaaagtc attgattgga gattgttgac cagtaatcga ctcgattaag tttggaatgc
     4981 cccagaagat gaatgcagcg acaatcatga gcggaatacc acgaacaaca tctacaaaaa
     5041 cagatgaagt aacacggagt gctttaactg ggctgacagc aaacataccg aagataatac
     5101 cgatgacaat tgcaatagca aatgatagaa gggcaagtcc gattgtgata ccaagacctg
     5161 agagcaattg accgtagttg tttttcaaaa gaccaacaat tgttgtctca tcaacagttg
     5221 aagtcgttgt gcttgcttct tcagttgagt tgaaatactt attaaggatt tcatcatact
     5281 tgcctgattc aactagggca gctaagccat tgttaaacat ttcaattaat tctgggttgg
     5341 cacctttttt aacggcaaat ccgtactcac ctgatttttc gccaggaatt ggtgttgcaa
     5401 agttgcgacc ttgttggatg gcatatagaa gaaccgcttc gtcatccata agagcatcaa
     5461 tagaaccaga gtttaaactg tcatacatac ttgaagcttc gtcgaaggct tttagggtgt
     5521 aaccatattt tgccttgttt tcttctaaga aactatatga agcagtacca tttttagctc
     5581 caacagtttt cccttttaag tcttcgtaag aagcaatgtc actaccattt ttaacagcta
     5641 ataggatgtt tgaagtatag taggcgtttg agaagtcaaa tatttcctta cgagcatctg
     5701 tgatagacat accggcaata actgcatcag cttgtccagc ttgaacagca tttagtgcag
     5761 cgtcgaaacc agggttttga atggtaatag taaatccttg ttgttcagcg attgccttga
     5821 ttaattccat gtcaatcccg acatagttac ctgattcatc ttggtattca aatggagcaa
     5881 aagaagaatc tgccacaatt gtgtagcttg atttgacagg tgttgcttta gctgatgcgt
     5941 ttcctgttaa gcttaaacga gatgagtaat ctgtactttc ggcagaagtg gtagaagctc
     6001 ctaaccattt gttcatgatt gtttcgtagg tgccatcttt cttcatctca gctaaagcct
     6061 tgttaaagtc ttcaacaaga tattcatatt ggctaccttt ttttacagag aaaccaaatg
     6121 aaccgattgc ttcgccttcg atgtcaatgc ttaggtcttg accttgttgg atagcgtatt
     6181 gaataaccgc ttcgtcgtcc atgacagcat caacagcacc agcagaaagg ctattataca
     6241 tcaaatcgcc agtatcaaaa gtttttacgt tgtatccgta cttgtctttg ttttcttcta
     6301 ggaagttttg ggctgcagta ccgtttttga caccgacagt cttgccttta aggtccttat
     6361 atgaagagat ggtatttgct tttgtggtag cgataacgat tttggtgtcg aagtaagggt
     6421 ctgagaaagt aaatactttc ttacgcgctt cggtgatagt tgtacctgcc attagggcgt
     6481 ctgcagatcc agcctgtaca gcgtttacag ctgcatcaaa tcctgggaag ctttgagtca
     6541 tggtccaacc tgagcgcttg gctacttcgt tgatgatgtc aacatctaat cctttataaa
     6601 tttgatctga gtctttaaac tcgaatgggg cgtaagcatt gtcaaatacg acatcaatag
     6661 tatcgtcagc tttaacgcca gtaaaaataa agaatactgg cagaatgctt gccaataaca
     6721 tgagtaattt tttcttcatt tccatactcc ttctattata aaataactgt cctagtatat
     6781 catattctga aaattaatgc aaaattgagg tttttataat gtcagaattt ctgacatgca
     6841 aagtcattaa aatgtgagaa aatttaatgt tttagggcaa ttgattttga gtaagttcaa
     6901 gcggacttgt ggtaaaatag aatagtgaaa ggaatgagta tgattgttcg ttatagcaga
     6961 tgaaaatctt tgttggcctt gggtctgagt ttgttttttg gcttgccatt gtcttatgta
     7021 acggttgatt tatttatcag tttatgggga gaagatgtag cgacagtgat cctcggtggg
     7081 attttatttt tactgatctt tggcattcca accttggctt cacatctggt tattatcgtt
     7141 tctatacagc gcctcttttt tggattaaaa gcatttgaac tgacagagaa gcactttgtt
     7201 ctctatcggg gaatatttcg aagaaaagct gtgtccattc ctataaacga aattgagttt
     7261 atctgcctag aagaacagac actaggagca ggcttgagcc gtctttttgg aaatgtttct
     7321 gaaaaaacag tagtatctgt agggaagaca atcgcatttg cgactggggc taaaacgagt
     7381 gcaagggcca gtttgtctga cacctacacg cacttattga tattgtttca tgacagtgag
     7441 cgagctgtct tttatgctaa acaatatgga attaagataa agaatttatt gaaatacacg
     7501 gcggaaactt cgattcttga tattgaaccc ggcccaattg agcatttttc cgaagagaag
     7561 ttgcaagatt tactagaaga aagaaaactg aacaaatgat aaatcgaaat actgaaaacc
     7621 aatttaaact tgtttctaaa tactcaccgt ctggtgacca gccccaagcc attgaaacct
     7681 tggttgataa catcgagggg ggcgaaaaag ctcagattct catgggggcg actggtacgg
     7741 gtaagaccta caccatgagt caggtcattg cccgtgtcaa taagcccact cttgtcatcg
     7801 cccacaacaa gactctagct ggtcagctct acagcgagtt caaggaattc ttcccagaaa
     7861 atgcggtcga atacttcgta tcttactatg attactacca gccagaagcc tatgtaccgt
     7921 ctagcgatac ctatatcgag aaggacagtt cggtcaatga tgagattgac aaacttcgtc
     7981 attcagcgac ttcagcactt ctcgaacgaa atgatgtcat cgttgtggct tcggtttcct
     8041 gtatctacgg tttgggatcg cccaaggaat attcagatag cgtggtcagc ctgcgaccag
     8101 gtcaggagat ttcccgtgat cagttgctca actctctggt agatattcag tttgagcgca
     8161 acgacatcga cttccaacgg gggcgtttcc gtgtacgtgg agatgtggtg gagattttcc
     8221 cagcttcccg tgatgaacac gcctttcgtg tggagttttt tggtgatgaa atcgaccgca
     8281 ttcgtgagat tgaaagcctg acagggaagg ttttgggcga tgtggatcac ttggccattt
     8341 tccctgccac ccatttcgtg accaacgatg atcacatgga aacggctatt gccaagattc
     8401 aggcggaact ggaagagcag ctcaagatct ttgaggcaga aggaaaactc ttagaagctc
     8461 agcgattgaa acaacggacc gactacgaca tcgagatgct tcgggaaatg ggttacacca
     8521 acggagttga gaactattca cgacacatgg acgggcgaag cgagggcgag cctccgtaca
     8581 cactgctgga ctttttccct gaagactacc tgattatgat tgacgagagc cacatgacca
     8641 tggggcagat taaggggatg tacaatggtg accgctcacg caaggagatg ttggtcaact
     8701 atggcttccg cctcccgagt gcactggaca atcgtccgct gcgcagggaa gaatttgaga
     8761 gccatgtcca ccagattgtc tatgtatctg cgacgccggg tgactatgaa atggagcaga
     8821 ccgataccgt tgtcgagcag atcattcggc cgacagggct tctggatcca gaagtggaag
     8881 tccgtccaac catgggccaa atggatgacc tcttgggcga aatcaatgcc cgtgttgaga
     8941 aaggtgagcg gacctttatc actaccctga ccaagaaaat ggcagaggac ttgactgact
     9001 acctgaaaga aatgggcgtc aaggtcaagt atatgcactc ggatatcaag accttggagc
     9061 gtacggagat tattcgtgat ttgcgtttgg gtgtctttga tgttctgata gggattaacc
     9121 tcttgcgtga ggggattgat gtgccagaag tcagtctggt tgcaatcttg gacgctgaca
     9181 aggaaggctt cctccgaaat gagcgtggac tcatccagac aatcggtcgg gcagctcgta
     9241 attctgaagg tcatgtgatt atgtatgcgg acaaggttac cgagtctatg cgcaaggcta
     9301 tggaggaaac agcccgccgc cgtcaaatcc agatggccta taatgaagaa catggaatca
     9361 ttccacagac cattaagaaa gaaatccgtg acctgataag cgtgaccaag gctgtcactc
     9421 aggacaagga agaagtagtg gacttcaatg ccctcaacaa agacgaacgc aaggctatga
     9481 tcaagaaact ggaaggtcaa atgcaggaag ccgcagaagt gcttgacttt gaactggcag
     9541 cccagattcg tgatatggtc attgagttga agaatatgta gtaagagtta ctaggttccg
     9601 tgatttaagt agaatgaaat tacaagaggc ggcaggtaga aattgacctg ccacctttta
     9661 taatacttaa aatttttact tggggactta gggacaaaaa atttgtccct gtccctataa
     9721 aaggttataa tggtttctat actatttagg gaataggggg agtttttatg aaaaatattt
     9781 tggtgaaaaa cgacagcggt tcggttttcg gaaactgtcg attggacttg tctcggcagc
     9841 tgtagcaagt ttgttttttg cgtcatcggt cgcagcagca ccgtcagcta gtgctcagtc
     9901 tatcaattat tcctatgtga cagagcaaga attgacagat gcagaaaagg agttgattat
     9961 tcgtgacttg cctggcttag ctcaggaaac ggatgcaaat tattacctga tctatcgtcc
    10021 agctactggc acaacatcta ctccatcgac gagcacgtct caagttttgc caaatactgg
    10081 ctctgtagaa accggactat tggtggcggg tggagtgtct cttctgttat tggctgttag
    10141 atttggtaaa aaaggtaaga aggagttggc aggtgtcatc cttttgacag ctacgggagc
    10201 aagcttcttc ggtccaacta gctccgcatt gacgagtcaa attttggctc gatataacca
    10261 tgcaatcgaa atatctgccg gacaagcgtt accggcccca gctgagattg atggctacgt
    10321 ttatgtagga tatttgaagg atagcaaagc tattgaacaa actacttcgg aagaggaaaa
    10381 aacagcggaa ttcccagctt cagaaggaat ccgtacagaa actattgtca acaagacaga
    10441 ggccattcca ttcgaaattc aaaccgtaga aaatcctcaa ttatctgcgg ggacagagcg
    10501 agtggtacaa gaaggacagg atggggagcg tattgtaacg attaaacaag tccattcaaa
    10561 aggtcaaatt atttcggaag aagagatttc ctcgacggtt acaaaaactg ctgttccaaa
    10621 gattgttgaa gttggtacaa aacaagcaac cgatgatatt gttacagaag taccagatac
    10681 agaaccaagt tatgaaaact cgacgaattc tttaacagaa gaaacagtta ctcataccga
    10741 agtctttgcc tttgatgtgc aagaaatcta tgatgtaaac ttggcagaag gtagtcgtga
    10801 agttgaacag aagggacaag atggtgttcg gacaatcgag actaggaatt attatgccga
    10861 tggtgtactg attaaatccg aacaagtttc agatgtagtg acaaaagaac cagtaacaga
    10921 agttgtaaga gtaggcacga agacaacaga tgttattggt tctgaaacca ttgtaacaac
    10981 agaagagctt ccgtttgaaa cgacagtcac agaaacagaa gaactttatg ttggggaaga
    11041 aaaattcatt actgaaggta aggttggttc taaggaagtt accactactt atcagacaat
    11101 caacggagtc agtcaaccaa acccaacagt gactgagaaa gtccttgaag agccaacaac
    11161 gaaagaggtt ctcaaaggaa caaaaccaat agaaggtacg gaaatcgaaa ctaatcaagt
    11221 tgaaattgcc tttgaaacag agtatgttga tgacccgaca ttgttagaag gtaagaccaa
    11281 agttgtaacg gcgggtgtaa atggctctaa gacagttaca acaacttacc agactatcaa
    11341 gggagttcgt caggaaaatc ctactgtaac agaagaaatc acaaaacaac ctgttaagca
    11401 agtcattgcg cgtggtacaa aagttgagaa agttccacaa gtgattatca cagatttggt
    11461 ggaaaatgac gatgccaagt cagcgacaat cagctacaag ttgacagacg aaaccgctaa
    11521 tttccaacga gctgttgctc tcctctatga taatacaggt gccttggttc aagaacagac
    11581 cattacagat ccaaatggcc agttgacact tgaaaatctt gatttctaca cagattacac
    11641 tgttaagact aagattttct acacaatggc agagcaggaa caaagttcgg aacaagaagc
    11701 tattcttgaa agcatgcgca aatttgattt ggtctacaag aagattgaaa tcaaggatat
    11761 tgatgcggtg actgtttacc gtcgtaagaa tggtagctac atcggtcaag aattcttgga
    11821 agaactgcca gcatccacag atgaattgtt tatcaaggtg acttcagatc gcttcaagga
    11881 ggtataccta cctgtgtcaa gtattgaaga aactaccttg aatggcaagg cagtcttcaa
    11941 actagtttca tcctttgatg aattggtaca ggataaggat gcccaatacg ttgccaatcg
    12001 tgaattctac attcctaaga tggcgactga tgcaaatacc tacacatcct tcaaagcttt
    12061 gctcgacgct atgaaggcaa atccaagtgg tacctttaaa ctaggagcgc atttggacgc
    12121 aagtgaagtt cctgttggag atgttgcatc gtatgtgacc aactttagcg gtaccttgga
    12181 tggcttaaat gacggctacg acttttctat cagcaacttg aaagcaccat tgttctttaa
    12241 ccttggtggt aaagttcaaa acttggacat caaaaatgca agcctgaata caagctctaa
    12301 gaacccactt gcgacaattg cgattaatgc caatggagca actattacaa acgtagcagt
    12361 agaagcatct atcaaaggac cgcaaaacgt atctggttta gttcattctg caacaaatac
    12421 tactattaaa ggtgtatcct tcaagggtag tatcgaagta accggaacca atgcaagtct
    12481 aactggtggt atcttgggta acggtacgat ggcaagtgtc ggaaatgcca aggttgatgc
    12541 gaccataacc ctcccaggta cagagaatca agtagctggt ggtatcgtcg gtcgtacaat
    12601 gcttgtctac gatgtaccag gaagtgtcta taattcttat gcagctggtt ccattgtgac
    12661 gactgaatcg gcagccattg tcggcggaat tgctggtgcc aaccaagtaa caggtgccta
    12721 tgctccacat agcggtaatg tcaacaacgt tgtcagcgat atgactggta cgaaaagcat
    12781 tatcggtcaa cccgcaaatc caactggtaa gattaaagac ggtttcacta caacatctga
    12841 tagcttgacc aacgtcactg ttatcactga tgaagaagcg caagcaaaag tagaagctat
    12901 ggctattcaa gcgacaattg atgattctgt accgcttaat ctcaatcatt attcagtaga
    12961 ctacttgacc ttggataagg cacaggctga ccatgaaact gcctactaca acatggagaa
    13021 aatcttgcca ttctacaaca aggaacttct tgtctattat ggaaacaaga ttgcgacaga
    13081 cgataagctc aacaaggtcc gtttgctgga tgttgtacca atgaaggaca atgctgtagt
    13141 tgctgacgtc tacgctgaga aggctaatat caataagatt atgcttcact atgctgatgg
    13201 cactgtggac tacaagacag tttcttatct agaagacttc aagaataatc atgtggtcga
    13261 gtataccatt tcaggtacgg acttgattta cacgccagaa tcattcttga atgacagaag
    13321 tgcccttgtc aatgacttgg taagcagcct ttcttctgtt gtcctcgact cggatgccat
    13381 gaaggctgtt atcaattatc caacaaaatt aaatgcggat actcagactg gcacagctaa
    13441 agacttctac tttggtgaca gctataacca agtaatggct aacctagaaa gcaacgttcg
    13501 taagattttg gttgctagtc taaatggtca aggtcaggct tctgaagact acatcaaaga
    13561 gaaaatcacc aataacaaag cagcctttgt gctcggtttg acttacttga accgttggta
    13621 tgacatcaac ttcggagaga tgaataccaa agacttgacc atctttgaac ctgacttctt
    13681 cggaaatgat gtagcatctg cccttgatat gattcttgca attggtaatg gtggctatga
    13741 tgttcttcgt gcccacaata acgtgaccac ttttgcatcc atcattggta aacaaaataa
    13801 tcagaccaag cttttcgata tgctggaaga ttatcgtcag ctcttcttgc cagaaatgac
    13861 caacaatgaa tggttcaagc aaacaaccaa ggcatatgtt gttgaaggta agtccttgat
    13921 tccagaagta gctgcaaagc aggaaacgac agatacttat agcaagtaca atgttggagc
    13981 ttatagcaag attgtgaatg atacggtatc taacccagct tggaagtaca atcacatgct
    14041 cttgccactt ttgaccttgc cacaagagaa tatctttatc atcactaaca tgaataccat
    14101 cgcgattggt tcttatgaac actacgtaga tgattattcg acagtggaaa atcgtgataa
    14161 ggttcgtcag atggttgatt tggcggcaga acgtcagcgt gataatgcag acttctggta
    14221 taagattttg gatgaaacca accgtgacaa gctattcaga tctgtcctca ataacgaagg
    14281 ttatgtgatg tatggtaaag atggtacgaa gtcttatcgc aacttgacag ctgatgttga
    14341 tgctatccaa gatttctacg gtccgatcaa caagtggtat cgtgagcatc cgtctattaa
    14401 gactgccttt gcggatggaa gtgagaccta ctatatcact tacgatatgt tgacggatta
    14461 cggtacagct ctttataccc acgaaatggt tcacaaccaa gatggtgata tttatctgaa
    14521 aggctatggc cgccgtattg gtcaaggtat ggaagtttac gcccaaggtc ttctacaaaa
    14581 tgtcttcaat gttactgaga tgaaccttgg attcaacgct gtctataata gcgatgatgc
    14641 caaccgtgtc catgtcggag acccagttgc acgtttcaat agcgaagctg atttcaatga
    14701 gtattacctt aaccaatttg atgtacttta cttgctggat tacctagaag gtacaagcat
    14761 cttggctcaa tcagatgcta acaagaaagc ttggttgcgt aatattgaaa actactatgt
    14821 ccaaaataat ggtgttgata cccaagctgg aaactctgtg cgtgcattga cagatgccga
    14881 agtggcaagc ttgaagtcct tcaatgattt gattgatcag agcattattg ttcaacgcca
    14941 atatgtcaac aatccaacta acacaagcaa gaagtgggat agaaacagtt atgtcagcgt
    15001 tccaatgttt gcagctaact tctcagccct ttcaaactca aacggttctc caggcgacat
    15061 catgttccgc cgtatggcct ttgaattgat tgcagctaaa ggctacacag atggttttgt
    15121 gccgtatgct tccggacaat tatccgacct agccatggaa aaaggttcta agatttacga
    15181 tacatggact aaaaaagatg ttggtttgat tacagacaat cttgtcttag aatatgtctt
    15241 ccaaggtcaa tatacttcat gggctgagtt caagaaagcc atgtttactg agcgtttgga
    15301 aaaagcagca gcaggccaac tcaagccgtt taccatgcag tatgaacttg atgttgctga
    15361 ttcaaccaag gaagtaacta tcacaagctt tgagcagttg gaaaacttga tgaaagaggc
    15421 catggaagca gacatccaag caaatagttt aaacttgaac aacagtcgtg ttcatgcact
    15481 caaagtgaaa gtttatcaag ccttgatgaa ctctacaaat gacttcagaa catcgatttt
    15541 taacccataa tcataaacaa gttggtcttg tgccaacttg ttttttaatg tatactagag
    15601 gaaaaaattc ggaggtcctt tagatgatga ttaaaccact ggaaacgaaa agtgaaatac
    15661 taggcaaggc ctatgttcat tggaaatcgt ggcaggaggc ctatgctgac ctgttacctc
    15721 aggaattttt aaagaaaact tacaccttag aaagctgtca agactgggca gttcggtatc
    15781 ctaagaatat cttgatagct gtgatggatg ataaggtggt tggctttgcc tgttactgct
    15841 cgtctagtca ggaggatttg caaggggcag gggagctcta cgccctctat gtcttggcgg
    15901 attattatga tcagaagata ggctaccagc tcatgcaggc agctttggaa aaattgcaga
    15961 gctacgaaac cgttactctc tgggtattgg aggggaatgc gcgtgctgtt gccttctatg
    16021 aaaaagtggg cttccgattt gatggtgtca aaaaaacggt caatttaggc gcagaacgta
    16081 cagaatatag aatgattttt aaacagaaag agagagaaaa tggctagaaa agaaatggtc
    16141 actttgacca acatgtgtct aatcgaagat aaggaaggga aggtcgttgt acagattcga
    16201 gatcccaagc gttatcgttg gtctggtgtt gcctttccag gtggacatat tgaagaaggc
    16261 gagaatttcc atgattcggt tgttcgtgag gtctttgagg agactggctt gacgattgca
    16321 aatgcacgac tagtcggaat aaagcattgg ccggataagg aagggtatcg ttacattgta
    16381 tttctctata aggcaacaga gtttacagga actatccgat caactgaaga aggcgaggtg
    16441 cgttgggttg agaagtcgga tctgtctcag atggatttgg cctatgactt actagaaatc
    16501 ctgaaagtca tggatgagcc agatttgtcc gagttctttt atactagaaa aaatgacgat
    16561 ggagagtggg acaagaattt taggtagaag ctaggaatag cttctttttt atgtcatttg
    16621 aataaaatac aata
//
LOCUS       DASGBY010000035        16234 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.035, whole genome shotgun sequence.
ACCESSION   DASGBY010000035 DASGBY010000000
VERSION     DASGBY010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16234
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.035"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..1136)
                     /locus_tag="U1396_000865"
     CDS             complement(<1..1136)
                     /locus_tag="U1396_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GBS Bsp-like repeat-containing protein"
                     /protein_id="HEM5342066.1"
                     /translation="MFLHVKYIKEMFVKKRTLLFLSLCASALNAQLVQADMVNAPSSQ
                     VSSSQVAETGGQLSVVDEAGQIKAILSNIQGEIIGVTAQFSTETNSGITVTFSMDEQG
                     RYVAVLDRSAFAEEDQVFSLKLTAQLTDGSFQTLSDYSFEWKKDVVSAAEKPTALDNS
                     DATPSKIEEEATSTTTSSTVNSSLTAGATSSTSNSLTRSSSNTIAGSSNGSASVPSAR
                     VSTASSSVNVTQPTGTITIENRNDAQGTFDVRVTNVSSPKDIASVILPTWSQSDDLRW
                     YEATRQSDGSYKLTVNKKDHKYRTGTYTVHLYYKDSSGGLTGAGGTTTHLSEVKPTGT
                     ITIENRNDAQGTFDVRVTNVSSPKDISSVILPTWSQTDDLRWYEA"
     gene            complement(1174..2214)
                     /locus_tag="U1396_000866"
     CDS             complement(1174..2214)
                     /locus_tag="U1396_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5342067.1"
                     /translation="MKKKAIVKPLLMSGIFLALLGSATLPSGAVPVVAAETSQSTTYH
                     LTDDEKVAVREYIQAKMTIDMQEYRLAFLEGMMEEMASGSAEAAWDEEIADLKANLTA
                     EQVVVLDELEANLIGSIAQHYHYLFETLTVAGKSGREEAAAIVSKYESEDDASTPEAE
                     LAALKYAREVIVELLNKESAAIDNYIAYAEATGQELAGLLESGNSNLESITSATIGYG
                     QALATASQPKFPYDFSEMDRQIAELTASLQSKVEDKSTAKTENTGVQTSQSATNGSNE
                     QDVPGQGGGQISDVTTGKGNISEAGQKKVIPNDNAKVLPKTSGKSSLPLTVLGLITIF
                     AGWLLTKKQEEK"
     gene            complement(2231..3082)
                     /gene="rfbD"
                     /locus_tag="U1396_000867"
     CDS             complement(2231..3082)
                     /gene="rfbD"
                     /locus_tag="U1396_000867"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019780653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEM5342068.1"
                     /translation="MILITGANGQLGTELRYLLDERGVDYVAADVAEMDITDADKVDA
                     FFAEVKPSVVYHCAAYTAVDMAEDEGKELNYKINVTGSENVAKAAAKYCATLVYISTD
                     YVFNGDLPVGKEWQVDDQPDPQSEYGRTKRKGEEAVEKFADKFYTVRTAWVFGNYGKN
                     FVFTMQNLAETRDTLTVVNDQHGRPTWTRTLAEFMVHLVDTKQAFGYYHLSNDAAEDT
                     TWFDFATEILKDTNTKVLPVDSSQFPAKAKRPFNSTMSLDKAKATGFVIPTWQEALEA
                     FYKQEKK"
     gene            complement(3137..4183)
                     /gene="rfbB"
                     /locus_tag="U1396_000868"
     CDS             complement(3137..4183)
                     /gene="rfbB"
                     /locus_tag="U1396_000868"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEM5342069.1"
                     /translation="MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN
                     KANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTN
                     FIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP
                     YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY
                     GEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKD
                     AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSQGLEETIQWYTDNQDWWKAEKE
                     AVEANYAKTQEVIK"
     gene            complement(4371..4856)
                     /locus_tag="U1396_000869"
     CDS             complement(4371..4856)
                     /locus_tag="U1396_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEM5342070.1"
                     /translation="MFQAFLEIAEQLNKLGITPLLMGSVGLERRTGRDWQARDLDIHV
                     PSDPRGWEAPDEERIYRADELIVLMNQLGYVLVDRHEHEFHKDGLSVEFGGLHSLPEF
                     AGVELEDLEELETVGVRYYLPTLEQYLKIYQASSKDSYRAENNNQKDFAKIAYLKEIL
                     R"
     gene            complement(4856..5449)
                     /locus_tag="U1396_000870"
     CDS             complement(4856..5449)
                     /locus_tag="U1396_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018029578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEM5342071.1"
                     /translation="MTENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEK
                     MLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREG
                     ETFGNTYQTVIDASKGIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYA
                     DPSLDIQWENLEEAEVSEADKNHPLLKDVKPLRKEDL"
     gene            complement(5449..6318)
                     /gene="rfbA"
                     /locus_tag="U1396_000871"
     CDS             complement(5449..6318)
                     /gene="rfbA"
                     /locus_tag="U1396_000871"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEM5342072.1"
                     /translation="MKGIILAGGSGTRLYPLTRAASKQLMPIYDKPMIYYPLSTLMLA
                     GIKDILIISTPQDLPRFKDMLGDGSELGISLSYAEQPSPDGLAQAFIIGEEFIGDDNV
                     ALILGDNIYHGNGLTKMLQRAASKEKGATVFGYQVKDPERFGIVEFDADMNAISIEEK
                     PEEPKSNFAVTGLYFYDNDVVEIAKNIKPSPRGELEITDVNKAYLDRGDLSVELMGRG
                     FAWLDTGTHESLLEAAQYIETVQRLQNVQVANLEEIAYRMGYITKEQVYELAQPLKKN
                     EYGQYLLRLIGEA"
     gene            complement(6416..7240)
                     /locus_tag="U1396_000872"
     CDS             complement(6416..7240)
                     /locus_tag="U1396_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEM5342073.1"
                     /translation="MTWVTNQSVVLQALLGGLFTWFCTIMGSAVVFFFKTVSRRLLDT
                     MLGFAAGVMIAASFWSLLAPSIEYAESSYGNLAWIPAAVGFAAGGIFLRLVDAWVPHL
                     HLGNDKDKAEGGGEKDRKNLSKTALLFLAITIHNIPEGLAVGVTFGALASNYSPAAFI
                     GAIGLAIGIGIQNIPEGAALAIPIRTDGASRWKAFYWGSMSAIVEPIAAVIGAFAVTF
                     MTPILPYALSFAAGAMIFVVVEELIPESQTNGNTDIATLGLMAGFIIMMILDVALG"
     gene            complement(7416..8210)
                     /locus_tag="U1396_000873"
     CDS             complement(7416..8210)
                     /locus_tag="U1396_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000881127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEM5342074.1"
                     /translation="MLASQVIERYQAFCPPSLAMEGDVKGLQIGTLNKEIQRVMVALD
                     IRETTVAEAIDKKVDLIIVKHAPIFRPINDLVADNPQTKMYLDLIKHDIAVYVSHTDI
                     DVVEGGLNDWFCELLEIQDTTYLIETAEGQGLGRVGTIAEQTLEELALKVKSVFGLDA
                     VRLVTYGHQAKQYVSRVAICGGSGGSYYHEALAKGADVYITGDIYYHTGQDMLTQGLL
                     AIDPGHHIEALFIKKIAELLEIWKAKEGWDVEILPSTVSTNPFRHL"
     gene            complement(8200..8883)
                     /locus_tag="U1396_000874"
     CDS             complement(8200..8883)
                     /locus_tag="U1396_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HEM5342075.1"
                     /translation="METKLSKRLETVASFVPQGARLVDVGSDHAYLPLFLVEQGRIDF
                     AIAGEVVQGPYQSALQNVEQAGQTEKILVRLANGLGAFEKSDQMTAVTIAGMGGRLIA
                     EILEAGKEKLATIERLILQPNNREDDVRRWLEKNGFRLVAEKILEENGKLYEVLVAES
                     GQMRLSEVEHRFGPYLLEEASPVFVKKWRRELEKLSFALEQVPSERQGDRFAISQKIQ
                     QIQEVVHVS"
     gene            complement(8885..9559)
                     /locus_tag="U1396_000875"
     CDS             complement(8885..9559)
                     /locus_tag="U1396_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HEM5342076.1"
                     /translation="MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFLYQNSS
                     AIESLAPSEIAQATGKTVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKL
                     DVLLTPKQAVEIVQPENDLKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRA
                     ALKEAVFNNKTNWKYIQAILRNWRREGITTVAQVEAKNAEREIQTPKNVTVSSDFLDA
                     MDLWKD"
     gene            complement(9569..10510)
                     /locus_tag="U1396_000876"
     CDS             complement(9569..10510)
                     /locus_tag="U1396_000876"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEM5342077.1"
                     /translation="MPIKIEKSLPAVEILRKENIFVMDSDRASHQDIRPIKILILNLM
                     PQKIVTETQLLRLLANTPLQLEVEFLYMASHESKNTHSDHLKQFYKTFEQVRDSYFDG
                     LIVTGAPVENLPFEEVDYWQELTQVFDWSKTHVYSTLHICWGAQAGLHARYGVPKHSM
                     SRKLSGVYCQEVTNPTSPLMRGFDDEFRSPHSRYTEVREADIAHLSGLTILSQGPEVG
                     LSILASKDLREIYSFGHLEYDRDTLAKEYQRDCIAGKNPHLPENYFKEDDPTSKPSLS
                     WNLPAAQFFTNWVNYAVYQETPYDWHIFEQSAQSASL"
     gene            complement(10614..11126)
                     /locus_tag="U1396_000877"
     CDS             complement(10614..11126)
                     /locus_tag="U1396_000877"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEM5342078.1"
                     /translation="MNLKDYIATIPNYPKEGIEFRDISPLMADGNAYSYAVREIVQYA
                     TDKQIDMIVGPEARGFIVGCPVAFELGIGFAPVRKPGKLPREVISADYEKEYGVDTLT
                     MHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELDDLKGREAIG
                     DYDYKVLMHY"
     gene            complement(11180..12310)
                     /locus_tag="U1396_000878"
     CDS             complement(11180..12310)
                     /locus_tag="U1396_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3114 domain-containing protein"
                     /protein_id="HEM5342079.1"
                     /translation="MAMWSRLMTVEALVVVGVIGTLLYTYWFIRQKSLLKNLEQITEI
                     KHALIELRRVGWSERAIKKVFLKQLLPLKQEDIPAFVQNFIKETTIFASTSFYQLIRV
                     DSRSLSQEKATALLEQSMNMLDFPEELSHGILPELLQKMDVNCPPHHPFWRYFAKLVD
                     KVFPVRELEVKRPLNRQVHQLRYFISYQQAFLVRQQFGKEKTDWQALIAYLRSLPRWF
                     YRLRESARLHNKQLFGKKNQKTLPVNMKILIHFHSEFILNQDGQFALILEERPHVNGV
                     VNGASFNYARANNKRHRQLDMAPVGRQDPVFRKELLRSKMGVYLSPTRFRRYQKGRNE
                     VGWEQSYFNQQGSFSYGGHSRAACVANLRRRFAKDIGLKCTK"
     gene            complement(12289..14502)
                     /gene="recJ"
                     /locus_tag="U1396_000879"
     CDS             complement(12289..14502)
                     /gene="recJ"
                     /locus_tag="U1396_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEM5342080.1"
                     /translation="MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSA
                     EELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASILK
                     ETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
                     EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHA
                     DLLDLVAIGTIADMVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEET
                     VGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEA
                     KTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAV
                     DIFKALKDHQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVL
                     DEELDLEELTLDTLKSFEKLAPYGRDNKKPVFYIRDFQVESARTMGQNNAHLKLRISK
                     GAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYN
                     IRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIA
                     KPYYLDGYGSREQFAKLYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELE
                     FVTITDGVMRVNKDAQKREISESQIYQELKETVIQQELMALGTVQEIYEWLCGRV"
     gene            complement(14658..16205)
                     /gene="cls"
                     /locus_tag="U1396_000880"
     CDS             complement(14658..16205)
                     /gene="cls"
                     /locus_tag="U1396_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM5342081.1"
                     /translation="MEKLWKIIYSRTFIVISLIILTIFLILWLVGSAATYMPALLIIL
                     QIFSIFVAISIINRPMNTSFKLTWIIFVIGIPIFGALFYFILQSNIETKRYRKNFHKQ
                     AQRLREYNKTSEKVMKALEQEDKEQLKLAHFMSEYVGYPIHTNTDAVYFSTGQEKFEA
                     LLEELKKAEQYIFMEYFIVDMGYMWDSILDILKEKAAQGVEVRFMYDGMNSLTNLPYN
                     YYKTLRKYGIKAKVFSQIIPALSTVQNNRDHRKIAIIDGKVAFTGGINIADEYINKKV
                     RFGYWKDAAIMIRGEAVANFTLMFLQMWNYNEKTETDDLKYLKTHKDLETETVDAEGF
                     FLPYGENPFDGDEVAKRVCLDMIQSATDYIYIMTPYLVLDDEMIDNLTYAAKRGVEVR
                     ILLPHIYDKKSAYLAARTDFPTYLEAGIEIFEFQPGFVHSKVVLVDDKKATVGTVNMD
                     FRSFYLNFECGLYIYNHSAVLAAIKDDFTHSFKKSQQINLLTFHKTYSWYKRLGGALL
                     RIISPLL"
BASE COUNT         4640 a         3732 c         3005 g         4857 t
ORIGIN      
        1 gcttcatacc aacgtaaatc atccgtctgt gaccaagtgg gtaaaataac acttgatata
       61 tctttcggtg atgaaacatt agtaacacga acatcgaagg tgccttgggc atcgttacga
      121 ttttcaattg tgatggtacc tgttggcttc acttctgata aatgagtcgt tgtgccacct
      181 gcacctgtta ggccaccact tgagtcctta taatataagt gaactgtgta ggtacctgta
      241 cgatacttat ggtccttctt attaacagtt aacttataac tgccatctga ctgacgagtg
      301 gcttcatacc aacgtaaatc gtctgactgg gaccaagtgg gtaaaataac acttgctata
      361 tctttcggcg atgaaacatt agtaacacga acatcgaagg tgccttgggc atcgttacga
      421 ttttcaattg tgatggtacc tgttggctgt gtaacattga ccgaactgga agctgtactg
      481 actcgagcac ttggaacact tgcagagcca ttcgaacttc ctgcaatcgt atttgaagaa
      541 cttcttgtca gcgaattcga agtactactt gttgcacctg ctgtcaaact agaattaacc
      601 gttgagcttg tagtagtcga agttgcttcc tcctcaattt tagacggagt tgcatcacta
      661 ttatccaaag cagtaggctt ctcagccgcg cttacgacat ccttcttcca ctcgaaacta
      721 taatctgata aggtctgaaa acttccatct gttaattgtg ctgttaactt cagcgaaaag
      781 acttggtctt cctccgcaaa tgcagaccga tccaaaaccg ctacgtatct accctgctca
      841 tccattgaga atgtgacagt aatgccgcta tttgtttcag tgctaaactg ggctgtaaca
      901 ccaataattt ccccttgaat gttcgataga atagctttaa tctgaccagc ctcatcaacg
      961 acagataact gcccgccagt ttcagcaacc tgagatgaag aaacttgact agatggggca
     1021 tttaccatat ccgcttgaac aagctgagca ttcaacgcgg atgcacacaa agaaagaaat
     1081 aataacgttc tttttttcac aaacatctcc tttatgtatt tcacatgtaa aaacaactat
     1141 atttctcaaa atagatgcaa ttacactaat cttctatttt tcttcttgct tctttgtcaa
     1201 taaccaacca gcaaaaattg ttatgagtcc tagtacagtt aatggaagac tagatttccc
     1261 tgaagttttt ggcaatacct tagcattatc atttgggata acctttttct gacctgcttc
     1321 ggaaatattg cctttgcctg tagttacatc agaaatctga ccgccccctt gacctggaac
     1381 atcctgctca tttgagccat ttgtagcgct ttgacttgtt tgtaccccgg tattttcagt
     1441 cttagctgta cttttatcct cgacttttga ttgtagacta gcagttagtt ctgcaatctg
     1501 tcggtccatt tctgaaaagt catacggaaa ttttggttgc gaagcagttg caagagcttg
     1561 accatatcct atagttgcag atgtaataga ttctaaatta gagtttccac tttccaataa
     1621 tccagctaat tcttgtccag ttgcttctgc ataagcaata taattatcaa tcgctgccga
     1681 ctctttattc agtagttcaa cgataacttc tctagcgtat ttcaatgcag ccaattcggc
     1741 ttcaggagta cttgcatcat cttcagactc gtacttagaa actatagccg ccgcttcttc
     1801 tcttccgctt tttccagcga ctgtaagtgt ctcaaataag taatggtaat gttgggctat
     1861 gctaccaatt aaatttgctt cgagttcatc taaaacaaca acttgctctg ctgttaagtt
     1921 tgccttcaag tctgcaattt cttcatccca cgcagcttca gcactacccg aagccatttc
     1981 ttccatcatt ccctcaagaa acgccaatct atattcttgc atatcgatag tcattttagc
     2041 ttgaatatat tcacgtacgg caactttttc atcatcagtt aaatgatagg tcgtactttg
     2101 acttgtctct gctgctacaa ctggaacagc tccggacggt agtgtagcac ttcctagtaa
     2161 agccagaaaa attcctgaca tcaacaacgg cttaacaatc gccttctttt tcatacacat
     2221 ctcctgtaga ctatttcttt tcttgtttat agaatgcttc caatgcttct tgccaagttg
     2281 ggatgacaaa acctgtcgcc tttgccttgt ccaagctcat ggttgagttg aatggacgtt
     2341 ttgccttggc tgggaactgg ctagaatcca ctggcaatac cttggtgttg gtatccttga
     2401 ggatttccgt cgcaaagtca aaccaagtcg tatcttctgc tgcatcgttt gacaaatggt
     2461 agtaaccaaa tgcttgcttg gtgtccacca agtgtaccat gaattccgca agggtacggg
     2521 tccaagttgg acgaccgtgt tggtcattga caaccgtcaa agtatcgcgg gtttccgcaa
     2581 gattttgcat agtgaaaaca aagtttttac cgtagttacc aaagacccaa gctgtacgaa
     2641 cagtgtagaa tttgtcagca aatttctcaa ctgcttcctc acccttgcgc ttggtgcgac
     2701 cgtattcaga ttgaggatcc ggttggtcat ctacttgcca ctctttgccg actggcaaat
     2761 caccattgaa gacatagtcc gttgagatgt aaacgagggt cgcacagtat ttagcggctg
     2821 ccttggcaac attttcagag cctgttacgt taatcttgta gttgagttcc ttgccttcat
     2881 cctctgccat atcaacagct gtgtaggctg cacagtggta tacaacgctt ggctttactt
     2941 ctgcaaagaa ggcatctact ttatctgcat ccgtgatgtc catttctgct acgtcagcgg
     3001 caacgtaatc aacaccacgc tcatccaaga gataacgcaa ttctgtaccc aactgaccat
     3061 ttgcacctgt aattaaaatc atatttgctc cttatttcaa gaaaggcttg ggcaagagcc
     3121 ctagccttta ataatcttat ttaataactt cctgtgtctt agcatagttg gcttcaacag
     3181 cttctttttc agctttccac cagtcttggt tatctgtata ccactggata gtctcttcca
     3241 aaccttgaga gaagtctgtg aattgtggtg tccaaccaag ctcgtcacga agtttgcttg
     3301 catcaatagc atagcgcaaa tcgtgtcctg cacggtcagt cacgtggtcg taagcatctt
     3361 ttggttgacc cattttttca agaatcaatt caagcacttc tttgttgttc ttctcaccgt
     3421 cagcaccgat taggtaagtt tcacccatac ggccttttgt caagattgcc caaacaccag
     3481 tcgagtggtc gttggtatga atccagtcac ggacgttttt accttcaccg taaagttttg
     3541 gcttaatacc tgccaagata ttggtgattt ggcgtgggat aaatttctcg atgtgttggt
     3601 aaggaccgta gttgtttgaa cagtttgaga tagttgcttt gacaccaaat gaacgcaccc
     3661 atgctttgac aatcaagtct gaagcagctt tggttgatga gtaaggtgat gacgggttat
     3721 agttggtttc cgcagtaaat ttctcgcctg gaccttcgcc atgacctggc aaatcttcac
     3781 gcaaaggaag gtcaccgtat acttcgtcgg tcgatacatg gtggaaacgg atgtcgtatt
     3841 tacgagccgc ttcaagcaaa gtgtaagtac cgataaagtt ggtatggata aatgggcttg
     3901 gatcgttgag agagttgtcg ttgtggcttt ctgccgcata gtgaacgatg gcatctgcct
     3961 tagcagccaa tttgtcaacc aactcagcat ctgcaatgtc gccaacaacc agctcaacac
     4021 ggtcaccaag aatagcttcc aagttagcct tgtttcctgc ataagtaagt ttatccaaaa
     4081 cagttacgtg aacgtctgga tgattgttat atacatagtg tacaaagttt gaaccgatga
     4141 aaccagctcc accagtcacg ataatatttt taaattgaga catttttttc tccgaaaagt
     4201 tttttctttt ttgtgtgtca tcttaggttg tggggtcgta agcaaccacc aaggtgtttc
     4261 attactaaac catgagccta aggtcccatg gtttcccccg ctccttagca aagcaaagga
     4321 gcttctcact acggcgatga cacacagaac tgctcgcttc gctcgctttt ttacctcaag
     4381 atttccttca agtaagcaat cttagcaaag tctttttgat tgttattttc tgcacggtag
     4441 gaatcttttg aagaggcttg gtagattttc aggtattgtt caagtgtcgg taggtaatag
     4501 cgaacaccta ctgtttctag ttcttccaaa tcttctagct ctacaccagc aaattcaggc
     4561 agtgaatgta ggcctccgaa ttccacagat aagccgtctt tatgaaattc atgttcatga
     4621 cgatcaacca ggacatagcc aagttgattc atcagaacaa tcagctcatc tgcacggtaa
     4681 atccgctcct catctggcgc ttcccatccc cgtgggtcac tgggcacatg aatatcaaga
     4741 tcccttgcct gccaatctcg tcctgtccgc ctttccagac cgacagaacc cattaacaag
     4801 ggagtgattc ctaacttgtt taactgctct gctatttcca aaaaggcttg aaacattaga
     4861 ggtcctcttt tctcaaaggc ttcacatctt tgaggagtgg gtgattttta tctgcttctg
     4921 aaacttctgc ttcttctagg ttttcccact ggatgtcaag gctcgggtca gcgtagttga
     4981 cgaaggcata cttaggctta agctccaaag cccagtagtc gttgaccaag tagctgtaag
     5041 ccacgaaatc tgacaagact tggaaaccat tggctactcc gcgcggaacg aagatacctt
     5101 ttgaagcatc gataacggtt tggtaggtat taccgaaggt ttcgccttca cgtagatcga
     5161 cccaagttcc caaaacctta ccgccgtctg ctactgaaat gtatttatcc caaggctctg
     5221 cgtgaagacc acgaagaacg tttttacgag agaaggaaac attattctgc aattttcctt
     5281 ctgcaaagaa gctttcagga aagccgagag gcaacatttt ttccttttgg aagttctcct
     5341 tgaaccagcc acggttgtcg ccatgaacag gaatgtcgaa ttctaacatt cctggaatag
     5401 cttcaactgg gcgagctgct agtgttttac cgaaaaagtt ttctgtcatt aagcttctcc
     5461 aatcaaacgg agcaagtatt gtccgtattc atttttctta agcggttgtg ccaattcata
     5521 cacttgttct tttgtaatgt agcccatgcg gtaagcaatt tcttccaagt tagccacttg
     5581 aacgttttgc aaacgttgaa ccgtttcgat gtactgtgca gcttccaaga ggctttcatg
     5641 cgtacctgta tccaaccaag caaatccacg gcccatcaat tcaactgata aatcacctcg
     5701 atctaagtaa gccttgttga catctgtgat ttccaactcg ccacgaggtg aaggcttgat
     5761 atttttcgca atctccacaa catcattgtc atagaaataa agaccagtaa cagcaaaatt
     5821 cgattttggc tcttcaggtt tttcttcgat agagatggca ttcatatcag cgtcaaactc
     5881 aacaatacca aaccgttctg gatcttttac ttgataacca aagacagtcg ctcccttttc
     5941 tttgctagca gcacgttgca acatcttggt caaaccattt ccgtggtaga tgttatcacc
     6001 aagaatcaag gctacattgt catcaccgat aaattcttca ccgataataa aggcttgcgc
     6061 caaaccatct ggacttggtt gttctgcata tgaaagtgaa attccaagtt cagaaccatc
     6121 tcctaacata tccttaaaac gtggaagatc ttgcggagtt gaaataatca aaatatcttt
     6181 gattccagcc aacatcaatg ttgacaatgg ataatagatc attggtttat cgtaaattgg
     6241 catcaactgt tttgaagctg cgcgcgtcaa aggatacaag cgtgtacctg acccaccagc
     6301 tagaataata cctttcatat aagagtacct tccctaaatt aatatcagtt cattatacca
     6361 tatttttaaa gatattgtca taagaaaaaa gcctgtgacg acagacttta acaaattatc
     6421 ctagagcaac atccaaaatc atcatgatga taaaaccagc cattaagccc agagttgcaa
     6481 tatccgtatt gccgtttgtc tgcgattctg gaataagctc ctctacgacg acaaaaatca
     6541 tggctcctgc cgcaaaggag agggcataag gtaaaatagg tgtcataaag gtgaccgcaa
     6601 aagccccgat gactgctgca atcggctcga caattgctga cattgatccc cagtaaaaag
     6661 ctttccacct agatgcgccg tctgtacgaa ttggaatagc taaggctgca ccttcaggaa
     6721 tattttgtat accgatccca atagcaagac cgattgcgcc gataaaagct gctggactat
     6781 agttagaagc tagtgcacca aatgtcacac cgaccgccaa gccttcagga atattgtgaa
     6841 ttgtaatagc taagaagagc agggctgttt tggatagatt ttttctatcc ttctcaccac
     6901 caccttctgc cttatcttta tcatttccca aatgcaaatg cggaacccag gcatctacca
     6961 agcgtaaaaa aataccacct gctgcaaaac ctactgctgc tggtatccaa gccagattac
     7021 cgtatgaact ttcagcatac tcaatcgatg gggctaataa agaccaaaaa gaagccgcaa
     7081 tcataacacc agctgcaaag cctagcatgg tatctagcaa acgacgacta actgtcttaa
     7141 agaaaaatac aacggcagac cccataatcg tacaaaacca tgtgaataaa ccacctagca
     7201 aagcctgtag aactacagac tgattagtaa cccaagtcat aactaacatc ctatcctgtt
     7261 taatcttgca tatcctataa agtaagatac cctaatttat tataaaattc aagctttttc
     7321 acttaaataa ataagaaaat atctaaaaaa taaaagacct aaaactacat taaatgtcgt
     7381 cttggtcttt ccacaatcaa gtgctgatta atttatcaca aatgtctaaa cggattggtt
     7441 gaaacagttg aaggtagaat ttcgacatcc caaccttctt ttgccttcca tatttccaac
     7501 aattcagcaa ttttcttgat aaataatgct tcgatatgat ggcctggatc aatagccagc
     7561 aagccctgag tcagcatgtc ctgcccagta tggtagtaaa tatcgcccgt gatgtaaaca
     7621 tctgccccct tagcaagagc ctcatggtag taagacccac cactgcctcc acagatggct
     7681 acacggctga catactgctt ggcttggtgc ccataggtca ctagacggac agcatctaga
     7741 ccaaagacag acttgacttt caaagccaat tcttccaaag tctgctctgc tattgtcccc
     7801 acacggccaa gcccctgccc ctcggcagtt tcaatcaagt aggtagtatc ttgaatttct
     7861 aatagttcac agaaccagtc gttgagacca ccctcaacca catcaatatc tgtatgacta
     7921 acatagactg caatatcatg cttaatcaaa tcaagataca ttttagtttg cggattgtca
     7981 gccaccaaat catttattgg acgaaaaatc ggagcgtgct tgactataat caaatctacc
     8041 tttttatcaa tcgcctctgc cactgttgtc tcacgaatat ccagagccac catgacacgt
     8101 tgaatctctt tattaagggt accgatttgc agccctttga catcgccttc catagccaaa
     8161 gaagggggac aaaaggcttg atagcgctca ataacctgac tagctaacat ggactacctc
     8221 ctgaatttgt tggatctttt gggaaatggc aaagcggtca ccttggcgtt cagatggaac
     8281 ttgttccaaa gcaaaactta atttttcaag ttctcttctc cactttttga cgaaaactgg
     8341 tgaggcctcc tctagtagat agggaccaaa acgatgttca acttctgaca atctcatctg
     8401 tcctgattct gcaacgagga cttcatataa cttgccattt tcttccagaa tcttttcagc
     8461 aaccaatcta aaaccatttt tttccaacca tcgacgcaca tcatcttcac gattatttgg
     8521 ctggagtatc aaacgttcaa tggtcgcaag cttttctttt cctgcttcta agatttccgc
     8581 aatcaagcgt ccccccatac ctgctatggt cacggcagtc atctggtcag acttctcaaa
     8641 cgcgcctaag ccatttgcca aacggactag aattttctct gtttgtcccg cctgctctac
     8701 attctggagc gctgactgat agggaccttg aacgacttcc cccgcaatgg caaaatcaat
     8761 acgcccctgc tctaccaaaa aaagagggag ataagcatgg tcactcccta catcaactag
     8821 acgtgcccct tgtgggacaa aacttgcgac tgtttccagc cttttagata attttgtttc
     8881 catatcaatc tttccagaga tccattgcat caagaaagtc acttgaaaca gtcacattct
     8941 taggagtctg gatttctctt tctgcatttt tcgcttctac ttgcgcaact gtagtaattc
     9001 cctcacggcg ccagtttcgt agaatagctt ggatgtattt ccaatttgtt ttgttgttaa
     9061 aaacagcttc tttcaaggct gcacgaacca aatcaatcga agttttgtca tcctcaatag
     9121 tcttctgcaa atcttcaatt tcaaacggcg ataaaaagcg gcccaattca cgttcaaaat
     9181 cacccaccaa ggtcttcaaa tcattctctg gttgcacaat ctcaactgcc tgttttggag
     9241 ttaacagaac atccaatttt tcaaaagcag gaagcgcatc gaatatcatt tcaatttcac
     9301 cagcaatact gattgtctta aattctaaga gtccagcatc ttggagattt tcaatagctt
     9361 gattgacctg agcaactgtt ttaccagtag cttgagcaat ctcactaggc gctaatgatt
     9421 cgatagctga agaattttga tataagaaaa actgccaaat caaaaaatca tctgccgacg
     9481 gaaaaagctc ttgatagtgg aataatattg ctgctggcag gaccaaatgt ccctgacgaa
     9541 attgctgtga atagttcata cttcctcttt aaagactagc tgactgggct gattgttcaa
     9601 agatatgcca gtcgtatgga gtttcttgat agacagcata attcacccag ttggtaaaga
     9661 attgtgctgc tggtaaattc caagagagag atggtttgct tgtagggtca tcttctttga
     9721 aataattttc cggtaaatgg ggattttttc cagctataca atcacgttga tattccttag
     9781 ctagtgtatc cctatcatac tctaaatgtc caaaactata aatttctctt aaatccttgc
     9841 tggctagaat ggatagacca acttctggac cttgtgataa aatcgtcaac ccactcagat
     9901 gggcaatatc tgcttctctt acttccgtat aacgggaatg tggtgaacga aattcatcgt
     9961 caaatccacg cataagaggg ctcgttggat tagtcacttc ttgacaatat acccctgata
    10021 gttttcgaga catactgtgt ttgggtacac catagcgtgc atgcaaacct gcctgtgcac
    10081 cccaacaaat gtgcaatgtt gaataaacat gtgtttttga ccaatcaaaa acttgagtaa
    10141 gttcttgcca gtaatcaact tcctcaaaag gtaaattttc aactggtgct cctgtcacga
    10201 tgagcccatc aaaatagcta tccctgacct gctcaaaagt cttataaaac tgcttcaaat
    10261 ggtccgagtg tgtatttttg gactcgtgac tagccatgta gagaaattca acctctagct
    10321 gtaaaggagt gttagccaaa agacggagca actgagtctc cgtcactatc ttctgtggca
    10381 tgagattgag aataaggatt ttgataggac gaatgtcctg atgactggct cggtcactat
    10441 ccatcacaaa aatattctct tttctcaaaa tttcaactgc tggtaatgat ttttcaattt
    10501 taattggcat aagcaacctc ccaattttct tatatttatt ataagacagg ttgctatgca
    10561 attcaattag aataaaaata ggaccagtta taagttttgg ctataacctt agattaatag
    10621 tgcatcaaaa ccttgtagtc gtaatcaccg attgcttcgc ggcctttcaa atcatctagc
    10681 tcaatcaaga aggcacagcc agcaacgata ccgccaagct tttcaatcat ttcgatcgtt
    10741 gcttttacag taccaccagt tgccaacaag tcatcaacga taagaacacg ttgacctggc
    10801 ttaatcgcat ccgcatgcat cgtcaatgta tctacaccat attctttttc atagtcagct
    10861 gagataacct cacgtggtaa cttacctggc ttacgaactg gtgcaaaacc gattcccaat
    10921 tcaaaagcaa ctggacatcc aacaatgaaa ccacgcgcct ctggcccaac aatcatatcg
    10981 atttgcttat ctgtcgcata ctgaacgatt tcacgtactg catagctata agcatttcca
    11041 tctgccatca aagggctaat gtcacggaat tcgatacctt cttttggata gttaggaatt
    11101 gttgcgatgt aatcttttaa gttcatttgt ctctctcttt ttaaaaataa tttttactct
    11161 tcattatacc atgaaattgt tatttggtac atttcagacc tatatcttta gcaaatcgtc
    11221 tcctcaaatt cgccacacaa gctgccctgc tatgcccacc ataggaaaag cttccttgct
    11281 gattaaagta agactgctcc cagccaactt catttcttcc tttttggtag cgacgaaagc
    11341 gagtaggcga taaatagact cccatctttg agcgtagcaa ttctttccga aaaacgggat
    11401 cctgcctgcc aactggagcc atatcaagtt gtctatgacg cttattatta gctctggcat
    11461 aattaaagga agcaccgttt accacgccat tgacatgagg tcgttcttct aaaatcaagg
    11521 caaattgtcc atcttgattt aggataaatt cactgtgaaa atgaatcaaa atcttcatat
    11581 tgactggcaa agtcttctga tttttcttgc cgaacagttg tttattgtgt aggcgggcag
    11641 attctcgtaa gcggtaaaac catcgaggta ggctacgtaa ataggctatc agagcctgcc
    11701 aatctgtttt ttcttttcca aactgctgac gtaccaaaaa agcttgctga taggaaataa
    11761 agtagcgcag ttggtggacc tgtctgttta acggccgttt gacttctaat tcccgcactg
    11821 gaaaaacctt atcaactagc ttagcaaagt accgccaaaa cggatggtgt ggaggacaat
    11881 tcacatccat cttctgcaaa agttcaggta atatcccgtg acttaattcc tcaggaaaat
    11941 ctaacatatt catactttgc tccaataaag ccgtcgcttt ctcttggctt aaagagcgac
    12001 tgtcaactct tatcaactga taaaagctgg tcgaggcaaa aatagtagtt tcttttatga
    12061 aattttgaac aaatgctggg atgtcttctt gttttagagg caacagttgt ttcaggaaaa
    12121 cctttttgat ggctctttct gaccatccta ctcgccgtaa ctcaatcagt gcgtgcttta
    12181 tttcggttat ctgttcaaga tttttcaaca gacttttttg cctgataaac caataagtgt
    12241 agagaagcgt tccaatcact ccaacaacaa ccagagcttc tactgtcatc aaacgcgacc
    12301 acatagccat tcataaattt cctgaacggt gccaagcgcc atcaactctt gttggataac
    12361 tgtttctttc aattcttgat atatttgact ttctgaaatc tctcgcttct gtgcatcttt
    12421 gttgacccgc atgaccccat ccgtaatcgt gacaaattct aattcttgga aaatctgaat
    12481 cattttaacc aatagactgt ccttaatttt taagtaaaca gccaaatctt tcagtttgta
    12541 gcgaacatca aactcatcaa attggtaaat agtcttatac aatttagcga attgttctcg
    12601 gctaccataa ccatctagat agtacggttt ggcaatttcg tttttaaaat aaatggcttc
    12661 aaattctctt tcctgaaaat agctacgcag actactgagg tcctcaggca agttagccaa
    12721 gacaattgct ttgttatctg ctactggatt ttcaatatcc aaaattggga ctccagcagg
    12781 aataggatgt tgctttccac gaatattata aagttgaaca ccattgaccc gagcatcaac
    12841 caacatgagc tgaagactgg tattgccatt ccattgattg acagacaagg tgacagctag
    12901 ttctaagccc ttggcctgtg aaaattccaa ggctagattg cccttaccaa aagcaaccac
    12961 atcaaaacct gccgcacctt tactaatgcg tagtttcaaa tgggcattat tctgccccat
    13021 ggtccttgct gattccacct gaaagtctct gatgtagaat acaggctttt tattatccct
    13081 gccgtaaggc gcaagcttct cgaaagattt tagagtatct agggttaatt cctctaaatc
    13141 caattcttca tctaagacca gcgaagactt gctggataaa tccaatttat tttcgataat
    13201 gtagtctgtc aaggtcagag caagttcttc aagtttgtca acttccaagg tcatacctgc
    13261 tgcaccagca tgaccaccaa aggcgataaa taggtcctga tgatctttaa gagccttgaa
    13321 aatgtcaact gcttcaaccg aacgagccga cccctttgcc ttaccatctt caatagacaa
    13381 gacgataaca ggttgctgca attcttctag taggcgtcct gctacaatcc ctaaaacacc
    13441 tgggttccaa ccttctttag ccagaacttg aaccggtcta tcctgacgga gcatggtttt
    13501 tgcttcatcg taaattgctt ggacgacgtc tttgcgttct acatttttac tgtcaatcat
    13561 gagagcaatt tgatgggcct cttcgtcatc aaaaccagtc agtaattcga tggctggatt
    13621 aggatcgtcg agtcgaccaa gggcattcaa cctcggagca agttggaaac caactgtttc
    13681 ttcatcaata ctgtctatgt caataccagc tatctttatc aactcttgca aacctgctcg
    13741 ctcagtctgt ttgagaagcg agagaccata tttgaccatg acacgattct catcggtcaa
    13801 gctaaccata tcagcgatgg tgccaattgc gaccaaatcc agcaagtctg catgaacagt
    13861 ttcaagaaga gcacaggcca atttaaaagc cacaccgcag cccgccaaat gtttgaaggg
    13921 ataatttccc tctggatgct ctggatgtac aatcgcatag gcattgggaa gggtttcctg
    13981 catggaatgg tggtctgtca cgacaacatc gacacccatt tcctgggcat aggcaatcgc
    14041 ttcatgaccc gctacgccat tgtccaccgt cacaataaga gaaatcccct gttgctcgat
    14101 aaaatacttg taaactgact gattcggccc atagccatct gtgaaacggt tgggaagata
    14161 aacttggact tctgccccca tttcctccaa agtttctttc agaatagatg ccgaggtcat
    14221 gccgtctgcg tcataatctc cataaatcaa aatttgttcg taatcttcga ttgctcggcg
    14281 aatccgctct accgccttgt ccatatcatg tagtaaatag ggatcgtgaa gatcttctaa
    14341 gcttggttgt aagaaagtat gcaattcttc cgccgaatgg atgccacgtt catacagcaa
    14401 cttagccgct accgggtcca ctccttcttt tttagcaatt ttgataaatt gttcatcaga
    14461 aaaaccggtc aataattgcc agtcataatt gggttttatc acgtttttta ctccttaata
    14521 ctcaaactca caagtagcct gtaaattttc cgagtataaa ctatctttct attatatcat
    14581 tttccaagaa aaatggagca aggtaagacc gaaacagaat gtcgatccct tgctccatga
    14641 agaacgaata ttgcaattta taataacggc gaaataattc gtagtagggc tcctcccaaa
    14701 cgcttatacc aagagtacgt tttatggaag gttagaaggt taatttgctg tgattttttg
    14761 aaggaatgag taaagtcatc cttaatagct gccaaaactg ccgagtgatt gtaaatatag
    14821 agaccgcatt caaaattaag ataaaaagag cgaaaatcca tattcaccgt accaacagta
    14881 gctttcttat catcgaccaa aacaactttg gaatggacaa atccaggctg gaattcaaag
    14941 atttcaattc ctgcttccaa gtaagtcgga aaatcagtgc gagcagccaa ataggctgat
    15001 tttttatcgt agatatgcgg tagtagaatg cgaacctcga ctccacgctt cgctgcataa
    15061 gtcaaattat caatcatttc atcatccaac actaggtagg gtgtcatgat ataaatataa
    15121 tccgttgccg actgaatcat gtctaggcag actcgtttgg ctacctcatc tccatcaaat
    15181 ggattctcgc catacggaag gaagaaacct tcggcatcaa cggtttccgt ctctaaatct
    15241 ttatgcgttt tgaggtattt taggtcatct gtctctgtct tttcattgta attccacatt
    15301 tgaaggaaca tcaacgtaaa gtttgcaaca gcttctcccc taatcataat cgctgcgtct
    15361 ttccagtaac caaaacgcac tttcttgttg atgtattcat ctgcgatatt aatgccaccg
    15421 gtaaaggcaa cctttccatc aataatcgca atttttctat ggtcacggtt attttgcacc
    15481 gtagataagg ctgggataat ttgagaaaat actttggctt ttatcccata ttttcgcaag
    15541 gttttatagt aattataggg aagattggtc agtgaattca tcccatcata cataaaacga
    15601 acttccaccc cttgcgctgc cttttccttc aaaatgtcaa ggatagaatc ccacatatat
    15661 cccatatcga caataaagta ctccatgaaa atatactgct ctgccttttt caattcttct
    15721 agtagagctt caaatttttc ctgacctgtt gaaaaataga cggcatccgt attggtatga
    15781 attgggtagc caacgtactc actcatgaag tgagctaatt tcagttgctc cttatcttcc
    15841 tgctccaatg ccttcatgac cttttcagac gtcttattat actcccgaag tctttgtgct
    15901 tgcttatgaa aatttttacg ataacgtttg gtttcaatgt tggactgcaa aataaaatag
    15961 aatagagcac caaaaatcgg aataccaatg acaaaaataa tccaggttaa cttaaaactg
    16021 gtattcatcg gtctattgat gattgaaata gccacaaaaa tcgaaaaaat ttgcaaaata
    16081 atcaataaag caggcatata ggtagctgcc gaacctacca accaaagaat aaggaaaatg
    16141 gttagaataa tcaaactaat gacaataaat gtccgactat atataatttt ccaaagtttt
    16201 tccatacatc tctcccttat tttttaccat tata
//
LOCUS       DASGBY010000036        16032 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.036, whole genome shotgun sequence.
ACCESSION   DASGBY010000036 DASGBY010000000
VERSION     DASGBY010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16032
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.036"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(196..1551)
                     /locus_tag="U1396_000881"
     CDS             complement(196..1551)
                     /locus_tag="U1396_000881"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM5342082.1"
                     /translation="MKVIKFGGSSLASAEQLEKVFNIVQSDSERRFVVVSAPGKRNAE
                     DTKVTDALIKYYKEYVNGKDVTASQEWIINRYQAMVDELGFTANSMKKIADSIISLAS
                     LPIDDNEFLYDAFLAAGEDNNAKLIAEYFTHRGLPARYVHPKKAGIIVSSEPGNARIL
                     PSSYDKIEELRDTDEVLIIPGFFGVTVDNQICTFSRGGSDITGSIIAAGVKADLYENF
                     TDVDGIFAAHPGIIKNPHSIKELTYREMRELAYAGFSVLHDEALLPAYRGRIPLVIKN
                     TNNPTHPGTRIVHKHTEQTVPVVGIAADDGFVSINLSKYLMNREVGFGRKVLQILEDL
                     NIRWEHMPTGIDDLSIVVRERELTPIKEEEILRQLNTKMEVDKAEIEHGLSIIMIVGE
                     NMKSHVGVTATATTALSKQNVNLAMISQGASEVSVMFVVKTEEKKRALHALYEAFFNE
                     Q"
     gene            1728..2369
                     /locus_tag="U1396_000882"
     CDS             1728..2369
                     /locus_tag="U1396_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEM5342083.1"
                     /translation="MVKAIIFDMDGVLFDTETFYFQRRADFLATKGLSVDHLDPSIFV
                     GGRASQIWQRILGDDYDNWDVPALEEEYRVYKEKRPTPYAERIFPEVKAVLERLTIQG
                     IPVVLASNTDRSEIERALLDAGIRFHFSHVFSAMDCEAPKPDPTVYMKAASATGVAKS
                     DILVFEDSAKGIEAAKKAGLTVWAIRDQHYGIDQSKADKLVDNLEEAFDLLRF"
     gene            2808..3599
                     /locus_tag="U1396_000883"
     CDS             2808..3599
                     /locus_tag="U1396_000883"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEM5342084.1"
                     /translation="MAYQTIRYEVIDSVAILTLNRPEVANGFNIPMCEEILEAIRLAE
                     GDASVKILQIQAQGSIFSVGGDLVEMKRAVDDDDIASLVKIAELVNDISFAMKKLSKV
                     VIMVTDGAVAGAAANMAVAADFVIASSKTKFIQAFVGVGLAPDAGGLFLLSRAIGANR
                     ASHLAMTGEGLSADKALEYGIVYKLAEPEKLEKTVAQVIKKLLRGSVNSYAAIKQLTW
                     ESQFKDWESYRRLELDLQETLAYKEDFKEGVRAHAERRRPVFTGD"
     gene            3679..4113
                     /locus_tag="U1396_000884"
     CDS             3679..4113
                     /locus_tag="U1396_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5342085.1"
                     /translation="MEDPKVNEYLTAIFNNVLVIEETSLRGSRFNDISIKEMHTIDVI
                     GSIDGATPSDVARTLMVTLGTVTTSLNNLERKGYVERIRSTKDRRVVHLYLTKKGRLV
                     YRLHQRFHNEMVKQITDGMDETEYQVMKKGLMKLYHFLEDLK"
     gene            4110..5087
                     /locus_tag="U1396_000885"
     CDS             4110..5087
                     /locus_tag="U1396_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEM5342086.1"
                     /translation="MRNHAKISQVAHYLPKKIVTNDDLAQRMETSDEWIRSRTGIGQR
                     HIVTGETTSDLASQVARKLLEKSQLDASEIDFIIVATITPDASMPSTAAMVQAAIGAK
                     KAFAYDLVAACSGFVFALSTAEKFLASGVYKRGLVIGAETLSRSVDWSDRSTAVLFGD
                     GAGGVLLEACEQPTFLAEILRTDGGRGASLTAGIDQKETPFSTQSRQQPFIQMEGRAI
                     FEFATRDVTATMAELLEQADMTVDRVDYFLLHQANIRILDKMARKLGVVREKFPANMD
                     KYGNTSAASLPILLSECVESGMLRLDGSQTVLMAGFGGGLTWGTLLLQL"
     gene            5147..5371
                     /locus_tag="U1396_000886"
     CDS             5147..5371
                     /locus_tag="U1396_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM5342087.1"
                     /translation="MAVFEKVQEIIVEELGKDAEEVTLTTTFEDLDADSLDLFQVISE
                     IEDAFDIQIDTEEGLTTVGDLVAYVEEKTK"
     gene            5542..6507
                     /gene="fabK"
                     /locus_tag="U1396_000887"
     CDS             5542..6507
                     /gene="fabK"
                     /locus_tag="U1396_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabK"
                     /protein_id="HEM5342088.1"
                     /translation="MKTKITELLDIKYPIFQGGMAWVADGDLAGAVSNAGGLGIIGGG
                     NAPKEVVKANIDKVKSITDKPFGVNIMLLSPFADDIVDLVIEEGVKVVTTGAGNPGKY
                     MERLHAAGITVIPVVPSVALAKRMEKLGVDAVIAEGMEAGGHIGKLTTMTLVRQVVEA
                     VSIPVIAAGGIADGAGAAAAFMLGAEAVQVGTRFVVATESNAHQAYKEKVLKAKDIDT
                     TVSASIVGHPVRAIKNKLSSAYAAAEKDFLAGKISADAIEELGAGALRNAVVDGDVTN
                     GSVMAGQIAGLVSKEESCEDILKDIYYGAAKVIREEASRWASVGE"
     gene            6509..7429
                     /gene="fabD"
                     /locus_tag="U1396_000888"
     CDS             6509..7429
                     /gene="fabD"
                     /locus_tag="U1396_000888"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEM5342089.1"
                     /translation="MTKIAFLFAGQGSQTVGMARDLYEYYPIVRETFDQASQILGYDI
                     RDLIDKQEDKLHQTRYTQPAILTTSVAIFRLLEEEGIQPDMVAGLSLGEYSALVASGA
                     LAFEDAIALIAKRGEYMETAAPAGTGKMVAVLNTDVNLIEEICSTVTSGIVSPANYNT
                     PAQIVIGGEVAAVDEAVELLKEAGVKRMIPLNVSGPFHTALLRPASEQLAQALEQVEF
                     ADFQVELVGNTEAKVMKKEDIKSLLTRQVMEPVRFYESIATMQEAGVTNFIEIGPGKV
                     LSGFVKKIDKTAHVVAIEDIEGLQIVLNKS"
     gene            7439..8173
                     /gene="fabG"
                     /locus_tag="U1396_000889"
     CDS             7439..8173
                     /gene="fabG"
                     /locus_tag="U1396_000889"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011225529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HEM5342090.1"
                     /translation="MELTNKNVFVTGSSRGIGLAIAHKFASLGANVVLNGRGQLGQDL
                     LDSFADYGVKVLAISGDISSAEDAKRMVAEAIETLGSVDILVNNAGITKDGMALRMTE
                     EDFDTVLKVNLTGTFNMTQAVLKPMTKAREGAIINLSSVSGLIGNAGQANYSASKAGV
                     IGFTKAIAREVAGRNVRVNAIAPGFIQSDMTDVLSDKIKEAMTAQIPMKRFGATEEVA
                     DVAVFLAKQEYLTGQVIAVDGGLTMQ"
     gene            8567..9802
                     /gene="fabF"
                     /locus_tag="U1396_000890"
     CDS             8567..9802
                     /gene="fabF"
                     /locus_tag="U1396_000890"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEM5342091.1"
                     /translation="MTKLNRVVVTGYGLTSPIGNTPEEFWDSLKAGKIGIGKITKFDT
                     SEYSVHNAAELKDFPFDKYFVKKDTNRYDNYSLYALYAAKEAIANAQLDTETVDSDRF
                     GVILSTGIGGILEIEEQVARMNEKGPKRIRPMALPKALPNMAAGNIAMQVGANGVCKC
                     IITACASSNDALGEAFREIKFGFQDVMLAGGAEAAITPFAIGGFQALTAMSTTEDPER
                     ASIPFDKDRNGFVMGEGSAVLVLESLEHAEARGATILAEIVGYGNTCDAYHMTSPHPE
                     GLGAIKAMKLAISEAGLEPADIDYINAHGTSTPANEKGESQAIVSVFGKNTPVSSTKS
                     FTGHLLGAAGAVEAAAVIEAMRHSYAPKTAGTTELSEDIEADVIYGQGRDMEIRHAIS
                     NTFGFGGHNSVIAFKRWEA"
     gene            9803..10279
                     /locus_tag="U1396_000891"
     CDS             9803..10279
                     /locus_tag="U1396_000891"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEM5342092.1"
                     /translation="MNITEIKDLMSQFDQSSLREFSYSNAGETLHFSKNQQATVAPSP
                     AVEAPLAPVTPASPALVPAVEMSEPAPAEAGASPVAEGAVVESPLVGVAYLSPAPDKP
                     AFVAVGDTVKKGQTLMIIEAMKVMNEVPADRDGVVTEILVANQDVVEFGQGLVRIK"
     gene            10276..10698
                     /gene="fabZ"
                     /locus_tag="U1396_000892"
     CDS             10276..10698
                     /gene="fabZ"
                     /locus_tag="U1396_000892"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEM5342093.1"
                     /translation="MIDIVKIKEALPHRYPMLLVDRVLEVSEDEIVALKNVTINEPFF
                     NGHFPDYPVMPGVLIMEALAQTAGVLELSKEENKGKLVFYAGMDKVKFKKQVVPGDQL
                     IMTATFVKRRGTIAVVEAKAEVDGKLAASGVLTFAIGK"
     gene            10995..12368
                     /locus_tag="U1396_000893"
     CDS             10995..12368
                     /locus_tag="U1396_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEM5342094.1"
                     /translation="MFEKILIANRGEIAVRIIRAARELGIATVAVYSEADKEALHTML
                     ADEAVCIGPARSTDSYLNMQAVISAAVVTGAQAIHPGFGFLSENSKFATLCEEVGIKF
                     IGPSGTVMDTMGDKINARAEMIKAQVPVIPGSDGEVLTSQEALAIAEKIGYPVMLKAS
                     AGGGGKGIRKVEKAEDLVPAFESASSEAKAAFGNGAMYMERVVYPARHIEVQILADQH
                     GHVIHLGERDCSLQRNNQKVLEEAPSIAIGQTMRERIGQAAVRAAQSVGYENAGTIEF
                     LLDEAKGEFYFMEMNTRVQVEHPVTEFVTGVDIVKEQIKIAAGQELSVRQEDVRITGH
                     AIECRINAENPAFNFAPSPGKISNLYLPSGGVGLRVDSAVYPGYTIPPYYDSMIAKVI
                     VHGENRFEALMKMQRALYELEIDGVVTNTDFQLDLISDKRVVAGDYDTAYLMEEFLPR
                     YQEDLKK"
     gene            12383..13249
                     /locus_tag="U1396_000894"
     CDS             12383..13249
                     /locus_tag="U1396_000894"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEM5342095.1"
                     /translation="MALFRKKDKYIRINPNRSRIESAPQAKPEVPDELFSKCPACKEI
                     LYKKDLGPEKTCQHCSYNFRITAQERLALTVDDGSFEELFTGIETKNPLDFPNYLEKL
                     AATRQKTGLDEAVLTGKATIGGQPVALGIMDSHFIMASMGTVVGEKITRLFELAIEER
                     LPVVLFTASGGARMQEGIMSLMQMAKISAAVKCHSNAGLFYLTVLTDPTTGGVTASFA
                     MEGDIILAEPQTLVGFAGRRVIESTVRENLPDDFQKAEFLQEHGFVDAIVKRQDLPAT
                     IGRLLRMHGGVR"
     gene            13246..14019
                     /locus_tag="U1396_000895"
     CDS             13246..14019
                     /locus_tag="U1396_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEM5342096.1"
                     /translation="MTSDVARMIRLARDQARLTTLDYATQLFDDFIELHGDRNFRDDG
                     AIVGGIGILAGQPVTVIGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPV
                     VTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD
                     QVWMLENSMYAVLSPEGFASILWKDGSRAMEAAELMKITSYELEKLQVVDKVILENGR
                     ATKEVLADIKENLVSQLAQLQALPLDKLLENRYQRFRKY"
     gene            14083..14556
                     /locus_tag="U1396_000896"
     CDS             14083..14556
                     /locus_tag="U1396_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342097.1"
                     /translation="MLVKADLSNAEELLPIQHRAFAALYKTYQDQYNPAIETMDYFQL
                     RFARPNCSYYKIIEEEHTVGLVRTTVAEDAEQGWLGLIGIDPDHRGKGYGHKAMLELE
                     SLYPTVRRWVLCTVLQESKLVSFYEKLGYKAIKTEPEQEGMDMVYMEKWIGDSDA"
     gene            14549..15181
                     /locus_tag="U1396_000897"
     CDS             14549..15181
                     /locus_tag="U1396_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342098.1"
                     /translation="MLEQCRRYLDYQGVHYCKPEKAGALAGDMIALKNVAQAARKEFQ
                     TLSLVLAEHVSPFVPERVSQWMNQAQICRPHFWTYYRFPSASLTDSALAIRLYGKGTE
                     AGISVEVSFIERKKVETSLLQQNRVLNCSIAAPLYYWVQEGQVFYRLDGTEENRQSLL
                     QAVEAGRIRKVLVKYDVPFRTVASEEELLERLIQGFSLLEPYLKMTHLAK"
     gene            15359..15604
                     /locus_tag="U1396_000898"
     CDS             15359..15604
                     /locus_tag="U1396_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342099.1"
                     /translation="MEKLGQSLKWLGRKIWLLLRIFGLLVLAVLPDLILEGSKSQVTL
                     VIVGLMTLGLLVFFWWRAEKMICQSGTLTFLLGTVWR"
     gene            15625..16017
                     /locus_tag="U1396_000899"
     CDS             15625..16017
                     /locus_tag="U1396_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5342100.1"
                     /translation="MQLTDMLGYYLLELQGVTTTENDASIIEFLKGVPFRLALLTTAF
                     LPAVVEEVIFRGYFFKKLFGSQVLLGIVVSSLVFGSFHGPTDLGSWLIYAGSGIILSL
                     LYYKSRYLIYPIIVHLVNNFIATVFYYI"
BASE COUNT         4532 a         3097 c         3941 g         4462 t
ORIGIN      
        1 aaaaatagct tagaattgca tcgtcagaaa cgttgattct aagctatttt tgtttattca
       61 aattttaatt gctactcaat gaaaattaaa atcagactag ctccaatgga gcttgatact
      121 catcaaatca agtcaacaac gtctggtttt gattttcgaa gagtatgaag agggaactga
      181 ccgacctagt tgtgattatt gctcgttaaa aaaagcttca tagagtgcgt gcagagcgcg
      241 tttcttttct tcggttttga caacgaacat aacagaaact tcactggctc cctgtgaaat
      301 cattgccaag ttgacatttt gtttagagag ggcagtggta gcggtagctg ttacaccgac
      361 atggctcttc atattttcac caacaatcat gataatagat aaaccatgtt cgatttcggc
      421 cttgtcaact tccattttcg tattgagttg acgaaggatc tcttcttctt taataggagt
      481 caattcacgc tcacggacta cgatggataa atcgtcaata ccggtcggca tgtgctccca
      541 gcggatattg agatcttcga gaatttgcaa caccttgcga ccaaaaccaa cttcgcggtt
      601 catcaagtat ttagacaagt taatgctgac aaaaccatcg tctgcagcaa taccgacaac
      661 aggaactgtt tgctcggtat gtttgtgtac aattcgggta ccagggtgag ttgggttatt
      721 ggtgtttttg ataaccaatg gaatccgccc gcgataggca ggaaggaggg cttcatcgtg
      781 gaggacggag aaacctgcat aagctaattc tcgcatttca cgataggtca attctttgat
      841 tgaatgtgga tttttaatga taccaggatg ggcagcaaaa ataccatcga catctgtaaa
      901 gttttcatag aggtcagcct tgactccggc agcaatgatg gaacctgtaa tatccgatcc
      961 acctcgtgag aaggtacaaa tctggttatc aacagttaca ccgaagaatc ctgggataat
     1021 gagtacttca tctgtatcac gaagctcttc gattttgtca taacttgaag gcaaaatgcg
     1081 agcatttcct ggttcggagc tgacaataat accagctttt ttaggatgga catagcgtgc
     1141 gggcaatcct ctgtgggtaa aatattcggc aatcaatttg gcattattat cttcaccagc
     1201 tgctaagaat gcgtcgtaaa ggaattcgtt atcatcaatt ggtaggctgg ccaaagagat
     1261 gatgctgtct gcgattttct tcatgctgtt agctgtgaaa ccaagttcgt caaccattgc
     1321 ctgataacgg ttgatgatcc attcttgact ggcagtcaca tcttttccgt taacatattc
     1381 tttataatat ttaatcaatg catcagtaac tttagtatcc tcggcattgc gttttccagg
     1441 tgcagacacc acaacaaagc gacgttctga atcagattga acaatattga aaactttttc
     1501 taactgttca gctgaagcaa gtgagcttcc cccaaattta ataactttca ttctcatctc
     1561 cttggatatt tttttctatt atagcagaat gatatgaaat tgtcagtatg ttcagacaaa
     1621 tcttgccaag aattttatcg aaaaacgaac aagagacaag tatgaaaatt tcagaaaaac
     1681 atttttttct ttcaactgtg ttacaattaa agtaatagga ggcgagtatg gtaaaagcaa
     1741 ttattttcga catggatggt gtactttttg atacagaaac attctatttt caacgtcgag
     1801 cggatttttt agcgacaaaa ggtttatcgg ttgatcattt ggatccatct atatttgtcg
     1861 gtggaagggc tagtcaaatt tggcaacgga ttttagggga tgattatgat aactgggatg
     1921 tccctgcctt ggaagaggaa tatcgtgtat ataaagaaaa gcgaccaacc ccgtatgcag
     1981 agaggatttt tcctgaagtt aaagcggtct tggagagact aactatccaa ggtattcctg
     2041 tagttttggc ttcaaatacc gaccgttcag aaatcgaacg tgctctacta gatgctggta
     2101 tacgctttca ctttagtcat gttttctcag cgatggattg tgaggcccca aaaccagatc
     2161 ccacagttta tatgaaagca gctagtgcaa caggagtagc taaatcggat attttagtat
     2221 ttgaagatag tgcgaagggg attgaagcgg ctaaaaaagc aggtttgaca gtttgggcta
     2281 ttcgagacca gcattatgga attgatcagt cgaaagcaga caaattggta gacaatcttg
     2341 aagaggcctt tgacttattg cgattttaag aaatgttata ttttagtcca agtattagtt
     2401 ctcggtgaaa aaatggtatt tctagctcag aatccagtta gattttccaa aagtattaac
     2461 gtgaaaaaat gaaagttgta aattaaactt agagcctata tttacagttc agacttgcat
     2521 attgaggttg ttttttcaaa atacagtcag tatttcccgc aaaaactact ttgatgagtg
     2581 aaaaagccaa ggcgctttgc gtgtgaatat aggttcttag acacgttatt ttctagcata
     2641 tctaaatttt atattgcgat gatagccccc atctttttcg gacgtcacac tttacttgct
     2701 agaaaaaaag tgacaattat aaaaactgtg ttacaatgga aaacaagaat ttgaagtttg
     2761 atattcaaat cttttaatta tcaaactatt ttgaaaggag caagagaatg gcctaccaaa
     2821 caattcgtta tgaagtaatt gattccgtag cgattctaac tttaaacaga ccggaagtgg
     2881 caaatggttt taatattcct atgtgtgaag aaatcttaga agcaatccgc cttgcagaag
     2941 gggatgcctc cgtcaaaatt ttacaaattc aagcacaggg ctccattttc tccgtgggtg
     3001 gagatttagt tgagatgaag cgtgcagttg atgatgatga tattgcttct ttggtaaaaa
     3061 tagcagagct ggtgaatgat atttcgtttg cgatgaagaa attgtctaaa gtagtcatta
     3121 tggtgacaga tggggcagtg gctggagccg cggctaatat ggcagtggca gctgattttg
     3181 ttattgcctc cagcaagaca aaattcatcc aagcctttgt aggtgttgga cttgcgccgg
     3241 atgcgggggg gctctttcta ctgagtcgtg ctattggggc taatcgtgct agtcacttgg
     3301 cgatgacagg agagggctta tcagcggata aggctttaga atatgggatt gtttataaat
     3361 tggcagagcc agaaaaacta gaaaagacgg ttgcccaggt cataaaaaaa ctcttgcgag
     3421 gctcagtaaa ctcttatgca gcaatcaaac aactgacatg ggaaagtcaa tttaaagact
     3481 gggagtctta tcgccgattg gagctggatt tgcaagaaac attggcctat aaagaggatt
     3541 ttaaagaggg agttcgagcg catgcagaac gacgtagacc agtgtttacg ggagattaat
     3601 ttttaaatta gtaaaaaaag tttgacaatc aaagttttat ggtttatact ttgactatca
     3661 aagtaaagga ggcctgtttt ggaagatcca aaagtaaatg aatatctaac ggccattttt
     3721 aacaatgtgt tggtgattga agaaacaagt ctgcgtggta gccgattcaa tgatatttca
     3781 attaaggaaa tgcacacgat tgatgtgata ggaagtattg atggagctac tccgagtgat
     3841 gttgctcgga ctttgatggt aaccttaggt actgttacaa ctagcttgaa caatttggaa
     3901 agaaaaggat atgttgagcg tattcgttcg accaaagatc ggcgagttgt tcatctctat
     3961 ctgaccaaaa aaggtcgact ggtctatcgt ttgcatcaac gatttcacaa tgaaatggtg
     4021 aaacagatta cagatggtat ggatgaaaca gagtatcagg taatgaagaa aggactcatg
     4081 aaactctatc acttcttgga ggatttgaaa tgagaaacca tgctaaaatc agtcaggtgg
     4141 cccactatct tccgaagaag attgtgacca atgatgattt ggctcaacga atggagacca
     4201 gtgatgagtg gattcgtagc cgtacaggta tcggtcaacg acacattgtt actggagaga
     4261 cgacgagtga tttggctagt caagtggcta gaaaattact ggaaaagtct cagctagatg
     4321 ctagtgaaat tgatttcatc atcgtagcaa cgattactcc agatgcttca atgccatcta
     4381 cggcagctat ggtccaagca gcaattggtg cgaaaaaggc tttcgcctat gatcttgttg
     4441 cagcttgttc aggatttgtt tttgcgctat caacagcgga aaaattcctt gcttcaggag
     4501 tctataagag aggacttgtc attggtgcag agaccctatc taggtctgtc gactggtcgg
     4561 atcgatcaac ggctgtttta tttggagatg gtgctggagg agttttgctg gaagcgtgcg
     4621 aacaaccgac ctttttagca gaaatcttgc gaacggatgg cggtcgaggt gcgagtctga
     4681 cagcagggat agaccagaaa gagacgccat tctcgacaca aagccgtcaa caacccttta
     4741 tccaaatgga gggcagagct atatttgaat ttgcgacgag ggatgttacg gcaaccatgg
     4801 cagagctgct agaacaagct gatatgactg tggatcgtgt tgattatttc ttgctccatc
     4861 aagccaatat acgtatccta gataagatgg ctcgtaaatt gggagtggtg cgtgaaaaat
     4921 ttccagcaaa tatggataaa tatggcaata ccagcgcagc aagtcttcct attctcttat
     4981 cagaatgtgt agagagcgga atgttacgat tggatggaag ccagactgtt ctcatggctg
     5041 gtttcggtgg aggcctcaca tggggaactc tactattaca actttagtta attccttgcc
     5101 ctaggcaaga ttaaaatatt ttattttcca aaaggagaca catatcatgg cagtatttga
     5161 aaaagtacag gaaatcatcg ttgaagaatt gggtaaggat gctgaagaag taacccttac
     5221 aacaaccttt gaagatttgg acgcagattc attggatctt ttccaagtta tctctgaaat
     5281 cgaagatgca ttcgacatcc aaatcgacac tgaagaaggt ttgactactg taggtgattt
     5341 ggttgcctac gttgaagaaa aaacaaaata atgactgtta aggaaagtgc tatttagcat
     5401 ttttcttaaa ttaaatactt tgataatcaa aacattgaaa tatcaaacta ttttttgagt
     5461 gagggggcaa cccttcactt gtttacctaa tgatttgata ttcaaatgat taggtaagca
     5521 agaaaaaaag atgagggaat tatgaagacg aaaataacag aattgctcga tattaagtat
     5581 ccaatttttc aaggtggtat ggcttgggta gctgatggag atttggctgg tgccgtatct
     5641 aatgcaggtg gtctaggaat catcggtgga ggaaatgctc ccaaagaggt agtcaaggca
     5701 aatattgaca aggttaaatc tatcacggac aaacctttcg gtgtcaatat catgctgttg
     5761 tctccttttg cagatgacat tgttgacttg gtcatcgaag aaggtgtgaa agttgtcact
     5821 acaggagcag gaaatccagg gaagtatatg gagcgtctcc atgctgcagg gattacagtt
     5881 attcctgttg taccgagtgt agcccttgct aaacgcatgg aaaaattagg ggtagatgct
     5941 gttattgctg aaggtatgga agccggaggc catattggta aattgaccac catgaccttg
     6001 gttcgtcagg ttgttgaagc cgtatctatt cctgttattg ctgctggagg tattgcagat
     6061 ggtgcaggtg ctgcggcagc ctttatgttg ggagcagaag cggtgcaagt tggaactcgt
     6121 tttgtagtag ctacagagtc caatgcccat caggcttata aggaaaaagt tttaaaagct
     6181 aaggatattg atacaactgt atctgcttct attgttggac atcctgtgag agccatcaag
     6241 aataagttgt catctgctta tgcagctgca gagaaagatt tcttggcagg taaaatttcg
     6301 gcagatgcta ttgaagaact tggtgcggga gcactccgca atgcagttgt tgatggtgat
     6361 gtaacaaatg gctccgtgat ggcaggtcaa attgctggtc tggtttctaa agaagaatct
     6421 tgtgaagata ttttgaaaga catctattat ggagcagcca aagtgattag agaagaggca
     6481 agccgttggg cttcggttgg agaataggat gacaaagata gcttttcttt ttgcaggtca
     6541 agggtctcag acagtgggga tggctcgcga cctttacgaa tattacccga tagttagaga
     6601 aacgtttgac caggctagtc agattctggg gtatgacatt cgcgacctaa ttgacaaaca
     6661 agaggataaa ttacatcaga ctcgctatac ccaaccggca attttgacaa cttctgtggc
     6721 tatttttcga ctgctggaag aagagggaat acaacccgat atggtagctg gtctatcctt
     6781 gggagaatat tcagctctgg tagcatcggg agctttggcc tttgaagatg cgattgccct
     6841 gattgctaag cgtggtgaat atatggaaac ggctgcgcca gcggggactg gtaagatggt
     6901 tgcggttctc aacacagatg tcaacttgat tgaagaaatc tgttcgactg ttacctctgg
     6961 gattgtttcc ccagccaact acaacacacc agcccaaatc gtcatcggag gcgaggtggc
     7021 tgcagtggat gaggcggttg aattgctaaa ggaagctggt gtcaaacgga tgattccgct
     7081 caatgtatct ggcccctttc acacggctct cttgcgtcca gcttcggagc aattggctca
     7141 ggccttggag caggtggaat ttgcggactt ccaagtagag ttggtcggta atacggaagc
     7201 caaggttatg aaaaaagagg acatcaagtc cctcttgacc cgtcaagtga tggaaccggt
     7261 tcgtttctat gagtcaatcg caaccatgca ggaagctggc gtgactaact ttattgaaat
     7321 cggtccaggt aaagtcttat caggttttgt caagaaaatc gataagaccg cgcatgttgt
     7381 agcaattgaa gacatagagg ggctacaaat agtattgaat aaatcatgag gaggaatcat
     7441 ggaattaaca aataaaaatg tttttgtaac aggttcaagc cgaggaattg gcttggccat
     7501 tgcccataag tttgccagtc ttggtgccaa tgtggtgctg aacggtcgtg gtcagctagg
     7561 ccaggacttg ctggatagct ttgcagatta cggtgtgaaa gtcctagcta tttcaggaga
     7621 tatttcaagc gcggaagatg ccaaacgaat ggtggcagaa gccatcgaaa cactcggtag
     7681 cgtcgatatt ttggtcaaca atgcagggat taccaaggat ggaatggctc ttcgtatgac
     7741 agaagaggat tttgatacgg ttctgaaggt aaatcttact ggaactttta atatgacgca
     7801 ggctgttttg aaaccaatga caaaggctcg tgagggtgct attatcaatc tatcaagcgt
     7861 atctggcttg attggaaatg ctggacaggc caactattct gcttctaagg caggtgtgat
     7921 tggatttact aaagccattg cccgtgaggt tgctgggcga aatgttcgtg tcaatgcgat
     7981 tgcgccgggc tttatccagt ctgatatgac agatgtttta tctgacaaga ttaaagaagc
     8041 tatgactgca caaattccga tgaaacgctt tggtgcgaca gaagaagtag cggatgtagc
     8101 agtgtttctt gccaagcaag aatatctaac tggacaggtg attgcggttg acggcggctt
     8161 gaccatgcag taatccagtc ttccagttta tcttttatta cttcgacgag tgaggaaact
     8221 acgtttccag atttccagct gggagtggga aagaactcga ccaagataaa aagagttcgt
     8281 cttcccaccc ccgcacagtt gattaggcca gatttggagt gcaaaacacg aacaaatctg
     8341 ccaatcaacc actgcgctga gatgttgaca cgaactctga gtagtggtcc tgggcttttt
     8401 gcccagcctc acgatttcca accttcaata gtccactgga ttattgaagc tgtcaacaac
     8461 ttgttgaaat gaactttttc gtagtactaa aagcaaactg aaagactgca ataacgcact
     8521 gtaaattcaa tgttgttttg tgtgttattt taagagaggt ttgaaaatga caaaattaaa
     8581 tcgtgtagta gtaacaggct acggtctgac atctccaatc ggaaatacgc cagaggagtt
     8641 ctgggatagt ttgaaggctg ggaaaattgg gatcggaaag attaccaagt ttgataccag
     8701 tgaatattcg gtccataatg ccgcggaatt aaaagatttt ccttttgaca aatatttcgt
     8761 taaaaaggat acaaatcgct acgataatta ctcgctctat gcactctatg cagctaaaga
     8821 agcgattgct aatgcacagc tggatacaga gacagtggat agtgaccgtt ttggcgttat
     8881 cttatcaaca ggtatcggtg gtatcttgga aattgaagag caagtggctc gtatgaatga
     8941 aaaaggtcca aaacgcattc gtcccatggc tcttccaaag gccctgccaa atatggcggc
     9001 tggaaatatt gctatgcagg tcggtgcaaa tggcgtctgt aagtgcatca tcacagcctg
     9061 cgcttcatca aatgatgctt taggggaagc cttccgtgaa atcaagtttg gtttccaaga
     9121 tgtgatgctg gctggcggag cagaggcagc cattactccc tttgctatcg gtggtttcca
     9181 ggctttgaca gctatgtcga ctactgagga tccagaacgt gcgtctattc catttgacaa
     9241 ggaccgcaat ggttttgtca tgggagaggg ttccgcggtt ttagtattgg aaagtttgga
     9301 acacgcagag gcgcgtggag cgacgatttt ggctgaaatc gttggttatg gaaatacctg
     9361 tgatgcttac cacatgactt ctccacatcc agaaggtctg ggtgctatta aggccatgaa
     9421 gttggccatt tcagaagcag gtttggagcc agctgatatt gactacatca atgcccatgg
     9481 gacttcgaca ccggctaatg aaaaagggga aagtcaagct atcgtatctg tcttcggcaa
     9541 gaacacgcca gtttcttcta ccaagtcctt cactggtcac ttgttgggtg cagcgggtgc
     9601 cgttgaagcg gcagctgtca ttgaggctat gcgtcattct tacgcaccaa agacagctgg
     9661 tacgacagaa ttatctgaag atattgaagc ggatgtcatt tatggacagg ggcgtgatat
     9721 ggaaatccgc catgccattt caaatacatt tggctttggt gggcataatt cagtcatcgc
     9781 tttcaaacgt tgggaggcct aagtgaatat tacagaaatt aaggacctga tgagtcagtt
     9841 tgaccagtca agtttgcgag aattttcgta tagcaatgct ggggagacct tgcatttcag
     9901 taaaaaccag caggcgacag tggctccgag tccagcggta gaagctccgc ttgccccagt
     9961 aactcctgca agcccagccc ttgtgccagc agttgaaatg agtgagccag ctccagcaga
    10021 agcaggtgcc agccccgtgg cagaaggtgc ggtagtggaa agccccttgg tcggcgtggc
    10081 ttatttgtcc ccagcccctg acaagccagc atttgtagcg gtcggcgata cggtcaaaaa
    10141 aggccagacc ctcatgatta tcgaagctat gaaagttatg aacgaagtac cagctgaccg
    10201 tgacggcgta gttacagaaa ttttggtggc caaccaagat gttgtagaat ttggacaagg
    10261 attggtacgc atcaaatgat tgatattgta aaaattaaag aggctcttcc tcatcgctac
    10321 cctatgctct tggtcgatcg tgtccttgaa gtatcggaag atgagattgt cgccctcaaa
    10381 aatgtgacca ttaacgagcc cttcttcaac gggcatttcc cagactatcc tgttatgcca
    10441 ggtgttctca tcatggaggc cttggcacaa accgcaggtg tcttggagtt gtctaaggaa
    10501 gaaaacaagg gcaagctggt tttttatgcc ggcatggaca aggtcaaatt taagaagcaa
    10561 gttgtacctg gtgaccagtt gatcatgacc gctacatttg tcaaacgccg tggaaccatt
    10621 gcggtcgttg aagcaaaggc agaggtggat ggaaaactgg ctgcgtcggg ggtactaacc
    10681 tttgccattg gaaaataaat cagttctcca ttttatcttt tattgcgtcg acgaacgagg
    10741 aaacttcgtt tccttatttc caacttcaaa taatttcatc attatttgaa ctcgttttgc
    10801 cgtacccaag tactgtctac aacaattgat acgaatttta ttcgtctcat ttccaacctc
    10861 caaaggtttc ccaaaccttt ggagcaagca ctaaaagtaa aatgaagaac tgctattgat
    10921 aaccattatt taatattctc atcttgagat tgttataaca attattctat gttaaaaagg
    10981 agataggatt catcatgttt gagaagattt tgattgccaa tcgtggtgag attgcggtgc
    11041 ggatcattcg tgcggccagg gaattaggga ttgcgacggt ggctgtctat tcagaggcgg
    11101 acaaggaagc tctccacacc atgttggcag atgaggctgt ctgtatcggc ccggcccgtt
    11161 cgacagactc ctatctcaat atgcaggctg ttatctcggc ggctgttgtg acaggtgccc
    11221 aggctattca tcctggcttt ggatttttga gtgaaaactc taaattcgcc accctctgtg
    11281 aagaggtcgg tatcaagttt atcggacctt ctgggacggt catggatacc atgggcgata
    11341 aaatcaatgc tcgggcagag atgattaagg ctcaagttcc tgtcattcct ggatcagacg
    11401 gcgaagtttt gaccagccaa gaagctcttg caattgctga aaagattggt taccctgtca
    11461 tgctcaaagc atcggcagga ggtggcggta aggggattcg taaggtggaa aaagctgaag
    11521 acctagtgcc tgcctttgaa tcagcttcca gcgaagccaa ggcagccttt ggcaacggag
    11581 ccatgtatat ggagcgtgtc gtctatccag cccgccacat cgaagtacag attttggcgg
    11641 accagcacgg tcatgtcatt catctgggag aacgggattg ttcccttcaa cgcaacaatc
    11701 aaaaggtctt ggaagaagct ccgtcgattg ctatcggcca gaccatgcgg gaacgtatcg
    11761 gtcaagcagc agtgcgggct gcccagtcag ttggttatga aaatgcgggg accattgagt
    11821 ttctcttgga tgaagccaag ggcgaatttt acttcatgga aatgaacaca cgggtgcagg
    11881 tagaacatcc tgttaccgaa tttgtcactg gtgtggatat tgtcaaggag caaatcaaga
    11941 ttgcggctgg tcaggaactc agtgtccgcc aagaagatgt gcggattaca ggtcatgcca
    12001 ttgaatgccg catcaatgct gaaaatccag ccttcaattt tgccccaagt ccaggtaaga
    12061 tttccaatct ctacctacca agcggtggcg ttggtctacg tgtagattca gctgtttacc
    12121 caggctacac cattccgcct tactatgatt ccatgattgc caaggtcatc gtgcatgggg
    12181 aaaatcgctt tgaagccctg atgaagatgc aacgggccct ctatgaattg gaaattgacg
    12241 gagtggtgac caataccgac ttccagctgg acttgatttc cgacaagcga gtggtggctg
    12301 gtgattatga cactgcctac ctcatggaag aatttttacc ccgctatcaa gaagatctaa
    12361 aaaagtaaac taggagaatg ctatggcttt gtttcgcaaa aaggacaaat atattcgcat
    12421 caatcccaat cgttcgcgga tagagtcagc acctcaagca aagccagagg tgccagatga
    12481 actcttttcg aaatgtcctg cttgtaagga aatcctctac aagaaggact tgggaccaga
    12541 gaaaacctgt caacactgtt cctataattt tcggattacg gcccaggaac gcttggcttt
    12601 gacagtggat gacggttcgt ttgaggaatt gtttacaggg attgaaacca aaaatccctt
    12661 ggacttcccc aattatttag agaaattagc agccacccgt caaaaaacag gcttggatga
    12721 agctgttttg acaggaaagg cgacaatcgg cggtcaacca gttgcccttg gcatcatgga
    12781 ttcgcacttt atcatggctt ctatgggcac ggtggtcggt gagaaaatta cccgcctctt
    12841 tgagttggcg attgaagagc gtttgccagt tgtcctcttt accgcatctg gtggtgctcg
    12901 catgcaggaa ggcattatga gtctgatgca aatggccaag atttctgcag cagtgaaatg
    12961 ccattccaat gctggcctct tttacctgac ggtcttgaca gacccgacaa caggaggtgt
    13021 tacggctagt tttgccatgg aaggcgatat tatcctggct gagccgcaga ccttggttgg
    13081 ttttgcagga cgacgggtta ttgagtcaac tgtgcgtgaa aatctgcctg atgatttcca
    13141 gaaggctgaa tttttacaag aacacggctt tgtcgatgcc attgtcaaac gccaggactt
    13201 gccagcgacc attggtcgct tgttgagaat gcatggaggt gtcagatgac cagtgatgta
    13261 gcacgtatga tccgtttggc acgtgaccaa gctcgcctga cgaccttgga ctatgccaca
    13321 cagctctttg atgactttat cgaattgcac ggcgatcgca atttccgtga tgatggagca
    13381 attgtcggtg gaattggcat tttagcaggt cagcctgtga cagttatcgg tatccaaaaa
    13441 gggaaaaatc ttcaggataa cctcaaacgc aactttggtc agccccaccc agaaggctac
    13501 cgcaaggccc ttcgcctcat gaaacaggcg gagaagttcg ggcgtcccgt tgtcaccttt
    13561 atcaatactg ctggagccta tcccggtgtc ggtgccgagg agcgtggaca gggtgaggcc
    13621 attgcccgca acctcatgga gatgagtgac ctcaaggtgc ctattatcgc tattatcatc
    13681 ggcgagggcg gctctggtgg agctctggct ctagcggtgg cagatcaggt ctggatgctg
    13741 gaaaactcca tgtacgccgt cctcagcccc gaagggttcg cgtctatcct ctggaaagac
    13801 ggcagtcggg ccatggaggc ggcagaactc atgaagatta cctcctatga gttggagaag
    13861 ctccaagtgg tcgataaagt tattttggaa aatggcagag cgaccaagga agtcttggct
    13921 gacatcaagg aaaacctggt cagtcagttg gctcaactac aagccttgcc acttgataaa
    13981 ttgctcgaaa accgctatca acgctttaga aaatactagg aagacctagt atttttttgc
    14041 tagatttgat acaatggata aaatcatttc aggaggtttt ccatgttagt aaaagcagat
    14101 ctatcaaacg cagaagaatt gctacctatt cagcaccgag catttgcggc tttatataaa
    14161 acctatcagg accagtacaa ccctgccatt gaaactatgg actatttcca attacgcttt
    14221 gcacgaccaa attgtagcta ttacaagatt atcgaggaag agcacacagt cggactagta
    14281 cggacaacgg tcgctgaaga cgctgaacag ggctggctag gcttgattgg tattgatcca
    14341 gaccacagag gaaaaggcta tggtcacaag gctatgctcg aattggaaag cctttatccg
    14401 acagttagac gctgggttct ctgcacggtt ttgcaggagt ctaaattagt ttctttctac
    14461 gaaaagctcg gctacaaggc catcaaaaca gagcctgaac aagaaggcat ggatatggtc
    14521 tatatggaga agtggatagg agattcagat gcttgaacag tgtcgcagat acctggatta
    14581 tcaaggagtt cattattgca agcctgaaaa agcaggagct ttggcaggcg atatgatagc
    14641 cttaaaaaat gtagcacagg cagcacgcaa ggagtttcag acattaagtt tagtcttagc
    14701 tgagcacgtc agtccctttg tgcctgagag ggtcagtcaa tggatgaatc aagcccaaat
    14761 ttgcagacca catttttgga cctattaccg ttttccctct gctagtctaa cggactcggc
    14821 tcttgctatt cgtttgtatg gtaagggaac tgaagcgggg atttcagtag aagtcagttt
    14881 tattgaacga aagaaagtgg agacctctct gcttcagcaa aatcgtgttc tgaactgctc
    14941 gattgcggca ccgctttatt attgggtgca agagggacag gtattttatc gcctggatgg
    15001 aacggaggag aatagacaga gcctattaca agccgttgaa gcaggacgga ttcgtaaagt
    15061 attggtcaag tatgatgtac cgtttagaac cgttgcctcc gaggaggaac tgctggaacg
    15121 cttgattcag ggcttttctc tactagagcc ctacttgaag atgacacacc tcgctaaata
    15181 atcagtgggg tgatggcaac aaacatcgta agggtatttg ttttttagtg tatattgaca
    15241 aattcattga atttttgtaa aactgtatcg caacaacaga acagtttgat tgacattacg
    15301 tgaaatccta taatagattg aaggcactct atatgatgaa gcggaagagg agaagagtat
    15361 ggagaaacta ggtcaaagtt tgaaatggct tggtcggaag atttggctat tattaaggat
    15421 ttttggtctc ttagtgcttg ctgtccttcc agatctgatt ttggaagggt ccaaatcgca
    15481 agtcaccttg gtaatagttg ggctgatgac gcttggactt ttggtctttt tctggtggcg
    15541 ggctgaaaaa atgatctgtc agtctgggac cctaacattc ttacttggga cggtctggcg
    15601 atagttatat tagcctttgc tatcatgcag ttgacggata tgcttggtta ttatttgttg
    15661 gaattgcagg gtgttaccac aacagaaaac gatgcttcga ttatagaatt tttgaaggga
    15721 gttcctttta gactggcact cttgacaaca gcatttttgc cagcagttgt agaagaagtc
    15781 atatttcgag gctacttctt taagaaatta tttggatcac aggttttgtt aggaatagtt
    15841 gtttcaagcc tcgtttttgg ctcctttcat ggtccaacag acttaggctc ttggttgatt
    15901 tatgctggca gtggtattat tttgtctctc ctctattaca agagtagata cttaatctat
    15961 ccaataatcg tacacttggt gaacaatttc attgcaacag ttttttacta tatataagaa
    16021 aagacggttc ca
//
LOCUS       DASGBY010000037        15840 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.037, whole genome shotgun sequence.
ACCESSION   DASGBY010000037 DASGBY010000000
VERSION     DASGBY010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15840
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.037"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            66..1082
                     /locus_tag="U1396_000900"
     CDS             66..1082
                     /locus_tag="U1396_000900"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM5342101.1"
                     /translation="MTKQTIAILGPGSWGTALGQVLNDNGHTVRIWGNVPEQIDEINK
                     EHTNKRYFKDVILDENIKGCKDLTEALDGVDAILFVVPTKVTRLVAKQVAQALKHKVV
                     VMHASKGLEPDSHKRLSEVLEEEIPAELRSEIVVVSGPSHAEETIVRDLTLISAASKD
                     LETASYVQNLFSNHYFRLYTNNDVIGVETAGALKNIIAVGAGALHGLGYGDNAKAAII
                     ARGLTEITRLGVAMGANPLTYSGLSGVGDLIVTGTSVHSRNWRAGDQLGRGEKLEDVE
                     RNMGMVIEGISTTKAAYELAQELDVYMPITQAIYKVIYQGAGIEDAIKEIMTGEFRHE
                     NEWH"
     gene            1128..2027
                     /gene="galU"
                     /locus_tag="U1396_000901"
     CDS             1128..2027
                     /gene="galU"
                     /locus_tag="U1396_000901"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEM5342102.1"
                     /translation="MKKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEE
                     ALRSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNDLLKLVDETTGIRLHFIR
                     QSHPRGLGDAVLQAKAFVGNEPFVVMLGDDLMDITDTKAVPLTKQLMNDYEKTHASTI
                     AVMPVPHEEVSAYGVIAPQGEGVNGLYSVETFVEKPKPEDAPSDLAIIGRYLLTPEIF
                     EILENQKPGAGNEIQLTDAIDTLNKTQRVFAREFKGNRYDVGDKFGFMKTSIDYALQH
                     PQVKDDLKQYLIDLGKKLDTKKN"
     gene            complement(2046..2723)
                     /locus_tag="U1396_000902"
     CDS             complement(2046..2723)
                     /locus_tag="U1396_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM5342103.1"
                     /translation="MKNFFDKRYPVTNALLAVTALVFLLIQIFRFGQTTTAYTIFEFG
                     GMYGQVVRYDPTQLWRLISPIFVHIGWEHFIFNSITLLGLGYQLEGLFGSRRFFLLYL
                     LSGIMGNLFVLFFTPDVVGAGASTSLFGLFAAMALLRKFSRSPYLQVLGQRYMVLLGL
                     NLVLGLFNPTISMAGHIGGAIGGCLVVIFLPPLVEKDLFTGKQIFFSFIGYMSLIVFL
                     LGIFYLI"
     gene            complement(2707..3249)
                     /locus_tag="U1396_000903"
     CDS             complement(2707..3249)
                     /locus_tag="U1396_000903"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEM5342104.1"
                     /translation="MDKKEIRQEVLQRLKALTSSQRARWSQQLTERLLSSDTYKCSKS
                     LGTYLSMPHEFDTSYLIEQAQKDGKQIFIPKTYSQGRMDFVEYNPDDLMKSRFGVWEP
                     GTYSQPVDKSVVKLIHVPGLAWNQAGFRVGYGGGFYDRYLADYQGETVSTLADFQVYD
                     FEPDVFDIPVKELLIFEELF"
     gene            complement(3291..4418)
                     /locus_tag="U1396_000904"
     CDS             complement(3291..4418)
                     /locus_tag="U1396_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HEM5342105.1"
                     /translation="MLDLIATRRALHQIPELGMEEFKTHAFLMETIENLLEDCSFAQV
                     RTWKTGILVYLTGSAPEKTIGWRADIDGLPIVEETELGFKSLHPDRMHACGHDFHMTI
                     ALGLLEKMAEQQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLK
                     VGQMATNRATLFAGTCEVKIRFTGKGGHAAFPHTANDALVAASYFVTQVQSVVSRNVD
                     PIEGAVVTFGSMHAGTTNNVIAETAFLHGTIRALTQNMSLLVQKRVREVAEGIALSFG
                     VDLEIELNPSGYLPVENNPQLADELMTYFDGVDGVEMIDCPPAMTGEDFGYLLNKVPG
                     VMFWLGVDTPYPLHNPRLSPKEEVLPFAVDKLSDFLKMKAN"
     gene            complement(4428..5126)
                     /gene="dapD"
                     /locus_tag="U1396_000905"
     CDS             complement(4428..5126)
                     /gene="dapD"
                     /locus_tag="U1396_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HEM5342106.1"
                     /translation="MTAQKMTAQEIIAFIGNAVKKTTVKVTFEGELAGPVPAEVTKLG
                     NVLFGDWKDVEPLLTNLTENVDYVVEQDGRNSAVPLLDKRNINARIEPGAIIRDQVTI
                     GDNAVIMMGAVINIGAEIGPGTMIDMGAILGGRATVGKNSHIGAGAVLAGVIEPASAE
                     PVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARIIKEIDAQ
                     TQQKTALEEALRTL"
     gene            complement(5283..5816)
                     /locus_tag="U1396_000906"
     CDS             complement(5283..5816)
                     /locus_tag="U1396_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342107.1"
                     /translation="MKKKWLLIFSALLTVTSLVACSNSKEETTSKSSSTEQTSTTKSS
                     TKESTSESSTVTLKESTVTYLADAEIDAIQTIGEYKTSLNSLMDSYVADFDGLIVQLP
                     EEAQTTLKPYREQIVTMLEQQKSALDSQFATLGDDSTVIPEEARATVLDSLKTVRVQL
                     KQTMTVVHEQAQTLLNE"
     gene            complement(6131..6859)
                     /locus_tag="U1396_000907"
     CDS             complement(6131..6859)
                     /locus_tag="U1396_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEM5342108.1"
                     /translation="MKKDFFVIGDVHGKFELLLDILKKWNEERQQLIFLGDLIDRGEN
                     SKACLELVWQLVREKDAICLTGNHERMFLAWLRDPLERYDHYRRNGGDTTINSLLGRP
                     LDAPVDGLVDANAVMEQYEKLIDFVKSCPYHLETEGYIFVHAGVDLTLPDWRKTSNHD
                     KVWLRTPFHEAENTTGKMIVFGHTPVYNLYQTKLRISQIWTSSDGKMGIDGGAVYGGV
                     LHGLVLNQQGLVRDYAVGCMESTQ"
     gene            complement(6925..8274)
                     /locus_tag="U1396_000908"
     CDS             complement(6925..8274)
                     /locus_tag="U1396_000908"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM5342109.1"
                     /translation="MTHITFDYSKVLGQFVGAQEVEYMQPQVTLADQMLRQGTGPGSD
                     FIGWLDLPENYDKEEFARIKEAAAKIQNESEVLVVIGIGGSYLGAKAAIDFLSNAFVN
                     LQTREERKAPQILYAGNSISSSYLADLVDYVADKDFSVNVISKSGTTTEPAIAFRVFK
                     ELLVKKYGQEEANKRIYATTDKAKGAVKVEADANGWETFVVPDDVGGRFSVLTAVGLL
                     PIAAAGADIDALMEGANAARTTFTSDKIAENQAYQYAAVRNILYRKGYVTEILANYEP
                     SLQYFSEWWKQLAGESEGKDQKGINPTSANFSTDLHSLGQFIQEGNRNIFETVVRVDK
                     PRKNILIPDMAEDLDGLGYLQGKDVDFVNKKATDGVLLAHTDGGVPNMFVTLPQQDEF
                     TLGYTFYFFELAIAISGYLNAINPFDQPGVEAYKKNMFALLGKPGFEELGAELNARL"
     gene            complement(8356..8898)
                     /locus_tag="U1396_000909"
     CDS             complement(8356..8898)
                     /locus_tag="U1396_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342110.1"
                     /translation="MFLFAFPGMGKTTLAKKYTDVVDLEMSDIKYDNSSVRHLTKEER
                     KSTKRTLKDKGYKTIYVNKAYTLHRQGKTVLVALNFLMRMLLAMSIRGGVPFHIYIPH
                     PSLKEEYRQRYISRGNNDRFIFEVMFIWYPALIPLYLLSKILPKWITVTQSGETLEDY
                     YKRENFVRFSQKLRFIQHIS"
     gene            complement(9038..9127)
                     /gene="ffs"
                     /locus_tag="U1396_000910"
     ncRNA           complement(9038..9127)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="U1396_000910"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(9170..9691)
                     /gene="tadA"
                     /locus_tag="U1396_000911"
     CDS             complement(9170..9691)
                     /gene="tadA"
                     /locus_tag="U1396_000911"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEM5342111.1"
                     /translation="MNYTHEEKEYFMTQALQEARKSLEKDEIPIGCVIVKDGQIIGRG
                     HNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPCVMCSGAIGLARIPQV
                     IYGATNKKFGAAGSLYDILTDERLNHRVKVETGILEAECANIMQDFFRQRRERQKAAK
                     LIMKTQEEATSDS"
     gene            complement(9971..11941)
                     /gene="tkt"
                     /locus_tag="U1396_000912"
     CDS             complement(9971..11941)
                     /gene="tkt"
                     /locus_tag="U1396_000912"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM5342112.1"
                     /translation="MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELR
                     INPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFEEVSMDEIKNFRQWGSKTPGHPEF
                     GHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
                     VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGT
                     DVDAIFAAIEKAKAAGKPSLIEIKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALD
                     WNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPELAAEVTAILEGRDV
                     VEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQ
                     DSVNPLNRNIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGL
                     PVTYVFTHDSIAVGEDGPTHEPIEHLAGLRAMPNLNVFRPADARETQAAWYLSLTSKS
                     TPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEVAGFDTILLASGSEVNLAVKAAKELE
                     AAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVL
                     GIDTFGASAPAQTVIDNYGFTVENVVKLVGEL"
     gene            complement(12153..13244)
                     /gene="ulaG"
                     /locus_tag="U1396_000913"
     CDS             complement(12153..13244)
                     /gene="ulaG"
                     /locus_tag="U1396_000913"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HEM5342113.1"
                     /translation="MAKVQDITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     NCGVWIKTPGGANVVMDLWSSRGKSTKKVKDMVWGHQMANMAGVRKLQPNLRVQPMVI
                     DPFAINELDYYLVSHVHSDHMDISTAAAIINNPKLDHVKFVGPVESGDIWEKWGVPAD
                     RIIRIAPGDSFEFKDIKVHAVESFDRTCLVTLPIEGYDENGGKLAGLPVTDELMARKA
                     VNYVFETPGGTIYHGADSHFSNYFAKHGRDFNIDVAINNYGDNPIGIQDKMTSIDLLR
                     MAENLRAKVIIPVHYDIWSNFMASTDEILQLWKMRKERLQYDFHPFIWEVGGKYTYPM
                     DKDRIEYHHPRGFDDCFLEDSNIQFKALL"
     gene            complement(13354..15042)
                     /locus_tag="U1396_000914"
     CDS             complement(13354..15042)
                     /locus_tag="U1396_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM5342114.1"
                     /translation="MLLDKSSCALLRYLIGLQEPETIMAISKGLQQSRRKIYYHLEKI
                     NDALPTTVESIESLPRLGIRLTEAQKLACRDLLDSIDSYTYVMSMPERIQLMLVYICI
                     TPERVTIERLMELTEVSRNTVLNDLNEIRTQLAQEQYKMTLYVSKSHGYSLVCHPLNK
                     IQYVHSLLYTIFLDANKGFLQVLEDKLFELVGCQLLFSEEMAQFLQGQVSQLEKKLGK
                     KINRYEIEFMLKVLPFLLLSYRNMELDDLEERAILKEFEQVRERIEYRVAQELKDALL
                     QTFDLKLDEIEISLIAILLLSYRKDSDVHVFSQDFIDLKRVVERFIHHFEIHSPFELE
                     NPDELAKHLLAHCKALLFRKTYGILSKNPMVQQIQDKYSTLFAMTRVSGKILEEEWQI
                     ELSDGDIAYLTIHLGGAIRRSGTRKAQTQIVYLICDEGVSVQRLLYKQCQHHLPDKKI
                     GAVFTTEQFKSVEDLLEVDFLITTSDGLETDFPLVQVHPILDFDDVLNMTHFAKYRSL
                     ADEKQVFAVELDKLLSGYIADGRTARELKQRLQKLITNELLTNLSSQDIETDLY"
     gene            complement(15167..15784)
                     /locus_tag="U1396_000915"
     CDS             complement(15167..15784)
                     /locus_tag="U1396_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342115.1"
                     /translation="MRKFLQDSLTETAYYLELILSAILGLALLALSTLLFADLLSSLA
                     GDIQADTFIQNFLSRAMTLAVGVEFIKMLYKQSPSTVIEVLLVAIARQLIVEHGSSSD
                     YLIGIISVAILFAVRKYLFTQFDDSNNIIMRASQKVKVANIIARVKIPSEGSETLRDF
                     VTRKLNEEEKTIAIGACVYLKNVALRIDNMHGELITRVEIIKSIY"
BASE COUNT         4518 a         3584 c         3176 g         4562 t
ORIGIN      
        1 ataagatttt atgtatcaat tatggtataa tatatctaaa ttacaccaac tagaaaggat
       61 tttttatgac caaacaaacc attgccatct tgggacccgg ttcatggggc accgccctag
      121 gacaagttct caacgacaac ggtcatactg tccgtatttg gggaaatgtc cccgaacaaa
      181 tcgacgaaat caataaagaa catacaaata agcgctattt caaggatgtt atcctagatg
      241 aaaacatcaa gggctgtaag gatttgactg aagccttgga cggtgttgac gctattcttt
      301 tcgttgtacc aaccaaggta acacgtctcg ttgccaagca agtcgcacaa gctctcaaac
      361 acaaggtagt tgtcatgcac gcttcaaaag gcttagagcc tgatagtcac aagcgcttgt
      421 ctgaggtact ggaggaagaa attcctgctg aactccgttc tgaaatcgtc gtggtttcag
      481 ggccaagtca tgcagaagag actatcgtcc gtgatttaac cttgatttct gcagcttcaa
      541 aagacttgga aacagccagc tacgtccaaa atcttttcag caaccactac ttccgacttt
      601 atacaaataa tgatgtcatc ggtgtagaaa cagcaggtgc ccttaaaaat attattgctg
      661 tcggcgctgg cgctttacac ggacttggtt atggtgataa tgccaaggca gctattatcg
      721 ctcgcggttt gacagaaatc acacgtctag gcgttgctat gggcgcaaat cctctgactt
      781 acagcggtct ttctggtgtt ggtgatttga ttgttaccgg tacatctgtc cactcccgca
      841 actggagagc tggagatcag ctcggtcgcg gtgaaaaact cgaagatgta gaacgcaata
      901 tgggaatggt gattgaaggt atttcaacaa ctaaggcagc ctatgagttg gctcaagaat
      961 tagatgttta catgcctatt acccaagcca tctacaaggt catctaccaa ggtgcaggta
     1021 ttgaagatgc catcaaagaa atcatgacgg gtgaattccg ccatgaaaat gaatggcatt
     1081 gattcttatt aaacacaaaa aaataaatta taaaggatta catacttatg aaaaaagtta
     1141 gaaaagctgt tatcccagct gcaggtttgg gaacacgttt cttgcctgct actaaggctc
     1201 ttgccaagga aatgttgcca atcgttgaca agccaaccat ccaatttatc gttgaagaag
     1261 ccctccgttc aggtattgaa gatattttgg tggtcactgg taagtcaaaa cgttctatcg
     1321 aagaccactt tgattcaaac tttgaattgg aatacaacct caaagaaaaa ggcaaaaatg
     1381 atttgttgaa actggttgat gagacaacag gtattcgact acacttcatt cgtcaaagcc
     1441 atccacgtgg acttggggat gctgttcttc aagcaaaagc ctttgtcgga aatgagccat
     1501 ttgttgtcat gctcggcgat gacttgatgg acatcacaga tacaaaagct gtcccattga
     1561 ccaagcaact catgaacgac tatgaaaaaa cacatgcttc aaccattgct gttatgcctg
     1621 ttcctcatga agaagtttct gcatacggtg ttatcgctcc acaaggtgaa ggtgtcaacg
     1681 gtctctatag tgtggaaacc tttgtggaaa aaccaaaacc agaagacgct ccttctgacc
     1741 ttgctattat cggacgctac ttactcactc ctgaaatctt tgagatttta gaaaaccaaa
     1801 aaccaggtgc cgggaacgag attcaattga cagatgccat tgatactctg aacaaaacgc
     1861 aacgtgtttt cgctcgtgaa ttcaaaggca accgttacga tgttggggat aagttcggtt
     1921 tcatgaaaac ttctatcgac tacgccctcc aacaccctca agtaaaagat gatttgaaac
     1981 aatacttaat cgatcttggt aaaaaattag atacaaagaa aaactagcaa tcgctagttt
     2041 ttttcttata tcaaatagaa tatccctagt agaaaaacga tcaagctcat atagccaatg
     2101 aagctgaaaa aaatctgttt tcctgtaaag agatcctttt ccacaagagg gggaaggaaa
     2161 atcacgacca aacaaccacc aatagctcct ccaatatgtc ctgccatgct aatggttgga
     2221 ttaaaaagtc ccaagaccaa gttcaatccc aaaagaacca tataacgttg accgagaacc
     2281 tgtagataag ggctgcgact aaatttcctc aaaagtgcca tagctgcaaa aagaccaaac
     2341 agagaggtcg atgcacctgc accaactaca tctggtgtaa agaagagaac aaaaagattg
     2401 cccattatcc cagacaagag atagaggaga aagaagcgcc gtgacccaaa cagtccttct
     2461 aattgataac ccaaaccaag caaggtaatg ctgttaaaga taaaatgttc ccaaccaatg
     2521 tggacaaaga taggagaaat caagcgccac aactgagtcg gatcatacct caccacttga
     2581 ccgtacatac caccgaattc aaaaatcgta taggctgtag tggtctgccc aaatcgaaat
     2641 atttgtatca aaagaaaaac aagagccgtg actgccaaca aggcattggt cacaggatag
     2701 cgcttatcaa aaaagttctt caaaaatcaa caactccttt actggaatat caaatacatc
     2761 tggttcaaaa tcatagactt gaaagtctgc caaggtcgat accgtctccc cttgataatc
     2821 tgctaggtag cgatcataaa aaccgcctcc ataacccact cgaaaacccg cttgattcca
     2881 agctaaacca ggaacatgga tcaacttaac cacagactta tccacaggtt gtgaataagt
     2941 cccaggttcc caaactccaa acctagattt catcaaatca tcaggattat attctacaaa
     3001 atccatacga ccttgtgaat aggtcttagg gatgaaaatc tgcttgccat ccttttgagc
     3061 ctgctcaatc aggtaagaag tgtcaaactc atggggcatg gaaaggtagg ttccaagcga
     3121 ctttgagcac ttataggtat cagatgaaag gagcctttct gttagttgct gactccatct
     3181 tgctcgctgg ctactagtca gggctttcaa tctctgcaag acctcttgtc gaatttcttt
     3241 tttatccaca ggaactcctt tcttttcaga aaaagactgg aaactacagt ctagtttgct
     3301 ttcattttca aaaaatcgct caacttatcc acagcaaagg gaagcacttc ctctttggga
     3361 ctgagacgtg gattgtgaag gggataaggc gtatccacac ccaaccagaa cataacaccc
     3421 ggaaccttgt taagcaggta gccgaagtcc tctcccgtca tggcaggtgg acaatcaatc
     3481 atctccactc cgtcaacacc atcaaagtag gtcatcagtt catcagccag ctggggattg
     3541 ttctccacag gcagataacc gctaggatta agctcgatct ccaagtccac tccaaaggac
     3601 agggcgattc cctcggccac ttcccgcacc cgtttttgca ccaagaggct catgttctga
     3661 gtcaaggccc gaatggtccc gtgcaaaaag gccgtttcag caatgacatt gttggtcgtg
     3721 ccagcatgca tggagccgaa ggtcaccacc gctccctcga tcgggtcaac gttacggctg
     3781 accaccgact gcacctgagt cacaaagtag ctggctgcca ccaaggcgtc attggcggta
     3841 tggggaaatg ctgcgtggcc accctttcct gtaaaccgta tcttgacttc acaggttcca
     3901 gcaaagaggg tcgcacggtt ggtggccatt tgaccgactt tgaggtcagg tcggacatgg
     3961 agcccataaa attcatctgg caaccaatcc ccgaaagccc ccgcttcata cataagcata
     4021 ccacctgcta gattttcctc cgcaggctga aacaagaaga gaagattatt tctcggttgc
     4081 tgctctgcca ttttctccaa aagccccagg gcaatggtca tgtggaaatc atgtccgcag
     4141 gcgtgcatcc ggtctgggtg gagggacttg aagcccagct ccgtttcttc cacgataggc
     4201 aggccgtcaa tatctgcccg ccagccgatg gtcttttcag gagcagaacc tgtcagatag
     4261 accaggatac ctgtcttcca tgtacggact tgggcaaaag agcaatcttc caacaagttc
     4321 tcaatagttt ccataagaaa ggcgtgtgtc ttgaactcct ccatacccag ctctggaatc
     4381 tggtggaggg cccggcgtgt cgcgattaaa tctagcatag ctacctctta gagtgtccgc
     4441 aaagcctctt ccaaggctgt tttttgttgg gtttgagcgt cgatttcctt gatgatgcgg
     4501 gctggcacac ctgccaccac tacgttttca gggacgtctt gggtcacaat agcaccggct
     4561 gcgacaacag agccactacc gatttgtact ccctcgatga caacggcatt ggcaccgacc
     4621 aaaacattgt cgccaacacg cactggctca gccgaagctg gctcgataac acctgcaagg
     4681 accgcacctg caccgatgtg gctgttttta ccaaccgtcg cacgaccacc aaggatagca
     4741 cccatgtcaa tcatggtacc tgggccgatt tccgcaccga tattaatgac cgcacccatc
     4801 atgataacgg cattatcacc gattgtcact tggtcacgga taatggcacc tggctcgata
     4861 cgggcattga tgttacgttt gtctagcaaa ggcacagccg aattgcggcc gtcttgctca
     4921 accacgtagt ctacattttc agtcaagttt gtcaaaagtg gctcgacgtc tttccagtca
     4981 ccaaagagga cgttgccaag ttttgtcact tctgcaggaa caggaccagc caattcacct
     5041 tcaaaagtca ctttaacagt tgtctttttc accgcattac cgataaaggc aatgatttct
     5101 tgtgcagtca ttttttgtgc agtcataatg attccaatct aaaaataata ttttttctat
     5161 tatatcaaaa ttttctgaaa atttgggaag aaatgcaaaa aaatggaaaa gaggccctca
     5221 gttcccaatg ttattaagtt agctaactta ataacattgg gcaggagcca aatctttctc
     5281 tgttattcat ttaataatgt ttgtgcctgt tcatgcacaa ctgtcatcgt ttgttttagt
     5341 tgaacacgaa ctgtttttaa actatccaaa acagtagctc gtgcttcttc tggaatcact
     5401 gtcgagtcat cccctaatgt cgcaaattgt gaatctagtg ctgatttttg ttgttcaagc
     5461 atcgttacaa tttgctcacg atatggtttt aaagtagtct gtgcttcttc tggtaactga
     5521 acaattaacc catcaaagtc agcaacataa gagtccatca atgagttcaa tgatgtttta
     5581 tattctccga tagtctgaat cgcatcaatt tctgcatctg ccagataagt cactgttgac
     5641 tcttttaaag taacagtcga ggattcagat gtagactctt tagtagagga tttcgttgtg
     5701 gatgtttgtt ccgttgaaga gctttttgac gttgtttctt ccttactatt agagcaagcc
     5761 accaaactag taactgttag aagagctgag aaaatcagca accatttctt tttcattata
     5821 aaactccttt tgtttattac tactagataa tattattttt aagtatgaaa gtcaagtata
     5881 tctagaaaac aatttatctt tttagaatat acaaccagta gccctctcaa atgcagaatc
     5941 attatgagaa tcactaggtt tttatagggt atttcatacc gttcctgact aaacactcgg
     6001 ataaagcttg ataaaatctg ccggattgac tagaaatttt ataccgaaca aattggcata
     6061 ttcatctcct aaaaattgtt aatatcccta gtatatatta ccatgcaatt ttgtaaattt
     6121 ttacagtaag ctactgggtc gactccatac agcccactgc gtaatctcta accaatccct
     6181 gttgattcaa gactagacca tgcagaactc cgccgtaaac agctcctccg tcaatcccca
     6241 ttttcccatc tgaactggtc cagatttggc taatgcggag cttggtctgg tagaggttat
     6301 aaacaggggt atgcccaaag acaatcattt tccctgtggt attttcggcc tcatggaaag
     6361 gggtacgtaa ccaaacctta tcatgattac tagtttttcg ccagtctggc aaagtcaagt
     6421 ccacaccagc atggacaaag atatatcctt ccgtttccag atgataggga caagatttga
     6481 caaaatcaat caacttctca tattgttcca tcactgcatt agcatccacc aaaccatcta
     6541 caggagcatc caagggacga cctaatagcg agttgatggt cgtatctcca ccattcctcc
     6601 ggtaatggtc atagcgttcc aagggatccc gcaaccaagc caaaaacatt cgttcatgat
     6661 tcccagtcag acagatagca tctttttctc ggactaattg ccagaccaac tccaaacaag
     6721 cttttgaatt ttctccacgg tcaattaaat ccccaagaaa aatcagctgt tgtcgttctt
     6781 cattccattt cttcaaaata tcgagtagca gttcaaactt tccatggaca tcgccgatta
     6841 caaaaaaatc ttttttcata gactctattc taccatattt aataagcaaa gaaaaactga
     6901 ccgtttccga tcagtttcat tctattacaa acgtgcgttc aattctgcac cgagttcttc
     6961 aaatcctggt tttccaagaa gagcgaacat gtttttcttg taggcttcta cacctggttg
     7021 gtcaaatggg ttgatcgcat tgaggtaacc agagatagca atcgccaact cgaagaagta
     7081 gaaggtgtaa ccaagtgtga actcatcttg ttgcggaagg gtcacaaaca tgtttggtac
     7141 gccaccatct gtgtgagcaa gaagcacgcc gtccgttgct tttttgttta caaagtcaac
     7201 atccttacct tgcaagtagc caagaccgtc aaggtcctct gccatgtcag gaatgaggat
     7261 attttttctt ggtttgtcaa cacgaaccac tgtctcaaag atattgcggt ttccttcttg
     7321 gatgaattgc ccaagagagt gcaagtctgt tgagaagtta gcagatgttg ggttgatacc
     7381 tttttggtcc ttaccttctg actcaccagc caattgtttc caccattcgc tgaagtattg
     7441 aagtgatggc tcgtagttag ccaagatttc tgttacatag ccttttctgt aaaggatgtt
     7501 acggacagct gcatattggt atgcttggtt ttcagcaatc ttatcagatg taaatgtcgt
     7561 gcgggctgcg tttgcacctt ccataagggc atcaatgtct gcaccagctg ccgcgattgg
     7621 caaaagacca actgcagtca agactgagaa acggccaccg acatcatctg gaacaacaaa
     7681 ggtttcccaa ccatttgcgt ccgcttcaac cttaacagca ccttttgcct tgtcagttgt
     7741 cgcatagata cgcttgttag cttcttcttg accgtatttc ttgacaagta attctttgaa
     7801 gacgcggaag gcaatagcag gttcagttgt tgtacctgat tttgaaatca cgttaactga
     7861 gaaatcctta tcagcaacat aatccaccaa gtcagcaaga tagcttgatg agatagagtt
     7921 tccagcgtaa aggatttgtg gagctttgcg ctcttcacgt gtttgcaagt ttacaaaggc
     7981 attgctcaag aaatcaatag ctgctttagc accaaggtaa gaaccaccga taccgataac
     8041 taccaaaact tcactttcat tttggatttt agctgcagct tccttgatac gagcaaactc
     8101 ttctttgtcg tagttttctg gcaaatccaa ccagccgata aagtcgctac caggacctgt
     8161 tccttgacgg agcatttggt ctgcaagggt aacttgtggt tgcatgtatt ctacttcttg
     8221 agctccaacg aattggccca agacttttga ataatcaaat gtaatatgtg tcatgttttt
     8281 cctccattta tgtaccataa tatgataacg ctttatcata tttttttcaa gaaatttatc
     8341 aattttcatt tattttcatg aaatatgttg tataaatctt aatttttgtg aaaatctaac
     8401 gaaattttcg cgtttgtaat aatcctccaa agtctctccc gactgggtta ctgtaatcca
     8461 tttcgggaga atcttagata gtaggtaaag cggaatgagg gcaggatacc aaatgaacat
     8521 gacttcaaag atgaaacggt cgttgttgcc tcttgaaatg taacgttggc ggtattcttc
     8581 tttgagagaa gggtggggaa tatagatatg aaatggcaca ccaccgcgta tagacatggc
     8641 cagcaacatt ctcatcagaa aattcagcgc tactaggact gtctttcctt gtctatgaag
     8701 agtgtaggcc ttattgacat agattgtttt atagccttta tccttcagtg tgcgtttggt
     8761 ggattttcgc tcctctttcg ttaaatgacg aacactgcta ttatcgtact taatgtcgga
     8821 catttctaag tccacaacat ctgtatattt cttagcaagt gtcgtttttc ccatacctgg
     8881 aaaggcaaat aaaaacatag gctttcctcc ttattcctca gtagaatagc agagcatcca
     8941 aaaagttttc ttaagttgcc cctattttgc ccctcatttc taaaaataaa ccaaagaaaa
     9001 accctctgaa atcctgattt caaagggttt ttagattata tgcaaaaaga gcacacattc
     9061 gacctcgctt agggctgctg gattcctccc ctgacccgct tcacgcacga atgttgctcc
     9121 gtttaatatt ataacacaat ttggccagag tgcaagtttg gaatattaac tagctatccg
     9181 aagttgcttc ctcttgcgtc ttcatgataa gtttagcagc cttctgtctt tctctgcgtt
     9241 gtctgaaaaa atcttgcatg atattggcac attccgcttc taaaatacct gtttctacct
     9301 tgacacgatg gttgagccgc tcatctgtca gaatgtcata gaggctcccc gcagctccaa
     9361 actttttgtt ggttgctcca tagatgacct gcggaatgcg tgctaggcca atagctccgc
     9421 tacacatcac acaaggttca atcgtcacaa aaagggtcga atcaagcaag cgccaattcc
     9481 cctcaacatt gttagcctct tggattgcca taacctcagc gtgcatgatt gcctgattga
     9541 gttcctcacg cgcattatgc cctctgccaa taatctggcc atccttgaca atcacacaac
     9601 caattggaat ttcatccttt tctagcgact ttctagcttc ctgcaaggct tgagtcataa
     9661 aatactcttt ttcttcatgt gtatagttca taaatctatt atagcacagc cctgataaca
     9721 gttcaaaatc acttctttat tctctgctat caaaatcaat ctaacactac ttcttcctta
     9781 tcacacattt ctttcaaaat tctgcccttc tattaactta aaaatataaa aatacctcct
     9841 cagtcgagaa ggtaggggga gcaatattga tatttacaga tattaatata tcatctattg
     9901 tcgatattgt caagaaaatt tttaaaaaaa ttcaaaaaca gcctcgaaag gctgtctctg
     9961 acattttcta ttacaattcg ccaactaatt tcacaacatt ttctactgtg aagccgtagt
    10021 tgtcaataac tgtttgggct ggagctgagg caccgaatgt gtcgatacca aggactttac
    10081 cgtcaagacc gacatacttg taccaacttt gagttgcacc catttcaatt gccaagcgac
    10141 gacggatagc atttggaagg atttcttcct tgtaagctgc gtcttgtgca tcgaagagtt
    10201 cagttgatgg cacagaaacc acacgaacct tagtacctgc tgcttctagt tctttggcag
    10261 ctttaacagc caagttcact tctgaaccag atgcaagaag gattgtatca aaccctgcta
    10321 cttcatagac aacataagcc ccttttgcaa ccttgtcaaa gtctgttcct tcttcaactg
    10381 tcaagttttg acgagtgaga acaagggctg atggtgtaga cttgctagtc aatgacaagt
    10441 accaagctgc ctgtgtttca cgcgcatctg ctgggcggaa gacattgagg tttggcatag
    10501 cacgaagtcc tgccaagtgc tcaatcggct cgtgagttgg accatcttca ccaactgcga
    10561 tagagtcatg agtgaagaca taagtcacag gaagtccttg aagagctgac aaacgaactg
    10621 ctgcttttac atagtctgag aagacaaaga aggtaccacc atagacacga agtccgccgt
    10681 gggctgccat accattcaag atagttccca tggcaaattc acgcacaccg aactgaatat
    10741 tgcggttgag tggatttact gaatcttgca aaccatcttc cttgatgtag gtcatgtttg
    10801 agtgagccaa gtcagctgaa ccacctaaga aagttggcaa tactttagcc gctgcgttga
    10861 gggcatcttg tgatgagtta cgagttgctt gtgagaagcc attttcgtaa accgggaagt
    10921 cttctggctt aatttcaact acgtcacgac cttccaagat agctgttact tcagctgcta
    10981 attctggatg tgctactttg tagtcttcaa ctaatttcac ccaagcatcg taggctgctg
    11041 caccgcgatc agctacatta gctttgaagt ccgcatagac ttcagctgga atttcaaatg
    11101 gtgcatagtt ccaatcaagc gccttacgag ttgcttctgt ttcttctgca ccaagtggag
    11161 caccgtgaac ggcatttgta ccttgtttgt ttggcgaacc atgaccgata acagtcttga
    11221 tttcgataag agatggctta cctgctgcct tagctttttc aatagcagca aagatggcat
    11281 ctacatctgt accgtctgtt acgaggtctg tatgccagcc ataggcattg taacgggcac
    11341 gtacatcttc tgtgaaggaa tcttttgttt cgccatccaa gttgatgtca tttgaatcgt
    11401 aaagaacgat gagtttttct aatttttgaa gacctgcgta agaagccgct tctgctgaaa
    11461 caccctccat caagtcgcca tcaccacaga ttacgtaagt atagtggtca aagattggga
    11521 aaccatcgcg gttgtactta gctgcaagga aacgctctgc ttgtgcaaaa cctgtcgcag
    11581 ttgagatacc ttgtccaaga ggacctgttg ttgcatctac acctgctgtg tgaccaaatt
    11641 ctgggtgacc tggcgttttt gatccccact gacggaagtt cttgatctca tccatactca
    11701 cttcttcaaa acctgaaagg tgaagaagtc cgtaaagcaa cattgaccca tgacctgctg
    11761 ataagataaa gcggtcacgg ttcacccagt ttggctgagc tgggttgata cgaagttctt
    11821 tagtaaaaag gctgtaggcc attggagccg cacccatgac gacacctggg tgacctgatt
    11881 ttgatttttc gatggcatca ataccaagga aacgaatcgc attgactgaa agatttgaca
    11941 tgtttttctc cttttttaaa gtcatgaatt tattatacca taaagcgttt tctatgtctg
    12001 tttgaaatga agcgagaaat aaattgtccg tagaaaagag gcaggacttt cgtcccgccc
    12061 ttggagtgaa cagtagtaat tcgcacattt catactttat cagagtttat agtgcctctc
    12121 ctcgtctcta tggggcaaga gagttctaaa tcttataaca aagccttaaa ttgaatattt
    12181 gagtcttcta agaagcaatc atcaaagcca cgtgggtggt gatattcgat acggtccttg
    12241 tccatcggat aagtatactt gccaccaact tcccagatga atggatggaa atcgtattgc
    12301 aagcgttcct tacgcatttt ccagagctgc aagatttcat ctgttgacgc catgaagtta
    12361 gaccagatat cgtagtgaac agggatgatt accttagcac gcaagttttc tgccatacga
    12421 agaaggtcga ttgatgtcat cttgtcctgg ataccgattg ggttgtcacc gtagttgttg
    12481 atagcaacgt cgatgttgaa gtcacgaccg tgttttgcaa agtagtttga gaagtgggag
    12541 tctgcaccgt ggtagatggt tccgccaggc gtttcaaaga catagttgac tgccttgcga
    12601 gccatgagtt catctgtcac aggaagtcct gctaatttac caccattttc gtcataacct
    12661 tcgattggta aggtcaccaa gcaagtacgg tcgaaggatt ctacagcgtg gaccttgatg
    12721 tctttgaact caaagctatc acctggtgcg atacggatga tacggtcagc tggaacaccc
    12781 catttttccc aaatgtcacc actttcaacc ggtccgacaa atttgacgtg gtccaacttt
    12841 ggattgttga tgatggcagc ggctgtgctg atgtccatgt ggtcactgtg gacgtgcgat
    12901 actagatagt agtccaattc attgatggca aatggatcga taaccattgg ctgcacacgc
    12961 aagtttggtt gcaatttgcg cacaccggcc atgttagcca tctggtgtcc ccaaaccata
    13021 tctttcactt ttttagtgga ttttccacgt gatgaccaga ggtccatgac cacgttagct
    13081 ccacctggtg ttttaatcca gacaccacag tttccaagcc accacatagc aaagttgcct
    13141 tctggcacta cttcttcttc aatttcttca ttgagccaag ttccccattc tgggaaggtt
    13201 gaaagaatcc aggattctct tgtaatatct tgaactttag ccattttcca ttcctcctat
    13261 aaggtacgtt tctatgcttc tagtatatgc tccaaaggca acaaaaaaaa gaccaaataa
    13321 aacacaggct tgtgttcaaa cttggacttt accctaatac agatctgtct caatatcttg
    13381 actggataaa ttggttaata attcattggt aatcagtttt tgtagccgtt gtttgagttc
    13441 tcgagcggtc cttccgtctg cgatatatcc cgacaaaagc ttgtctagtt ctactgcaaa
    13501 aacttgtttt tcatctgcca aactacgata ttttgcaaaa tgagtcatgt ttagcacatc
    13561 atcaaaatct aaaatggggt gaacctgcac caaagggaaa tccgtttcca acccatcgct
    13621 ggttgtaatc aagaaatcaa cctctagtaa gtcctcgaca ctcttgaatt gttcagtggt
    13681 aaagacggcg ccaatcttct tatctggcaa atgatgctgg cattgtttat aaagtaagcg
    13741 ttggactgac accccttcat cacagattaa atagacaatc tgtgtctgtg ccttgcgcgt
    13801 cccactgcgt cgaatagctc ctcctagatg aatcgtcaaa taggcaatat ctccatcgga
    13861 taactcaatc tgccactcct cctccaaaat ctttccagaa acccgtgtca tagcaaacag
    13921 ggtgctgtat ttatcttgga tttgttggac cattggattt ttagatagga tgccgtaggt
    13981 ttttctgaac aacagagcct tacaatgtgc caagagatgt ttggctaatt cgtcaggatt
    14041 ttccaattca aatggtgaat gtatctcaaa atgatgaata aatcgctcta ccactcgctt
    14101 caagtcaatg aaatcttggc tgaatacatg aacatcgctg tcctttcgat aggatagaag
    14161 taaaatggca atcagggaga tttctatttc atccaatttc aaatcaaagg tttgcaacaa
    14221 ggcatctttc aattcctgag caactcggta ctcgatacgc tctcgaactt gttcaaattc
    14281 tttgagaatg gctcgttctt ccaagtcatc cagctccata ttgcgatagc taaggagcaa
    14341 gaaaggcaat actttgagca taaactcgat ttcgtagcga ttgattttct tacccagttt
    14401 cttttctagc tgcgatactt gtccctgtaa aaattgtgcc atttcttctg agaagagcaa
    14461 ctgacacccc accaactcaa ataacttatc ttctagaacc tgcaaaaaac ctttattagc
    14521 atccaagaag attgtataga gaagtgagtg gacatattgg attttattta aagggtgaca
    14581 aacgagacta tagccatgac tcttagacac atagagggtc atcttgtatt gttcttgagc
    14641 caactgggtt cgaatttcat tcaaatcatt taagaccgta ttacgagaga cttctgtcaa
    14701 ctccattaga cgttcaatgg tcactctttc tggtgtgata cagatatata ccaacatcag
    14761 ctgaatgcgc tcaggcatgc tcatgacgta ggtgtacgaa tcaatggaat cgagaagatc
    14821 tcgacaggct agtttttgcg cttcggtaag tcgaataccg aggcgaggta agctttcaat
    14881 actctctaca gttgttggta gggcatcgtt tattttttct agatggtaat agatctttcg
    14941 acgtgattgt tgcaagccct tggaaatagc catgattgtc tcaggttcct gcagaccaat
    15001 caggtacctc agtagagcgc aactactctt atctaataac aagattctcc tcctctttcc
    15061 cccgtcccgt tactatctta acataattat ctgggatgtt ctaataatta ttaaaattca
    15121 tctgatcatt acttgcttta tgttgcataa atatttgtag ttagaattaa tagatgcttt
    15181 taataatttc tacccgggta atcagttctc cgtgcatgtt atctatccga agggcaacat
    15241 ttttcaaata tacacaggca ccaatagcaa tggttttctc ttcttcattg agttttcgtg
    15301 tcacaaaatc tctcaaagtc tcgctacctt cacttggaat ttttactcgt gcgatgatat
    15361 tagccacttt tactttctgg ctggcgcgca tgataatatt attggaatca tcaaactgag
    15421 tgaagaggta ttttctaact gcaaatagga tggcgaccga aataattcca atcaggtaat
    15481 cactactaga accatgctct acaatcagtt ggcgagcaat agcaaccagg agtacctcaa
    15541 tcacggtgct aggtgactgt ttgtaaagca ttttgataaa ttcgactccg actgccaagg
    15601 tcattgcacg actcagaaaa ttttgaataa acgtatccgc ttgaatatca ccagctaatg
    15661 agctgagtag gtctgcaaaa agaagcgttg acaaggctaa aagtgctaag ccaagtatgg
    15721 cagataaaat caattctaaa tagtaggctg tctctgtcag actatcctgt aaaaatttcc
    15781 tcatctttct cctcatcaaa agggaaaaag cagttctcct ttttggggag tctgctactt
//
LOCUS       DASGBY010000038        15529 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.038, whole genome shotgun sequence.
ACCESSION   DASGBY010000038 DASGBY010000000
VERSION     DASGBY010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15529
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.038"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..1266
                     /locus_tag="U1396_000916"
     CDS             <1..1266
                     /locus_tag="U1396_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5342116.1"
                     /translation="KKLIHNKLFLSSFVADLISNFGDTLYYLALMNHVLLLADTKFAL
                     AMITASETLPILAGLFIGIWADKTKNKLDTILATLVVRVGLYAFVGFLMGFAPALWVV
                     AVVCVINFLSDLAGQYENGLYMPVSLRVVAAEDRETAMAFKMTVKSLLQIAFQASGAI
                     LIGFMSYQNLAFFNAETFLVSLAIMATLRPALAKLLKENPIQEAEQTETEAGLIKGMR
                     NSLKESYQAVQNILVLKASIVTIASLNAIFTALSPLVILNMKEFSDFVIVNAGTTVAL
                     ISIFFSVGSILGSSIGMALFKNVSLINLLKFSTLMPVLIFSGFFLHNIYVVLTVIFVT
                     AMTLGVFNPKMNALVLNELPEDKLATVGGGIDAFCQIGMVAGQALVALMVTILSVTSI
                     SLIFLLLSVGLVSYTILVGCKPKNEVAQV"
     gene            1278..2318
                     /locus_tag="U1396_000917"
     CDS             1278..2318
                     /locus_tag="U1396_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HEM5342117.1"
                     /translation="MKLDYRDYRSEIVEKLFIPLIVKEREEPFEADLSQKEKDILKDA
                     LDIRNEVENKLADFRQEVNEVFVWGHIFTILHTLYFYLLDQGQDPKTVEEACQLILTL
                     SQEEVEDAMRTMLASENDGHREKDLSLMELLEKTDKKPAEKWYWSLALRNPLETVERS
                     VDLLNKLLPIYQPYFEGARAEREAFARDFDIEQLYRESKQLAMTSLDSLGVETAQFFV
                     LSPWNYWFAYYGNEQFDYMKVALLASCRIDQIMLSNDELDLDDLTTALKVISDSTRYQ
                     VLVELTKPHAKSKDIAERMAITGAAVSFHTQKLINGDLLLFNTKNSDVKYSVNRELLQ
                     EVIAKLTEDFDL"
     gene            complement(2455..3420)
                     /locus_tag="U1396_000918"
     CDS             complement(2455..3420)
                     /locus_tag="U1396_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342118.1"
                     /translation="MQNKTKQLNTSLLSLIQFIGAILVVALHCRRLFEADQLHFIQKS
                     IFSRMVVPYFMVTASFFLRRNYPSLSKQYLTWSILYLPFYLIYLTLQEIPFLYYPLAL
                     LVGLTYTGTSYQLWYMPAFFLGLILVHLSLEKWGWRITACLACLLYLLGSVETYSAYL
                     AESIFLTAFDNYKTFFFTSRNGLFYAPIFVLIGFYLANKLNHPIFQHRQKTKLLVCTA
                     LLAFEATVIYLNQGYDKNFLFSLIPFTAYLVAWTLTTDLFRKKKFQFLKEYASYYYFI
                     HVIPVEISFFFLETSSLTKIQQGWLVFLITIITCQLLSWLIINTQ"
     gene            3609..4295
                     /locus_tag="U1396_000919"
     CDS             3609..4295
                     /locus_tag="U1396_000919"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEM5342119.1"
                     /translation="MKDLHAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNE
                     RLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRL
                     GKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTD
                     YKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQA
                     AAKNAVEARG"
     gene            4298..7831
                     /gene="smc"
                     /locus_tag="U1396_000920"
     CDS             4298..7831
                     /gene="smc"
                     /locus_tag="U1396_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEM5342120.1"
                     /translation="MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESL
                     RWALGESSAKSLRGGKMPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVER
                     HIYRSGDSEYLIDGQKVRLRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAI
                     FEEAAGVLKYKTRKKETESKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLEL
                     DGQRKELYLDVLVAQLLLGKEKLSEKEAELESVKTELTSYYKQRSELEQENQNLKEKR
                     HRLSEQLEREQAVLLDLTKLISDLERKIEVHKLESSQNESSRQEAQARLENLLTRREQ
                     LAEQIEQKQETLAQLDSSLSSLKDDIAAVDKEISYFSEDPDQVLDHLREQYVALMQEE
                     AEASNSLTKIQQDIANQISLSESKSEDLARLQTEKQTAQEVLDKSRKSLEEADHVLRQ
                     LLESYQIKKSELDQTQTAYQAEQGRLFDLLDQLKGKQARQSSLEAILKNHSNFYAGVK
                     AVLQAAPSLGGIIGAVSEQLTFDTRYQTALEIALGGASQNVIVEDEATAKRAIAFLKE
                     KRQGRATFLPLTTIKPRQLSGQQVSLLESSEGFLGLASDLVTYQPNLDAIFQNLLGTI
                     AIFDSIDHANQAARATKFQVRMVTMDGAEIRPGGAFAGGSNRNNSTTFIKPELDALLG
                     EIAELSSQLQEQESLVAAKKTSLDQTREALETIKAEGEEARLNQQSARIHQEQAENRL
                     AQLSAQYDLQMSQVSPTILTELEEAAAKEEVNVQALNEKKLALDQQINQVRDNRDSIQ
                     ESLQKLQTQKGQLTLEQAELTSQLRFEQTDLRRLQEEKVVADKEISLLEDMIDQKLEA
                     LEDTSIEILEEQLQAASDKQNQTNQILIRLKFELEDIDGQFEDLEERLQQARTKNDDL
                     IRKQAKLEADCEQAGDKLRTLLGNLTEHFKLSFEAAQSQAKEVENLAVAEQSLKDLER
                     AIRALGPVNLDAIEQYDEVNNRLTFLNEQRTDILSARDLLLDTIHEMDDEVKERFKVT
                     FEAIRESFKQTFKQMFGGGSADLILTEGNLLTAGVEISVQPPGKKIQSLNLMSGGEKA
                     LSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKESQFIVVTHRKGT
                     MAAADAMYGVTMQESGVSKIVSVKLKDVEKL"
     gene            7828..8637
                     /locus_tag="U1396_000921"
     CDS             7828..8637
                     /locus_tag="U1396_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5342121.1"
                     /translation="MINKIYASDMDGTFLREDHSFDKERFRRILNQFKEKGYLFVATS
                     GRSMQSLKLVFEDFVDEIGFVAENGSIVEYQGQTIFMDDPISPEIYLPIIAGIDAGPF
                     GSSRSMVLSGLENFYLLKNAEPQFLEAMTNYYAHFRLVDTFEEVREEIIKINAKFSPE
                     EMDDARRWLNDTFEGVTAMTTGFDNIDIIPNGSNKSVGLSHLCAHFGITRQDVVAFGD
                     NQNDLDMFDFAGLALATENAREEVKAQADWMIGHCNDGAVLAYLEEEVNGN"
     gene            8627..9439
                     /locus_tag="U1396_000922"
     CDS             8627..9439
                     /locus_tag="U1396_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5342122.1"
                     /translation="MAIKLIALDLDGTLLTSDKRISEANKKALQAARERGVYVVLTTG
                     RPLQAIGTFLEELDLLGENQYSITFNGGLVQENTGRVLDKVGFTIEDVRTIRRVTNDL
                     DLPLDVLYGGDVYSLPSAHESLYLTCNPLLNKIVASDEEMPEDFVYNKAVSAVAADFL
                     DGQIPKIPAELHERFEIFKSRDILLEWSPKGVHKANGLAKLIGHLGIDQSEVMACGDE
                     GNDLSMIEWAGLGVAMANATDEIKSAANLVLPKNNDEDGIAWVIEHYVLNED"
     gene            9441..10715
                     /gene="ftsY"
                     /locus_tag="U1396_000923"
     CDS             9441..10715
                     /gene="ftsY"
                     /locus_tag="U1396_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEM5342123.1"
                     /translation="MGLFDRLFGQKKQEEQVALVEEVEREQSASSEDTVTTEVESATQ
                     EMEKFQSEVAETELTAEQEAQKQRTLDMMAQYYAAKEAAAARVKEAQEQGFDPAIQTK
                     VKEEPVEEVAPVGQESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEML
                     ILSDVGVQVASTLTEELRYEAKLQNAKKTDELRRVIIEKLVDIYEKDGQFSERINFQD
                     DLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDV
                     PVVTGPEKSDPASVVFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRT
                     LPDAPHETLLALDASTGQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELD
                     IPVKLIGFGEKIDDIGEFKSEEFMRGLLEGLV"
     gene            complement(10739..11296)
                     /locus_tag="U1396_000924"
     CDS             complement(10739..11296)
                     /locus_tag="U1396_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342124.1"
                     /translation="MQHKGTQILETERLILRPFQASDVESVFQNWTSDEKVTTYLTWP
                     THQTLQDSEDYVQFCLQSYSQEKTYRWVIELKENQQPIGDISVVSLDERVQAAELGWV
                     LGSKWWGQSYMAEALEAVNHYLLEEVGCLRITAVHDSENRPSGRVMEKVGMTYEGTLR
                     QAARNNRGIVDIAIYSLLHTDRKSR"
     gene            complement(11298..11972)
                     /locus_tag="U1396_000925"
     CDS             complement(11298..11972)
                     /locus_tag="U1396_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM5342125.1"
                     /translation="MTELNTILTQLQAASHAGTLKRYEKIGETKPYYGVPMGAISGIA
                     KAYKNRLDLFAPLWQTGVLEAQYLAIQIAKNKPDQLPQADLENCLNEQISVNVLDKLA
                     SIILSKRKDSRVWEEDLLAKDQAIFQRLGWFLRAKYFAGKTATNQEIEETLDHIRQHL
                     QTADPLIQWTMNQCLVEIAVAYPDYLEQGLVIGQELAVYSDMKVPKGCTSAYAPDWIE
                     ALLRRK"
     gene            complement(12114..13601)
                     /locus_tag="U1396_000926"
     CDS             complement(12114..13601)
                     /locus_tag="U1396_000926"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000096131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEM5342126.1"
                     /translation="MSSHVLFTIFGASGDLAKRKLYPSLFRLYKAGHIKENFAVIGTA
                     RRPWTKEFFEQTVIESLGDLPDTPRQAHEFASHFYYQSHDVNDTEHYVALRKLQDDLC
                     EKYNTQHNKVFFLSMAPEFFGTIAKHLKSEQIVDGQGFERLIIEKPFGTSLETASKLN
                     DELAAAFNEDQIYRIDHYLGKEMVQNIFAVRFANIIFEHIWNRDYIDNVQITFAEAIG
                     VEDRGGYYDHSGALKDMVQNHALQVLSLLAMDKPASFKEEDVRAEKIKVFQHLRQPSD
                     EDLKRNFIRGQYAAGSIDGKDYVSYLDEPNIAEGSQTETFAGGVFFVDTDRFRDVPFF
                     FRTGKRLTEKGTRVTITFKHAEDIFGQPSEANVLTIFIQPTEGFMLSINGKEVGSHFA
                     LTPAKLNFRHNATALGNSPEAYEKLFFDVLNGDSTNFSHWEEVKASWSLIDRIVDLWA
                     SNQVPLHTYPAGTMGPEATFDLLESYGCKWVWTPDVWYRERGLLK"
     gene            complement(13680..14495)
                     /locus_tag="U1396_000927"
     CDS             complement(13680..14495)
                     /locus_tag="U1396_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000617844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HEM5342127.1"
                     /translation="MIRFLILAGYFEMTMYLYISGKLDQYINLHYSYLAYLSMVLSFI
                     LAIVQLYVWVKEIRVHSHLKSKIAKLSSVGLLLIPLAIAWLFPTVSLDSTTVAAKGYH
                     FPLAAENDTNTQNQEGTTVQYLKPDTSIYFTKSAYQNQMREIADRYLAEETIIVTNEN
                     YMEVMEAIYDYPTEFSGKTIEMIGFVYNDPDNSQQFFLFRFGIIHCIADSGVYGLLST
                     GATTEFPNNTWVKARGTIKVSYHTSLKQNLPTLELQSMVQIEQPDSPYVYRVF"
     gene            complement(14492..15397)
                     /locus_tag="U1396_000928"
     CDS             complement(14492..15397)
                     /locus_tag="U1396_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM5342128.1"
                     /translation="MFGLDQLPTSVLQAGAIFLSIMIEALPFVLIGAIISGFIDVFIT
                     PDKVRKLLPKNKFLAILFGTFIGFIFPSCECGIVPIVNRLLEKKVPSYTAVPFLVTAP
                     VINPIVLFATFTAFGNSLLFAFYRALGAIIVSLVLGIILGFFVKGPILKGSKFDHHQH
                     GYSDKTSWQKVGFALIHAIDEFFDTGRYLVFGCLFASLVQVYIPTAVLTTIGHSPLTA
                     ILLMMLLAFLLSLCSEADAFIGASLLSSFGFAPVMAFLVIGPMVDVKNLLMMKHYFKG
                     KFIVGFIITITLVILGYSLILGGVV"
BASE COUNT         4516 a         2896 c         3765 g         4352 t
ORIGIN      
        1 aaaaagttga ttcacaataa attatttcta tctagctttg tagcagactt gatttctaac
       61 tttggagata ctctttacta tctggctttg atgaaccatg ttttactctt agcagatacc
      121 aagtttgccc tggctatgat taccgcatct gaaaccttgc cgattttggc tggtctcttt
      181 atcgggattt gggcagacaa gaccaaaaac aaattggata ccattcttgc aactctggtg
      241 gttcgtgtcg gtctctatgc ctttgttggc ttcttgatgg gatttgcacc agccctctgg
      301 gttgtggcgg tggtctgcgt catcaacttc ctgtctgacc ttgctggtca atacgaaaac
      361 ggtctctata tgccagtcag cttgcgggtt gtggctgctg aagaccgtga aacagctatg
      421 gcttttaaga tgacggtgaa aagtcttttg caaattgcct tccaagctag cggtgctatc
      481 ctcatcggat tcatgtctta ccagaatctc gccttcttca atgcagagac cttcttggtc
      541 agtcttgcca tcatggcaac cctccgtcca gctcttgcca agctactgaa ggaaaatcct
      601 atccaagaag ctgagcaaac agaaacagaa gcaggactta tcaagggtat gcgtaacagt
      661 ctcaaagaat cctaccaagc tgttcagaat attcttgttc tcaaagcgtc aattgtgacc
      721 attgccagcc tgaatgccat ttttacagca ctttcaccat tagttattct caatatgaag
      781 gagttctcag actttgtgat tgtcaatgca ggaacaaccg ttgctttgat ttccattttc
      841 ttctcagttg gtagtatctt ggggtcaagt atcggtatgg ctttgttcaa aaatgttagc
      901 ttgatcaatc tcctcaaatt ctctacattg atgccagtct tgattttctc gggtttcttt
      961 ctccacaata tttatgtggt attgacggtt atttttgtga cagctatgac tttgggtgtc
     1021 ttcaatccga aaatgaatgc cttggtctta aatgaactgc ctgaagataa attggcgaca
     1081 gtcggtggag ggattgatgc tttctgccag attggtatgg tagcaggtca agccttggta
     1141 gcccttatgg taacaatctt atctgtcaca agtatttccc tcatcttcct cttgctttct
     1201 gtgggactag taagctatac tattcttgtg ggttgtaaac ctaaaaatga agtagctcaa
     1261 gtttagaaag tatgcgtatg aaattagatt atcgagatta ccgcagtgaa attgtggaaa
     1321 aactgttcat tcccttgatt gtcaaggagc gtgaggagcc gtttgaagcg gatttgtcac
     1381 agaaggagaa agacattctc aaagatgcct tggacattcg caatgaagta gaaaacaagc
     1441 tggcggattt tcgtcaggaa gtcaatgagg tctttgtttg gggccatatc tttacaatcc
     1501 tgcacacctt gtatttctac ctcttggatc aaggacagga tccaaagaca gtcgaggagg
     1561 cttgtcagct gattttgacc ttatcgcaag aagaggtaga agatgctatg cggaccatgc
     1621 tagcgtctga aaatgacggt catcgtgaaa aggacctcag cctcatggaa ctcttggaaa
     1681 agacagataa aaagccagca gaaaagtggt attggtcact agcccttcgc aatcccttgg
     1741 aaactgttga gcggtctgtc gatctcctga acaagctact cccaatctat cagccgtatt
     1801 ttgaaggggc aagagcagag cgggaagcct ttgctagaga ctttgacatt gaacaactct
     1861 acagagaatc caagcagtta gccatgacca gcttggatag cttgggtgta gaaactgccc
     1921 aattcttcgt tctcagtcca tggaattatt ggtttgctta ttatggcaat gaacaatttg
     1981 actatatgaa agttgctctt ttagcttcct gccgaattga tcagattatg ctgtcaaatg
     2041 acgagttgga tctggatgat ttgacaacgg ctcttaaagt catcagcgat agtacgcgtt
     2101 atcaggtctt ggtggagctg accaagcctc atgccaagag caaggacatt gcagaacgca
     2161 tggctattac aggggcggcc gtatccttcc acacccaaaa gctaattaac ggtgacttac
     2221 ttctcttcaa tacaaaaaat agcgatgtca aatacagtgt caatcgtgaa cttctccaag
     2281 aggtcattgc caaattgaca gaggattttg atttgtaaaa aaagccttgt aagttagatc
     2341 ttacaaggtt cttttgtgct tatactcttc gaaaatcgaa atcagacgtt gttgacttga
     2401 tttgatgaac ttcagttcta tccgcatctg cgtcgcctag tctgtttttg attttcattg
     2461 agtattaatg attaaccagc tgagtagttg gcaagtgatg atggtgataa ggaagactaa
     2521 ccacccttgc tgtattttgg tcagggaact agtttctagg aagaaaaagc tgatttcgac
     2581 tgggataaca tggataaaat aataatagct ggcgtattct tttagaaatt ggaatttttt
     2641 cttgcggaag aggtctgtgg ttaaggtcca agcgactaga taggctgtga acggaatcag
     2701 gctaaataga aagttcttgt cgtagccctg attgagatag atgacagtgg cttcaaaagc
     2761 taaaagggct gtgcagacaa gtagtttggt tttttgtcgg tgttggaaaa tggggtgatt
     2821 gagtttgttg gctagataaa agcctatcag gacaaaaatc ggtgcgtaga agaggccgtt
     2881 gcgactggtg aaaaagaagg ttttgtagtt gtcaaatgcg gtcaggaaaa tcgattctgc
     2941 taggtaggcg gagtaggttt cgactgagcc tagaagatag agaaggcagg ctagacaagc
     3001 tgtgatgcgc cagccccatt tctccaagga aagatggacg aggataagac ctagaaagaa
     3061 agcgggcatg taccagagtt ggtagctggt gccggtatag gtcagtccga ctaggagtgc
     3121 gaggggatag tagaggaagg ggatttcttg gagtgttagg tagatgaggt agaagggcag
     3181 gtagaggatg gaccaggtca ggtattgttt ggagaggctg gggtagttgc gtcggaggaa
     3241 gaagctggcg gtgaccatga agtagggaac gaccatgcgg ctaaagattg atttttggat
     3301 gaagtggagc tggtctgctt caaatagtct tcgacagtga agggcaacga cgaggatggc
     3361 tccgatgaac tggatgaggg agagcagtga tgtattgagt tgttttgtct tattttgcat
     3421 gctaacgttc ttcttttttc ttctatttta tcgaaatctg atgaatatgt aaatgtttgc
     3481 aaaaagatgt ggagaggtgc tggctgaaac ttagttgaca agagaagtcc agtggaaaat
     3541 gtggtataat gttaggacgg agtaaatgta aaccatctat ttcgtttaag ttagaaagga
     3601 gcatatagat gaaagattta catgcaaaat tattggctga ttttgggatt gatttttcgg
     3661 atttgaattt attagaaacg gcttttaccc atacttctta tgccaatgag catcgccttc
     3721 taaaaatttc acataatgag cgcttggaat ttttaggaga cgctgttctc caattaatga
     3781 tttccaaata tctctatcaa aaatatcctg atagacccga aggtgagatg tccaagttgc
     3841 gttcgacctt tgtacgtgag gagtctttgg ctggtttttc acgtgcttgt ggttttgatc
     3901 ggtttcttcg tcttggtaag ggggaagaga agtctggagg gcgaaatcgc gatactattt
     3961 taggagatgc tttcgaggcg ttcttaggag ctctgctatt ggacaaaggg gaaaagaccg
     4021 tggaggaatt tatccataag gtcatgattc ctcgtttaga aaaagggaat tttgagcgcg
     4081 tgaccgacta taagactgct ttgcaggaaa ttttgcaggt caatggtgag attgctattt
     4141 cgtatcaagt aatagctgag tctggacctg cccatgataa gacctttgaa gtggaggtat
     4201 ctgctgatcg gcgtgtgatt ggtcgtggtc gtggtcgctc taagaaatta gctgaacaag
     4261 ccgccgccaa aaatgctgtg gaggctagag gataggtatg tatctaaaat caattgaaat
     4321 gcagggcttt aagtcctttg cggataagac taaggtagtc tttgatcgtg gagtgactgc
     4381 tgttgtaggg ccgaatggtt ctggcaagtc caatattaca gaaagtctac gttgggcctt
     4441 gggagagtcg tctgctaaaa gcctacgtgg aggcaagatg ccagacgtca tcttttcggg
     4501 aacagaaagc cgcaaggctc ttaactatgc ctcggttgtc gtgaccttgg ataatagcac
     4561 aggttttatc gccaataaac agaaagaaat caaggtagaa cgccacattt atcgatctgg
     4621 tgatagtgag tacttgattg atgggcaaaa ggttcgtcta cgggatattc atgatctttt
     4681 catggatacg ggcttgggac gtgattcttt ctctatcatt tcacaagggc gggttgaagc
     4741 aattttcaat tccaagcctg aggaacgccg tgctattttt gaagaggcgg caggggtctt
     4801 aaaatacaag acgcgtaaaa aagaaacaga aagtaagttg gcacaggccc agggcaactt
     4861 ggaccgcttg gatgatatta tctatgaatt ggataatcag gtcaaaccat tagagaaaca
     4921 ggcacaaact gctaagaaat ttctagaatt agatggtcaa cgtaaggaat tatacttaga
     4981 tgttttggtg gctcagttgt tgcttggtaa ggaaaagtta tcggaaaaag aagccgaact
     5041 agagtctgtc aaaactgaat tgactagcta ctacaaacag cgttctgagc tggagcaaga
     5101 aaatcagaac ttgaaagaga agcgccaccg cctttcagaa caattggagc gtgaacaggc
     5161 agttctgttg gatttgacca agttaatcag tgatttggag cgaaaaattg aggtccataa
     5221 actggaatct agtcaaaacg aatcaagtcg tcaagaagcg caggcgcgct tggaaaactt
     5281 gttgactaga cgagagcagt tggcagaaca gattgagcaa aagcaagaaa cgcttgcgca
     5341 attagatagt tccttgtcta gcttgaaaga cgatattgct gcggtagaca aagaaatttc
     5401 ctacttttca gaagatcctg atcaggtttt agatcatctg cgtgaacagt atgttgctct
     5461 gatgcaggaa gaggcagaag cttcaaacag tctgaccaag attcagcagg atattgccaa
     5521 tcaaatcagt ctttctgaga gtaaatctga agacttggca cgcttgcaga cggaaaaaca
     5581 aacagctcaa gaagtacttg ataagagtcg gaaaagttta gaagaagcag atcacgtttt
     5641 acgccagttg cttgagagct atcagattaa aaaatcggaa ttagatcaaa cccagactgc
     5701 ttatcaggct gagcaaggtc gcttgtttga tttgctggat cagttgaaag gcaagcaggc
     5761 tcgccagtct agtttagaag ctattttaaa aaatcactcc aatttctacg cgggggttaa
     5821 ggctgtctta caggcggcac caagcttagg aggaattatt ggagcagtca gtgaacaatt
     5881 gacctttgat actcgttacc aaacggcttt ggaaattgct cttggcggtg ctagtcaaaa
     5941 cgtcatcgtt gaagatgaag cgactgctaa acgagctatc gcatttttga aagaaaaacg
     6001 gcaaggacgg gcaaccttct tacctctaac aactatcaag ccacgtcagc tttctggaca
     6061 gcaagtctct ttactagaat cttcagaagg attcttgggg cttgcaagtg atttggtgac
     6121 ttatcagcca aatttagatg cgattttcca aaatttgcta ggcactattg cgatttttga
     6181 tagcattgac catgccaacc aggcggcgcg tgcgaccaag tttcaagtgc gtatggtgac
     6241 catggatgga gcggaaatcc gtcctggtgg agcctttgct ggtggtagca atcgaaataa
     6301 cagcacgacc tttatcaaac cagaactgga tgctctttta ggagaaatag cagagctgtc
     6361 tagccagttg caggagcaag aaagcttggt tgcagctaag aaaactagct tagaccaaac
     6421 cagagaagcc ttggaaacga ttaaggcgga gggggaagaa gctagattga accagcagag
     6481 cgcaaggatt catcaggaac aggcagaaaa tagactggct cagctatcag cccagtatga
     6541 cctgcaaatg agtcaggtta gtccgaccat tttgactgag ctagaagagg ctgctgctaa
     6601 ggaagaagta aatgtccaag ccttgaatga gaaaaaacta gccttggatc aacaaatcaa
     6661 tcaagtccgt gataatcgcg acagtattca agaaagcttg cagaaactac agactcagaa
     6721 gggtcaacta actttggaac aggctgaact gactagccaa cttcgttttg aacagacaga
     6781 tctgagacgt ttgcaagaag aaaaagtggt tgcagataag gaaatttctc ttttagagga
     6841 tatgattgac cagaagctag aagctcttga agatactagc attgagattc ttgaagaaca
     6901 attgcaggcc gcatctgata agcaaaacca gaccaatcag attctaattc gcttaaagtt
     6961 tgagttggaa gatattgatg ggcagtttga agacttggaa gaaagattgc aacaagctcg
     7021 gactaagaat gatgatttga tccgtaagca ggctaagtta gaggcggatt gtgagcaagc
     7081 gggcgataaa ttacggactt tacttggtaa tttgaccgag catttcaaat tgagttttga
     7141 agctgctcag tctcaggcca aggaagttga gaatcttgca gttgctgaac aaagcctcaa
     7201 agacctagaa agagctattc gtgctttggg tccagtcaat ttggatgcta ttgagcagta
     7261 tgacgaggtc aataaccgtc tgaccttcct caatgagcaa cggacagata ttttgtcggc
     7321 gcgtgattta ctactagata ctatccacga gatggatgat gaagtcaaag agcgcttcaa
     7381 ggttactttt gaagctattc gtgaaagctt taagcagaca ttcaaacaaa tgtttggcgg
     7441 tggttcagcg gatttgattt tgacagaagg taacctattg actgcgggtg tggagatttc
     7501 tgttcaacct ccgggtaaga aaattcaatc tctcaatctt atgtcaggtg gcgaaaaagc
     7561 cctttcggcc ctcgctctgc tattttccat tatccgtgtt aagaccattc cttttgtaat
     7621 tctcgatgag gtggaggcag ccttggatga ggcgaatgtc aaacgttttg gcgactacct
     7681 caaccgtttt gataaggaga gtcagtttat cgtcgtgacc caccgtaaag ggaccatggc
     7741 ggcagcggat gccatgtatg gggtgaccat gcaggaatct ggcgtgtcca agattgtttc
     7801 cgttaagctg aaagatgtgg agaaattatg attaacaaaa tttacgccag tgatatggat
     7861 ggtacctttt tacgagaaga ccatagtttt gataaggaac ggtttcgtcg tatactgaat
     7921 cagtttaaag aaaaaggtta tttatttgtg gcaacaagtg ggcgatctat gcaaagcctg
     7981 aaacttgttt ttgaagattt tgtagatgaa atcggttttg tggcagaaaa tggttcaatc
     8041 gttgaatatc aggggcagac tatctttatg gatgatccaa ttagtcctga aatttatctg
     8101 ccaattatcg cgggtattga tgcaggtccc tttggtagca gtcgttccat ggtgctgtct
     8161 ggacttgaaa acttttattt attaaaaaat gctgagcctc agtttttaga agcgatgacg
     8221 aattattacg cacattttcg attggtagac acatttgaag aagttcgaga agagattata
     8281 aaaatcaatg ccaaattttc tcctgaggaa atggacgatg ctagacgatg gttaaatgat
     8341 acatttgaag gtgtaacggc catgacaact ggttttgaca atattgatat aattccaaat
     8401 ggttcaaata aatcagttgg attgagtcat ctctgtgctc attttggaat tacccgtcag
     8461 gatgtagtgg catttggtga taatcaaaat gatttggata tgtttgactt tgcaggtctg
     8521 gctcttgcga cagaaaatgc aagagaggaa gtgaaggccc aggcagattg gatgattggt
     8581 cattgcaatg atggagcagt attagcctat ttagaggagg aagtaaatgg caattaagtt
     8641 gattgcattg gatttagatg gaacacttct gacatcggac aaacggattt cagaagctaa
     8701 taaaaaggcc ttgcaggcag cgcgtgagcg tggagtttat gtagttctga caacagggcg
     8761 tcctttacaa gctatcggta cttttctaga agaactagat ctgctagggg agaatcaata
     8821 ttcgattaca tttaacggtg gtctagtcca ggaaaataca ggtcgggttt tggataaggt
     8881 tggcttcacc attgaagatg tgcgcaccat ccgtcgtgtg acaaatgatt tggacctgcc
     8941 tttggatgtc ctgtatggtg gcgatgtcta ttctctacca tcagcccatg aatcacttta
     9001 tctaacttgt aatccattgc ttaataaaat tgtggcaagc gatgaggaaa tgccagaaga
     9061 ttttgtctac aataaggcag tttcagctgt ggcagcagac tttttggatg gacaaattcc
     9121 aaaaattcct gcggaacttc acgagcgttt cgagattttc aaatcgcgtg atattctgct
     9181 cgaatggagt ccaaaaggtg ttcataaagc aaatggtttg gctaagttga ttggacatct
     9241 ggggattgat cagtcagaag ttatggcctg tggcgatgaa ggaaatgatc tttcgatgat
     9301 tgaatgggct ggtctgggtg ttgccatggc taatgcgact gatgaaatca agtctgcggc
     9361 caaccttgtc ctgccaaaaa acaatgatga agatggcatt gcttgggtca tcgagcacta
     9421 tgtattgaat gaggactagt atgggattat ttgatcgatt atttggacaa aaaaaacaag
     9481 aggagcaagt cgctcttgtt gaagaagtgg aaagggagca gtcggcttct agcgaagata
     9541 cagtaactac tgaagttgag tcagctactc aagaaatgga aaagttccag tctgaagtag
     9601 cagagactga attgacagcc gaacaagaag ctcagaaaca acggacctta gacatgatgg
     9661 ctcaatatta tgcagccaaa gaagccgctg cggctcgagt gaaggaagcg caggaacaag
     9721 gctttgaccc tgctattcaa accaaggtca aggaagagcc tgttgaggaa gttgctccag
     9781 tagggcaaga aagtgaacag gacaagtacc agcgaacctt gaaaaaaact cgtacaggat
     9841 ttggggcaag gctcaatgaa ttctttgcca atttccgttc ggttgatgaa gaatttttcg
     9901 aagagttgga agaaatgctg attttatcag acgtaggtgt gcaagttgct tctacgctga
     9961 cagaggagct ccgctatgaa gccaagctac aaaatgccaa gaagacagat gaactccgtc
    10021 gggttatcat cgaaaaattg gtggatattt acgaaaaaga tggtcaattc agcgagcgaa
    10081 tcaatttcca agatgatttg acagtcatgc tctttgtcgg tgtcaacggt gttgggaaga
    10141 cgacgtctat cggtaagtta gcctacaagt acaagcaagc tggcaagaag gtcatgttgg
    10201 tcgcagcgga caccttccgt gcgggtgcgg tagcccagct ggtcgagtgg ggtcgccgtg
    10261 tcgatgtgcc agtagtcaca ggacctgaaa agtcagaccc agctagtgtg gtttttgatg
    10321 gggtaaaacg tgccgtggca gaaggcgtgg acattctcat gattgacaca gcaggtcgct
    10381 tgcaaaataa agaaaacctc atggcagagc tggaaaaaat cggtcgcatc atcaaacgaa
    10441 ccctacctga tgcaccgcat gaaaccctct tagcactaga tgcctccaca ggtcaaaacg
    10501 ccctcagtca agccaaggaa tttgcaaaaa ttactccatt gactgggcta gtcttgacta
    10561 agctagacgg tacagcaaaa ggtggtgttg tccttgccat ccgtcaggaa ctggatattc
    10621 cagtcaagct gattggtttc ggtgaaaaaa ttgatgacat aggtgaattc aaatccgaag
    10681 aattcatgcg tgggcttttg gaaggattgg tatagaaaaa agtcgttagt tcaatgaact
    10741 agcgactttt tctatctgta tgcaacagtg agtaaatggc aatatccaca ataccccgat
    10801 tatttcgagc ggcttggcgg agagttcctt cataggtcat accgactttt tccatgacac
    10861 gaccagaagg acgattttca ctatcgtgaa cagctgtaat ccgtaaacag cccacttcct
    10921 ccaataaata gtgattaaca gcttcaagag cttcggccat ataactttgc ccccaccatt
    10981 tactgcccaa cacccaacct aattcggcag cttgaactct ttcatcaagg ctgacaacgg
    11041 aaatatctcc aatgggttgc tgattttctt tgagctcaat tacccacctg tatgtttttt
    11101 cctgtgaata ggattgaaga cagaactgga catagtcttc actatcttgg agtgtctgat
    11161 gagttggcca ggtcagatag gtggtaacct tttcatctga agtccagttt tggaaaactg
    11221 attcaacatc gcttgcttga aaagggcgta aaattagacg ttctgtttct aaaatctgag
    11281 ttcctttatg ttgcatctta tttcctcctc aacaatgcct caatccagtc tggtgcatag
    11341 gcagaagtac agccttttgg caccttcata tcggaataga cagcgagttc ctgaccgatt
    11401 acaagtccct gttccaggta gtcgggatag gcaacggcaa tctccaccaa gcattggttc
    11461 atggtccatt ggataagcgg gtctgcggtt tgtaaatgct ggcgaatatg gtctagagtt
    11521 tcttcaattt cttggtttgt tgctgttttt ccagcaaagt atttggcacg aaggaaccaa
    11581 cctaggcgtt gaaaaatagc ttggtctttg gcaagcaaat cttcttccca aaccctgctg
    11641 tcttttcgtt tgctgagaat gatggaagcc agcttatcga gcacattgac cgaaatttgt
    11701 tcattgaggc aattctctag gtcagcttgg ggaagctggt caggcttatt ttttgcaatt
    11761 tgaatagcta aatattgtgc ttcaaggaca cctgtttgcc agagtggggc aaataagtcc
    11821 agtcgatttt tataggcctt ggcgatacca gaaatagctc ccattggaac gccgtagtag
    11881 ggcttagttt cgccaatttt ttcataacgc ttgagggtgc cagcatggct ggctgcttgg
    11941 agttgtgtga gaatggtgtt taattcagtc ataaatatct cccaaaaaaa ctggattgct
    12001 ccagttttta tatgtagtcg tttagtttgc ttttagtaca aggcaacgag ctgtaggctg
    12061 tactaaagta cggcaaagcg agttaacgaa gtaatcaaag ataaactaaa tgactatttc
    12121 aataagccac gttcacgata ccatacatct ggtgtccaaa cccacttgca accgtagctt
    12181 tctagcaaat caaaggttgc ctcaggtccc atagttccag ctggataggt gtggagtggg
    12241 acttggttgc ttgcccacaa atcaacaatg cggtcaatca agctccagct tgctttcact
    12301 tcttcccaat ggctaaagtt ggtagagtcg ccgttcaaga catcgaaaaa tagtttttcg
    12361 taggcttcgg gtgaatttcc aagagcagtt gcattgtggc ggaagttgag tttggcagga
    12421 gtaagagcaa agtgggaacc aacttccttg ccgttgatag agagcatgaa gccttctgtt
    12481 ggctggatga agatggtcaa tacattggcc tcagaaggct gaccaaaaat atcttccgca
    12541 tgcttgaagg tgatggtcac gcgcgtgccc ttttctgtca gacgtttacc tgtacggaag
    12601 aagaaaggta catcacggaa acggtcagta tcaacgaaga agacacctcc tgcaaaggtt
    12661 tctgtctgag aaccttcggc aatatttggt tcatccaagt agctaacgta gtcttttccg
    12721 tcgatggaac ctgctgcata ttgaccacgg atgaagttgc gtttgaggtc ctcatcagaa
    12781 ggctgacgaa ggtgttggaa gaccttaatc ttttcagcgc ggacatcttc ctctttgaag
    12841 ctggctggct tatccattgc tagaagggat aggacttgaa gggcatggtt ttgcaccatg
    12901 tcttttaagg cgccagaatg atcgtagtag cccccacgat cctcaacacc aatcgcttca
    12961 gcaaatgtaa tttggacgtt atcgatgtaa tcgcggttcc aaatatgctc aaaaataata
    13021 ttggcaaagc gaaccgcaaa gatattttgt accatttcct tgcctaggta atggtcgata
    13081 cggtagattt ggtcttcatt gaaggcagcg gctaattcat cattgagttt gcttgcagtt
    13141 tcaaggcttg ttccgaaagg tttttcgata atcaaacgct caaaaccttg tccatcaacg
    13201 atttgctcag atttgaggtg tttggcaatg gttccgaaaa attcaggcgc catagagagg
    13261 aagaagacct tgttgtgctg ggtattgtat ttttcacaca agtcgtcctg caatttacga
    13321 agagctacat aatgttccgt gtcattgaca tcgtggcttt ggtagtagaa atgacttgca
    13381 aattcatgag cttgacgtgg tgtgtcaggc agatcaccta gtgattcaat gacggtttgc
    13441 tcaaaaaatt ccttggtcca gggtctgcga gctgtaccaa ttactgcaaa gttttccttg
    13501 atgtgtccag ccttatagag gcgaaataaa gatgggtaaa gtttgcgttt ggcaaggtcg
    13561 ccactagcac caaaaattgt aaacaataca tgtgatgaca taatttcatt cctatctgtt
    13621 gaatatcatt aatagtatac cacaaattgt cagaaaattc actttttgag ttggaattat
    13681 tagaaaacac ggtagacata cggggaatct ggctgttcaa tctgaaccat cgattgtaat
    13741 tcaagtgttg ggagattttg tttcaacgat gtgtggtagg aaaccttgat tgttcctctg
    13801 gcttttaccc aagtattgtt aggaaattct gtggtagccc ccgtagagag taagccatat
    13861 accccagaat cagcaatgca gtgaataata ccaaagcgga aaaggaaaaa ttgctggcta
    13921 ttgtcagggt cattgtagac aaatccaatc atttcaatcg tttttcctga aaattccgta
    13981 ggatagtcgt agattgcttc catcacttcc atatagtttt cattagtaac gataatggtt
    14041 tcttcagcca agtatctatc agcaatttca cgcatctggt tttgataggc agattttgta
    14101 aaataaatag aagtatcagg cttgagatac tgaacagtcg tcccttcttg gttttgtgta
    14161 ttagtatcgt tttctgctgc tagtgggaaa tgatagccct tggcagcaac agttgttgaa
    14221 tccaggctta ccgtaggaaa gagccaggct atagcaagag gaatgagcag tagtccaacg
    14281 cttgatagtt tggcaatttt gctttttaaa tggctatgta ctcgaatttc ttttacccag
    14341 acatacaatt gtacgatggc aagtatgaaa gataaaacca tggatagata ggctagatag
    14401 ctatagtgca gattaatgta ttggtctaat tttccagaga tataaagata catggtcatt
    14461 tcaaagtaac ctgcaagaat taaaaaacga atcatactac acctccaagt atcagactat
    14521 atcccaaaat aacgagagtg atagtaatga taaaaccgac tataaatttc cctttgaaat
    14581 aatgtttcat catgagcaag tttttaacat ccaccatggg tccgataact aagaaagcca
    14641 ttactggggc gaatccgaag ctggatagta gtgatgcacc aataaaggca tcggcttcgg
    14701 aacataggga aagaagaaag gccagcaaca tcatcagtaa aatagctgtt aatggactgt
    14761 gaccgatggt agtcaggaca gcggttggaa tatagacttg tacgagactg gcaaatagac
    14821 aaccaaagac taggtaacgt cccgtatcaa aaaattcatc aatggcatga ataagtgcga
    14881 agccaacttt ttgccaactg gttttatctg aataaccatg ctggtgatgg tcaaacttgc
    14941 ttcctttaag aattggtcct tttacgaaaa aaccaagaat gattcccaat actagggata
    15001 caatgatggc tcctagggct ctatagaagg cgaaaagtag ggaatttcca aaagcggtaa
    15061 aggttgcaaa aaggacgata ggattaatca caggcgccgt tactaaaaag ggaacagcag
    15121 tataactcgg cacttttttc tctaatagcc gattgacaat agggacaata ccacattcgc
    15181 aagacggaaa aatgaagccg ataaaggttc caaatagaat ggcaagaaac ttgtttttag
    15241 gtaagagttt acgaacctta tctggtgtta taaacacatc gataaaacct gaaataatag
    15301 ctccaatcaa gacaaagggc aaggcttcaa tcatgataga caggaaaata gcccccgcct
    15361 gtaggacgga ggtaggtaat tgatcaagac caaacatatt attttttatc ctgattcaag
    15421 ttgtttttct cggaattttc ttttgatttt ggatctggat actcaatttc ttccaatttt
    15481 tcaaatgaag caaattcttc cagcatcttt tctaaatcat cttgtcgtt
//
LOCUS       DASGBY010000039        15358 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.039, whole genome shotgun sequence.
ACCESSION   DASGBY010000039 DASGBY010000000
VERSION     DASGBY010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15358
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.039"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            18..1259
                     /locus_tag="U1396_000929"
     CDS             18..1259
                     /locus_tag="U1396_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM5342129.1"
                     /translation="MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKIL
                     YEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNL
                     DARSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNV
                     SGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYT
                     YYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSP
                     ENRFVATNDLMNYVYSNFSLVTLVKKGEAFEDSKIKVFNGEKETSPVVAAADLTVVQR
                     KQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLKDQDLIGKGYISEQASVDMIIPSDM
                     KEASWPFSWWNQFVRYVNEKL"
     gene            complement(1533..2948)
                     /gene="sufB"
                     /locus_tag="U1396_000930"
     CDS             complement(1533..2948)
                     /gene="sufB"
                     /locus_tag="U1396_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEM5342130.1"
                     /translation="MSEERIEPTPIDLGEYKFGFHDENVELVASTGKGLNEEVIREMS
                     RIKGEPEWMLEFRLKSYETFKKMPMQTWGADLSELDFDDIVYYQKPSDKPARSWDDVP
                     DKIKETFERIGIPEAERAYLAGASAQYESEVVYHNMKEEYDKHGIIFTDTDTALKEHP
                     ELFKKYFGKLVPPSDNKLAALNSAVWSGGTFIYVPKGVKLDIPLQTYFRINNEGTGQF
                     ERTLIIVDEGASVHYVEGCTAPTYSTASLHAAIVEIIAHEGAYMRYTTIQNWSDNVYN
                     LVTKRARAEKNATVEWIDGNLGAKTTMKYPAVYLEGEGARGTMLSIAFANKGQVQDTG
                     AKMIHNAPRTSSSIVSKSIARGGGEVNYRGQVTFAKNSAKSISHIECDTIIMDDISKS
                     DTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSESEATEMIVMGFVEPFTKEL
                     PMEYAVELNRLIAYEMEGSVG"
     gene            complement(3298..3738)
                     /locus_tag="U1396_000931"
     CDS             complement(3298..3738)
                     /locus_tag="U1396_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEM5342131.1"
                     /translation="MALSRLDSLYMAVVSEHSKLPRHRGSLDGVEKLELHNPTCGDVI
                     ELSVKIEKDVITDIAFDGVGCTISTASASMMTEAVLGKEISQIQELAEIFSQMVQGQE
                     DPRQKGLGDASLLAGVAKFPQRIKCATLPWNALKKALERSDSAE"
     gene            complement(3725..4948)
                     /locus_tag="U1396_000932"
     CDS             complement(3725..4948)
                     /locus_tag="U1396_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5342132.1"
                     /translation="MDFESIRKDFSILDQVVNDEPLVYLDNAATTQKPQQVLDVLEDY
                     YQTDNANVHRGVHTLSERATARYEAARQKVADFIQAKSSKEILFTRGTTTSLNWVAQF
                     AKEILQPDQEVIISVQEHHSNIIPWQQACQQIGAKLRYVPLKDGELDVDSLKSILSEK
                     TKFVSLAHVSNVLGGVVPIGEIAELVHQVGAYLVVDGAQSVPHMAVNVQELDVDFFAF
                     SGHKMLGPTGIGVLYGKEELLNLMSPVEFGGEMIDFVYEQSATWKELPWKFEAGTPNI
                     AGAIGLGAAVDYLTEIGMDAIQAHEAELVDYVFPKLQAIPGLTIYGSQDLSKRTGVIA
                     FNLDDLHPHDVATALDYEGVAVRAGHHCAQPLLRYLQVPATVRASFYIYNTKADCDKL
                     VEAIIKTKEFFNGPI"
     gene            complement(4953..6215)
                     /gene="sufD"
                     /locus_tag="U1396_000933"
     CDS             complement(4953..6215)
                     /gene="sufD"
                     /locus_tag="U1396_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013989976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEM5342133.1"
                     /translation="MTKEKIQEFSALQAEPTWLTDLRLKAFDKIAELDLPVIERVKFH
                     RWNLGDGSLATNDEIGAVPDFTAIGDNPMLVQVGSQTILEQLPVDLVEKGVVFTDFAS
                     AMDLIPDVIEKYLGVAVAYDEHKLAAYNTAYFNATAVLYVPDNVEIDQPVEALFYQDS
                     TSPVAFNKRVLIIAGKNAKLNYLERFESLGDGAATTSANIVVEVIALAGSQIKFAAID
                     RLGKHLDTYLNRRGYLGNDATIDWAIGLLNEGNVVADLDSELKGNGSHANLKVVGLSS
                     GRQVQGVDTRVTNYGHNSVGHILQHGVILESGTLTFNGIGHIVRGAKGADAQQESRVL
                     MLSDKARSDANPILLIDENEVTAGHAASIGQVDPEDMYYLMSRGLDQATAERLVVRGF
                     LGAVITEIPVKEVRDQLIAVIEEKLTKR"
     gene            complement(6232..7005)
                     /gene="sufC"
                     /locus_tag="U1396_000934"
     CDS             complement(6232..7005)
                     /gene="sufC"
                     /locus_tag="U1396_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEM5342134.1"
                     /translation="MSVLEIKDLHVEIEGKEILKGVNLTLKTGEIAAIMGPNGTGKST
                     LSAAIMGNPSYEVTQGEILFDGVNILELEVDERARMGLFLAMQYPSEIPGITNAEFLR
                     AAMNAGKEDEDKISVRDFITKLDEKMELLNMKEEMAERYLNEGFSGGEKKRNEILQLL
                     MLEPTFALLDEIDSGLDIDALKVVSKGINAMRGEGFGAMIITHYQRLLNYITPDVVHV
                     MMEGRVVLSGGPELAQRLEKEGYVQVAAELGIDYKEDDI"
     gene            complement(7485..8657)
                     /locus_tag="U1396_000935"
     CDS             complement(7485..8657)
                     /locus_tag="U1396_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002306490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM5342135.1"
                     /translation="MIPFALKYIMVIITTMVISAIATPLVRFMSLRVGAVDNPNARRI
                     NKVPMPSAGGLAIFVAFTISVLWFLPGIVTRVNYHGTYLHYIWPLVLASSIIVLTGFI
                     DDVKELKPAPKMFGILAAATIIWIFTEFRFDSFKIPFGGPFLQFPVWLSFLLTVLWIV
                     SITNAVNLIDGLDGLVSGVSIISLTTMGIVSYFFLHDSNIFLTLTIFVLVAAIVGFLP
                     YNYNPAIIYLGDTGALFIGFMIGVLSLQGLKNSTAVAVVTPMIILGVPITDTVVAIIR
                     RKLSGQKIYEADKMHLHHRLLSLGLTHRGTVLVIYTISFLFSLTSLLLNVSSRIGGIL
                     LLVTMGLGIEILCELIGIFGINRTPLLNLLRFIGNSSYRQEKIAKYKKCCEEKKRK"
     gene            complement(8654..9376)
                     /gene="mecA"
                     /locus_tag="U1396_000936"
     CDS             complement(8654..9376)
                     /gene="mecA"
                     /locus_tag="U1396_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HEM5342136.1"
                     /translation="MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTV
                     LDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDLDQNLNFDEFTDLSELGDVASMT
                     PDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
                     FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPAL
                     QEHGTLMLPLVAIEELRKVPTV"
     gene            complement(9504..10340)
                     /locus_tag="U1396_000937"
     CDS             complement(9504..10340)
                     /locus_tag="U1396_000937"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEM5342137.1"
                     /translation="MLLELLKAIFLGIIEGVTEWLPVSSTGHLILVQEFVKLNQSKNF
                     LEMFNIVIQLGAILAVMTIYFKKLNPFQPGKTKRDIQLTWQLWAKVVIACIPSILIAV
                     PLDNWFEAHFNFMVPIAIALIVYGIAFIWIENRNSGVEPQVTDLAKMSYKTALLIGCF
                     QVLSIVPGTSRSGATILGAIILGTSRSVAADFTFFLGIPTMFGYSGLKAVKYFLDGNS
                     LNMEQVWILLVASMTAYLVSLVVIRFLTDFVKKHDFTVFGYYRIILGAILLVYAFITF
                     LF"
     gene            10467..12032
                     /locus_tag="U1396_000938"
     CDS             10467..12032
                     /locus_tag="U1396_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM5342138.1"
                     /translation="MKRKLSIFLLTLIAVFSVTTGVRADEYLRVGMEAAYAPFNWTQE
                     DDSNGAVPIEGTNQFANGYDVQVAKKIAASMDKELLVVKTKWEGLVPALTSGKIDMII
                     AGMSPTEERKKEIAFSDSYYTSIPTLVVRSDSQYANATSLADFAGAKITAQQGVYLYD
                     LIDQIEGANKQTAMGDFSQIRQALESGIIDAYVSERPEGRTAEAANKAFKMVELADSF
                     ETNAEDVTIAVGMRKDDERIAQVNKVLATISEEEQIALMDDMIENQPVEEASEGETPS
                     FFAQVWNIVVNNWQQLLRGTGMTLLISILGTIIGTAIGLLIGVFRTAPKAANKALAIG
                     QKVLGWIINIYIEIFRGTPMIVQSMVIYYGTAQAFGLNLDRTLAAIFIVSINTGAYMS
                     EIVRGGIFAVDKGQFEAATALGFTHNQTMRKIVLPQVIRNILPATGNEFVINIKDTSV
                     LNVISVVELYFSGNTVATQTYQYFQTFTVIAIIYFILTFTVTRILRAVEKHFDTDTYT
                     TGANQMQVEVPHD"
     gene            12025..12768
                     /locus_tag="U1396_000939"
     CDS             12025..12768
                     /locus_tag="U1396_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5342139.1"
                     /translation="MTKNVILEIKNLKKSYGQNQVLKDISISVEKGEVISIIGSSGSG
                     KSTFLRSINLLETPTEGQILYHGQDVLDKGYDLTTYREKLGMVFQSFNLFNNLNVLEN
                     AIVAQTTVLKRDRAEAEKIAKENLNKVGMTEQYWQAKPSQLSGGQKQRVAIARALSVD
                     PEVILFDEPTSALDPEMVGEVLKTMQDLAKSGLTMLIVTHEMEFARDVSDRVIFMDKG
                     VIAEEGNPQQIFENPQEERTREFLQRFLG"
     gene            complement(12892..13101)
                     /locus_tag="U1396_000940"
     CDS             complement(12892..13101)
                     /locus_tag="U1396_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342140.1"
                     /translation="MTSYEKVAAVVGWVREKKITGYRISKETNAREMSVIALAQGRAK
                     IDNISFATALGLIDFYDKNHKKFEN"
     gene            complement(13187..14089)
                     /locus_tag="U1396_000941"
     CDS             complement(13187..14089)
                     /locus_tag="U1396_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEM5342141.1"
                     /translation="MVLGPIVFIGSFLFFVLIALILIASGLYVVKQQTVAIIERFGKY
                     QKTSTSGINFKIPFGVDVIAARIQLRMLQSEIVVETKTQDNVFVTMNVATQYRVNENN
                     VTDAYYKLMHPEAQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQKQVAEEMSTYG
                     YVIVKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRL
                     HGVGIAQQRKAIVDGLADSIRELKESNVSLSEEQIMSILLTNQYLDTLNNFAQGGNQT
                     IFLPGNPEGVEDIRTQILSSLRAK"
     gene            complement(14099..15349)
                     /gene="ilvA"
                     /locus_tag="U1396_000942"
     CDS             complement(14099..15349)
                     /gene="ilvA"
                     /locus_tag="U1396_000942"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase IlvA"
                     /protein_id="HEM5342142.1"
                     /translation="MITAKNVEQAYSVLKRVVVRTPLDYSRYLSEKYGATIYLKRENE
                     QRVRSFKIRGAYYAISQLTDDEKSRGVVCASAGNHAQGVAYTCQEMQIPATIFMPITT
                     PQQKIGQVKFFGGDYVEIRLVGDTFDESAKAAQDYTQESGKTFIDPFDDENVQAGQGT
                     VAYEILEEAEEQTISFDQILVPIGGGGLVAGVSAYLKEHAPEIKIVGVEASGARSMKA
                     AFDKGRPVKLDQIDKFADGIAVQKVGKSTYEVARKYVDRLIGVDEGWISGTILDLYSK
                     LGIVAEPAGAATIAALEVVKDKIKGQTICCIISGGNNDINRMPEMEERALIYEGIKHY
                     FVVNFPQRPGALREFVNDILGPNDDITRFEYIKRANKGTGPVLIGIALGDKTDYTQFI
                     SRLEEFDPQYINLHENDSLYKMLV"
BASE COUNT         4405 a         3540 c         3072 g         4341 t
ORIGIN      
        1 cagccaaagg aatgatcatg cgtaaatttt tactaacact cactacagtt attgctcttt
       61 ttttcacttc cacacctatt ttggcagaag atttttctgt tgcagccaag catgctatcg
      121 cagtcgaagt aagtagcggc aaaatcttgt atgagcaaga tgccgaaacc aaagcaagca
      181 tcgcttctat cagtaagaca ttgagcattt acctggtcta cgaagcactg gcaaagggtg
      241 agatcacttt agatactatg gtagatattt ctgattatcc ctatagcctc acttctaata
      301 cagaattaag taatgtaaac ctggatgcac ggtcctattc agtaagagac ctattaaacg
      361 cttctttaat cacatcatcc aatagtgcta ttattgctct ggcagaaaaa atagccggta
      421 gcgaagctgc attcgtggat cgaatgaagg caaaagtcca agaatgggga attaccgata
      481 caaaaattgt caatgtatcc gggctagata ataccgactt gggtgaaaat atttatccag
      541 gttccagtcc tgaagatgta aatatgtttt cggccctaga tgttgctatc atcgcaagac
      601 gattaatact cgactatcct caggtactcg acattacctc gctaaacgcc tacgattttg
      661 gcggctacac ttactatagt accaaccaaa tgctgagcga cggcactcac gctcgtggag
      721 gggtggacgg cttaaaaaca gggacctcaa actcggctgg ttcaagtttt cttgcaacaa
      781 ctcaacaagc tggtatgcgc attatcacag tagtattgaa tgccaatgat gggctgacct
      841 ctccagaaaa tcgctttgtc gcgacaaatg atttgatgaa ctatgtttat tctaactttt
      901 cgcttgttac actagtaaaa aaaggtgaag cctttgaaga tagtaagata aaggttttca
      961 atggcgaaaa agaaacaagt cctgttgttg cagcagcaga tttaaccgtt gttcaacgaa
     1021 aacaaactga taatgtcccc accgcaactt ttacaacgga tataaaagaa attgatgctc
     1081 ccctcaaagc agggaccttg gtcagcaaac tacaactgaa agatcaagat ctcattggaa
     1141 aaggttatat ttccgagcaa gctagtgtcg atatgattat ccctagcgat atgaaagaag
     1201 catcctggcc attctcttgg tggaatcaat ttgtccgcta tgtcaatgaa aaattataaa
     1261 aaaatagtat gtcgaacgat tttcgacata ctattttttt atcgtagagt gacaaccgct
     1321 actccttatc tccagcctcg gatggtgaga gttcctgcag aactctttat tacatatcac
     1381 ttccttacag gaagcgatgt cagtagggta atctagtctc ccagactatg ttatttataa
     1441 agaagagcga ctgccgtcgc tcctcatctc ctacttcagt ggggagtttg acgggcttga
     1501 acagctttaa agctgttcaa gttcgcggca aactatccca ctgaaccctc catctcatag
     1561 gcaatcagtc tgttgagttc gactgcgtat tccattggga gttctttggt gaatggttcg
     1621 acaaagccca tgacaatcat ctccgtggct tcggattcgg ataggccacg gctcatgagg
     1681 tagtagagct gttcttctga gatttttgag actttggctt cgtgttcgag ggccacttgt
     1741 gagttgtgga tttcattaaa tggaatggtg tctgacttgg aaatatcatc cataataata
     1801 gtatcacact cgatgtggct aatcgacttg gctgagtttt tagcaaaggt cacttgacca
     1861 cggtagttga cttctccacc gccacgggca atggatttgg acacgataga agatgaggta
     1921 cgtggggcat tgtgaatcat cttagcaccg gtatcctgga cttgaccttt attggcaaag
     1981 gcaatggaca acatggttcc acgggctcct tcaccttcca agtaaaccgc agggtatttc
     2041 atggtcgtct tagcaccaag gtttccgtca atccactcaa ctgtggcatt tttctcggca
     2101 cgggcacgtt tggttaccaa gttatagacg ttgtcagacc agttttgaat ggtggtataa
     2161 cgcatatagg caccctcgtg ggcaatgatt tctacaatcg ctgcatggag acttgctgtt
     2221 gagtaggtcg gagctgtaca gccttctacg tagtgaacgc ttgctccttc atctacgatg
     2281 atgagggtgc gttcaaactg ccctgttcct tcattgttga tacggaagta ggtttgaagc
     2341 ggaatatcca gcttgacacc ttttggtacg tagataaagg tgccccctga ccaaaccgct
     2401 gagttgaggg cagccagttt gttatctgac ggcggaacga gttttccaaa gtattttttg
     2461 aaaagctctg ggtgttcttt aagagccgtg tcggtatccg taaagataat gccgtgcttg
     2521 tcgtactctt ctttcatatt gtggtagacc acttctgatt cgtactgggc agaagcaccc
     2581 gccaggtaag cacgctcagc ttctgggata ccgatgcgtt caaaggtttc cttgattttg
     2641 tctggtacat catcccagct gcgtgctggc ttatctgacg gtttttgata gtaaacaatg
     2701 tcatcaaaat ccagttcaga cagatcagca ccccaggtct gcatcggcat tttcttgaag
     2761 gtttcgtagg atttcaaacg gaattccaac atccattcag gctcgccttt gatacgggac
     2821 atttcacgaa tgacttcttc gttcaaaccc ttaccagttg aagccactag ttccacgttt
     2881 tcatcatgga aaccgaattt gtattcccca agatcaatcg gggttggttc aattctttct
     2941 tctgacataa tataagatac taagcccctt aagaaagcaa atgaaaaaca ggaaatcgac
     3001 ttcgtgcgca aacacacgcg gagatttatc ttttttcaaa agcttttagg gcgagttcaa
     3061 tttcatttcc aatcagaaac tgaacaatcc tttctgtatg attttcattt ttgtttattc
     3121 gatgatgctc agtaagcatc ttcacttcgt tcgattgctt tcttcaagac actaaacttg
     3181 gttggaacta aagttcctaa ccaagtaacg caaggttcta atcaaccttg ctaagtggct
     3241 tactaattgg ctgattttgg taatatcgac caaaatcgct catgtcgcag ttacccttca
     3301 ttcagcacta tcacttcgtt ccagtgcttt cttcagggca ttccacggta atgtggcaca
     3361 tttgatgcgt tgggggaatt tggcaacacc tgcgaggagg gaggcgtctc ccagtccctt
     3421 ctggcgtggg tcttcttgac cttggaccat ttgtgagaag atttctgcta gttcttgaat
     3481 ctgactgatt tctttgccaa gcactgcttc agtcatcata gaagctgatg cggttgaaat
     3541 ggtgcagcca acgccgtcaa aagcaatatc ggtaatcaca tctttttcaa tcttgactga
     3601 tagttcaatc acatcaccgc aggttggatt gtggagttct aacttttcca ctccgtccaa
     3661 acttccgcgg tgacgaggca acttggagtg ttcagacaca actgccatat aaagagagtc
     3721 taatctagat agggccattg aaaaactcct ttgtcttgat gattgcctcg accaacttat
     3781 cacagtcagc cttggtattg taaatgtaaa aacttgctcg tacagtagca ggcacctgca
     3841 aatatctgag aagcggttgg gcacaatggt ggcctgcccg cacagcaaca ccttcatagt
     3901 ccagagcagt tgccacatcg tgtggatgca agtcgtccaa gttaaaggca ataactcccg
     3961 tccgcttgga caggtcctga ctgccataaa tggtcaagcc tggaatagcc tgcaattttg
     4021 gaaagacata gtcaaccagt tctgcctcgt gggcctggat agcgtccata ccaatttcgg
     4081 tcaggtaatc aacggctgct cccagaccaa tcgcacctgc aatattgggc gttcctgcct
     4141 caaacttcca aggcaattcc ttccaagtag ctgactgctc atagacaaag tcaatcattt
     4201 caccgccgaa ttcaactggc gacatgagat tgagcaattc ttccttgccg tagagaacgc
     4261 cgattcctgt cggtcccaac attttatgac ctgaaaaggc aaagaaatcc acgtctaatt
     4321 cttgcacgtt gacagccatg tggggaactg actgggctcc gtccaccacc aagtaggcac
     4381 cgacttgatg caccagctct gctatttccc caataggaac cacgccacct aggacattgg
     4441 atacgtgggc cagggagacg aacttggtct tttcggagag tatggacttg aggctatcca
     4501 catccaactc gccgtctttt agtggaacat agcggagctt ggcacctatt tgctgacagg
     4561 cttgctgcca agggatgata ttggagtggt gctcttggac cgagattatc acttcctggt
     4621 ctggctggag aatttccttt gcaaactgag ctacccagtt gagactggtg gtcgttcctc
     4681 tggtaaagag aatttccttg ctagacttgg cctggataaa atcagccacc ttctgccgag
     4741 ccgcctcgta gcgagccgtt gcccgttctg acagagtatg aactccacgg tggacattgg
     4801 cattgtctgt ctggtagtaa tcttccagta catccagtac ctgttgcggt ttttgggtgg
     4861 tcgccgcatt gtccaaatag accagcggct catcgttaac aacttggtct aggattgaaa
     4921 aatccttgcg aatgctttca aaatcaatca tcttatctct ttgttagttt ttcttcaatc
     4981 acggcaatca attggtcacg aacttccttg acaggaattt cggtaatgac tgcgccaagg
     5041 aaaccgcgaa caaccaagcg ttcagcagtt gcttggtcca gaccacgact catgaggtag
     5101 tacatgtctt ctggatccac ctgaccgatt gaggctgcgt gtccagctgt gacctcattc
     5161 tcatcgataa ggagaattgg gttagcatct gagcgagcct tgtcagacag catgaggaca
     5221 cggctttcct gctgggcatc cgcaccttta gcaccacgga caatgtgtcc gatgccattg
     5281 aaggtcaagg ttccgctttc taagataacc ccatgttgca ggatgtgacc gaccgaatta
     5341 tgtccatagt tggtcacgcg cgtatccaca ccttggacct gacgacctga tgacagtccg
     5401 acaactttga ggttggcatg gctaccgttt ccttttaatt cactgtccaa atcggcaacc
     5461 acatttcctt cgttgagcag accaatcgcc cagtcaatcg ttgcatcgtt tccgagatag
     5521 ccgcgacggt tgaggtaggt atccaaatgc ttgccaagac ggtcaatagc cgcaaacttg
     5581 atttggctac cagcaagggc gattacttcc acgacaatat tggctgaagt cgttgctgcg
     5641 ccgtcgccca aactttcaaa gcgttctaga taattaagct tggcattttt tccagcgatg
     5701 atgaggacac gtttgttaaa ggcaactgga ctggtgctgt cttggtagaa aagggcctca
     5761 actggctggt cgatttcaac attatctggc acgtaaagga cagctgttgc gttaaaataa
     5821 gctgtgttat aggcggctaa tttgtgttca tcataagcta cagctactcc aagatatttc
     5881 tcgataacat ctggaataag atccatagct gaggcaaagt ccgtaaagac cacacctttt
     5941 tctacaaggt caaccggcaa ctgttctaga atcgtttggc tgccaacttg aaccaacata
     6001 ggattgtcac cgatagctgt aaaatctgga actgccccga tttcatcatt tgtagctagg
     6061 cttccgtcac ctagattcca acggtgaaac ttgacccgct cgataaccgg caagtccagc
     6121 tctgctattt tgtcaaaagc cttaagacgc aggtctgtca accaagttgg ttctgcctgc
     6181 aaggctgaaa attcttgaat cttttctttg gtcatagctt cctccaaaga cttaaatgtc
     6241 atcttctttg tagtcgatgc caagctctgc tgcgacttgg acataacctt ctttttccaa
     6301 gcgttgtgcc aattctggtc cgcctgaaag cacgacacgg ccttccatca tgacatggac
     6361 aacatcagga gtgatgtagt tgagcaagcg ttggtagtga gtaataatca tggcaccaaa
     6421 gccttcacca cgcatagcat tgatcccctt tgacacgact ttaagggcat caatatccaa
     6481 tcctgagtca atctcatcaa gaagggcaaa agtcggttcc aacatgagta attgcagaat
     6541 ctcattgcgt tttttctcac cacctgagaa accttcgttg aggtaacgct ctgccatttc
     6601 ctctttcatg ttaaggagct ccatcttttc atccaactta gtaatgaaat cacgaacaga
     6661 aatcttgtct tcgtcttcct taccagcgtt cattgcggca cgaagaaatt ccgcattagt
     6721 aatccctgga atttctgacg ggtattgcat agccaagaaa agacccatac gggcacgttc
     6781 atcgacttct aattctaaaa tattgacacc gtcaaacaga atctcacctt gggtaacttc
     6841 gtagcttgga ttgcccatga tggctgctga aagggtggat ttccctgttc cgttcggtcc
     6901 catgatggct gcaatttcac ctgttttaag ggtcaggttg acacctttta ggatttcctt
     6961 accttcgatt tcaacatgaa ggtctttgat ttctaatact gacatgctgt gctccttttc
     7021 atttttgtcc tcttcaaaaa ccacattaac tgaccaagct aactagatac accgataaga
     7081 ctcaaccttg gcagtgggga aagaactcga ccatccatag aagagttcgt tttcccaccc
     7141 ccgcacagtt gattaggtca gatttggagt gtaaaacacg aacaaatctg ccaatcaacc
     7201 actgcgctga gatgttgaca ctaacgttga gaagcggtac ggggcttgag cccagcctca
     7261 ctccactgga ctgttaaacc caatcaacca ctactgctct gagatgttga cgctaacttt
     7321 aagaagcggt gcggggcttg aacccagcct cttttcttgt taatgatgat tttcagagag
     7381 tgttaatcta taaaatagtc ttttctgaca attttaatta accatatcca ctatattata
     7441 tcaaaaaaag agcctgacgg ctcttatctt gtttagaaag attcttattt tctttttttc
     7501 tcttcacagc actttttata ctttgcgatt ttttcttgac ggtaactact attaccaata
     7561 aaccgaagaa gattgagcaa tggagttcga ttaataccaa agatgccaat caattcacag
     7621 agaatctcaa ttcccagtcc catggtcacc aataggagaa taccccctat tcgactcgaa
     7681 acattgagca aaagagaggt cagggagaat aagaaagaga tggtgtaaat caccaatact
     7741 gtgccacgat gagtaagtcc cagagagagc aagcgatgat gcagatgcat cttatctgct
     7801 tcatagattt tttgcccaga caattttcga cgaatgatgg ctactacagt atccgtaata
     7861 ggcactccaa gaataatcat tggagtaacc actgcaacag ctgtcgaatt tttcagtcct
     7921 tgaagggaca agactccaat cataaacccg atgaaaaggg ctcctgtatc gccaagataa
     7981 atgatagcgg gattatagtt ataaggtaaa aatccaacaa tcgctgcgac caaaacaaag
     8041 atggttaagg tcaaaaaaat attgctatca tgcaaaaaga aataagacac aattcccatc
     8101 gttgtcaggg aaataatcga tactcccgaa actagaccat ccagaccatc aatcaagttg
     8161 actgcattcg taatagaaac aatccaaagg accgttaata gaaaagagag ccagacagga
     8221 aattgaagga aaggtcctcc aaaaggaatc ttaaagctat caaaacgaaa ttccgtaaaa
     8281 atccaaatga tcgtcgctgc agctagaata ccaaacattt taggagcagg ctttagctcc
     8341 ttgacatcat caatgaatcc cgtaagaacg ataatgctgg atgctaggac caggggccag
     8401 atataatgca agtaagtgcc atggtaattg acacgggtaa caattcctgg taaaaaccat
     8461 aggacagaaa tggtaaatgc cacaaagata gccagacctc ccgctgaagg catgggcacc
     8521 ttatttattc gccgtgcatt gggattatcg actgctccaa ccctcaggga cataaaacga
     8581 accaaggggg ttgcaatagc tgatatgacc atagttgtaa taatgaccat tatgtatttt
     8641 agagcaaaag gaatcatact gtcggaacct tcctaagctc ctcgattgcc acaagcggaa
     8701 gcatcaaagt tccgtgttct tgtaaagcag gtctggtcaa cttagtatca ttggtaaatt
     8761 ccaacattct tgagagaatg tagcctggat actgcttgga acgattttct acattgataa
     8821 gaactgtcaa gtagtagtga ccatccattt tatataattc cgattcttct actggataat
     8881 caaccgtacc aacaaaagta aacagatcct ctatcgttgg aaattccaaa atatagtaaa
     8941 tatagcgctc ctgctcctct tcatctgctt cttcctcttg ctctacctct tccaaatgac
     9001 gaactgctgt tgcatccggt gcacttttct cacgaacggt ttgctccaaa ctcttgaaaa
     9061 actcatctgg agtcatactt gcgacatcac caagttccga caaatctgta aattcatcaa
     9121 aattcaagtt ctgatccaaa tcagatttgg taacaaagat gtccacccga tctggcttcg
     9181 gagtcacacg aaaactcaac ataccgcttt ctcggaaagt cattggtaaa tccaattcat
     9241 ccaaaacagt atagaagaac tcctctgtct tttcttgcgg aatgagaaag tccgaaagtt
     9301 ccattcctct ctcttccaaa tcatctaatt ttatagtgat tttcaaggtt gaatcactaa
     9361 tttgctttac tttcataact acctcattca ttgattcatc aatttcttaa aattgattga
     9421 tcattttcaa tactcataca tatcttccac cattatacta aaaccaagct cgaaagacaa
     9481 aagaaaagca ggtctccctg ctcttaaaat aaaaatgtaa taaaggcata aaccaataaa
     9541 atcgccccta aaatgatgcg gtagtaacca aaaaccgtga aatcatgttt tttaacaaag
     9601 tctgtcaaga aacgaataac aactaaggat actaagtaag ccgtcatact agcgactagc
     9661 aagatccata cctgctccat attcaggcta ttgccatcta agaaatattt aacagccttc
     9721 aagccactat aaccaaacat ggttggaatc ccaaggaaga aggtaaaatc tgccgccaca
     9781 gatcggctgg tccccaaaat aatcgctccc agaatggtcg cacctgagcg actagtcccc
     9841 ggaacgatgc ttaagacctg aaaacaccca atcaacaagg cagttttata agacattttc
     9901 gctaagtccg tcacctgtgg ctctacacca ctgttacggt tctcaatcca aataaaggca
     9961 ataccgtaga caatcaaagc aatcgcaatc ggtaccataa aattgaagtg cgcttcaaac
    10021 caattatcca acgggactgc aattaggatg gacggaatac aggcaatgac aaccttggcc
    10081 cataattgcc aagtcaattg aatatcacgc ttggtttttc caggctgaaa tggattcaat
    10141 tttttaaagt aaatagtcat aactgctaga attgctccta gctgaatgac aatattaaac
    10201 atttctagga agttcttgct ttggtttaat ttcacgaact cttgaaccaa aattaaatgc
    10261 cccgttgaag aaactggcaa ccattccgtc accccttcaa tgattcctaa aaatatagcc
    10321 ttcaacaatt ccaatagcat aaaaatctcc ttttcatcaa ttctctacat tatatcataa
    10381 aaaaactccc tattcatagt acaaggatat tgaaatttgt cagaattttt aataaaatgg
    10441 tgtaatagca ttttaaagga gacattatga aacgtaaact cagtatattt ctgctgaccc
    10501 taatcgctgt tttttctgta acaacagggg ttcgggcaga cgaatacctg cgggtcggta
    10561 tggaagctgc ctatgcacca tttaactgga cccaagaaga tgatagcaac ggtgccgttc
    10621 ctattgaggg aaccaatcaa tttgccaacg gatatgatgt tcaggttgca aaaaaaatcg
    10681 ctgcatccat ggacaaagaa ctcttggttg ttaaaaccaa gtgggaaggc ttagtccctg
    10741 ctcttacatc tggtaaaatc gatatgatta tcgccggtat gagcccgaca gaagagcgca
    10801 agaaagaaat cgccttctca gatagctact acacttcaat tcctaccctg gttgttcgtt
    10861 ctgatagtca gtacgcaaac gcaaccagct tggcagattt tgctggcgca aaaatcactg
    10921 cccagcaagg ggtttacctc tatgatttga ttgaccaaat tgaaggggct aacaaacaga
    10981 ctgccatggg agatttctca caaatccgtc aagctttaga atctggcatt atagacgcct
    11041 atgtttctga acgtccagaa ggtcgtacag cagaagctgc aaataaagct ttcaaaatgg
    11101 ttgaattggc agacagtttt gaaaccaatg ccgaagacgt gaccattgct gtcggtatgc
    11161 gcaaagatga cgagcgtatc gctcaggtca acaaagtctt agcaactatt tcagaagaag
    11221 agcaaatcgc acttatggat gatatgattg aaaaccagcc cgttgaagaa gccagcgagg
    11281 gcgaaacacc tagtttcttc gcccaagttt ggaatattgt tgttaacaac tggcaacaac
    11341 ttctgcgcgg aactgggatg acattactca tttccatcct cggtacaatt atcggtactg
    11401 ctatcggtct cctcatcggt gtcttccgta cagctccaaa agcagcaaac aaggcgcttg
    11461 ctattggtca aaaagtgctc ggttggatta tcaatatcta catcgaaatt ttccgtggta
    11521 cgccgatgat tgtacaatcc atggttattt actatggtac cgcccaagca ttcgggctca
    11581 atcttgaccg cacacttgcc gctatcttca ttgtatccat caacacaggt gcctacatga
    11641 gtgagattgt ccgcggtggt atctttgccg tcgataaagg ccaatttgaa gctgctactg
    11701 ctctcggatt tactcataat cagaccatgc gtaagattgt ccttccacag gttattcgta
    11761 acatcttacc agcgactggt aatgaatttg tcatcaatat caaagatact tctgtattga
    11821 acgttatctc agttgttgaa ctctatttct caggaaatac tgtcgcaacc caaacctatc
    11881 aatatttcca aacctttacg gttattgcta ttatctactt catcctaacc tttactgtga
    11941 cacgtatctt acgcgcagtt gaaaagcatt ttgatacaga tacatacaca acaggtgcaa
    12001 accaaatgca agtcgaggtg ccacatgact aaaaatgtaa ttcttgaaat caaaaatcta
    12061 aagaaatcat acggacaaaa tcaagtcctc aaagacatct ctattagcgt tgaaaagggc
    12121 gaggttatct caatcatcgg ttcatctggt tcgggaaaat caaccttcct ccgatctatc
    12181 aaccttttgg aaacaccaac agaaggacag attctatacc acggacaaga tgttttggat
    12241 aaaggatatg acttgacgac ttaccgtgaa aaactaggta tggtattcca atccttcaac
    12301 cttttcaaca atctaaatgt attggaaaat gccattgtag cacaaactac ggtactgaaa
    12361 cgagatcgag ctgaggcaga gaaaatcgcc aaggaaaacc tcaacaaggt tggcatgacc
    12421 gaacagtact ggcaagccaa accaagtcaa ctctctggtg gacagaaaca acgcgtggcc
    12481 attgcacgtg ccctatctgt tgacccagaa gttatcctct ttgatgagcc gacttctgct
    12541 ctcgatccag agatggtcgg ggaagttctc aaaaccatgc aagatttggc aaaatcagga
    12601 ttgacgatgc ttatcgtaac tcacgaaatg gaatttgccc gtgacgtatc tgaccgcgtt
    12661 atctttatgg ataagggtgt catcgccgaa gaaggcaacc ctcaacaaat ctttgaaaat
    12721 ccacaagaag aacgcacacg tgaattcctt cagcgttttc ttggttaaac tcaatctgtt
    12781 ccatagaaga ccattactta ccagtttcaa aactggtaag tttttttgac taaaaaagag
    12841 aggaatcgca aaattcctct ttttggacat ctctaaatga aaccatttag attagttttc
    12901 aaatttcttg tggtttttgt cgtaaaaatc aatcaaaccc aaggcagttg caaatgaaat
    12961 attgtcaatc ttagcgcgac cttgtgcaag agcgataact gacatttcac gagcatttgt
    13021 ttccttactg atacggtaac ctgtgatttt cttttcacga acccagccga caacagcggc
    13081 tactttttcg taactagtca ttagaaaccc ctttcttttt tattcgtgca atttagtata
    13141 atatgtttta acctattttg tcaagtaaaa tgttcgtttt ttaccatcat tttgccctaa
    13201 gagatgatag tatttgcgtc cttatgtctt cgaccccctc cggattcccc ggaaggaaga
    13261 tagtttgatt acctccttgt gcaaaattat tgagagtatc caagtattgg ttggtcagca
    13321 agatagacat aatctgctct tcagataggc taacatttga ttctttcagt tcacgaatcg
    13381 aatctgccag tccgtctaca atcgccttac gttgttgtgc aatacctaca ccatgcaagc
    13441 gatccttctc agcctctgct tctgctgctg tgacaatttt aatcttgtca gcttctgcca
    13501 attcttgggc cgcaacccgt ttccgctgag ctgcgttaat ttcattcata gattgcttaa
    13561 cctcggcgtc tggctctacc ttggtaatta aggttttgac aataacataa ccgtaggttg
    13621 acatctcttc tgctacttgt ttttgtacct caagtgcaat ctcatccttt ttctcgaaga
    13681 gctcatccag ggtcaattta ggcacagatg aacgcagagc atcttcaata taggacttaa
    13741 tctgtgcttc tgggtgcatg agcttgtaat aggcatccgt cacattattt tcatttactc
    13801 gatattgagt tgccacattc attgtgacaa aaacgttatc ctgcgtcttg gtttctacca
    13861 caatttcact ttgcaacatc cgcaattgaa tgcgagctgc aatgacatca actccaaatg
    13921 gtattttaaa gttaatacct gaagtagatg ttttttggta tttcccaaag cgctcaataa
    13981 tagcgaccgt ctgctgcttg acaacgtata gccctgaagc aatcaaaatc aaagcaatca
    14041 gtacaaagaa caagaaacta ccaataaaaa caattggacc aagcaccata atgacctcct
    14101 aaactagcat tttataaagc gaatcatttt catgaagatt gatgtactgg ggatcaaact
    14161 cttccaagcg agaaataaac tgcgtataat ctgttttatc tcctagggca ataccgatta
    14221 gaaccggccc tgttccctta ttggcacgtt tgatatattc aaaacgagta atatcatcat
    14281 ttggccctag aatatcattt acaaattcac gaagagcccc tggacgttgt ggaaaattaa
    14341 caacaaagta gtgtttaatt ccctcgtaga taagcgcacg ttcctccatt tccggcatcc
    14401 tgttgatgtc gttattacca ccagaaatga tacaacaaat ggtttgcccc ttgattttgt
    14461 ccttgactac ctcaagagct gcaatcgttg ctgctcctgc tggctcagca acaataccca
    14521 gcttagaata gaggtctaaa atagtcccgg aaatccatcc ttcatccaca ccaatcaggc
    14581 gatctacgta tttccgagcc acttcgtagg tcgacttacc gactttctgt accgcaatac
    14641 cgtcagcaaa tttatcaatt tggtctaatt taaccggacg acctttatca aaagccgctt
    14701 tcattgaccg tgccccactt gcttcaacac caacaatctt aatttcaggt gcatgttctt
    14761 tcagataggc cgaaacgcct gcaaccagac cacctcctcc tatgggaact aaaatttggt
    14821 caaaactaat ggtttgctct tccgcttctt ccaagatttc ataggctact gttccctgac
    14881 cagcctgcac attttcatca tcgaatgggt ctataaatgt tttcccactt tcctgagtat
    14941 aatcttgtgc tgccttggct gactcatcga aggtatcacc tacgagccga atctctacgt
    15001 agtctcctcc gaaaaattta acctgcccta ttttttgttg cggagttgta atgggcataa
    15061 aaatcgtagc aggaatttgc atttcctgac aggtgtaggc cacaccttga gcatggtttc
    15121 cggccgaagc acagaccact ccgcgtgact tctcatcatc tgtcaattgt gaaatagcat
    15181 aataggctcc tcgaatttta aaagagcgaa cacgctgttc attttctctt tttaaataaa
    15241 tagttgcacc atatttttcc gataagtatc gactataatc caagggggta cgtactacca
    15301 cgcgcttaag aacggagtat gcttgttcta cattttttgc tgtaatcata gttccatt
//
LOCUS       DASGBY010000040        15157 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.040, whole genome shotgun sequence.
ACCESSION   DASGBY010000040 DASGBY010000000
VERSION     DASGBY010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15157
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.040"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            124..573
                     /locus_tag="U1396_000943"
     CDS             124..573
                     /locus_tag="U1396_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5342143.1"
                     /translation="MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAE
                     RSEVETFVKDIEAELRISKSVASNLVKRMEKNDFIRVLPSQFDRRYKQLVLTEKGRSK
                     ICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV"
     gene            566..2272
                     /locus_tag="U1396_000944"
     CDS             566..2272
                     /locus_tag="U1396_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342144.1"
                     /translation="MFKEAILRYKWYALASVLLTSIVVATTLMQPSYLQDVLTAVLAN
                     DKEEIVRVGKFLLLIAGIGLLAGLTNTIMAAKISQGVSADIREKTFRKIQSFSYANVE
                     EFNAGNLVVRMTNDVNQIQNLVMMLFTILMRVPLLFVGAFIMAVRTLPELWWIIVLMV
                     IIIMGIMAVVMGLMGPRFGKFQSLMDRMNSIAKENLRGIRVVKSFVQEKNQYAKFKEV
                     SNELLDLNLFIGYGFSILQPLMMFISYMAIFVSLYLVSGMLDTNIEAVGGFTSFMSYL
                     MQIMFAIIMTSFMGMQASRAAISIKRLSEVLDTEPAMTFKDGAKEDLDGRIVFDNVSF
                     TYPHDTEPTLKNISFEIESGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTVSIGGRDL
                     KDISQETLRDTVSIVLQKAILFSGTIADNLRQGAPGADLERLERAAGIAQAKEFIDRL
                     DDTYESQVEERGNNFSGGQKQRMSIARGVISDPKVLVLDDSTSALDAKSEKLVQEALN
                     HDLKGTTTVIVAQKISSVVKADKILVLDEGRLIGQGTHAELVATNDVYREIYETQKGR
                     EE"
     gene            2273..4057
                     /locus_tag="U1396_000945"
     CDS             2273..4057
                     /locus_tag="U1396_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000859866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342145.1"
                     /translation="MKTLRFFWFYFKRYKLSFAVIFLAIVAATYLQVKTPVFLGNAIA
                     EMGKIGQAYFMANQAGQADFQPDMADFNGVMLNLFFAYAATVVASLIYTLLFTRIVAH
                     STNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
                     VGMVIMMFRQDTRLALVTIASTPVALIALVIIIRLSRKYTDKQQAAVSKLNAYMDEKI
                     SGQKAIIVQGVQEETIDGFLELNEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFA
                     GSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQVAASWAELQLAFTGAHRIQEMF
                     DEPEEVRPQNAPLFIELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGS
                     GKTTIMNLINRFYDVNGGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIR
                     FGDESISQEMVETAARATHIHDFIMSLPEGYETFVTDDENIFSTGQKQLISIARTLLT
                     DPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEIIVLKDGK
                     VIEQGNHSQLLKLNGFYAELYHNQFVFE"
     gene            4159..4602
                     /locus_tag="U1396_000946"
     CDS             4159..4602
                     /locus_tag="U1396_000946"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000701975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEM5342146.1"
                     /translation="MKIRGFELVSQFTDENLLPKRETAHAAGYDLKAAERISLEPGEI
                     KLVPTGVKAYMQANEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFAQM
                     RNITEETVVVEAGERMVQAVFAPFLLADGDQADGVRTGGFGSTGK"
     gene            4609..5142
                     /locus_tag="U1396_000947"
     CDS             4609..5142
                     /locus_tag="U1396_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5342147.1"
                     /translation="MQILFVRHSEPDYSMFDQHDNPRLYAGFGRDLAPLTEKGRTLAQ
                     EIASNPIFSQAQVVVASSVTRALETATYIAHAQQLPLLVEPFFHEWRPDMTGQNASQD
                     EAVLAHRLFLENSGAVPESSPVRYETAAEMRERFLQALEKYKAYDRIVIVCHGMLIRQ
                     FVPKETIAYCEILEYTL"
     gene            5149..6519
                     /gene="radA"
                     /locus_tag="U1396_000948"
     CDS             5149..6519
                     /gene="radA"
                     /locus_tag="U1396_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEM5342148.1"
                     /translation="MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEV
                     KNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFNRVLGGGVVPGSLVLIGGDPGIG
                     KSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
                     IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTK
                     EGTLAGPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVL
                     NPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRAS
                     LIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFI
                     GEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVL
                     QKVFNL"
     gene            6640..7134
                     /locus_tag="U1396_000949"
     CDS             6640..7134
                     /locus_tag="U1396_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEM5342149.1"
                     /translation="MSYFQNFMKANKAYVDLHGDYHLPLRPKTKVAIVTCMDSRLHVA
                     QALGLALGDAHILRNAGGRVTEDMIRSLVISQQQLGTREIVVLHHTDCGAQTFTNEEF
                     AVQLKRDLGVDVAGQDFLPFTDIEESVREDIALLKQSPLIPDDVEISGAVYDVDTGRM
                     TEVI"
     gene            7342..8100
                     /locus_tag="U1396_000950"
     CDS             7342..8100
                     /locus_tag="U1396_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HEM5342150.1"
                     /translation="MSDNRMKYTIDSNMQFPLVEIALEAGESAYIQQGSMVYHTPSVT
                     LNTKLNARGGSGFGKLMGAIGRSMVSGESMFITQAISNSDDGKIALAPSTPGQVIALE
                     LGAEQYRLNDGAFLALDGSAQYKMERQSVGKAFFGGQGGLFVMTTEGRGTLLANAFGS
                     IKKLTLDGGSITIDNAHVVAWSRDLDYNIHMENGFLQSIGTGEGIVNTFTGYGEIYVQ
                     SLNIETFAQVIGNHIVGAGGDGGGGSTSLLDAIF"
     gene            8278..8724
                     /locus_tag="U1396_000951"
     CDS             8278..8724
                     /locus_tag="U1396_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HEM5342151.1"
                     /translation="MKVRIEFDDSLDHVEVVIRTSQLGPEIEQIQQALQQVSRPSLVF
                     YKGSSEYFLSLGDILFFETDGTKIFAHTGDDAYEVKMKLYELGEHLPIYFCRVSKSTI
                     ANARAVYSLDKSFSGTSRISFYQTHKEVHVSRHYYHLLKEKLREVR"
     gene            8729..9388
                     /locus_tag="U1396_000952"
     CDS             8729..9388
                     /locus_tag="U1396_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342152.1"
                     /translation="MKRLLIGAAVIGLAVLVLLRDSLGLHLAMPFWTTVWFVLTFVTG
                     FHRLVKLDWLASIFCFGLAFIAANSVYEWVEFGTWNMFLSLVLLCLGLKLIFKPRKRR
                     LAHGVVTGVIGDKGRDTAFGSSTRYIHEENFIHDSVDVAFGSSTVYFDQAVILGNKAD
                     FHIDAAFSNITLYLPADWQAVVELDSAMSTTNNYASEPKEKVLLVTGDMAFSTLNIYS
                     M"
     gene            9480..10760
                     /locus_tag="U1396_000953"
     CDS             9480..10760
                     /locus_tag="U1396_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5342153.1"
                     /translation="MKKILKNATYLWVLTADMLSNFGDVVYYLALMNYVLLVPNSRLA
                     LAIVTFSEIFPSFMGLFTGYLADKTVNKISTIKLTLLFRVLLYLILGFCMGFEPALWI
                     VVVAATFNVFADFAGFYENGLYTPLGLRVAPKEEREQYSAFRQTVTSLLNIAFQALSA
                     LLVGLLSYQNLAFLNAGTFLAALLIMQLLTPVFRKLLTEQPLKIAEQSSQTEQKTKRP
                     GILASFKQAIVELRKIPEFRLVLITTPLINACGAILYPILVLLISEDPGLVFLNVETT
                     LALTILIFFIGHILGSTLVFTLFKNTSMVTLEVAATFSLLGVFVGMLLHQLPIIFFFL
                     TTMGISSGASGPKFNAKFVNSMPEEQLATIGGAVSTYFMLGQAFTRLLVSGLVLILTV
                     NQISGLFLAATGLLVLYILYWLARNQKTPQNQSV"
     gene            10832..12286
                     /locus_tag="U1396_000954"
     CDS             10832..12286
                     /locus_tag="U1396_000954"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEM5342154.1"
                     /translation="MTKPIRVRYAPSPTGLLHIGNARTALFNYLFARHHGGTFLIRIE
                     DTDRKRHVEDGERSQLENLRWLGIDWDESPETHEQYRQSERLDIYQKYVDQLLAEGKA
                     YKSYVTEEELAAERERQEAAGETPRYINEYLGMSEDEKAAYIAEREAAGIVPTVRLAV
                     NETGIYKWNDMVKGEIEFEGGNIGGDWVIQKRDGYPTYNFAVVVDDYLMKISHVIRGD
                     DHIANTPKQLMVYEALGWEAPEFGHMTLIINSETGKKLSKRDTNTLQFIEDYRRKGYM
                     PEAVFNFIGLLGWNPGGEEEIFSREQFIQLFDENRLSKSPAAFDQKKMDWMSNEYIKN
                     ADLETIFNLAKPFLEEAGRLTDKAEKLVELYKPQLSSADEIVGLTDLFFSDFPELTAE
                     EKEVMAGETVPTVLNALKEKLEAMTDEDFQPDNIFPQIKAVQKETGIKGKNLFMPIRI
                     AVSGEMHGPELPNTIYLLGREKSIQHIDNMLKSL"
     gene            complement(12341..12841)
                     /locus_tag="U1396_000955"
     CDS             complement(12341..12841)
                     /locus_tag="U1396_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5342155.1"
                     /translation="MEIWNTYTADGHLTDHTLTRGESIPDGLYHLVVECIIRHHDGST
                     LFMKRDSTKPSYPDYYEATAGGSALFGEIAEQAILREVREETGIELTADQLRHHTHFV
                     AHDDQCIFHCYWAETDWDKSTIQLQSNETSNYIWVPQENLKNFLETELVIPRQKDYVE
                     RLFLKS"
     gene            12962..13837
                     /locus_tag="U1396_000956"
     CDS             12962..13837
                     /locus_tag="U1396_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5342156.1"
                     /translation="MQTIIPHLWYDTEAKEAVAFYVELFGGKIDWTYTITDTPSGDSD
                     LIQFQLGDMTLAAISAGPYFKLNESMSLMVNVASKDEVTRLYQVLSEGGRVLMPLGEY
                     PFSPYYVWLEDRFGLSWQLSYAPDLDKPYQFDICLLFSQEQVGLAQPMLDYYKDKLHQ
                     ARLGRLSYYGEGEAAVAAAKLNYAELFIGDQKIIAMDHGYGGVASFNEAFSFMVYVDS
                     QEEAESWYEKVSAVPEAEICGWAKDQFGISWQIVPRILMEAYDTANPEKVKAVNAAVM
                     TMKRLDIAAIQALLN"
     gene            13943..14461
                     /locus_tag="U1396_000957"
     CDS             13943..14461
                     /locus_tag="U1396_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor NadR"
                     /protein_id="HEM5342157.1"
                     /translation="MKATERRKKILSLLRESPYPLAANYLAKEFGVSRQVIVGDVALL
                     RAEGEAVLATPRGYLLQSSLPSTEGAYIRKIACQHGPEEVEKELTILLEGGAQILDVE
                     IEHPIYGLLSGKLNIASLEDRDHFLDALGQYQGVLLSNLTEGVHTHTVSFPSVQAYNE
                     LSAALKHAGILL"
     gene            14541..15089
                     /locus_tag="U1396_000958"
     CDS             14541..15089
                     /locus_tag="U1396_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342158.1"
                     /translation="MSQLTLSSKNSVKQLSISAILTAFAILIPLMMPIKIIIGPASYT
                     LASHIPLFIAMFISPATAIFVALGSSLGFFLAGFPIVIVFRALTHLFFLTLGAVLVKR
                     FPTLMDSKRFLLLGIGLNLLHGLGEYIVVMVLTSGQQTSATYWITMLGLVGVGSAIHG
                     LLDFSLAYYFWKILKERKIYQP"
BASE COUNT         3913 a         3191 c         3728 g         4325 t
ORIGIN      
        1 agtaagtaat ggtgctgaaa taacaaaata ttttcagaaa agagcaaacg gaataattga
       61 caatagttcc taagagaact ataatagttc tcatggtaat tattttcgta gaaaggagct
      121 attatgggac atactattgc agattttcgg aatctattaa atcagattga acaaatcagt
      181 gaaaccattg caaaggaata tgatgtggag cacctagctg gaccacaggg atgggctctg
      241 cgtttcatag cagaacggtc tgaagttgaa acctttgtca aagacattga agcggagttg
      301 aggatttcca aatccgttgc cagcaatcta gttaagcgaa tggagaaaaa tgactttatt
      361 cgggttttac cttctcagtt tgacagacgc tataagcagt tggtcttgac agagaaaggt
      421 cggagcaaga tttgtcacct aaaatccttc catgaggaga tgcaccattc tctctttcga
      481 ggtattcaaa aggaagaatt tgatttgatc agacaggtag ccgatcaatt aaaagataat
      541 attcaacact ataaggagaa gaatcatgtt taaagaagcc attttacgtt acaaatggta
      601 tgccttggca tcggtcttgt tgacgtctat tgtcgtagca acgaccttga tgcaacctag
      661 ttatttacag gatgtattga ctgctgtctt ggccaatgat aaggaagaaa ttgttcgtgt
      721 cggtaagttc ctcttgctga ttgcgggaat cggtctcttg gctggtctga ccaatacaat
      781 catggcagct aagatttctc agggagtgtc tgcggatatt cgtgagaaga cctttcggaa
      841 aattcagagc ttttcttatg ccaatgtaga ggaatttaac gcagggaatt tggtggttcg
      901 tatgaccaac gacgtcaacc aaattcagaa ccttgtcatg atgctcttta cgatcttgat
      961 gcgggtacct ctgctctttg ttggtgcctt tatcatggcg gtgcgcactt tgccagaact
     1021 ttggtggatt atcgtgctca tggtcatcat catcatggga atcatggcag tcgtgatggg
     1081 cttgatggga ccgcgctttg gtaaattcca gtccctgatg gacaggatga acagcattgc
     1141 aaaggaaaac ctccgtggga ttcgtgtggt taagtccttt gtacaggaga agaatcaata
     1201 cgctaaattt aaagaagtat ccaatgagct tttggatctt aacctcttta ttggttatgg
     1261 tttttctatc ttgcaacctt tgatgatgtt tatctcctac atggcgattt ttgtgtcgct
     1321 ttatctcgtt tcagggatgt tagacactaa tatcgaagca gttgggggct ttacttcctt
     1381 tatgagttac ctcatgcaaa tcatgtttgc cattatcatg actagcttta tggggatgca
     1441 ggcttcacgt gctgctattt ccattaaacg tttgagtgag gttttagata cagagccagc
     1501 gatgaccttt aaagatggtg caaaagagga cttggatggt cggattgtct ttgacaatgt
     1561 tagcttcacc tatccgcatg ataccgagcc gaccttgaaa aatatctcct ttgagattga
     1621 gtctggtcag atggtcggtg tggtcggtgc aacgggtgcg ggtaaatcaa cactagctca
     1681 gctcattccg cgtttgtttg atccacagga agggactgtg tcaattggcg gtcgtgattt
     1741 gaaagacatc agtcaggaaa ccttgagaga tacagtgtct atcgttttgc aaaaagctat
     1801 tctcttctca gggaccattg cagacaacct gcgtcaaggt gcacctggtg cagatttgga
     1861 acgtttggag cgggccgcag gtattgccca agccaaagaa tttatcgacc gcttggatga
     1921 tacctatgag agccaagtag aagaacgtgg aaataacttc tcaggtggtc agaaacagcg
     1981 gatgtccatt gcgcgtgggg tgattagtga tcctaaagtc ttggtgctag atgattcgac
     2041 atcagccttg gatgccaagt ctgagaagct ggtccaagag gccctcaacc atgacttgaa
     2101 ggggacaacg acggtcatcg ttgctcagaa gatttcttct gttgtcaaag ctgataagat
     2161 tttggttctt gacgaaggcc gtctgatcgg tcaaggtacc cacgcggagt tggtagcgac
     2221 gaacgatgtt taccgtgaaa tctacgaaac acagaaaggg agggaggaat agatgaagac
     2281 attacgtttt ttctggtttt attttaaacg ctataaactg tcctttgctg tgatttttct
     2341 agctattgtg gcagcgacct acttgcaggt caagacacct gttttccttg gaaatgccat
     2401 tgcggagatg gggaaaattg ggcaggctta ctttatggcc aatcaagctg gtcaggctga
     2461 ctttcagcca gatatggctg attttaacgg ggttatgctc aatcttttct ttgcctatgc
     2521 ggcgacggtt gtggcttcct tgatttacac cctcctcttc acgcgtatcg tggctcattc
     2581 gaccaaccgt atgcgtaagg gcttgtttgg caagctggaa cgcttgacag ttgccttctt
     2641 tgatagccac aaggacgggg atattctttc tcgctttacc agtgatttgg acaatatcca
     2701 aaacgctttt aaccagtcct tgacccaagt ggtgaccaac atcgctcttt atgttggtat
     2761 ggtcatcatg atgttccgtc aggatactcg cttggccttg gtgaccattg cttctacgcc
     2821 agttgctttg attgccctag tgattatcat tcgcctgtca cggaaatata ctgataagca
     2881 acaggctgcg gtatctaagc ttaatgcata catggatgag aagatttccg gacaaaaagc
     2941 gattattgta caaggtgtgc aggaagagac aattgatggt ttcttggaac tcaatgaaga
     3001 agttcgtcgt acgaccttca agggacgctt gtttggtggg attctcttcc catttatgaa
     3061 tgggatgagt ttggtcaata ctgccattgt tatctttgca ggttccagca ttgttctcaa
     3121 cgatagttcg ctagaaacag ctgccgcact tggtctggtg gtgacttttg ttcaatattc
     3181 gcaacagtat taccagccaa tcatgcaggt tgctgccagc tgggcagaat tgcagctagc
     3241 tttcacagga gctcatcgta ttcaggaaat gtttgatgag cctgaggaag ttcgccctca
     3301 aaacgctccg ctatttatcg aattaaaaga aggtgttgaa atcaaggaca ttgactttgg
     3361 ctacctgccg ggtcagaagg tcttggacaa ggtgtcaatc tctgctccta agggcaaaat
     3421 ggtggcagtc gttggtccga cgggatctgg taagactacc attatgaact tgattaaccg
     3481 cttctacgat gtcaatggtg gtagtgtggc ttttgacggt cgtgatattc gggaatatga
     3541 cttggacagc ttgcgggata aggtcggcat tgtcttgcag gagtcggttc ttttctcagg
     3601 tactattgcg gacaatattc gctttggtga tgagagcatt tcgcaggaaa tggttgaaac
     3661 cgcagctcgt gccacccata tccacgactt tatcatgagc ttgccagagg gttatgaaac
     3721 ctttgtgact gatgatgaga atatcttctc gacaggtcag aaacagctga tttccattgc
     3781 ccgtacgctc ttgacagatc cacaagtctt gattttggac gaagcaacct caaacgttga
     3841 tacggtgacg gaagccaaaa ttcaaaaggc tatggaggct attatcgctg gacggaccag
     3901 cttcgtcatt gcccaccgcc tcaaaaccat cctcaatgcg gacgaaatca tcgtcctcaa
     3961 agacggaaaa gtgatcgagc aaggcaacca cagccaactc ctcaagctca acggcttcta
     4021 tgccgaactc taccacaacc agtttgtgtt tgagtaaagt tgaaaacccc agccactagg
     4081 ttggagtttt gcttttagcc tacgaataaa ttataataga gagcgtatta tgcaggaaga
     4141 aattgaaggg aaactactat gaaaatccgt ggttttgaac tggtcagcca gtttactgat
     4201 gaaaatttat tgccaaaacg tgagaccgct catgcagcag gttatgacct gaaagctgcg
     4261 gagaggatca gcttagagcc tggtgagatt aagctggttc caacgggtgt caaggcctat
     4321 atgcaggcaa acgaggtcct ctatctctac gaccgttcgt ccaaccctcg caagaagggg
     4381 ctggttttga ttaactcagt tggagttatc gacggcgact actatggcaa tccagccaat
     4441 gaaggtcata tctttgccca gatgcgaaac atcacagagg aaactgtcgt ggtggaagct
     4501 ggcgagcgaa tggtgcaggc tgtttttgca cccttcctct tggctgacgg cgaccaggcc
     4561 gacggcgttc ggacaggtgg atttggctcg acggggaaat agactactat gcagattctc
     4621 tttgtgcggc attccgaacc cgactacagt atgtttgacc agcatgataa tcctcggctg
     4681 tatgcaggtt ttggacggga tttggctcct ttaactgaaa aggggcggac tttagctcag
     4741 gaaattgcta gtaatcctat cttttcccaa gctcaagtag tcgtcgcttc aagcgtcaca
     4801 cgggccttgg aaactgcgac ctacattgct catgcccagc aactacctct tctggtcgag
     4861 cccttttttc atgaatggcg accagatatg acggggcaaa atgccagtca agacgaggct
     4921 gtcttagctc atcgattatt tttggaaaat agcggagcgg tgcctgagtc ttcacctgtt
     4981 cgctatgaga ctgctgcgga gatgagagag cgatttttac aggcccttga aaaatacaaa
     5041 gcctatgacc gaatcgttat cgtctgtcac ggtatgctga tacgccagtt tgttcccaaa
     5101 gaaactatag cctactgcga aatcctagaa tacactctat aggaggaaat gaccatcgct
     5161 aagaaaaaaa caacctttgt ctgtcaatcc tgcgagtacc actcgcccaa gtatctgggc
     5221 cgttgcccca actgtggctc ctggtctagc tttgtcgagg aagtggaagt cgctgaagtc
     5281 aagaacgagc gggtcagtct gacaggtgag aagacccgtc ctatgaagct caatgaagtg
     5341 tcgtccattc aagtggcccg caccaagacc aatatggaag agtttaaccg tgtccttggt
     5401 ggcggcgtgg tgccgggcag tctggtcctg attggaggcg atccagggat tggcaaatcg
     5461 accttgctcc tgcaagtatc gacccaactt tcgactattg gcaccgtcct ctatgtgtcg
     5521 ggggaagagt ctgcccagca gattaagttg cgagcggagc gtttgggcga cattgacagc
     5581 gagttctatc tctatgcgga gaccaatatg cagagcattc ggactgagat tgagaaaatc
     5641 aagccagatt tcctgattat cgactctatc cagaccatta tgagccctga catttctagc
     5701 gtgcaaggtt ctgtcagtca ggtccgtgaa gtgaccaatg agcttatgca gattgccaag
     5761 accaacaata tcgcaacctt tatcgtcggc cacatgacca aggaaggcac cctggctgga
     5821 ccgcggacct tggagcacat ggtagacacc gttctctatt ttgagggcga gcgtcaacac
     5881 accttccgta tcttgagggc ggtcaaaaat cgctttggct ccaccaacga aatcggtatt
     5941 tttgaaatgc agtcgcaggg cttggtcgaa gttctcaatc caagtgaggt ctttctggaa
     6001 gagcgtctgg acggagcgac tggctcggct attgtcgtga ccatggaggg cacccgccct
     6061 atccttgccg aagtgcaggc tctggtgacc ccgaccatgt ttggcaatgc caagcggacc
     6121 acgacaggct tggatttcaa ccgtgccagc ttgattatgg cggttttgga aaaacgggcc
     6181 ggtctgctcc tccaaaacca agatgcctac cttaagtcag caggcggtgt caaactggat
     6241 gagccagcta ttgacctagc ggtcgcagtt gcccttgcct ccagttacaa ggacaagcca
     6301 accaacccac aagagtgctt tataggcgag attggcctga caggggaaat ccgccgcgtc
     6361 aatcggattg aacaacggat taacgaagcc gccaaattgg gctttaccaa ggtctatgcc
     6421 ccaaaaaatt ccctgacagg tatcaaggtg cccaaggaaa tcaccgttat cagcgtgacc
     6481 accattggcg aagtcttgca gaaagtattc aacttatgaa atcattcggg agtgacagct
     6541 agtcgctcct ctttttgcga caaatagtcg ggaatgtgat aagctaggtc taacctattt
     6601 ctgaaaattt cagaaattct catcagacaa ggaggtccta tgtcttattt tcaaaacttt
     6661 atgaaggcca acaaggccta tgttgacctg catggtgatt accatttgcc tcttcgtcca
     6721 aagaccaagg tggctatcgt gacctgtatg gactcacggc ttcacgtggc tcaggccttg
     6781 ggcttggctt tgggggatgc tcacattctg cggaatgcag gtgggcgcgt gacggaggac
     6841 atgattcgct cgctggttat ttcccagcag cagctcggca cacgggaaat cgtggtgctc
     6901 caccatacag actgcggtgc ccagaccttt accaatgaag aatttgcggt ccaactcaag
     6961 cgagatttgg gagtggatgt ggctggtcag gattttcttc cttttacaga cattgaagaa
     7021 agcgtgcggg aggatattgc tctcttgaaa caatctccgc tcatacctga cgacgttgaa
     7081 atttctggtg cggtttatga tgtggataca ggtcgtatga cagaagttat ataggaatgc
     7141 tcaggaagtt cggtttttcc tgtaaatttt atctgaatga ccgagaaatc cttgacaagt
     7201 ttttttgaat gagataaaat tgtattatca caacagaaca agcggagaga taaatgatgc
     7261 ttggtttatt ctagcttgtt cttggtttat tatggctatc ctgtggttaa caggaccttt
     7321 cgtaaaaaat aggagtcaac tatgtcagac aatcggatga aatatactat cgatagtaat
     7381 atgcagtttc ctttggtgga aatcgccttg gaagctggtg aatcagctta tattcaacag
     7441 gggagcatgg tctaccatac gccgagtgtg accttgaata ccaagctcaa tgcgcgtggt
     7501 ggttcaggtt ttggtaaatt gatgggggcc atcggtcggt caatggtatc aggcgaatct
     7561 atgtttatca cgcaagccat ttccaatagt gacgatggaa aaattgccct tgcgccttca
     7621 acaccaggtc aggttattgc cttggaactt ggggcagagc aatatcgact aaatgatggt
     7681 gccttcctgg cccttgatgg ttctgctcaa tataaaatgg aacgccagag tgttgggaaa
     7741 gctttctttg gtggtcaggg tggactcttt gtgatgacga cagagggacg cggaacactt
     7801 ttggcgaatg cgtttggttc tattaagaag ctaactttgg atggtggaag tatcaccatt
     7861 gacaatgctc atgtggttgc ttggagtcgt gatttggact acaatatcca tatggaaaat
     7921 ggtttcctcc aatctatcgg tacaggtgaa ggaatcgtta atacctttac tggttatgga
     7981 gaaatctatg tacagagttt gaacattgag acctttgctc aggtcattgg caatcatatt
     8041 gtcggtgcag gtggtgatgg tggtggtgga agcacatcgt tgctggatgc gattttttaa
     8101 gaagaaaaac tctgcaattt tcaaaatcat ataataaaaa taaagtccct cgcgtaatgc
     8161 aagggacttt tcttagttta tttctaccac ttacctgtct aattttgcca cttactgaaa
     8221 tgcccttgta attggatgtc gaactggtat aatagagcta tcaaaaagga gggagctatg
     8281 aaagttagga ttgaatttga tgacagctta gatcatgttg aagttgttat ccgaaccagc
     8341 cagctgggac cagagattga acagattcag caagctttgc aacaagttag tcgtccctcg
     8401 cttgtttttt acaaggggag cagcgagtat tttctttcat tgggtgacat acttttcttt
     8461 gaaacggacg gaaccaagat ttttgctcat acaggcgatg atgcctacga ggttaaaatg
     8521 aaactctatg aacttgggga gcatttgccc atctactttt gtcgggtttc taaatcaacg
     8581 attgccaatg ctagagctgt gtattcattg gataagtctt tttcaggaac tagtcggatt
     8641 tccttctatc agacccacaa ggaagtccac gtgtcgcggc attattatca tttattaaaa
     8701 gaaaagttac gagaagtgag gtagggagat gaaacgtcta ttaattggag ctgcagttat
     8761 aggactggcg gttttggtct tgttgaggga ttcattgggt ttgcatttgg caatgccctt
     8821 ttggaccact gtctggtttg tattaacctt tgtgacaggt tttcaccgct tggtaaagtt
     8881 ggattggctt gccagtatct tttgtttcgg cctagctttt atagctgcca actctgtcta
     8941 tgaatgggtg gagtttggga cttggaacat gtttctgtcg cttgtcttac tctgtcttgg
     9001 cttgaaacta atttttaaac caaggaagcg cagactggct catggagttg tcacaggggt
     9061 gattggcgac aagggacgcg atacagcttt tggttcctcg actcgttata tccatgagga
     9121 gaattttatt catgatagtg tggatgtagc ctttggatct agtacagtct attttgatca
     9181 ggcggtgatt ctgggtaata aggcagattt tcatatcgat gcggccttct caaatatcac
     9241 actctatctg cctgctgact ggcaagcggt tgtagagttg gatagcgcca tgtcaacaac
     9301 taacaactac gcatctgagc caaaagaaaa ggttctcttg gtgacgggtg atatggcatt
     9361 ttctacatta aatatttact ctatgtaaaa gaataatcgc agaggaaagt ctatccaggt
     9421 tcctctgtaa aataaaaatt cggaatattc tggaaattat tcaaaagaaa gggattatca
     9481 tgaaaaagat tttgaaaaat gctacctacc tatgggtact gacggcggat atgctgtcca
     9541 attttggcga tgtggtctat tatctggcct tgatgaacta tgttttgctg gtgcccaaca
     9601 gtcgtctggc tctggcgatt gtgaccttct cggaaatctt ccctagcttt atggggctct
     9661 ttacaggcta tctggcagac aagacggtca acaaaatcag cactatcaag ctgaccctac
     9721 tctttcgtgt tcttctatac ctcatcctcg gattctgcat gggctttgag ccagccctct
     9781 ggattgtcgt ggtggctgca actttcaatg tctttgcaga cttcgctggc ttctatgaaa
     9841 acggcctcta tacacctctg ggattacgcg tagcgcccaa agaagagcgg gagcagtact
     9901 cggcctttcg ccagaccgtg accagcctcc tcaatatcgc ctttcaggcc ctctctgccc
     9961 tcttggtcgg cctcctctcc taccaaaacc tggcctttct caatgccggc acctttttag
    10021 ccgccctcct catcatgcag ctgctgacgc cagtctttcg caaactcctg acggagcagc
    10081 ctttgaaaat agcagagcag tcgagccaga ctgagcaaaa aaccaagaga ccaggcattc
    10141 tagcttcctt caagcaagcc atcgtggagc tgcgcaagat acccgagttc cgcctggtcc
    10201 tgattaccac ccctcttatc aacgcctgtg gagcgattct ctatcctatt ctggtcctgc
    10261 tgattagcga agacccaggc cttgtcttcc tcaatgttga aacaaccctt gccctgacca
    10321 ttctgatctt ctttatcgga catattctgg gctcgacctt ggtctttacc cttttcaaaa
    10381 ataccagcat ggtgacgctg gaagtggcag caaccttctc tctacttggc gtttttgtcg
    10441 gaatgttgct acatcaactg ccaattattt tcttcttcct tactacaatg gggattagtt
    10501 caggagctag tggacctaag tttaacgcta agtttgtcaa ttctatgcca gaggagcagt
    10561 tggcgaccat tggcggagcg gtatcaacct attttatgct aggtcaagcc tttactcgac
    10621 tgttggtttc gggtttggtc ttaatcttga ctgtcaatca gattagcgga cttttcctag
    10681 ctgcaactgg tttgttagtc ctctatatcc tctactggct ggcacgtaac caaaaaacac
    10741 ctcaaaatca gtctgtttag actgattttt ctgttatctg ggggtgttct atgctataat
    10801 gttcttgatt gaaattttac aggagagaaa catgactaaa ccaattcgtg tgcgttacgc
    10861 accaagtcca acgggacttt tgcatatcgg aaatgctcgt acagcattgt ttaactatct
    10921 ttttgcccgt catcacggcg gtactttcct tattcgtatc gaggacacag accgcaagcg
    10981 ccatgtggaa gacggcgagc gttctcagct tgaaaacctg cgttggttgg ggattgactg
    11041 ggatgagagt ccagaaactc atgagcaata ccgtcagtct gagcgtttgg atatttacca
    11101 aaagtatgtt gatcagctct tggcagaagg caaggcctac aagtcttatg tgaccgaaga
    11161 agagttggcg gcggagcgtg agcgtcagga agctgcgggt gaaactcctc gctacatcaa
    11221 cgaatacctt ggtatgtctg aagatgaaaa agcggcctac atcgcagagc gtgaggcggc
    11281 tggcattgtc ccaacggttc gcttggctgt caacgaaaca ggtatctaca agtggaatga
    11341 catggttaag ggcgaaatcg agttcgaagg tggcaacatc ggtggtgact gggttatcca
    11401 gaaacgtgac ggctatccaa cttacaactt tgccgtggtg gtggacgatt atctcatgaa
    11461 aatctcgcac gttatccgtg gggacgacca cattgccaat acacccaagc agctcatggt
    11521 ctacgaagca cttggttggg aagcaccaga atttggtcac atgacgctta ttatcaattc
    11581 tgaaactggt aaaaaactgt ctaaacgtga tactaacacc cttcagttca tagaagatta
    11641 ccgtcgtaaa ggttacatgc ctgaagctgt tttcaacttt atcggtcttt tgggttggaa
    11701 cccgggtggc gaggaagaaa tcttctcccg tgagcaattt atccaactct ttgacgagaa
    11761 ccgcctcagc aaatcgccag ctgcctttga ccagaagaaa atggactgga tgagcaatga
    11821 gtacatcaaa aatgctgatt tagaaactat tttcaacctt gctaagccat tcttggaaga
    11881 agcggggcgt ttgacagaca aagcagaaaa attggtggaa ctttacaagc cacaactgtc
    11941 atctgcggat gaaatcgttg gtttgacaga cctcttcttc tcagatttcc cagaattgac
    12001 tgcggaagaa aaagaagtga tggcaggcga aacagtaccg actgttctca atgccctcaa
    12061 ggaaaaattg gaagccatga cggacgaaga tttccaacca gataacatct tcccgcaaat
    12121 caaggctgtc caaaaagaaa caggcatcaa gggcaaaaac ctcttcatgc caatccgtat
    12181 cgccgtttca ggcgaaatgc acggaccaga gttgccaaac accatttacc tgctcggccg
    12241 tgagaaatcc atccagcata ttgacaatat gttgaagagt ttgtaatgaa ataatctccg
    12301 ctgtcctgtg atagtgggga tttgtctgtt aagggggggg ttagcttttt aaaaacaacc
    12361 tctccacata gtctttctgc cttggaatga ctagctctgt ttccaggaaa tttttcaaat
    12421 tttcttgtgg gacccagata taattgctgg tttcgttgga ttggagttgg attgtggatt
    12481 tgtcccagtc ggtttcagcc cagtagcagt ggaaaatgca ctggtcgtca tgggcgacaa
    12541 agtgtgtatg gtggcggagt tggtcagctg tcagctcaat gcctgtctct tcgcggactt
    12601 cgcgcaaaat ggcctgctct gctatttccc caaacaaagc tgaacctcct gctgttgctt
    12661 cataatagtc agggtaggag ggcttggtgc tgtcgcgttt catgaagagg gtactgccgt
    12721 cgtggtggcg gatgatgcac tcgacgacca ggtggtagag gccgtcggga atggattctc
    12781 cgcgtgtgag ggtgtggtcg gtcaagtgac cgtcggctgt gtaggtgttc cagatttcca
    12841 tttcattctc ctgtcaattt tgtagttatt cagtatagca catctgtaag tgcaaagcaa
    12901 catgttttgt ttttgtacgg acaagtgtta tactggggct actaactcaa aggagaaatc
    12961 aatgcaaact ataatcccac atctctggta tgatacagag gcaaaagaag cggtggcttt
    13021 ctatgtagaa ctcttcggtg gcaagattga ctggacctac accattacgg atacgccttc
    13081 gggtgattcg gatttgattc agtttcaact gggcgatatg accttggcgg ctattagtgc
    13141 gggtccatac tttaagctca atgagtccat gtccctcatg gtcaatgtag ctagcaagga
    13201 tgaagtgaca cgtttgtacc aagtcttgtc agaaggcggt cgtgtgctca tgcctttggg
    13261 agaatatcct ttcagccctt actatgtctg gttggaagac cgctttggtc tgtcttggca
    13321 actgtcttat gcaccggact tggacaagcc ttatcagttt gacatctgcc tgctcttctc
    13381 gcaggaacag gttggtttgg cccagcctat gttggattac tacaaggata agctgcatca
    13441 agctcgtctt ggtcgcttgt cttactatgg cgaaggtgag gctgcggtgg cggctgccaa
    13501 gttgaattat gcggagcttt ttatcggaga ccaaaaaatt atcgctatgg accacggcta
    13561 cggtggtgtg gcttctttca acgaagcctt ctcattcatg gtctatgtag acagtcagga
    13621 agaagcggag agctggtatg aaaaagtgtc tgctgtgcca gaagcggaga tttgcggttg
    13681 ggccaaggac cagtttggga tttcttggca gatcgtgccg cgtattttga tggaggcata
    13741 cgatacggct aatccagaaa aggtcaaggc agtcaatgca gcggtgatga ccatgaagcg
    13801 tttggacatt gcggctattc aagcattgct aaactagcag atgataacgg agactgttct
    13861 gcagtttccg ttttttggtt gaggaaaggt tgatttatag gaattttgat ataatggaaa
    13921 aaagtgtacg aaaggaatgt gtatgaaagc aacagaacga cgtaagaaaa tcctatccct
    13981 tttacgagaa agcccctatc cccttgcagc taattatctg gcgaaagaat ttggagtgag
    14041 tcggcaagta attgttggag atgtagcctt gcttcgtgcg gagggagaag ctgtcttggc
    14101 aactccaaga gggtacttac tccaatcttc tttgccatct actgaaggag cttacattcg
    14161 aaagatagct tgtcaacatg gtccagaaga ggtagaaaaa gaattgacaa tcttgctaga
    14221 gggtggagct caaatactag atgttgaaat tgagcatccc atttacggct tattatcagg
    14281 caagctgaat attgcaagtt tagaagatag ggatcatttt ttggatgcct tgggtcaata
    14341 ccaaggtgtg ttactgagta atttaacaga aggagttcat acacatacag tctctttccc
    14401 atctgtgcaa gcctataatg aactttcagc agctttaaaa catgcaggta ttttactata
    14461 aaatcaataa acattacagg tgtcttgaca catgtaatgt ttttgtttta taatcaaacc
    14521 aatagaaaga gaggtgccta atgtctcaat taacactatc atctaaaaat tcagttaagc
    14581 agctatcaat tagtgcaatt ttaaccgcat ttgccatttt aataccttta atgatgccga
    14641 ttaaaatcat tattggccca gcatcctata cacttgctag tcacattcct ttgtttatag
    14701 ccatgtttat ttcaccagct actgctattt ttgttgcttt aggttctagt ttaggctttt
    14761 ttctcgccgg ttttccaatc gttattgtat ttcgggcgct tacgcatctg ttcttcctta
    14821 ccttaggtgc ggtcttggtc aagcgttttc cgactctcat ggattctaag cgctttttac
    14881 tattaggaat tgggcttaat ctcctgcatg gtctaggaga atatattgtg gtgatggtgc
    14941 ttacttcggg gcaacaaact tctgctacct actggataac gatgcttggc ttggtgggtg
    15001 ttggctcggc tattcatgga ttgcttgatt ttagtttagc ttattatttc tggaaaattt
    15061 taaaagaacg gaaaatttat caaccataat cagttatgat gaggaatata ttttagaagc
    15121 tggagaatat tctctagctt tttttggaaa tttttct
//
LOCUS       DASGBY010000041        15018 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.041, whole genome shotgun sequence.
ACCESSION   DASGBY010000041 DASGBY010000000
VERSION     DASGBY010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15018
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.041"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(32..748)
                     /locus_tag="U1396_000959"
     CDS             complement(32..748)
                     /locus_tag="U1396_000959"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001934215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HEM5342159.1"
                     /translation="MPKDLQEMRQRVYEANIALPAHGLVKFTWGNVSEVCRELGRIVI
                     KPSGVDYEKLSPENMVITDLDGNVVEGDLNPSSDLATHVALYKAWPNVHAVVHTHSTE
                     AVGWAQAGRDIPFYGTTHADYFYGPVPCARSLTAEEVNSAYEKETGAVIIEEFERRGI
                     DPVAVPGIVVRNHGPFTWGKDPAQAVYHSVVLEEVARMNRYTEQINPRVEPAPSYIMD
                     KHYLRKHGPNAYYGQKGDEH"
     gene            complement(748..1611)
                     /locus_tag="U1396_000960"
     CDS             complement(748..1611)
                     /locus_tag="U1396_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HEM5342160.1"
                     /translation="MARPIGIYEKATPKHFTWKERLEFAKELGFDFVEMSVDESDARL
                     ARLEWTKEERLDLVKAIYETGVRIPTICFSGHRRYPLGSNAPALEAKSLETMKQCIEL
                     AQDLGVRVIQLAGYDVYYEEKSPETRERFIKNLRQACDWAEQAQVMLAIEIMDDPFIN
                     SIEKYLAVEKEIDSPYLFVYPDTGNVSAWHNDIYSEFYLGHRSIAALHLKDTYAVTEN
                     SKGQFRDVPFGQGCVDWDNMFAVLKKTNYQGPFLIEMWSENCETVEETRAAIKEAQDF
                     LYPLIEKAGLN"
     gene            complement(1617..2279)
                     /locus_tag="U1396_000961"
     CDS             complement(1617..2279)
                     /locus_tag="U1396_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014622185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HEM5342161.1"
                     /translation="MKHIPNLQVALDHSDLQGAIKAAVSVGHEVDVIEAGTVCLLQVG
                     SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMAAALKA
                     IKEVRGDKGEIQIELYGDWTFEQAQLWLDAGISQAIYHQSRDALLAGETWGEKDLNKV
                     KKLVDMGFRVSVTGGLDVDTLKLFEGVDVFTFIAGRGITEAADPAAAAREFKDEIRRI
                     WG"
     gene            complement(2290..2775)
                     /locus_tag="U1396_000962"
     CDS             complement(2290..2775)
                     /locus_tag="U1396_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5342162.1"
                     /translation="MNLQKSFTENNSIRLGLTAETWQEAVHKAVEPLIDSGAATEEYY
                     DAIIASTEEYGPYYVLMPGMAMPHAQAGVGVLKDSFALITLTKPVVFSDGKEVSVLLT
                     LAATDPKIHTSVAIPQIIALFELENSIERLIACQTPEEVLAMVEESKTSPYLEGLDLE
                     S"
     gene            complement(2838..3116)
                     /locus_tag="U1396_000963"
     CDS             complement(2838..3116)
                     /locus_tag="U1396_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000241478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5342163.1"
                     /translation="MVKVLTACGNGMGSSMVIKMKVENALRQLGVTDFQSASCSVGEA
                     KGLAAGYDIVVASNHLISELEGRTKGHLVGLDNLMDDNEIKTKLQAVL"
     gene            complement(3175..4623)
                     /locus_tag="U1396_000964"
     CDS             complement(3175..4623)
                     /locus_tag="U1396_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5342164.1"
                     /translation="MDFLQTPLNWFSQNILQNPAFFVGLLVLVGYALLKKKPHDVFAG
                     FIKATVGYMILNVAAGGLVTTFRPILAALNYKFQIDAAVIDPYFGLAAANGKIAEEFP
                     NFVSAATTALLIGFGVNILLVALRKVTKVRTLFITGHIMVQQAATVSLMVLFLIPALR
                     NQFGTAAIGIICGIYWAVSSNMTVEATQRLTGGGGFAIGHQQQFAIWFVDKIAPKLGK
                     KEENLDNLKLPSFLNIFHDTVVASATLMLVFFGVILFILGPEIMANPEVITSGAPYNP
                     AKQAFFMYVIQTAFTFSVYLFILMQGVRMFVAELTNAFQGISSKLLPGSFPAVDVAAS
                     YGFGSSNAVLSGFAFGLIGQLITIVLLIVFKSPILIITGFVPVFFDNAAIAVYADKRG
                     GWKAAAILSFISGVLQVALGAVCVGLLELSGGYHGNIDFEVPWLPFGFAFKYLGIAGY
                     VLVCLFLLAIPQLQFAKAKDKEAYYRGEAQAE"
     gene            complement(4971..11276)
                     /locus_tag="U1396_000965"
     CDS             complement(4971..11276)
                     /locus_tag="U1396_000965"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pullulanase"
                     /protein_id="HEM5342165.1"
                     /translation="MKKKSVQNMKRTGMLEKKQIFGIRKLNVGVASVGIAAALFLSGA
                     GQLVQAEEVVLPASTSSTTLSEQDGGAVEATTTAIEATDSMVAEATAVTETADATAPE
                     EAPIEEGSIRLHFENVDETAPESQGLWTWGGVAEPSDSNQWPTDTANFSSSQVDDYGH
                     YVDIKKSETPGTIGYLVLKNGEKITESDQKVELLVPEQNEAWISSDYSVSSYEPLKDE
                     NVLRINYTREDNNYEGWGVWTWGDTTEASDGWPTGAVDFKLGKYGAYVDIPLSNGLDS
                     KLGFLLINQNNPDLAGNKTIDLAFADRKRHSQIFLRNGDDKVYTNPYFIEEKVELDTS
                     KATPGTKNVTVEASVKAPFNYNESGLVSVTVTNPENAEIVKMEVDTSAIGGGLVPIST
                     ELNRVTIKATSSTAPGTYSLPVKVYDKDNGYYETKLDVTITERVKADGEKDWDEQVIY
                     FMMTDRFYNGDTSNDKLVEGTVTNPRGLYQGGDFKGVTAKLDYLKELGVDSIWLTPIV
                     ENIPQNVGSVKDGEYYAYHGYWASNFEKLNPHLGSLADFHELIDAAAEKGINIVVDVV
                     LNHAGYGTEETFAGMVRTKEEDKQGDDQLGSLSGLPDFKTEEAAVRNQLVAWQASWLE
                     RSTTAKGNSIYAFRVDTVKHVDDTTWQHFKNELVDRDPDFHLIGETWGANYKDTKGDL
                     GIGTMDSLLDFGFKDIAKYLVNGQLKAAGKELEERSKVLTSAASLGQFLGSHDEDGFL
                     YSLGGAEKEGNLDKLKLAASLLITAKGQPVIYYGEEVGQSGQNNWPVYDNRYDFDWSK
                     VETSDITDHYQKLLAFRNANSTLLSRGDTSTLAGNDSQGWLISKRSYQDQAAYLVFST
                     NTESKEMALEVSSKDVVVTDAYTGKSYQAIEKGGKWVVQVELPTIGQGGTMLLQTEAG
                     DIVNASVQGATEEPIEAGYFRVHFKTLPSDNLSSLGLWTWDGVEKPSSDVGAWPTGAT
                     NFSTAKQDDYGYYLDIKMKDETASKISLLINNTSGDNITGDKTIERISTKMNEAWFDE
                     NYQLSLYQPLKEGCIRINYFRTDGNYDQKGLWIWGDVTDLTLGDWPNGIDFENQGKYG
                     AYIDVKLTDLPSSIGFLLLDESKSGDDVKIQQKDYSFKDLKNQTQIFLKDDDATIYTN
                     PYFVNNVRVTGVSHVSLTALEAAFTTLEGADKDSILEKLSVTDKNGQTVAVTDLVLDL
                     TSNKVRVLGDFNQENAGYTLKYGNDSFTTTMSWQLKDELYAYDGELGARVRQAGSVVD
                     MTLWSPSADSVAVVLYDKDDQSKVVGKLAMTKGDKGQWDLELNSQSGLGIADYRGYYY
                     HYEITRGGQSVLVLDPYAKSLAEWNSDLADTDPSYRIAKAAIVDPAEVGPSDLNYATI
                     PNFNQREDAIIYEAHVRDFTSDPAISDELTAQFGTFAAFAERLSYLKDLGVTHIQLLP
                     VMSYYFVNELKNAERMSEYASSNSNYNWGYDPQSYFAFTGMYSTDPTDPMKRIEEFKN
                     LVNEIHKQGMGVILDVVYNHTSKTFLFEDLEPNYYHFMEADGTAKSSFGGGRLGTTHY
                     MSRRVLVDSIKYLVDEFKVDGFRFDMMGDHDAEAIELAFTEAQKLNPNIIMLGEGWRT
                     FTGDANQPVQPADQDWMSSTDTVAVFSDEIRNTLKSGYPNEGQPAFITGGAKSVESVF
                     NNIKAQPGNFLADDPGDVIQYIAAHDNLTLFDIIAQSIKKDPSIAENYTEIHQRQRLG
                     NLLVLTAQGTPFIHSGQEYGRTKQFRHPDYKEPVSEDKVPNKAHLLTNADGTPFDYPY
                     YIHDSYDSSDAVNKFDWTKATDEALYPENTRTQAFTKGLIALRKSTDAFRLGTKEEVE
                     QKVSLISIPGQNGIAKNDVVIAYQTIASNGDRYAVFVNADSKERSFVLSDIYKELLKG
                     HVLVDGKRAGIAALTDLVGVTLTDDAVVLAPLTATVIRLPYITTAVPDTAPTAEEKPS
                     LDFTTKERTEEKILPIVEEIRYDASLSTDQSYVLQEGKTGKKVLVYQDVLIDGKVVAT
                     NLLSETVVDSETRIVVKGSMEAKKEAEKPSLSTTAQASGQATSGASKASLPITGDRQS
                     DLALLGLGLAGLGLTVAAQGRTKKSEE"
     gene            complement(11457..12398)
                     /locus_tag="U1396_000966"
     CDS             complement(11457..12398)
                     /locus_tag="U1396_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5342166.1"
                     /translation="MTTLADVARLANVSKMTVSRVINHPEQVTQELRTLVTAAMEELN
                     YKPNVAAKALAQQRTLVVQAVILEKMDVVEPYYIDLLAGIADELNHRNYTLQLVTNPS
                     QITDQCDGYIVTGARKNDYPWLKGLRKPLILFGENQEGLPFVDSDNRLATRSATQFAL
                     SKGYERIVFVGIDLPEAFEKGREEGYKDAMQGRETHLYRLENRSRVAEEFVKNLDYLP
                     ENTCFICASDRLALGVTRGLQALGKSIPNDVGVIGFDGFFLDRMSRPALTTMKQPIRQ
                     MGALSVKHLMTILDGKPLARQGHYCQATLIERETTPQ"
     gene            complement(12763..13509)
                     /locus_tag="U1396_000967"
     CDS             complement(12763..13509)
                     /locus_tag="U1396_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5342167.1"
                     /translation="MIQASGVKLTFGGQQVLKGIDVEVNPGEVVVILGPSGSGKTTLL
                     RSLNFLEKADAGHLVFGEDSYDLAQMTKKEIAGIRKRTAFVFQNYNLFANKTALQNVT
                     EGLIVARKVPKQEAERIGKAALDKVGLSGKYGFYPSQLSGGQQQRVGIARAIATNPEV
                     IYFDEPTSALDPELIGEVLAVMMQLAKEGMTMVVVTHEMGFARAVADRVIFMDGGRII
                     EEGRPEDIFDRPQEERTKQFLARIQKVDVE"
     gene            complement(13519..14178)
                     /locus_tag="U1396_000968"
     CDS             complement(13519..14178)
                     /locus_tag="U1396_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5342168.1"
                     /translation="MTERVWQLLLDSFSQILVPGLLVTIPLTILSFTFGLLIAIGTAL
                     VQIAQIPILKQVARFYIWVVRGTPLLVQLYVIFFGLPSLGIVLDAFPSAVLVFSVNTG
                     AYAAETIRASIESVPKGQLEAGYSVGMSFAQTMRRIILPQAFRVAFPPLSNTLIGLVK
                     DTSLAANITVLEMFMATQQIAARTYEPFALYCEVALVYLLFSTILTKLQAYGEKKLAV
                     Y"
     gene            complement(14191..14994)
                     /locus_tag="U1396_000969"
     CDS             complement(14191..14994)
                     /locus_tag="U1396_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5342169.1"
                     /translation="MKKIAMFTSLLFAGIVLAACNSSAGISNSTDQTLLAQIKEEGVI
                     QIGTEGAYAPYSYHDESGKLVGYDVEVAEAVAEKLGVKVEFVETEWDSMIAGLDAARF
                     DTIANQVGITDERKAKYDFSTPYTYIYGALVTQKDNTDITSFADLSGKKSANSLTSNW
                     ADLARENGAEVVGVDGFSQAVELLNTGRVDATINDNLVYLDYVKQHADAPIKVVTLTD
                     DVSTTAFPVAKGNEDLAKEIDAALAELASEGKLVEISNKYFGEDVSKAK"
BASE COUNT         4080 a         3634 c         3011 g         4293 t
ORIGIN      
        1 cttttccctg ctgttttttt cacacaagaa cttaatgttc atcacccttt tgtccatagt
       61 aggcattggg accatgttta cggaggtagt gcttgtccat gatatagctt ggcgctggct
      121 ccacccgtgg attgatttgt tcggtatagc ggttcatccg agccacttcc tcaaggacaa
      181 cgctatggta aactgcctga gcgggatcct tgccccaggt aaatggtccg tggttacgga
      241 caacaatacc cggaacggcc actggatcaa tacctcggcg ttcaaattcc tcgatgatga
      301 ctgctcctgt ttctttttca taggccgagt tcacttcctc agccgtcaaa gaacgagcac
      361 atggtaccgg accatagaaa tagtccgcat gggtcgtccc ataaaatgga atgtcacgac
      421 ctgcctgagc ccaacccact gcttctgtcg aatgtgtatg cacaacggca tggacatttg
      481 gccaagcctt gtagagggca acgtgggtcg ccaaatcaga cgaaggattg aggtcacctt
      541 ctaccacatt tccgtccaag tccgtaatga ccatattttc tggtgacaat ttctcatagt
      601 ccacaccaga cggcttgatg acgatgcgac caagttcacg gcagacttct gatacgttgc
      661 cccaggtaaa cttgacgagc ccatgagcag gcagggcgat attggcttca tagacccgtt
      721 gacgcatttc ctgtaaatct tttggcatta gttcaacccc gctttctcaa tcaatggata
      781 gaggaaatct tgtgcctcct tgatagctgc tcgtgtttcc tcaaccgttt cacaattctc
      841 tgaccacatt tcaatcaaga atggaccttg gtagttggtc tttttcaata ctgcaaacat
      901 attgtcccag tccacacagc cctgaccgaa tgggacatca cggaattgac ctttggaatt
      961 ttcagttacc gcataggtat ccttgaggtg aagggctgcg atagaacggt gtcccagata
     1021 aaattcgcta taaatgtcat tatgccaagc agacacgttt cccgtatctg gatagacaaa
     1081 gagataaggc gagtcgattt ctttttcaac agctaggtat ttttcaatgg agttgataaa
     1141 tggatcatcc ataatttcaa tggccaacat gacctgagcc tgttctgccc agtcgcaagc
     1201 ctgacggaga ttcttgatga aacgctctct ggtttcaggt gatttttcct cgtagtaaac
     1261 atcatagcca gccaactgga tgactcgaac gcccaaatcc tgagccagtt cgatacactg
     1321 tttcatggtt tctaaggact tggcttcaag tgcaggggca ttggagccaa gcgggtagcg
     1381 acggtgacct gagaaacaaa tggtcggaat gcggacacct gtttcataga tggccttgac
     1441 caagtctaaa cgctcttcct tggtccactc caaacgagcc aaacgagcgt cgctctcatc
     1501 caccgacatt tccacaaagt cgaaacctaa ttctttggca aactccaagc gttccttcca
     1561 tgtgaaatgc ttgggcgttg ccttttcata tattccgatt ggtcgtgcca taggccttac
     1621 ccccagatac gacggatttc gtctttaaat tcacgcgccg cagctgctgg atctgctgct
     1681 tctgtgatac cgcgacctgc gataaaggtg aagacatcta caccctcaaa gagtttgagg
     1741 gtatccacat caagaccacc tgttacagaa acacggaagc ccatgtcaac caattttttc
     1801 actttattga ggtctttttc accccaggtt tcgccagcaa ggagggcgtc acgcgattgg
     1861 tggtaaatcg cttgggaaat acctgcgtcc aaccaaagct gagcttgttc aaacgtccaa
     1921 tcaccgtaaa gttcgatttg gatttcaccc ttgtcgccac gcacttcctt gatagccttc
     1981 aaagcagctg ccatagttgg aatagttgct gaacaaatac aagtcatcca gtccgcacca
     2041 cgaacagcat tgtttttagc cacagtacca cccgcatccg cacacttggt atctgcaacg
     2101 ataattttgt ctgggaagag gctacgaaga acttctacca attcgctacc aacttgaagc
     2161 aaacaaacgg tacctgcctc gataacatcc acttcatgac caacggagac agctgcttta
     2221 atcgctccct gcaagtctga atggtcaagg gcgacttgta aatttggaat atgtttcatg
     2281 ttttttctcc taactttcta aatctaaacc ttctaggtaa ggactggttt tggactcttc
     2341 caccattgcc aagacttcct caggagtttg acaagcaatc aaacgctcaa tcgaattttc
     2401 caattcaaag agggcaatga tttgtggaat agctacggat gtatgaatct ttggatcggt
     2461 agctgcaaga gtgagcagaa cagacacttc tttcccatct gagaagacga ctggttttgt
     2521 caaggtaatc aaagcaaagg aatccttcaa gacgccgaca cctgcttggg cgtgaggcat
     2581 agccatacca ggcatgagca catagtaagg tccatattct tcagttgatg cgatgatcgc
     2641 gtcgtagtat tcttctgtcg cagcaccgct gtcaatcaag ggctcaacag ccttgtgaac
     2701 agcctcctgc caggtttccg ctgtcaatcc caagcgaatg gaattatttt ctgtaaatga
     2761 tttttgtaaa ttcatagttt ttcccttcta cacgctatat gaaaggggga gggaaactcc
     2821 ctacccctaa cggctattta tagcactgct tgtaattttg ttttgatttc gttgtcgtcc
     2881 atgaggttgt caagaccaac caaatgacct ttcgtgcgac cttccaactc agaaatcaag
     2941 tggttagagg ctacgacaat atcatatcct gccgctaaac cttttgcttc accgactgag
     3001 caagaagctg attgaaaatc tgttacgccg agttgacgaa gggcgttttc taccttcatc
     3061 ttgatgacca tagatgagcc catgccattt ccgcaggctg ttaaaacttt aaccataatt
     3121 tcactcctat tttattttta atacattatg ctctgatttt acagaccaag gatactattc
     3181 tgcttgtgcc tcaccacgat agtatgcttc cttatctttt gctttcgcaa attgaagttg
     3241 cggaatagcc aataagaaga ggcagacaag aacataacca gcaataccta ggtacttaaa
     3301 tgcaaatcca aatggtaacc atggcacttc aaagtcaatg tttccgtggt aaccaccgct
     3361 caattcaagc aagccaacgc agactgcacc aagagcaact tgaaggacac ctgagatgaa
     3421 ggaaaggatg gctgccgctt tccaaccacc acgtttgtca gcgtacactg cgatagctgc
     3481 gttatcgaag aatacaggta cgaaaccagt gatgatgagg attggactct tgaagacaat
     3541 caagaggacg attgtaatca actgaccgat taaaccgaag gcaaaacctg aaagaactgc
     3601 gttagatgaa ccgaagccgt aagaagctgc aacgtccacc gctgggaatg aaccaggaag
     3661 caatttgctt gagatacctt ggaaggcatt tgtcaattct gctacgaaca tgcggacacc
     3721 ttgcatcaaa atgaaaagat atactgagaa ggtgaaggct gtttgaatca catacataaa
     3781 gaaggcttgt ttagctgggt tgtatggagc acctgaagtg ataacttctg gatttgccat
     3841 gatttctgga cccaagatga acaaaatcac accgaagaac acaagcatca atgtcgctga
     3901 agcaacgact gtatcgtgga agatgttgag gaagctaggt agcttcaagt tatccaagtt
     3961 ttcttctttt ttaccaagtt ttggtgcaat cttatcgaca aaccagattg cgaattgttg
     4021 ttggtgaccg atggcaaatc caccgccacc tgtcaatctt tgcgttgctt caactgtcat
     4081 atttgagctg actgcccagt agataccaca gatgataccg atcgctgctg taccgaattg
     4141 gttacgaaga gccgggatga ggaagagcac catcaatgag actgttgccg cttgttgtac
     4201 catgatgtgt ccagtgatga acagagtacg tactttggta accttacgta gtgccaccaa
     4261 gaggatgttg acaccgaaac caatcaagag tgctgtagta gctgctgata cgaaattagg
     4321 gaactcctca gcaattttcc catttgctgc tgcaagacca aagtaagggt caataactgc
     4381 cgcatcaatt tggaacttat agttcaaggc cgccaaaatc ggacggaagg ttgttaccaa
     4441 accaccagcc gctacgttca aaatcatata gccgactgtc gctttgataa accctgcaaa
     4501 aacatcatga ggctttttct ttaagagggc atagcccacc aatactaaaa gacctacgaa
     4561 gaaggctgga ttctgcagga tattctgtga gaaccagttt aatggggttt gaaggaaatc
     4621 catttttcat tctccttttt tgaaatgatt tttatggttt tattataagt tatgtaagcg
     4681 gaaacaaaaa gaccaaataa agcacaggct tgtgttcact attggactat ttccgaactt
     4741 taatggctga tttaatcaga attcctccct atagttcacc agcccattta ttctaataat
     4801 caataaatag acgttatttc ccctaaaaat ttaaaagaac ctcaaaaaac ataaaagaag
     4861 aggttggttt gaaaccaacc tcttctagag ggaagtgata ctctcaactc ttgtatttat
     4921 aagacattca caagattttg agcaatgctc ctctggagag ccaaatatta ttactcttct
     4981 gattttttag ttcttccttg cgcagcaact gtcaaaccaa gtccagcaag tccgagacct
     5041 agaagtgcca aatcgctttg tcggtcaccc gtaatcggca gactcgcctt gcttgcacca
     5101 cttgtcgctt gtccagatgc ttgagcagta gtagaaagac tcggtttttc agcctctttc
     5161 ttagcctcca tactgccttt cacaacaata cgtgtttcgc tatcaacaac tgtttctgat
     5221 aacaaattag tagcaactac cttaccatca atcaagacat cctgataaac cagaactttc
     5281 ttaccagttt tgccttcttg aaggacataa gattgatcgg tagagagact tgcatcatag
     5341 cgaatttcct ctacgatagg aagaattttt tcctctgtac gttccttggt agtaaagtct
     5401 agacttggtt tttcttcagc agtaggcgct gtatctggaa ctgccgtagt gatgtaaggc
     5461 aagcgaatca ccgttgcagt caacggtgca agcacaactg catcatctgt caatgtcaca
     5521 cctaccaaat cagtcagcgc tgctattcca gcccgcttac catcgaccag cacgtgaccc
     5581 ttaagcaatt ctttgtaaat atcagaaaga acaaagctgc gctccttact gtcggcgtta
     5641 acaaagacag catagcggtc cccattgctt gcaatggttt gataggcaat gaccacatca
     5701 tttttggcaa tgccattttg acctggaatt gaaatcaagc taaccttctg ttcaacttct
     5761 tcttttgttc ccaaacggaa ggcatctgta gatttgcgca aggcaatcaa tccttttgta
     5821 aaggcctgag tacgggtatt ctctggatag agcgcctcat ctgtcgcttt ggtccagtca
     5881 aacttgttga ccgcatccga tgaatcgtaa gaatcatgaa tgtagtatgg atagtcaaat
     5941 ggcgtaccat ctgcatttgt caacaaatga gctttgttcg gtaccttgtc ctctgaaaca
     6001 ggttccttgt aatcaggatg gcggaactgt ttggtccgtc catactcctg accagaatga
     6061 ataaacggtg tcccttgagc agtcaagact agcaaattac ccaaacgttg acgttggtga
     6121 atttcagtgt aattttcagc aattgatgga tccttcttga tggactgagc gataatatca
     6181 aagagggtca agttatcatg cgcagcaata tactggatca catcacctgg atcatctgcc
     6241 aagaagttgc ctggttgtgc cttgatgtta ttgaagacag attctacact cttagcaccg
     6301 cctgtgataa aggctggctg accttcgttt ggataaccag atttaagtgt attgcgaatt
     6361 tcatctgaga ataccgcaac cgtatctgtt gaactcatcc agtcttggtc cgctggctga
     6421 acaggctgat tggcatcacc tgtaaaggtt ctccatcctt caccaagcat aatgatgttt
     6481 ggattgagtt tttgtgcctc ggtaaaggcc agctcaattg cttcggcatc atggtcaccc
     6541 atcatatcaa agcggaaacc atctacttta aactcgtcca caagatactt gatagaatca
     6601 acgaggacac ggcgactcat ataatgagtt gttccgagac gaccaccacc aaagcttgat
     6661 ttagccgtac catctgcctc catgaagtga taatagtttg gctctaagtc ttcaaataag
     6721 aaggtcttag aagtgtggtt atagaccaca tccaaaatca cacccatgcc ttgtttgtgg
     6781 atttcattga ccaggttttt gaattcctcg atgcgtttca ttggatcggt cggatctgta
     6841 gaatacatac ctgtaaaggc aaagtagctc tgtggatcat agccccagtt gtagttgctg
     6901 ttgctagaag catactcact catccgctct gcatttttca attcattgac aaaatagtag
     6961 ctcataactg gtagcaactg aatatgggtc acacccaagt ctttgaggta gctgagacgc
     7021 tctgcaaagg ccgcaaaggt accgaactga gctgtcaatt catcagaaat agcaggatcg
     7081 gatgtgaagt cacggacgtg agcctcatag ataatagcat cttcacgctg attgaagtta
     7141 ggaattgtgg catagttcaa atcacttgga ccaacttctg ctgggtccac aatcgcagct
     7201 tttgcaatcc gataagatgg atctgtatct gccaaatcac tattccactc cgctaaagat
     7261 ttagcatatg ggtctaaaac aagaacagat tgacccccgc gagtgatttc ataatggtag
     7321 tagtaaccac gatagtccgc gataccaaga cctgattgac tgttcaattc gaggtcccat
     7381 tgtcccttat cccccttggt catggccaat ttaccgacca ccttagattg gtcatcctta
     7441 tcataaagaa cgactgccac actgtctgca cttggagacc atagggtcat atcaacgaca
     7501 ctaccagcct gacgcacacg cgcaccaagc tctccatcat aagcatagag ctcatccttc
     7561 aactgccagc tcatagttgt tgtgaagcta tcattgccat atttgagggt atagcccgca
     7621 ttttcttggt tgaaatcccc gaggactcgc accttgttgc tggtaaggtc caagacaaga
     7681 tccgtcacag caactgtctg accattctta tctgttacag acaatttctc caagatgcta
     7741 tccttatccg caccttccaa tgttgtaaag gctgcttcta aggctgttag gctaacgtga
     7801 gaaacacctg tcacacggac attattgaca aaataagggt tggtgtaaat agtcgcatca
     7861 tcatccttga ggaagatttg tgtctgattt ttcaaatctt taaagctata atctttctgc
     7921 tgaatcttca catcatctcc tgacttgctt tcatccaata gcaagaagcc aatggaactt
     7981 ggtaaatctg tcaatttgac atcgatatag gcaccgtact tgccttggtt ttcaaaatca
     8041 ataccatttg gccagtcacc caaggtaagg tcagtcacat caccccaaat ccagagacct
     8101 ttttggtcat aattgccatc ggtacggaag taattgatac ggatgcagcc ttcttttaga
     8161 ggttgataga ggctgagttg gtagttttca tcaaaccaag cttcattcat cttggtgcta
     8221 atccgttcaa tggtcttgtc acctgtgatg ttatcaccag aagtgttatt aatcaacaga
     8281 ctaatcttgc tggctgtttc atctttcatc ttgatgtcca gataatagcc ataatcatcc
     8341 tgcttagcag tactgaaatt ggttgcacct gttggccaag caccaacatc tgacgatggt
     8401 ttttcgacac catcccatgt ccataaacct aggctagata aattatcaga tggtagagtt
     8461 ttaaagtgaa cacggaagta acctgcttca attggttctt cagttgctcc ttgcacactt
     8521 gcattgacga tgtcacctgc ttctgtctga aggagcatgg tgccaccttg accgattgtt
     8581 ggaagttcga cttgaacaac ccatttacca cctttctcga tagcttgata agattttcct
     8641 gtgtaggcat ctgtgacaac tacatcttta ctagatactt caagcgccat ttccttgctc
     8701 tcggtattgg ttgagaagac aagataggct gcttgatctt ggtaactgcg tttgctgata
     8761 agccaacctt ggctatcatt tccagcaagg gtgcttgtat caccacgtga gagcaatgtt
     8821 gaattggcat tgcggaaagc caataatttc tgatagtggt ctgtgatgtc gctagtctct
     8881 accttgctcc aatcgaaatc gtaccggttg tcataaactg gccagttgtt ttgcccagat
     8941 tgccccactt cttcaccgta gtaaatgact ggctgacctt tagctgtaat caaaagacta
     9001 gcagccaatt tcagtttgtc cagatttcct tctttttctg cgccaccgag actgtagagg
     9061 aaaccatctt cgtcgtgact gcccaagaat tgacccagag aagctgcgct agtcaaaacc
     9121 ttgctacgct cttctagctc ttttccagct gctttcagtt gaccattgac caagtactta
     9181 gcgatatcct tgaagccaaa gtccaacaag ctgtccatag taccgattcc caagtcaccc
     9241 ttggtatctt tatagttagc tccccatgtt tctccaatta agtggaagtc aggatctcta
     9301 tctaccaatt catttttgaa atgttgccat gtggtatcat caacgtgttt gactgtatcg
     9361 acacggaaag catagataga gttgcccttg gcagttgttg agcgttccag ccaagatgcc
     9421 tgccaagcaa ccaactgatt gcgaacagca gcttcttctg tcttgaagtc cggtaatcca
     9481 gataatgagc ctaattggtc atctccctgc ttgtcttctt ccttagtccg taccatacct
     9541 gcaaaggttt cttctgtacc atagccagca tggttcagca ccacgtcaac aacaatattt
     9601 ataccttttt ccgccgcagc atcaatcaat tcgtggaaat cggctaaact tcccaaatgc
     9661 ggatttagtt tctcaaaatt ggatgcccaa taaccatggt aagcatagta ctctccatct
     9721 tttacgctac caacattctg tggaatattt tccacaatcg gagtcaacca gatagaatcc
     9781 acacccaatt ctttcagata gtccagcttg gctgtcactc ctttgaagtc accgccctgg
     9841 taaagaccgc gtgggttggt gaccgttcct tctaccagct tatcattgct ggtgtctcca
     9901 ttatagaaac ggtctgtcat catgaagtag atgacttgct cgtcccagtc tttttcacca
     9961 tctgccttga cacgctctgt aatggtcaca tccaattttg tttcgtagta accattgtct
    10021 ttatcataga cttttacagg aagactatat gtacctggcg ctgtgctaga cgtcgcttta
    10081 atggtcacac gattgagctc agtagagatt ggcacaagac ctccgccgat ggcacttgta
    10141 tcaacttcca ttttgactat ttcagcattt tcagggttgg tgacagttac agataccaag
    10201 ccgctttcat tgtagttgaa tggtgctttc acacttgcct caacagtcac attttttgta
    10261 cccggagtag ctttgcttgt atctaattct actttttctt cgataaagta tggatttgtg
    10321 taaactttgt cgtcaccgtt tcgaaggaaa atttggctat gccgtttacg gtctgcaaag
    10381 gctaaatcaa tggttttatt gcctgccaaa tctggattat tctgattgat tagcagaaat
    10441 ccaagcttgg aatctaaacc attcgagagg ggaatgtcaa cataagcgcc atatttacca
    10501 agtttaaagt caacggcacc tgttggccag ccatcactcg cttcagtcgt atcgccccaa
    10561 gtccaaacgc cccaaccttc ataattattg tcttcacggg tgtagttgat acggaggaca
    10621 ttttcatctt tgagcggctc atagctagac acgctataat cactagagat ccaagcctca
    10681 ttttgttccg gaacaagaag ctccactttt tggtccgatt ctgttatttt ttccccattc
    10741 ttgagaacca gataaccaat cgttcctggt gtctcagatt ttttaatatc aacgtaatgg
    10801 ccgtagtcat ctacctgact gcttgaaaaa ttcgctgtat ccgttggcca ttgattacta
    10861 tcggacggct ctgccactcc tccccaagtc caaagtcctt gactttctgg tgctgtttca
    10921 tctacatttt caaagtgcag acgaatgctg ccttcttcga taggagcttc ctctggagca
    10981 gttgcatcgg ctgtttctgt taccgctgtc gcttcagcta ccatagaatc tgtagcttct
    11041 atcgcagttg tggtcgcttc taccgcgccg ccatcctgtt ccgaaagagt cgttgaacta
    11101 gttgacgcag ggaggacaac ttcctctgcc tgcactagtt gacctgctcc acttaaaaac
    11161 agagcagccg caatcccaac agaggctaca cctacattta gtttacgaat gccaaaaatc
    11221 tgtttcttct ctagcatccc tgttcgtttc atattctgaa cggatttctt tttcatagac
    11281 tcctccatat aaataagttt gaattgtaca ctaccagtat atacaattcc aaggattctt
    11341 tgcaaacgtt ttcttaagtg ttagcggtaa caagttttgg gccactatct aacaaaaata
    11401 gaataaatag ctcccccttc ttttgctcct agaccgccca ctgaccaaaa aagagactac
    11461 tgaggtgtag tctccctttc aattaaggtt gcctggcagt aatgcccctg tctagccaga
    11521 ggcttgccat ccaatatcgt cattaaatgt ttgacgctaa gagcccccat ttgacgaatc
    11581 ggctgcttca tcgttgtcaa ggctggtctg gacatccgat ctaaaaagaa gccgtcaaaa
    11641 ccaatcaccc caacgtcatt cggaatagac tttcctagag cttgtaaacc tcttgtaacc
    11701 ccaagagcga gacgatccga tgcgcagata aaacaggtgt tttctggtaa ataatcaaga
    11761 tttttcacaa attcttccgc aacacgagaa cgattttcca atcgatagag atgagtttct
    11821 cggccctgca tcgcatcttt gtagccttct tctctccctt tttcaaaggc ttctggcaag
    11881 tcaattccta caaaaacaat cctctcataa ccttttgata aagcaaactg ggttgcggac
    11941 ctagtcgcca aacgattgtc tgaatctaca aaaggaaggc cttcttgatt ctccccgaat
    12001 aaaatcaatg gcttccgcag ccctttcaac caagggtagt cattcttgcg agcaccagtc
    12061 acaatgtaac catcacattg atcagtaatc tgacttggat tggtcaccaa ctgcaaggta
    12121 taatttcgat gattgagctc atcagcgatt cctgcaagaa ggtcgatata gtacggctct
    12181 accacatcca tcttttcgag aatgacagcc tgaacaacca gtgtccgttg ctgggccaag
    12241 gccttggccg ccacatttgg cttatagttt aattcttcca tcgcagctgt tacgagcgtc
    12301 cgcagctctt gtgtaacttg ttctggatgg ttgatgacac gcgaaacagt catctttgat
    12361 acattggcta acctagccac atcggctaat gtcgtcatag aactcctccc taattctatt
    12421 tctgttgctt atcttttagc aagcaaacag tcaaaattgt gcaaacgttt tctttaggtt
    12481 attatatact atttattact aaaaagtaaa gacctttcga atacatttat cgtcatttag
    12541 ttttccttct attacttcct tagcttcctt gcctaacttc atctatgcct gcggctcatc
    12601 gcctcgtgct aaaagtacta tataagaata tccattccct ctaaacaaaa aatactccaa
    12661 ccgctagacc aatcaatgtc taacaattga agtatctttg tcaaattctg tccattttct
    12721 gtacgattat ggaaataaat aagataaatt aatttgctta gcttactcaa catctacctt
    12781 ttgaatgcga gctaagaatt gcttagtacg ttcttcttgt ggacggtcaa aaatgtcttc
    12841 tggtcgacct tcttcgataa tccgaccacc atccataaat atgactcgat cagctaccgc
    12901 acgcgcaaag cccatttcat gagtcacaac caccatggtc ataccttctt ttgccaactg
    12961 catcatgaca gccaagacct caccgattaa ctcaggatcc aaggccgagg ttggttcatc
    13021 aaaatagatg acctctggat tggtcgcaat ggctctggca atgccgaccc gttgctgctg
    13081 acctcctgat agctggcttg gatagaaacc atatttacca gatagtccca ccttgtccaa
    13141 ggctgcttta ccgattcttt cagcctcttg tttgggtact ttccgagcca caatcagacc
    13201 ttccgtcaca ttttgtaagg cagtcttgtt ggcaaagaga ttatagtttt gaaaaacgaa
    13261 ggctgtgcgc ttgcgaatgc ctgcaatttc cttcttggtc atctgagcca agtcatagct
    13321 gtcctcacca aagactaagt gacccgcgtc agctttttcc aaaaagttta aagaacgaag
    13381 aagagtcgtt tttcccgatc cagacgggcc taaaatgacg accacctcac ctggattgac
    13441 ctctacatca attcctttta acacctgctg accaccgaag gtcagcttta ctccacttgc
    13501 ttgaatcatc tgaacctcct agtaaacggc taacttcttc tcaccatagg cttgaagctt
    13561 ggtcaaaatg gttgaaaaga gtagataaac aagggccacc tcacaataga gggcaaacgg
    13621 ttcgtaggtc cttgctgcaa tctgctgagt tgccataaac atctccaaaa cggtaatatt
    13681 ggcagccagc gatgtatcct tgaccaatcc aatcaaggtg ttggacaagg gcgggaaggc
    13741 cactcgaaag gcctgtggga gaataatccg acgcatggtc tgggcaaaac tcatcccgac
    13801 agaatagccg gcctccaact gccccttagg cacggactcg atagatgccc gaatggtttc
    13861 cgcagcgtag gcacctgtat tgacagaaaa aaccaaaacc gccgacggaa aggcatccaa
    13921 gacaattcct agacttggta gcccaaagaa tatcacatag agttgaacca agagtggtgt
    13981 ccctcgaaca acccaaatat agaaacgagc cacttgtttg agaatgggaa tctgagcaat
    14041 ttgcaccaag gccgtcccaa tagcaattag caagccaaag gtaaaagaca ggattgtcag
    14101 tgggatagtc accaacaatc ctggaacaag tatctgtgaa aatgaatcaa gcaatagttg
    14161 ccatactctt tctgtcattg tttctcctga ttacttagct tttgatacgt cttcaccaaa
    14221 gtatttgttt gaaatttcaa ctaattttcc ttcactagcc aattctgcca aggcggcatc
    14281 aatctctttc gcaagatctt catttccttt tgcaactggg aaggctgttg tcgatacgtc
    14341 atccgtcaag gtcacaacct taatcggtgc atcagcatgc tgtttcacat aatccaagta
    14401 caccaagttg tcattgatgg tagcatccac acgccctgta tttaacaatt caactgcctg
    14461 agagaatcca tccacaccga caacttctgc accattttca cgcgccaaat ctgcccagtt
    14521 acttgtcaag ctgttggctg attttttacc agataaatct gcaaagcttg taatgtcagt
    14581 attatccttc tgtgttacca aggctccata gatgtatgta tatggtgttg aaaaatcgta
    14641 ttttgcctta cgctcatctg taataccgac ttggttagcg atggtatcaa aacgggccgc
    14701 atccaaacct gcaatcatgg aatcccattc tgtttcaaca aattccacct taacacccaa
    14761 tttctcagca acggcttcgg ctacttctac atcataaccg accaatttcc cgctctcatc
    14821 gtggtaagag taaggagcat aggcaccttc agtaccgatt tgaataacgc cttcttcctt
    14881 aatttgtgcc aagagggttt ggtctgtact attcgatata cctgcagatg aattgcaggc
    14941 tgctaacacg atacccgcaa acaataaact tgtaaacata gctattttct tcataattaa
    15001 aacacacttt ctttttca
//
LOCUS       DASGBY010000042        15010 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.042, whole genome shotgun sequence.
ACCESSION   DASGBY010000042 DASGBY010000000
VERSION     DASGBY010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15010
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.042"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(41..967)
                     /locus_tag="U1396_000970"
     CDS             complement(41..967)
                     /locus_tag="U1396_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5342170.1"
                     /translation="MNLSKEKLLFHHYYANWLRIYKEGAIREVTLKKYRMTLQWLIRL
                     APSLLLEDLNRVRYQELINSYAKTHERQTTMDFHHQLKGAILDAVDEGIIERDPTRKV
                     IIKGRLPRKKKTKYLNQFELHQLIQELRLGEELNWDWLILLIAKTGIRFSEALALTTQ
                     DFDFHRQLLTIDKTWNYKGDGGFLPTKNKSSIRKIQLDWQTSTQFANLLQHTQPDDLL
                     FVKKERIYNSTINAILEKRCLSANLPVITIHALRHTHASILLFAGVSIASVARRLGHA
                     SITTTQKTYLHIIRELENQDIDLIMRSLSGLC"
     gene            1061..1663
                     /locus_tag="U1396_000971"
     CDS             1061..1663
                     /locus_tag="U1396_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5342171.1"
                     /translation="MKNFKERKIMKLEELALFTGGSLQVRLDTTSWEDARDYILYNQQ
                     HHQLDGYEVIEEVIDSRTVTTDREVTLLEEGDLLFSLLSGKAVLVRAEHAGLLYTQNY
                     IKIEPIAKLDKVFLLYLINESSAIRRQFYQSLQGSEVMKYTVKQLKSLQLGALPPLDS
                     QQKLGKIYLDGLALRQKRQAYAQGDFLRLTYLLKEVYAHE"
     gene            1656..4862
                     /locus_tag="U1396_000972"
     CDS             1656..4862
                     /locus_tag="U1396_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM5342172.1"
                     /translation="MNELAFETELIQYITTGTITQPEHLEGLEWSVSDSSTLYAVKSK
                     LWTYEPGIKTTEQLWENFRNILWQHNQHRLDKPLSDTEFAQVKQIISDLKTPYEAGQF
                     LYGISGVSELEITLDDGRHTFLTVFDQRKIGGGDTVYQVVNQIRRTPKIPGRRECIFD
                     TTLLINGLPIIQIEEKKDTVDVDKALNQMHQYIQERQYTDIFSTLQILVAIAPNNVRY
                     MANTTAEKFNKDFAFHWQRKSDGSKVRNWKEFADSMLSIPMAHQMATNYMILDGTPQK
                     QMLKVMRPYQVYATQAVIEGIKKVDFELGCNKVGYIWHTTGSGKTITSFKTAWLASRM
                     PKVDKVVFLVDRIALTNQTKDDYLAYDPEAGENSFGSIRETQNTTALARQLTSKDSGI
                     IVTSVQKLDTLVKRKSFKSPDKHIVFIVDEAHRSTGGDSFAGIQKAFKKAAWIGYTGT
                     PNLDDTGASLRTQDIFGPLLHAYTIKNAISDRNVLGFKVDFETTIDQEKLKITYLPDF
                     YRQKYPKWTSAQIEEKIANLSPDDMDDAVTSSVYDENPEHVRLVVEDVFKHWANRSGS
                     GRYNALFTTHVGGGRASTPMAMMYFREFQRINQLHREQGGLVLKVGVTFALNTQNNDS
                     MVESNTGLLEAIAIYNTEFGTSFGLSDVAAYTEDLVSRLNRTAKDKNYLDLVIVVDQL
                     LTGFNAPELNTLYVDRTLKGASLIQAYSRTNRVEDMDKKPFGRVINYRWPAHNEKLMN
                     QALAIYADDSATDLSDAEQKNNNEKNGLVAKPFKEVFAEVKQTVDQLRELTGDFNDIP
                     KSEKKREAMLELLRAYNQGLSKLKQYQPEEVDGVIEGFDYNQPDRFIESLGISVEEEK
                     LLTTVLANELKRTLAKEQKVSIHQIELKMTHIKEVTIDYDKLTELVELLLNQVHEEKM
                     VEAAATRDELDRFASGLEDLNYADQIRQTGDAIYRGDFPTQDMNFAYPVKGLDSQKII
                     QEASRVYIDKKLLAFRIQWGLTEHIRNQELRELLARHRYGQNDLDDTGHLRTLIKEAS
                     RDYQTWAEGDAVKGLSKIQYRNQLRQALYDLADDLVGQ"
     gene            4970..6220
                     /locus_tag="U1396_000973"
     CDS             4970..6220
                     /locus_tag="U1396_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5342173.1"
                     /translation="MTKEKSTVPRLRFPGFTDAWKQRKAMEIFKFVSDKGYADLPILS
                     ASQELGMIRRDEIGIDIKYDKEAVANYKRVLPGQFVIHLRSFQGGFAWSEIEGLTSPA
                     YTILDFKEENSSKFWRNVLTSPNFIKKLETVTYGIRDGRSISYSDFSTLNFVIPTLPE
                     QEAIGSFFSDLDQLITLHQRKLDDVKELKKALLQKMFPKGNGNDFPELRFPEFTDAWK
                     QRKLGEVADFSIKTNSLSRDKLSSYFYEVQNIHYGDILTKYDAILDVCNKELPSIIGS
                     TISDFADALLSEGDIVFADAAEDSTVGKAIEVRNFKGKNVVSGLHTIVARPKVSYAPY
                     YLGYLINSTAYHNQILPLMQGTKVSSISKANLKSTTVVFPTLPEQEAIGSFFSDLDQL
                     ITLHQRQLDHLKLLKKALLQQMFI"
     gene            6233..6901
                     /locus_tag="U1396_000974"
     CDS             6233..6901
                     /locus_tag="U1396_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM5342174.1"
                     /translation="MTYSQDYLDDLLVRMAYHSSGIEGNTISLPETVSIILESTLPGK
                     HKSIREFYEIENHKQAFQALLIALDNGEELSLGLVKDIHALLMDRLQHDRGQFKSVQN
                     AIIGATFKTASPEETPFLMQQWVDNANYRLGLPLEIAELLEVLADVHIQFERIHPFSD
                     GNGRTGRLILMFQSMLKLGAPVLISKEDRALYMELLAEQDVTGLSQLLKRSLEFEQER
                     KKQF"
     gene            6985..7500
                     /locus_tag="U1396_000975"
                     /pseudo
     CDS             6985..7500
                     /locus_tag="U1396_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942557.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
     gene            7545..9134
                     /locus_tag="U1396_000976"
     CDS             7545..9134
                     /locus_tag="U1396_000976"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEM5342175.1"
                     /translation="MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEH
                     QERFLVEDEIISPAPGETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVA
                     KIDNSEIVASDYQTIFDHFNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSL
                     NSIVKLIDSIEYKNDEGKDILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT
                     LGLEKSDTSFSVYDPTMGSGSLLLTVRNELPQGQHIKFYGQEMNTTTYNLARMNLMMH
                     QVSYSNMILNNADTLESDWPDGVDELGIDQLRSFDAVVANPPYSAKWDNRESKLKDPR
                     FMEYGKLAPASKADFAFILHSLYHLNNTGTMAIVLPHGVLFRGAAEGHIRKLIIEKNY
                     LDAVIGLPANLFYGTGIPTTILVFKKNRQTKDVFFIDASKEFEKGKNQNHLSDDMVEK
                     IVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQLEQDR
                     LEIRALEDKIRQQLKTLGVDF"
     gene            complement(9185..10459)
                     /gene="serS"
                     /locus_tag="U1396_000977"
     CDS             complement(9185..10459)
                     /gene="serS"
                     /locus_tag="U1396_000977"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000884256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEM5342176.1"
                     /translation="MLDIKRIRTDFDGVAAKLATRGVAAETLANIKELDAKRREILVT
                     VEELKAERNTVSAEIAQAKRNKENADDKIAAMQKLSADVKNLDAQLLEIDEELNAIIT
                     VLPNTPHDSVPVGADEEENVEVRRWGTPREFTFEPKAHWDLGEDLDILDWERGAKVTG
                     ARFLFYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTF
                     ELADTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIR
                     LHQFHKVEMVKFATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTY
                     DLEVWIPAQNAYREISSCSNTEDFQARRAQIRYRDAADGKVKLLHTLNGSGLAVGRTV
                     AAILENYQNEDGSVTIPEVLRPYMGGVEVIKP"
     gene            complement(10677..11048)
                     /locus_tag="U1396_000978"
     CDS             complement(10677..11048)
                     /locus_tag="U1396_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003092275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HEM5342177.1"
                     /translation="MAQSQNTSVELQTTGVSYMGFGGKVGKFLIGDKALEFYPDSNVE
                     RYIQIPWSEMTSIGANVSGKAISRHFEIYTEKSRFLFASKDSGKILKIAREHIGNEKV
                     VKLPTLMQTIGRKISNLFAKK"
     gene            complement(11108..12019)
                     /locus_tag="U1396_000979"
     CDS             complement(11108..12019)
                     /locus_tag="U1396_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5342178.1"
                     /translation="MSEKIQLSVSDRKKVWWRSTFLQGSWNYERMQNLGWAYAMIPAI
                     KKLYTKKEDQAAALERHLEFFNTHPYVASPILGVTLALEEERANGAEIDDTAIQGVKI
                     GMMGPLAGIGDPVFWFTVRPILGALGASLALSGNIMGPIIFFLGWNIIRMAFLWYTQE
                     FGYKAGSEITKDMSGGILQDITKGASILGMFILAVLVQRWVSITFAVDLPAKQLSEGA
                     YIVFPEGTVTGAELKGILGQALSGLSLEPTQAQTLQGQLDSLIPGLMGLLLTFLCMHL
                     LKKKVTPITMIIGLFIVGILARFFGIM"
     gene            complement(12037..12846)
                     /locus_tag="U1396_000980"
     CDS             complement(12037..12846)
                     /locus_tag="U1396_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM5342179.1"
                     /translation="MSDITLISAILVVIVAFFAGLEGILDEFQFHQPLVACTLIGLVT
                     GNLAAGVMLGGSLQMIALGWANIGAAVAPDAALASVAAAIIMIKGGDFSTEGIAVATT
                     TAIPLAVAGLFLTMIVRTISVGLVHGADNAAKDANFAAVERYHLFALLLQGLRIAVPA
                     ALLLAIPAEAVQAVLESMPAWLSGGMAVGGGMVVAVGYAMVINMMATREVWPFFALGF
                     AFAAISKLTLIALGVIGVAIALIYLNLSKQGGSGNGGASSNDPIGDILEDY"
     gene            complement(12878..13870)
                     /gene="manX"
                     /locus_tag="U1396_000981"
     CDS             complement(12878..13870)
                     /gene="manX"
                     /locus_tag="U1396_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002308759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM5342180.1"
                     /translation="MSIGIIIASHGEFAAGIHQSGSMIFGEQEKVQVVTFMPSEGPDD
                     LYAKLNAAVDAFDADDEVLVLADLWSGSPFNQASRVAGENPDRKFAIITGLNLPMLIQ
                     AYTERMINAAAGVEEVAANIIKEAKDGIKVLPEELQPAEATPVADAAPVALQGAIPPG
                     TVIGDGKLKINLARIDTRLLHGQVATGWTPASKADRIIVVSDTVAKDELRKQLIKQAA
                     PGNVKANVVPIKKLIEVSKDPRFGNTHALILFETPQEALEAIEGGVEIKELNVGSMAH
                     STGKTMVNNVLSMDKDDVATFEKLRDLGVEFDVRKVPNDSKKDLFELINKANVQ"
     gene            complement(14092..14904)
                     /locus_tag="U1396_000982"
     CDS             complement(14092..14904)
                     /locus_tag="U1396_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5342181.1"
                     /translation="MKKKIIAIDLDGTLLNNDSQLSDYTISTIKKVRQAGHTVLIATG
                     RPYRMAEKFYQQLELDTPMINFNGSLVHIPGKKWQWEQNILIDKKYLLEFLKEEETFE
                     ADFIAGEYKNKFYITQKNLDKIDPALMGVEQITPDTLIKPELITSDPHSILMQTRATD
                     KYELAKEMNAYFKDELEINTWGGPLNILETCAKGVNKATALSYVLNLYQATPSDLIAF
                     GDEHNDVEMLDLAGTAYAMKNCSDTLRPHADRLTAFANFEDGVARELENLFL"
BASE COUNT         4492 a         2894 c         3349 g         4275 t
ORIGIN      
        1 catacggatt cgtcttttgc tataagtaga aacatggaat ttaacaaagt ccggagagtg
       61 accgcataat taaatcaata tcttggtttt ccaactcacg aatgatatga agataggttt
      121 tttgggtcgt tgttatgctt gcatgaccaa gtcgtctagc aacgcttgcg atagagaccc
      181 cggcaaataa taaaatagat gcatgggtgt gtcgcagggc atgaatggtg atgacaggaa
      241 ggtttgcact taggcaacgc ttttcaagaa tggcattgat ggtagagttg tatatccgct
      301 ctttcttcac gaaaagtagg tcatcaggtt gggtgtgctg taataagttg gcgaattggg
      361 tgctggtttg ccagtcgagt tggatttttc gaattgaaga tttatttttt gtaggtaaaa
      421 atccgccgtc tcctttataa ttccatgttt tatcaatggt caacagctgt cggtgaaaat
      481 caaaatcttg agtagtgaga gcaagggctt cggagaatcg aatacctgtt ttagcaatca
      541 ataagatgag ccaatcccaa ttcagctcct ctccgagacg taattcttgt atcaactgat
      601 gaagttcaaa ttggttgagg tattttgtct ttttctttcg aggaagtctt cctttgataa
      661 tcaccttacg tgtcggatct cgttcaataa ttccttcatc tacagcatct aaaatagctc
      721 ctttcaactg gtgatgaaaa tccattgttg tctgtcgttc atgtgtttta gcatagctgt
      781 taatcaattc ttggtaacga acccgattca aatcttccaa caacagacta ggagctagcc
      841 tgataagcca ctgcaaagtc attctatatt tcttgagagt gacttctcga atggctcctt
      901 ccttgtaaat ccgaagccaa tttgcataat agtgatggaa aagcagtttt tcttttgata
      961 agttcatgac agaacctcct ttttaatttt taaaaattac ataatttatt gacagatttc
     1021 cgaggagatg atatacttat tttagcgaaa aaatgtaatt atgaaaaatt tcaaagaaag
     1081 gaaaattatg aaactagaag aattggctct ctttacggga ggtagtttac aggttcgctt
     1141 ggatactacc agctgggaag atgctagaga ctatatcctc tacaatcagc aacatcatca
     1201 attggatggt tatgaggtga tagaagaagt gatagatagt cggaccgtga cgacagatag
     1261 agaagtgacc ttgctcgagg agggcgactt actctttagt ttactatcgg ggaaggctgt
     1321 tttagtgaga gcggagcacg caggcttact ctatacacag aactatatca aaattgagcc
     1381 cattgcaaag ctggataaag tcttcttgct gtatctgatc aatgaatcct cggctattag
     1441 acggcagttt taccaaagct tacaggggag tgaggtaatg aaatatacag tcaagcaact
     1501 gaaaagttta cagctaggcg ccttgcctcc tttagatagt cagcagaaac taggaaagat
     1561 ttatttagat ggattagcct tacggcagaa gcgacaagct tatgcgcaag gagatttttt
     1621 acgactaaca tatttgttaa aggaggttta tgcacatgaa tgaattagca tttgaaacag
     1681 aattgattca atatattacg acagggacta ttacacagcc ggagcaccta gaaggtttag
     1741 aatggtctgt tagtgattct tcgaccttgt atgcagtcaa atctaaactg tggacttatg
     1801 agccgggtat caagacaacg gagcaattat gggaaaattt tcgtaatatt ctctggcaac
     1861 acaaccaaca tcgattggac aaacccttga gcgataccga gtttgctcaa gtcaagcaga
     1921 ttatttcaga tctgaagaca ccttatgagg ctggccagtt tttatatgga attagcggtg
     1981 tttccgaatt ggaaattacg cttgatgatg gacggcatac atttttgaca gtattcgacc
     2041 aacgtaagat aggcggtggg gacactgtct accaagtggt gaaccaaatt cgtaggactc
     2101 ctaaaatccc tggacgacga gaatgtatat tcgatacaac cttgttgatt aatggcttac
     2161 ctattattca gattgaagag aaaaaggata cggtagatgt ggacaaggca ttgaaccaaa
     2221 tgcaccaata tatccaggaa cggcaatata cggatatttt ttctaccttg cagattctag
     2281 tcgctatcgc ccccaacaat gttcgctata tggccaatac cactgcggaa aaatttaata
     2341 aggactttgc tttccactgg cagcgtaaat ctgacggtag taaggttcgg aattggaaag
     2401 aatttgcgga ttccatgctc agcattccta tggcccatca gatggcgacc aactacatga
     2461 tcttagacgg gacaccgcag aaacaaatgc tgaaagtcat gcgtccctat caagtttacg
     2521 ccactcaggc ggtcattgag gggataaaaa aagtcgattt tgaactaggc tgtaacaagg
     2581 ttggctacat ctggcataca acaggctcag ggaaaacgat cactagtttt aaaacagctt
     2641 ggctggcaag tcgaatgccc aaggtagaca aggttgtctt tctagtggat cgtatcgctt
     2701 tgaccaatca gactaaggat gattatctgg cttatgatcc agaagctggg gaaaatagtt
     2761 ttggtagtat tcgagaaact caaaatacca cagccttggc acggcagttg actagtaagg
     2821 atagtgggat tatcgttact tctgtgcaaa aattggatac actggtgaag agaaaatcct
     2881 tcaaatcacc agataagcat atcgtgttta tcgttgacga agctcatcgc tcaactggtg
     2941 gagatagttt tgcagggatt caaaaggcct ttaagaaagc agcttggatt ggctatacag
     3001 gaactcccaa cttagatgat acaggtgcta gtctgcggac gcaagatatt tttggccctc
     3061 ttcttcatgc ctacactatt aaaaatgcca ttagtgaccg caatgtacta gggtttaagg
     3121 tggattttga gacaaccatc gatcaggaaa aactaaaaat aacttacttg ccagattttt
     3181 atcggcaaaa atacccgaag tggacaagtg cacagattga agaaaaaatt gccaatctaa
     3241 gtccggatga tatggatgat gcggtgactt ctagcgtcta tgatgaaaat ccagagcatg
     3301 ttcgattggt agtcgaagat gtcttcaaac actgggcaaa tcgttctggc agtggccgtt
     3361 acaatgcctt gttcaccacc cacgtaggtg gaggcagggc ctccacaccc atggctatga
     3421 tgtatttccg agagtttcaa cgaatcaatc aactgcatcg agagcaagga ggtctggtct
     3481 tgaaggtggg agtgaccttt gccttgaata ctcaaaataa tgatagcatg gtcgagtcaa
     3541 atactggttt gcttgaagct attgcgatct ataacacaga atttgggacg tcctttggct
     3601 tgtcagatgt tgctgcgtat acagaggact tggttagtcg cctcaataga acagccaagg
     3661 acaagaacta cttagatttg gtgattgtcg tggatcagtt gttgacaggt ttcaatgctc
     3721 ctgagctcaa tactctttat gttgaccgaa ccttaaaagg agccagtctt atccaggcct
     3781 attctcgtac caatcgtgtg gaggatatgg ataaaaaacc ttttggacgg gtgatcaatt
     3841 accgctggcc agctcataat gagaaattga tgaatcaggc cttggccatc tatgcagatg
     3901 atagtgctac cgatttatca gatgcggaac aaaaaaataa caatgaaaaa aatggactgg
     3961 tggctaagcc tttcaaggaa gtatttgctg aagtcaaaca aacggtcgac caattgagag
     4021 agttgacggg tgatttcaat gatattccga agtctgagaa aaagcgtgag gctatgttag
     4081 aattgctccg tgcttacaat caaggactgt ctaagctcaa acagtatcag ccagaggagg
     4141 ttgatggggt gattgaagga tttgattaca atcagccgga ccgctttatt gaaagtttgg
     4201 gaatatctgt agaggaagaa aaacttttga cgacagtctt agccaacgaa ttgaaacgaa
     4261 ccttggcgaa agagcaaaaa gttagcattc accaaattga acttaagatg actcacatca
     4321 aggaagtgac aattgactac gataaattga ccgaactggt tgagctcttg ctgaatcagg
     4381 ttcacgaaga gaagatggta gaagccgcag ctaccaggga tgaattggat agatttgcaa
     4441 gcggtttgga agatctcaac tatgctgacc aaatccgtca aacaggggat gcaatctatc
     4501 gaggtgattt tccgacacaa gatatgaact ttgcttatcc agtcaagggg cttgatagtc
     4561 agaagattat ccaagaagct tcgcgtgttt atattgacaa gaagctcctt gcttttcgaa
     4621 tccaatgggg cttgacggag catatccgca accaagaact acgagagttg ttggcgagac
     4681 atcgatatgg tcagaatgac ttggatgata ccggacactt acgtaccttg ataaaagaag
     4741 ctagtcgcga ttaccagacc tgggcagaag gtgatgctgt taaaggcttg agcaagattc
     4801 agtaccgcaa tcagttgaga caagcactat atgatttggc tgacgacttg gttggtcaat
     4861 aggttgcgat tttgttggat gatagcgtat aatagaatgg aaatcgtccg aaaaattgca
     4921 aaaataactt tcagaaatag aacaaaaaga gagtagaaaa ggagggacta tgacaaaaga
     4981 aaaatcaacc gtaccacgat tgcgcttccc cggattcacg gacgcttgga aacagcgtaa
     5041 ggcaatggag atttttaagt ttgtgtctga caaagggtat gcagatttac caattttgtc
     5101 agcttctcaa gaacttggga tgattagacg agatgaaata ggaattgaca tcaaatatga
     5161 caaggaagcg gtagcgaatt ataagcgtgt tttaccgggt caatttgtaa ttcatcttcg
     5221 atcatttcaa ggaggatttg catggtctga gatagaggga ctgacatcac ctgcctatac
     5281 aatattggat tttaaggaag aaaactcgtc aaaattttgg cgaaatgtgt taactagtcc
     5341 gaatttcata aaaaaacttg aaacagttac atatggaata agggatggac ggagcataag
     5401 ttattctgat ttttcgacat taaattttgt catccccacg ctccccgaac aagaagccat
     5461 cggcagcttc ttttccgacc tagatcagct tattactctt catcagcgaa aattagatga
     5521 tgttaaagaa ttgaagaagg ctttgttaca gaaaatgttt ccgaaaggga atggaaacga
     5581 ttttcctgag ctaagattcc cagaatttac ggacgcttgg aaacagcgta agttggggga
     5641 ggtggcggac ttttccataa aaacaaactc actttctaga gataagttat catcgtattt
     5701 ttatgaagtt cagaacattc attatgggga tattttaaca aaatatgatg ctattttaga
     5761 tgtatgtaac aaagaacttc catcaattat tggaagtacg atttcagact ttgcagatgc
     5821 tttacttagt gaaggagata ttgttttcgc ggatgcagca gaagactcga ctgttgggaa
     5881 agctattgaa gttcgaaatt ttaagggtaa gaatgttgtt tctggtttac atacgatagt
     5941 tgctaggccg aaagtttctt atgcccccta ctatttaggt tatctaatta attcaactgc
     6001 ataccataat caaattttac ctttaatgca ggggacaaaa gtgagctcaa ttagtaaggc
     6061 taatttaaaa tccacgacag tagtgttccc caccctccct gaacaagaag ccatcggcag
     6121 cttcttctcc gacctagatc agcttattac tcttcatcag cgtcagttgg atcatctgaa
     6181 actgttgaaa aaagcattgt tgcagcagat gtttatatag aaagaggtca gtatgacata
     6241 ttcgcaggat tatttagatg accttctggt acgaatggcc tatcattcca gcgggattga
     6301 ggggaatacc atttctctgc ctgagacggt ttcgattatt ttggaaagta cgctacctgg
     6361 caagcacaag agtatccgtg aattttacga gattgaaaat cacaaacaag ccttccaagc
     6421 tctgctaatt gccttagata atggggaaga gctgagtttg ggactggtta aggatattca
     6481 tgccttgttg atggaccgcc tccagcatga tcgggggcag tttaagtcgg tacaaaacgc
     6541 tattattggt gcgaccttca agactgcatc gccagaggaa acgccttttc tcatgcaaca
     6601 gtgggtggat aatgccaact atcgcttggg tttgcctttg gaaatagctg agctgttaga
     6661 ggtgctggca gatgtgcata ttcagttcga gcgtattcac ccatttagtg atgggaacgg
     6721 ccggacagga cggctgattc tgatgtttca aagtatgtta aagctgggag cgcccgtact
     6781 gattagtaaa gaagatcgag ctctttatat ggagttgtta gcggaacaag atgtgactgg
     6841 attatcccaa ttactcaaac gctccttgga gtttgaacaa gaacgaaaaa aacagtttta
     6901 agtcgagttt tcagaaagcg actttcaatc ggaactatta tttttgcctg aaaatacaat
     6961 gaaaacctta ctttcacaac tacttggaaa cagcgtaagt tgggggaggt tgcggaaaaa
     7021 attagtcaaa aaaatctaga tagacagtat gtagaaactt ttacaaattc tgctgaattc
     7081 ggtatcattt ctcagaggga tttctttgaa aaaaatatct ctagtctgga taatataagt
     7141 ggatactata ttgtgaatcc tgatgatttt gtatataatc caaggatttc aaatttagct
     7201 ccagttggtc caataaagcg gaataaattg ggaagagtgg gggttatgtc gcctctttat
     7261 actatattta gattttcaga tatacatttg gattttgtag agaagtattt tgacacaaca
     7321 atttggcata gatatatgga gctgaatggg gatagtggag ctcgctcaga tagatttgcc
     7381 attaaagatt cagttttcaa aggtctacct attcctctcc ccaccctccc tgaacaagaa
     7441 gccatcggta gcttcttttc cgacctagat cagcttatta ctcttcatca gcgaaaatga
     7501 gatttcgagt aaaaaatgaa acaacatgaa aggattacaa aaacatgtca aaaactattc
     7561 aggccattac taatcagatt tggtccatgg ccaatgaatt gcgaggaaat atggatgctt
     7621 cggaatataa gaactatatc ctagccttca tgttctatcg ctatctatct gagcatcaag
     7681 agcgtttctt ggtggaagat gaaattatca gtcctgctcc aggagaaact gttcaggatg
     7741 cctatgcgcg agaagcagtt gggaatgact tggtagagca tttggaaaat acagcttctc
     7801 accttgggta tgccatcgag cctgaagata cctgggcaag actggtagcc aaaattgata
     7861 acagtgagat tgtagcgagt gactaccaga cgattttcga tcattttaac gccaatgtag
     7921 aactcaatcg ggatgctatg gaagatttca gaggcgtctt taatgacatc aatctagggg
     7981 actctcgttt gggcaattca acggttgcgc gtgcaaaatc cttgaacagt attgtgaagt
     8041 tgattgatag cattgagtat aaaaatgacg aaggaaagga tattctggga gaaatctatg
     8101 agtatcttat tggacagttt gccgcttcgg caggtaaaaa aggtggagaa ttttataccc
     8161 cgcatcaagt gagtaagatt ttagccaaga ttgttacttt aggtttggaa aaatcagata
     8221 ctagcttctc tgtttacgat ccaaccatgg gttcagggtc tttgctacta acagtgcgta
     8281 atgaactacc tcagggccag catatcaaat tctatggcca agaaatgaac acaactactt
     8341 ataacttggc gcggatgaac ctgatgatgc atcaggtcag ctacagcaat atgattttga
     8401 ataatgctga taccttagaa agtgactggc cggacggggt cgatgaactt ggaatcgatc
     8461 agctacgtag ttttgatgcg gtcgtcgcaa acccacccta ctctgctaaa tgggacaatc
     8521 gtgagtccaa attgaaggat ccacggttta tggaatacgg taagctagca ccagcctcta
     8581 aagcggactt tgcttttatc ttacacagtc tttatcatct gaataataca gggaccatgg
     8641 ccattgtttt accacacgga gtgctcttta ggggagcagc agaaggtcat attcgcaaac
     8701 tgattattga gaaaaattac ctggatgcag ttattggctt gccagctaac ctgttttatg
     8761 gcacaggcat tccaaccact attctggtct tcaaaaaaaa tcgtcagacc aaggatgtct
     8821 tctttatcga tgcgagcaag gagtttgaaa aagggaagaa ccagaatcac ctttccgatg
     8881 atatggtaga aaaaatagta gagacctatc acaatcgcca gtctgttgac aaatatgctc
     8941 atttggcatc aatagaagaa attgtagaaa acgactacaa tctaaatatt cctcgttacg
     9001 tcgatacttt tgaggaagag gaagagattg atctcgggca agtaacgcag caactagaac
     9061 aagatagact agagattcgg gctctagaag ataagattcg tcaacaatta aagactttgg
     9121 gagtagattt ttagataaat gaaaagagcg agtaggattt ttcctcgctc tttctttgta
     9181 tgtcttaagg tttaatcact tctaccccac ccatgtatgg acggagaact tctggaatgg
     9241 tgacagaacc gtcttcattt tgatagtttt caaggattgc cgcaacggta cgaccaactg
     9301 ctagaccaga accgttgagg gtgtggagca atttgacctt gccgtcagca gcatcgcggt
     9361 agcggatttg ggcacgacga gcttggaaat cctcggtatt tgaacagctt gagatttcac
     9421 ggtaggcatt ttgggcagga atccagactt ccaagtcgta ggtcttagca gctgagaagc
     9481 ccatatcacc tgtacagagg gccaaaacac ggtaaggcaa gcctagtttt tgaaggatat
     9541 tttctgcgtt tgcggtcatt ttttccaatt catcataaga ctgttctggt gtggcaaatt
     9601 tgaccatttc aaccttgtgg aattggtgaa ggcggataag accacgggtg tcacgaccag
     9661 cagaaccagc ttcagaacgg aaagatgggc tcatggctgt gaagtagatt ggcaggtctt
     9721 tttcttccag aatctcgttg cggtagtagt tagtcaacgg cacttccgca gttgggatga
     9781 ggacgaagtt agtgtctgcc aactcaaaag tatcttcctt gaacttagga tattgaccag
     9841 taccgaacat agagtcgtgg ttgaccatgt aaggtgtgat gatttcttgg tagccttctg
     9901 cgatatgctc gtccaacatg aagttgtaga gggcacgttc taagcgagca cccaagttct
     9961 tgtagaaaag gaagcgtgca ccagttactt ttgcgccacg ttcccagtcc aaaatatcca
    10021 ggtcttcgcc caaatcccag tgagcttttg gctcgaaagt gaattcacga ggtgttcccc
    10081 aacggcgaac ctctacgttt tcttcttcat ccgcaccaac tggaacagaa tcgtgcggcg
    10141 tatttggaag aacggtgatg atggcgttta attcttcatc gatttccaaa agctgagcgt
    10201 ctaagttttt cacatccgca gacagtttct gcatggcagc aatcttgtcg tcagcgtttt
    10261 ccttattgcg ttttgcttgg gcaatctccg cagaaacggt gttgcgctct gcttttaatt
    10321 cttctacagt aaccaagatt tcacggcgtt ttgcatccaa ttccttgatg tttgccaagg
    10381 tttcagcagc cacaccacga gtagctaatt tggcagccac tccgtcaaaa tcagtacgaa
    10441 tacgtttgat atctagcata gatgtctcct ttagaataaa aaagcacaga atgagagatg
    10501 ctggagcgat atttaccgcg gttccatcca gcttcacatt ctgtgcactt gattgtattt
    10561 tgataatttc ataacggtag aatttcacaa ctttttccta tctgctcaca gcgaccgcag
    10621 actttctgga aggagccaga tgctacttat ccgtttctac tattatactt gaatttttat
    10681 tttttggcaa atagattcga aatttttctg ccgattgttt gcataagagt cggtaatttc
    10741 acaacttttt cattgccgat atgctcacgg gcaattttaa gaatcttacc agaatcttta
    10801 gatgcaaaca agaatcgact tttctctgta taaatttcaa aatgacggct gattgctttg
    10861 ccagaaacgt ttgcgccaat gctagtcatt tctgaccaag gaatctggat atagcgttca
    10921 acgttgctat ctgggtagaa ttcaagtgcc ttgtcaccaa ttagaaattt accaaccttg
    10981 ccaccaaagc ccatgtagga aacccctgtg gtttgtagtt caacgcttgt attttgtgat
    11041 tgtgccatag tgctctctcc ctagatattc attatatcat aaaaccccgc aagagcgggg
    11101 tccttgatta cataattccg aagaaacgag caagaatacc tacgatgaag agaccgataa
    11161 tcattgtgat tggtgttact ttcttcttaa gcaagtgcat gcagaggaaa gtaaggagaa
    11221 gtcccatcaa accaggaatc aagctgtcca actgaccttg taatgtttga gcttgagttg
    11281 gttcaaggct aagtccgcta agagcttgac caagaatacc tttcaactca gcaccagtaa
    11341 cagtaccttc tgggaagacg atgtaagcac cttctgacaa ttgtttagca ggaagatcta
    11401 cagcgaaagt aatagatacc caacgttgaa caagaacggc aaggatgaac ataccaagga
    11461 ttgaagcacc tttagtgatg tcttgaagga taccaccaga catgtcttta gtgatttcgc
    11521 taccagcttt gtaaccaaat tcttgtgtat accataggaa ggccatacga atgatgttcc
    11581 agccaaggaa gaagatgatt ggtcccatga tatttccaga tagtgcaagt gaagcaccaa
    11641 gagcaccaag gattggacga acagtaaacc agaagactgg gtcaccgata ccagcaagag
    11701 gtcccatcat accgattttc acaccttgga tagctgtgtc atcgatttca gcaccattag
    11761 cacgctcttc ttcaagggca agagttacac caaggattgg tgaagcaacg tatgggtgtg
    11821 tgttgaagaa ttccaagtgg cgctcaagag cagcagcttg atcttctttt ttagtgtaaa
    11881 gttttttgat agctgggatc attgcataag cccaacctaa gttttgcata cgctcatagt
    11941 tccatgaacc ttgaaggaag gttgaacgcc accaaacttt tttacgatcg cttacggaaa
    12001 gttgaatttt ttctgacatg atgaatctcc cttctcttag tagtcttcaa ggatgtcgcc
    12061 gattgggtcg ttagatgaag caccaccgtt acctgatccg ccttgttttg acaagttgag
    12121 gtagataaga gcgattgcaa caccgataac accaagtgcg ataagtgtca atttgctgat
    12181 agcagcaaat gcaaaaccaa gtgcgaagaa tggccatact tcacgagttg ccatcatgtt
    12241 gataaccata gcataaccta cggcaacaac cataccacca ccaacggcca taccacctga
    12301 caaccaagct ggcatagatt caagaactgc ttgaacagct tctgcaggaa ttgcaagaag
    12361 aagagccgca ggaactgcga tacgcaaacc ttgaaggaga agagcaaaca agtggtaacg
    12421 ttctacagca gcgaagtttg catctttagc agcattgtca gcaccgtgta caagaccgac
    12481 tgagatagta cgaacgatca ttgtaaggaa aagaccagct acggcaagag ggatagcagt
    12541 tgttgttgca acggcaatac cttcagttga gaagtcgcca cctttgatca tgatgattgc
    12601 agcagctaca gaagcaagag cagcgtcagg tgcaacagct gcaccaatgt ttgcccaacc
    12661 aagtgcaatc atttgtagag aaccaccaag cataacacct gcagccaagt taccagtcac
    12721 aagaccgata agggtacaag ctaccaatgg ttgatggaat tggaattcgt caaggatacc
    12781 ttcaagacca gcgaagaagg caacgatgac aacgagaatt gcagaaataa gtgtaatatc
    12841 tgacatgttg taatcctttc tatactaaca gatcgattta ttgaacgttt gccttgttga
    12901 taagttcaaa caagtctttc ttcgaatcgt ttggtacttt acgcacatca aattcaacgc
    12961 caaggtcacg caatttttca aaggttgcaa cgtcatcttt gtccattgac aatacgttgt
    13021 taaccattgt tttaccagtt gagtgagcca tagaaccaac gttcaattct ttgatttcaa
    13081 caccaccttc aattgcttca agagcttctt gaggagtttc gaaaagaatc aaggcgtgag
    13141 tgttaccgaa tcgagggtct ttagaaacct caatcaattt cttgattggg acaacgttcg
    13201 cttttacgtt accaggtgca gcttgtttga tgagttgttt acgcaattca tctttggcaa
    13261 ctgtatctga tacaacgatg atacgatctg ctttggaagc aggagtccaa ccagtcgcca
    13321 cttgaccgtg caagagacga gtgtcgatac gggctaagtt gattttcaac ttgccatcac
    13381 cgataacagt acctggaggg atagcacctt gtagtgcaac aggagcagca tcggcaacag
    13441 gagtagcttc agctggttga agttcttctg gaagaacttt gataccatct ttggcttcct
    13501 tgataatgtt tgccgcaact tcttccacgc cagcagcagc gttaatcata cgctctgtgt
    13561 aagcttggat aagcattggc aagtttagac cggtgatgat agcaaactta cgatctggat
    13621 tttcaccagc tacacggctt gcttggttga atggtgaacc actccaaagg tcagccaaaa
    13681 ccaaaacttc atcatcggca tcgaatgcgt ccacggcagc atttagctta gcgtataaat
    13741 catctggacc ttcacttggc ataaaagtaa caacttgtac tttttcttgt tcgccaaaga
    13801 tcattgaacc tgactgatga ataccagcag caaattcgcc atgacttgca ataatgattc
    13861 caatactcat tattgatcct cctaaatttt tcttgttcat gtaaaaacca ttgaatgggc
    13921 tttcatgttc gaactatacc attataaaac gttttcagta catttgtcaa gtaggtttgt
    13981 gttaaaagtg caaaatattt ccaaaacttt tcataatcat gtttcagaaa agtgataaaa
    14041 atatgcaacg aatatgacaa aaacctgaca gtttatcagg ttttttgatg tctataaaaa
    14101 taggttttct agttcacgtg cgacaccatc ttcaaaatta gcaaatgctg tcaatctgtc
    14161 ggcatgtgga cgaagtgtat cgctacaatt tttcatggca taggctgttc ctgctaggtc
    14221 tagcatctca acatcgttgt gctcatcgcc gaaggcaatt aagtcgctag gagtggcttg
    14281 gtagaggtta agaacatagc tcagagcggt tgccttattg acaccttttg cacaagtttc
    14341 gaggatattt aatggtccgc cccacgtatt gatttctaac tcatctttga aataggcatt
    14401 catttctttt gcaagttcat acttatcagt tgcacgagtc tgcataagga tggaatgagg
    14461 atcactagtg attaattcag gtttgatgag tgtatctgga gtaatctgtt caacccccat
    14521 cagagccgga tcaatcttat ctaagttctt ttgagtgatg tagaatttat tcttgtattc
    14581 accagcaata aaatctgcct cgaatgtttc ttcttctttt agaaattcga gtaggtattt
    14641 tttgtcaatt aaaatatttt gttcccattg ccatttcttt ccagggatgt gaactaaaga
    14701 accgttgaaa ttaatcatgg gagtatccag ttctagttgt tggtaaaatt tttcagccat
    14761 tcgatagggg cgacctgtgg cgataagaac ggtgtgtcct gcttggcgga ccttctttat
    14821 agttgagatg gtataatcag ataattggct atcattattg agcaatgtgc cgtccaaatc
    14881 gatagctatg atttttttct tcatatttaa tagcattcct ttctagagtt gttatactag
    14941 tttttaatag taaataatgt ttagctagta gctagattgc tgagaaattg ttttatgcgt
    15001 caaagaatag
//
LOCUS       DASGBY010000043        14941 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.043, whole genome shotgun sequence.
ACCESSION   DASGBY010000043 DASGBY010000000
VERSION     DASGBY010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14941
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.043"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            17..1195
                     /locus_tag="U1396_000983"
     CDS             17..1195
                     /locus_tag="U1396_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5342182.1"
                     /translation="MDLLNRFNKNLNRIEVSMIRQFDQSISDVPGILKLTLGEPDFTT
                     PDHVKEAAKAAIDANQSYYTGMAGLLELRQAAAEFVAEKYNLHYNPENEILSTIGATE
                     ALSASLVAILEAGDTVLLPAPAYPGYEPIVNMVGADIVEIDTTANDFVLTPEMLEEAI
                     IEQGDKLKAVILNYPANPTGVTYSREQIQAFADVLRNYPVFVLSDEVYAELTYTGQPH
                     TSIAEFLPEQTILIQGLSKSHAMTGWRIGLIMSQAPIIAQIIKSHQYLVTAASTAMQY
                     GAVEALKNGKDDALPMRAEYVKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQD
                     SFSFLQDFARKKAVAFIPGAAFGQYGEGYVRISYAASMEKIQTAMACLKEYLEENGTN
                     "
     gene            1182..1964
                     /gene="recO"
                     /locus_tag="U1396_000984"
     CDS             1182..1964
                     /gene="recO"
                     /locus_tag="U1396_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEM5342183.1"
                     /translation="MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSK
                     LVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKNINGDIFKLSYATYILALADAAL
                     QDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
                     PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKL
                     RFFIDQLYEEYVGIHLKSKKFIDDLSSWGQIMKPRTENEETE"
     gene            1961..2968
                     /gene="plsX"
                     /locus_tag="U1396_000985"
     CDS             1961..2968
                     /gene="plsX"
                     /locus_tag="U1396_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEM5342184.1"
                     /translation="MKRIAVDAMGGDHAPQAMVEGVNQALAAFPDIEIQLYGDEAKIK
                     QYLTATERVSIVHTTEKINSDDEPVKAIRRKKDASMVLATKAVKDGQVDAVLSAGNTG
                     ALLAAGVFVVGRIKNIDRPGLMSTLPTMDGKGFDMMDLGANAENTAHHLYQYGILGSF
                     YAEHVRGVKQPRVGLLNNGTEDTKGTPVHQETYKLLAEDKSINFIGNVEARELLNSVA
                     DVVVTDGFTGNAVLKTIEGTAKSIVGQLTGSIKNGGLRAKLGGLLVKPTLKKALGAMD
                     YKTAGGAVLLGLKAPVIKAHGSSDAQSIFYTIKQTRSILEAGIVEKSVAKFSVVEESH
                     D"
     gene            2961..3209
                     /locus_tag="U1396_000986"
     CDS             2961..3209
                     /locus_tag="U1396_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM5342185.1"
                     /translation="MTREQVYQRVVELIQDEKGEDFQVQPESTLADNIAADSVEIMEF
                     VLNLEDEFHVDVPDAAIEHFEVLSDIVDFIYEEAKKRS"
     gene            3327..4034
                     /locus_tag="U1396_000987"
     CDS             3327..4034
                     /locus_tag="U1396_000987"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEM5342186.1"
                     /translation="MKTDLLYSGKAKDIYATADSDQIVAVYKDQATAFNGGKKEQIVG
                     KGRLNNLISSLIFEKLNEAGVPTHFIKRLSDSEQLNKKVEIIPLEVVLRNVTAGSFSK
                     RFGVEEGITLPTPIVEFYYKKDELDDPFINDEHIAFLELASQDQIAYIKEETRRINEF
                     LKDLFAQIGLTLVDFKLEFGVDSSGQILLADEFSPDNCRLWDADGNHLDKDVFRRGLG
                     ELTEVYEVVLAKLQEVK"
     gene            4047..7766
                     /locus_tag="U1396_000988"
     CDS             4047..7766
                     /locus_tag="U1396_000988"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001042262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEM5342187.1"
                     /translation="MAKRIFVEKKADFQIKAEALRKELTHNLQLTSLTSVRLVQVYDV
                     FHLAEDLLEQAIKRIFTEQVTDKVLSDEELGLEGAVYFAIEALPGQFDQRAASSQEAL
                     LLLGSRQEVRVNTGQLYILNGNVSTEELSAIKNYLLNPVDSRFKDLDAPLVAQEFSVS
                     DATIPTLDFFASYGAEEFASYKREAGLAMEVEDLLFIQDYFKSIGRVPTETELKVLDT
                     YWSDHCRHTTFETELKSIDFSASKFHKQLQATYDKYLAMRTELGRTDKPQTLMDMATI
                     FGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGG
                     AATCIGGAIRDPLSGRSYVYQAMRISGAGDITQPLTATRPGKLPQQIISKTAAHGYSS
                     YGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKENVVREKPVAGDVVILLGGKTG
                     RDGIGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGDVTRLIKKSNDFGA
                     GGVCVAIGELADGLEIDLDKVPLKYAGLNGTEIAISESQERMSVVVRPEDVDAFIAAC
                     REENIHVVVVAKVTEKPNLVMTWNGQTIVDLERSFLDTNGVRVVVDAKVVDSSVNLPE
                     MRRTSADTLQEDLKALLSDLNHASQKGLQTIFDSSVGRSTVNHPLGGRHQLTPTESSV
                     QKLPVQHGVTTTASVMAQGYHPYLADWSPYHGAAYAVIEATARLVATGANWSKARFSY
                     QEYFQRMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEDLTVPPTLVAF
                     GVTTADSHKVLSPEFKAAGEHIYYLPGQALSEDIDFALMKSNFEAFEKWQSDYVITAA
                     SAVKYGGVLESLALMSFGNQVGARVELADLETSLTGQLGGFVFTSKEDIPDAVKIGQT
                     TADFTLLVNGVNLAGQDLQVAFEGKLEEVYPTEFEQATELQDVLAVTSSAVTKAKEAV
                     EVPVVYIPVFPGTNSEYDSAKAFEQAGAKVNLVPFVTLDAESIEQSVDTMVDNIDKAH
                     ILFFAGGFSAADEPDGSAKFIVTILRNAKVRSAIDCFIEKGGLIIGICNGFQALVKSG
                     LLPYGNFEEAGESSPTLFYNDANQHVAKMVETRIANVNSPWLAGVQVGDIHAIPVSHG
                     EGKFVVTDEEFATLRDNGQIFSQYVDFTGQPSMDSKYNPNGSSHAIEGITSRNGQIIG
                     KMGHSERYEDGLFQNIPGKKDQGLFVSAVRYFTGK"
     gene            7769..9223
                     /locus_tag="U1396_000989"
     CDS             7769..9223
                     /locus_tag="U1396_000989"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEM5342188.1"
                     /translation="MTYEVKSLNEECGVFGIWGHPQAAQVTYFGLHSLQHRGQEGAGI
                     LANDGGQLRRHRGTGLIAEVFKNPADLESLTGTAAIGHVRYATSGSASINNIQPFLFD
                     FADMQVGLAHNGNLTNAVSLKAELEKNGSIFSSSSDTEILMHLIRRSHNPDFMGKIKE
                     ALNTVKGGFAYLILLEDKLVAALDPNGFRPLSIGKMKNGAWVVASETCAFEVVGADWV
                     RDVEPGEIVVIDDSGIQYDSYTRDTQLAVCSMEYVYFARPDSVIHGVNVHTARKNMGR
                     RLAQEFQHEADIVVGVPNSSLSAAMGFAEESGLPNEMGLIKNQYTQRTFIQPTQELRE
                     QGVRMKLSAVSSVVKGKRVVMIDDSIVRGTTSRRIVQLLRDAGAKEVHVAIGSPELKY
                     PCFYGIDIQTRRELISANHTVDEVCEIIGADSLTYLSLEGMIEAIGIETDAPKGGLCV
                     AYFDGEFPTPLYDYEEEYLRSLEEKTSFYIENVK"
     gene            9279..10301
                     /locus_tag="U1396_000990"
     CDS             9279..10301
                     /locus_tag="U1396_000990"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEM5342189.1"
                     /translation="MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERLGVMGALGGFG
                     GMFDLTKLDVKEPVLVSGTDGVGTKLMLAIQYDKHDTIGQDCVAMCVNDIIAAGAEPL
                     YFLDYIATGKNEPAKLEQVVAGVAEGCVQAGCGLIGGETAEMPGMYGEDDYDLAGFAV
                     GIAEKYQIIDGSKVKEGDILLGLASSGIHSNGYSLVRRVFADVSGDALLPELNGRALK
                     DVLLEPTRIYVQQVLPLVKAGLVNGIAHITGGGFIENVPRMFADNLAAEIEEDKIPVL
                     PIFTALEKYGKIKHEEMFEIFNMGIGLVLAVSPDKVDSVCQLVDEEVYTIGRIIAKED
                     KSVVIK"
     gene            10298..10849
                     /gene="purN"
                     /locus_tag="U1396_000991"
     CDS             10298..10849
                     /gene="purN"
                     /locus_tag="U1396_000991"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000717489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEM5342190.1"
                     /translation="MKRIAVFASGNGSNFQVIAEQFKVAFVFSDRRNAYVLERAEKLG
                     VPTFAFELKEFSDKQTYEEAIIQLLDQHQIDLVVLAGYMKIVGPTLLAQYEGRIINIH
                     PAYLPEFPGAHGIEDAWNAGVAESGVTVHWVDSGVDTGQIIKQVRVPRLADDTLETFE
                     ARIHEAEYQLYPAVLEELGAVKK"
     gene            10859..12406
                     /gene="purH"
                     /locus_tag="U1396_000992"
     CDS             10859..12406
                     /gene="purH"
                     /locus_tag="U1396_000992"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006146083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEM5342191.1"
                     /translation="MTKRALISVSDKNGIVEFAQELTKFGWEIISTGGTKVALDQAGV
                     TTIAIDDVTGFPEMMDGRVKTLHPKIHGGLLARRDLDSHLQAANDHEIGLIDLVVVNL
                     YPFKETILRPDVTYDLAVENIDIGGPSMLRSAAKNHASVTVVVDPADYPTVLGEIAEQ
                     GETSYATRQRLAAKVFRHTAAYDALIADYFTKQVGEDKPEKLTITYDLNQPMRYGENP
                     QQNADFYQNALPTAYSIAAAKQLNGKELSFNNIRDADAAIRIIRDFKDRPTVVALKHM
                     NPCGIGQAETIEQAWDYAYEADPVSIFGGIVVLNREVDAATAEKMHPIFLEIIIAPGY
                     SAEALAILTNKKKNLRILELAFDAQDASEVEKEFTGVVGGLLVQDQDVVVESPVDWQV
                     VTERQPSEQEWAAMEFAWKSSKYVKSNGIIITNDKMTLGVGPGQTNRVASVRIAIEQA
                     KDRLEGAVLASDAFFPFADNVEEIAAAGIKAIIQPGGSVRDQDSIDMANKYGLTMVFT
                     GVRHFRH"
     gene            12471..13301
                     /locus_tag="U1396_000993"
     CDS             12471..13301
                     /locus_tag="U1396_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM5342192.1"
                     /translation="MTLKPFTKWTGGKRKLLTQLHEHLPFEYNRYFEPFVGGGALFFD
                     LAPENAVINDFNEELINTYLQIRDNPEALLDLLHIHQENNSKEYYLDVRSVDRDGRIE
                     TMSDVERAARILYMLRVDFNGLYRVNSKNQFNVPYGRYKNPKIVDSELILSVSRYLND
                     NNILIMQGDFVTAVEEADAGDFVYFDPPYVPITATSSFTSYTHEGFSDQDQRRLRDTF
                     IDLDRRGVNVMLSNSSSPVVEELYAGFNISRVDVSRTNGASNSSRGKIQEIIVRNYGE
                     "
     gene            13291..14106
                     /locus_tag="U1396_000994"
     CDS             13291..14106
                     /locus_tag="U1396_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000794288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM5342193.1"
                     /translation="MANNEYKYGGVLMNKPYYHKNKAILVHADTFEFLNKMKPESMDM
                     IFADPPYFLSNGGISNSGGQVVSVDKGDWDKVDSLEEKHEFNRKWIRLAKNVLKPNGT
                     IWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSCRYFTHSTETILWARKDD
                     KKARHYYNYELMKELNDGKQMKDVWVGGLTKKSEKWAGKHPTQKPEYLLERIILASTQ
                     EGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDYLKIARTRLDKEDDKKNFS"
     gene            14084..>14941
                     /locus_tag="U1396_000995"
     CDS             14084..>14941
                     /locus_tag="U1396_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II restriction endonuclease"
                     /protein_id="HEM5342194.1"
                     /translation="MTKRTFHSWFETFTDTVADWNYYVDFTKVFNNMNDLYLRTNLNI
                     LNTLVGSKQIREDFIAICDKYPDVLTVIPILLAIRLESKGRGKNRKPIALPIREYGDD
                     AIISYDFDFYSPNYAIEDYADLLENTGIFELLQSHLVKNLQDYVYGVEVGLDSNGRKN
                     RMGKIMEALVERVLQNAGLEEKTDYYKQIRTGEIESLFHIDLSSITNNGKNHKKFDFA
                     IHVNGQLYLTEVNFYSKSGSKPNETTRSYENLAEKLTEISNVHFVWITDGEGWQRSKS
                     NLEEAFERIP"
BASE COUNT         4168 a         2897 c         3765 g         4111 t
ORIGIN      
        1 tttttgaggt ggcagaatgg atttattgaa tcgttttaat aagaatttga atcggattga
       61 ggtttcgatg attcgtcagt ttgatcagtc tatttcggat gttcccggga ttttgaaact
      121 gaccttggga gagcctgatt ttacaacgcc tgatcatgta aaagaagcag ctaaggctgc
      181 tatcgatgct aaccagagtt attatacagg tatggctggt cttttggagt tgcgccaagc
      241 tgcagctgag tttgtggctg aaaaatataa tttacactac aatccagaaa atgaaatcct
      301 ctctacaatc ggtgcgacag aagctctgtc agcgagttta gttgctattt tggaggctgg
      361 ggatacagtt cttctgcctg cccctgccta tcctggttat gagccgattg tcaatatggt
      421 gggagcagac atcgttgaaa tcgatacgac ggcaaatgat tttgtattga cacctgagat
      481 gttggaagag gcgattattg agcagggtga taagctaaaa gctgtcattc tcaactatcc
      541 tgccaatcca acaggtgtga cctactcacg tgagcagatt caggcttttg cggatgtctt
      601 gcgtaactat cctgtctttg tcctatcaga tgaggtctat gcggagttga cttacactgg
      661 tcagcctcat acttcgattg cggagttttt gccagaacag accattttga ttcagggatt
      721 gtccaagtcc catgctatga caggttggcg gattggcttg attatgagtc aggctcccat
      781 catcgctcaa attatcaaga gccatcagta tcttgtgact gcagcgtcaa ctgctatgca
      841 gtatggtgcg gttgaggcct tgaaaaatgg taaggatgac gctcttccga tgcgggcgga
      901 gtacgtcaag cgtagggatt acatcatcga gaagatgacg gacttgggct ttaaaattat
      961 caagcctgat ggagcatttt acatctttgc aaaaattcct gcgggttaca atcaagattc
     1021 ctttagcttc ttgcaagact ttgcgagaaa gaaagcggtg gcctttattc caggcgcagc
     1081 cttcggtcag tatggagaag gctatgtgcg aatttcctac gcagcaagta tggagaagat
     1141 tcaaacagcc atggcttgtt tgaaggaata tctagaagaa aatggaacga attgaaacca
     1201 ggggattagt cctatataat cggaattttc gagaagatga caagctggtc aagattttta
     1261 cagagaaggc tggcaagcga atgtttttcg tgaaacatgc ctctaaatcc aagctggtag
     1321 cttctatcca gcctttgacc tatgcggatt ttatcgttaa aatcaatgat gatgggctgt
     1381 cttatatcga agattttcat caggtacagc cctttaagaa tattaacggt gatattttca
     1441 agcttagcta tgctacctat atcttggcct tggccgatgc ggccttgcag gacaaggtct
     1501 atgacccagc tctctttgct tttttggtca agaccttgga cttgatggag tcaggtttgg
     1561 actacgaagt tctgaccaat atctttgaaa ttcagctctt gggtcgattt gggatcagtc
     1621 tgaattttca cgagtgtgct ttttgtcatc gggttggctt gccttttgac tattcctaca
     1681 agtacagcgg tgtcttgtgt ccgcaacact atcaacaaga tgagcgacgg gcttatctgg
     1741 atccaaatgt tccctatcta cttgatcaat ttcaggctat ttcctttgat gagctggaaa
     1801 ccatttccat caagcctgag atgaagcgaa aattacggtt ttttattgac cagctgtacg
     1861 aggaatatgt ggggattcac ttgaaatcca agaaatttat agatgatttg tcttcttggg
     1921 ggcagattat gaaaccaaga acagaaaatg aggaaacaga atgaaacgta ttgcagtaga
     1981 tgctatgggt ggagaccacg cccctcaggc aatggtagaa ggtgtcaatc aagccttggc
     2041 tgcctttcca gacattgaaa ttcaacttta tggtgatgag gctaaaatca agcagtattt
     2101 gacagcgaca gagcgtgtca gcatcgtcca tacgacggag aaaatcaatt cagatgatga
     2161 gcctgtcaag gcgattcgtc gtaagaaaga tgcttcgatg gtcctagcga ccaaggctgt
     2221 caaggatggt caggtagatg cggtcttgtc agctggaaat acaggtgctc ttttggcggc
     2281 aggcgtcttt gtcgtcggtc gcatcaagaa catcgaccgt cctggtctta tgtctacctt
     2341 gccgactatg gacggtaagg gatttgatat gatggatttg ggggcaaatg ctgaaaatac
     2401 agctcatcac ctctatcagt atggtattct tggctcattt tacgcggagc acgtgcgtgg
     2461 tgtcaaacaa cctcgtgtgg gacttttgaa caacggtacg gaagatacca agggcacgcc
     2521 agttcaccaa gaaacctata aactcttggc ggaagacaag tcaatcaact ttatcggtaa
     2581 tgtggaggcg cgtgagttgc tcaacagtgt ggcagatgtg gtcgtgacgg atggtttcac
     2641 gggaaacgct gtgctgaaaa ccattgaggg aactgcaaaa tccatcgttg gtcagttgac
     2701 tggctcaatc aagaatggcg gtctgcgtgc taaattggga ggcttgttgg tcaaaccaac
     2761 cttgaaaaag gccttggggg ctatggacta taaaactgca ggtggtgctg tcttgcttgg
     2821 tctgaaagca cctgtcatca aggcgcacgg atccagcgat gcccagtcga ttttctatac
     2881 gattaagcag acgcgttcga ttttggaggc tggcattgtt gaaaaatcag tggccaaatt
     2941 ttcagtagtg gaggagagtc atgactagag agcaggtcta tcagcgggtt gttgaattaa
     3001 ttcaggatga aaagggagaa gattttcaag ttcaacctga atctactttg gcagataata
     3061 ttgcagcaga ttcagtagaa atcatggaat ttgttcttaa tttggaggat gaatttcatg
     3121 tagatgttcc agatgctgct attgagcatt ttgaggtcct atctgatatt gttgatttta
     3181 tttatgaaga agcaaagaaa cgttcgtagt ttacgggcgt ttttctttgt tttttcctaa
     3241 aaaaccgtaa atttgttgtg aatgcgaata ttgtgtgtta gaataaacga aaagactaga
     3301 atattttacg aaaggcgaac attctcatga aaacagacct tctctattca ggaaaagcca
     3361 aagacatcta cgctacggct gatagcgacc agattgttgc ggtttataag gatcaggcaa
     3421 cggcttttaa tggtggtaag aaagaacaga ttgtgggcaa gggccggctc aataatctga
     3481 tttcatcttt gatttttgaa aaattgaatg aagctggtgt cccaacgcat tttatcaagc
     3541 gtttgtcgga ttcggagcag ttgaataaga aggtggagat tattcctctt gaggttgttt
     3601 tgcgaaatgt gacagctggg tctttctcaa aacgcttcgg tgtggaagaa gggataacct
     3661 tacctactcc tatcgtggaa ttttactata aaaaagatga gttggacgat ccttttatca
     3721 acgatgaaca cattgccttt ctagaactgg ctagtcagga ccaaatcgcc tatatcaagg
     3781 aagaaacaag acgaatcaat gaattcttga aggacttgtt tgctcagatt gggctgactt
     3841 tggtggactt caagctagaa tttggggttg actcgtctgg tcagatttta ttggcggatg
     3901 agttttcgcc tgataattgt cgtttgtggg atgcggatgg caaccatctg gacaaggatg
     3961 ttttccgtcg ggggctcggg gagttgaccg aggtttacga ggtcgtattg gcaaagttac
     4021 aagaagtgaa ataaggattg gaaaatatgg caaagcggat ttttgttgag aagaaggcgg
     4081 attttcagat taaggcggag gctcttcgca aggagttgac ccataatttg cagctgacaa
     4141 gtttgacgag tgtacgtctg gtgcaggttt atgatgtctt tcatttggcg gaggacttgc
     4201 tggagcaagc tattaagcgt atctttaccg agcaggtgac ggacaaggtt ttgtcggatg
     4261 aagaattagg tctggaaggt gcggtttatt ttgctattga ggctttacct ggtcagtttg
     4321 accagcgggc tgcaagcagt caagaggccc ttctcttatt gggcagtcgt caggaggtgc
     4381 gtgtcaatac aggtcagctc tatatcttga acggaaatgt cagcacagaa gaattatctg
     4441 ccatcaagaa ttatttgctc aatcctgtgg attcgcgttt caaggatttg gatgctcctt
     4501 tggtggctca agagttttcg gtttcggatg cgaccattcc gaccttggac ttttttgcaa
     4561 gctatggggc agaggaattt gcgtcttaca agcgtgaggc tggtttggct atggaagtgg
     4621 aagacctgct ctttattcag gattatttca agtcaattgg tcgagtgcca actgagacag
     4681 aactcaaggt cttagatact tactggagtg accactgccg tcatacgact tttgaaacgg
     4741 aactcaagtc tattgacttt tcagcttcaa aattccacaa gcaattgcag gcgacttatg
     4801 acaagtattt ggctatgcgg acagaattag gtcggacaga taaaccgcag actttgatgg
     4861 atatggcgac gatttttggc cgttatgagc gggccaatgg tcgtctggat gatatggaag
     4921 tgtcggacga aatcaatgcc tgctcggtgg aaattgaagt ggatgtggat ggcgtgaaag
     4981 agccatggct ccttatgttc aagaatgaaa cccataacca ccctacagaa atcgagcctt
     5041 ttggtggtgc cgcaacctgt atcggtggag ccattcgtga tcctttgtca ggacgttcct
     5101 atgtctatca ggccatgcga atttcaggtg cgggcgatat cacccagcct ttgacggcga
     5161 ctcgcccagg gaaattgcca caacaaatca tttctaaaac agcggcacat ggttattctt
     5221 catacggaaa ccaaatcggt ttggcaacca cttatgtgcg tgaatatttc cacccaggct
     5281 ttgtcgctaa acgcatggaa cttggtgccg tagtcggtgc agctccaaag gaaaatgtgg
     5341 ttcgtgaaaa accagttgca ggcgatgtgg tcattttgtt gggtggcaaa acaggccgtg
     5401 acggtatcgg tggggcaaca ggctcatcta aggtgcagac agttgagtct gtcgaaacgg
     5461 ctggtgcgga agtccaaaaa ggaaatgcta ttgaagaacg taaaatccaa cgcttgttcc
     5521 gcaatggtga cgtgactcgc ttgattaaaa aatccaatga cttcggtgct ggtggtgtct
     5581 gcgttgccat tggagaactg gcagacggtc ttgaaattga tttggataag gttccgctca
     5641 agtatgcggg cttgaatggt acggagattg ccatttccga atcacaggag cggatgagtg
     5701 tggtggttcg tccagaagac gtagatgcct ttatcgcagc ctgccgtgag gaaaatatcc
     5761 atgtagttgt cgtagctaaa gtgactgaaa aaccaaacct agttatgact tggaatggac
     5821 aaactattgt tgatttggaa cgttccttcc ttgataccaa cggtgtgcgt gtagtcgttg
     5881 atgccaaggt ggttgacagc tctgtcaact tgccagaaat gcgtagaaca tcagctgata
     5941 ccctgcaaga agacttgaaa gcactgttgt cagacctcaa ccatgctagt caaaaaggat
     6001 tacagacgat tttcgactca tctgttggtc gttcaaccgt caaccaccca ctcggaggtc
     6061 gtcaccaatt gacaccgaca gaaagttcgg tgcaaaagtt gcctgtccaa cacggtgtga
     6121 cgacaacggc atccgtcatg gctcaggggt atcatcccta tctggcagac tggtcacctt
     6181 accacggtgc tgcctatgcg gtcatcgaag cgacggctcg cttggtggca acaggtgcta
     6241 actggtccaa ggctcgcttc tcctatcagg agtatttcca gcgaatggac aaacaggcag
     6301 agcgttttgg tcagccagta gcagctcttc tgggctctat cgaggctcag atccagcttg
     6361 gtttgccgtc tatcgggggc aaggattcca tgtctggtac ctttgaggac ttgacagttc
     6421 cgcctacctt ggtggccttt ggtgtgacaa cagcagacag ccacaaggtt ctctcacctg
     6481 agttcaaggc ggctggcgag cacatctatt acctaccagg ccaagccttg tcagaagata
     6541 ttgattttgc tttgatgaag tctaattttg aagcttttga aaaatggcag agcgattatg
     6601 tgattacggc tgctagtgca gtcaagtatg gaggagttct agaaagtcta gcccttatgt
     6661 cctttggtaa ccaagtcgga gcaagagttg agcttgcaga ccttgaaact agcctgacag
     6721 gccagctcgg aggatttgtc ttcacatcca aagaagacat tccagatgct gtgaaaatcg
     6781 gtcaaaccac cgctgacttt acactccttg tcaacggtgt caaccttgct ggacaggact
     6841 tgcaggtagc ctttgagggt aaactagaag aagtttaccc gacagaattt gaacaggcga
     6901 cggagttgca ggatgttctg gcagtcacaa gttcagcggt tacaaaagca aaagaagccg
     6961 ttgaagtacc tgtggtttac attccagtct tcccaggtac caactcagaa tatgattctg
     7021 ccaaggcctt tgaacaggct ggtgcaaaag tcaatctggt gccatttgtg actttggatg
     7081 cggaaagtat tgaacagtct gttgacacca tggttgacaa tattgacaag gcacatattc
     7141 ttttctttgc aggtggattc tccgctgcgg atgaaccaga tgggtctgct aagtttatcg
     7201 tgactatctt acgaaacgcc aaggtccgct ctgctattga ctgtttcatc gaaaaaggtg
     7261 gcctcatcat cggtatatgc aatggtttcc aggcccttgt caaatcgggc ttgttgccgt
     7321 atggaaactt tgaggaggca ggtgaaagca gtccgaccct cttctacaac gatgccaatc
     7381 agcacgttgc caaaatggta gagacgcgga ttgccaatgt caactctccg tggttggcag
     7441 gtgttcaagt cggcgatatt cacgctatcc cagtttccca cggtgaagga aaatttgtag
     7501 tgacggacga ggaatttgct actttgcgtg ataatgggca aatcttcagc caatacgttg
     7561 actttaccgg tcagccaagc atggattcta agtacaatcc aaatggatcc agccatgcca
     7621 ttgaaggtat tactagccgc aacggtcaga ttatcgggaa aatggggcat tcggagcgat
     7681 acgaggacgg tcttttccaa aacattccag gcaagaaaga ccaagggctc tttgtttcag
     7741 cggttcgcta ttttacagga aaataaatat gacatacgaa gttaaatcac tcaatgaaga
     7801 atgcggtgtt ttcggcattt ggggacatcc gcaggctgct caggtgacct attttggtct
     7861 ccatagtttg cagcaccgtg gacaagaagg agcagggatt ttagcaaatg atggcggaca
     7921 attgcgtcgc catcgcggaa caggcctgat tgcagaagtc ttcaaaaatc cagcagattt
     7981 agaatccttg acaggaacgg ctgctattgg tcatgtccgt tatgcaactt ctggctctgc
     8041 ttctatcaat aatatccagc ccttcttatt tgattttgca gacatgcagg tgggtttggc
     8101 acacaatggg aatttgacca acgcggtcag tttgaaggct gaacttgaaa aaaatggttc
     8161 cattttctct tcttcttctg acactgagat tctcatgcac ttgattcgcc gcagtcacaa
     8221 tccagacttt atgggaaaaa tcaaggaagc cctcaatact gttaaagggg gctttgccta
     8281 cctgatcttg ttggaagaca aattggttgc tgccttggac cctaacggtt tccgtccact
     8341 ttcaataggc aaaatgaaaa atggtgcctg ggtagttgcc agcgaaactt gtgcttttga
     8401 agtagtgggg gctgactggg tgcgagatgt ggagcctggt gaaattgtcg tcattgatga
     8461 ttcaggaatt caatatgata gctatacaag agatacgcaa ctggctgttt gctctatgga
     8521 gtatgtctat tttgctcgcc cagattcggt aattcacggg gtcaatgtcc acacggctcg
     8581 taaaaatatg ggtcgtcgtt tggcccagga atttcaacat gaagcagata tcgtggttgg
     8641 tgtgccaaac tcctccctat ctgcggctat gggatttgca gaggaatctg gtttgccaaa
     8701 tgaaatgggg ctgattaaaa accaatacac ccagcggacc tttattcaac caacccagga
     8761 attgcgggag cagggtgtgc gcatgaagtt gtcagccgtt tcaagtgttg tcaaaggcaa
     8821 gcgtgtggtc atgattgacg actctattgt tcgcggtaca actagccgcc gcattgtcca
     8881 gcttcttcgt gatgcagggg caaaagaagt ccatgtggct atcggcagcc cagaactcaa
     8941 gtacccgtgt ttctatggta ttgatattca gacccgtagg gagctgattt cagccaacca
     9001 taccgttgat gaagtctgtg agattatcgg ggcagacagt ctgacctacc tttctcttga
     9061 ggggatgatt gaagccatcg gcatcgaaac cgatgcgcca aaaggcgggc tctgtgtagc
     9121 ctactttgac ggagaatttc caacgcctct ctatgactat gaggaagaat accttcgtag
     9181 cctagaagag aaaacgagtt tctacattga aaatgtcaag taaagacaga ggtgtcaacg
     9241 ttacttgaca gacctgtaaa ctgttgaaag gaatcaaaat gacaaataaa aatgcctacg
     9301 cccaatcggg cgttgacgtc gaagcgggat atgaagttgt cgaacgcatc aagaagcatg
     9361 tagctcggac agaacgcttg ggtgtgatgg gagccctcgg tggttttggc gggatgtttg
     9421 atctaaccaa actggatgtc aaagagccag tcttggtatc tgggacagac ggtgtgggca
     9481 ccaagctcat gctggctatc cagtacgaca agcatgacac cattggtcaa gattgcgtgg
     9541 ctatgtgtgt caacgacatt atcgcagcag gtgcagagcc gctttacttc cttgactaca
     9601 ttgcgactgg aaaaaatgag ccagccaagc tggagcaagt agtagccggt gttgcagaag
     9661 gctgtgtcca agctggttgc ggattgattg gcggtgaaac ggctgaaatg cctggtatgt
     9721 acggcgagga tgactatgac ctggctggct ttgctgtcgg tattgcggag aagtatcaga
     9781 ttatcgacgg tagcaaggtc aaggagggtg acattctcct cggcctagct tccagcggta
     9841 tccactccaa cggatattcc ctagtccgtc gtgtttttgc agatgtttct ggggacgctc
     9901 tgttgccaga gctcaatggc agagctctta aggatgtcct attagagccg acacgtatct
     9961 atgtccagca ggtgttgcct ctggtaaaag caggtctggt caacggcatt gcccatatca
    10021 caggcggtgg atttatcgaa aatgtgcctc gtatgtttgc ggacaacctt gcagctgaaa
    10081 ttgaagaaga taagattcca gtcctcccaa tctttacggc ccttgaaaaa tacggaaaga
    10141 tcaagcatga agaaatgttt gaaatcttca atatgggtat cggattggtc ctggcagtca
    10201 gtccagacaa ggttgacagt gtctgtcaac tagttgacga ggaagtttac accattggtc
    10261 gcatcatcgc caaggaagat aagagtgtgg tcatcaaatg aaacgaatag cagtgtttgc
    10321 atcaggcaac ggctccaatt tccaagtcat cgcagaacag tttaaagtag cttttgtctt
    10381 ttcagaccgc agaaatgcct atgtcttgga acgagctgaa aaactaggtg taccaacctt
    10441 tgcttttgaa ctaaaagagt tttcagataa gcagacctac gaagaagcca ttatccaact
    10501 attagaccag caccagattg acttggtggt cttggcaggc tatatgaaaa ttgtgggtcc
    10561 gaccttgtta gctcaatatg aaggtcgtat catcaatatc cacccggctt atttgcctga
    10621 atttccagga gctcacggga ttgaagacgc ttggaatgca ggtgtggcag aaagtggtgt
    10681 gacagttcac tgggttgaca gcggtgttga cacaggacaa atcatcaaac aagtccgagt
    10741 gccccgactg gccgatgata ccctggaaac ctttgaagcc agaatacatg aagcggagta
    10801 ccaactctat ccagcggttt tggaggagtt gggggcagtg aaaaaataag gagaaatcat
    10861 gacaaaacgt gcgttaatta gcgtatcaga taaaaatggt attgtagaat ttgcccaaga
    10921 attgaccaag tttggttggg aaattatctc gaccggtggt accaaggttg ccttggatca
    10981 ggctggtgta actaccatcg ccattgacga tgtgactggt tttcctgaga tgatggacgg
    11041 ccgtgttaag acgcttcatc cgaaaataca cggtggtttg ttagcacgtc gggatttgga
    11101 cagccacctg caagcagcta acgaccatga aataggcttg attgacttgg tagtggttaa
    11161 cctttacccc ttcaaagaga ctattttacg tccagatgtg acctatgatt tggcggtgga
    11221 gaacatcgac atcggcggac cgtccatgct tcgttctgca gccaaaaacc acgccagcgt
    11281 gaccgttgtg gtggatccgg cagattatcc gacggtttta ggggaaattg cagagcaggg
    11341 ggaaacgagc tatgcaacac gtcagcgatt ggctgcaaag gtattccgtc ataccgcagc
    11401 ttatgatgcc ctaatagcag attattttac caagcaagta ggcgaagata agcctgaaaa
    11461 attaaccatt acttatgacc tcaatcagcc tatgcgttac ggtgaaaatc cccagcaaaa
    11521 tgcggatttc taccaaaacg cccttccgac agcctattct attgcagctg ctaagcagtt
    11581 aaatggtaag gagttgtctt tcaacaacat tcgtgatgcg gatgcggcca ttcggattat
    11641 ccgtgatttt aaggaccgtc caactgttgt ggctctcaaa cacatgaacc cttgtggtat
    11701 cgggcaggca gaaaccattg aacaggcttg ggattatgct tatgaggctg acccagtatc
    11761 gattttcgga ggcatcgtcg tgctgaacag ggaagtggat gctgcgacgg ctgaaaagat
    11821 gcacccgatt ttcttagaaa tcatcatcgc accgggctac tcggcagaag cgctagctat
    11881 tttgaccaat aaaaagaaaa atcttcggat tttggagttg gcctttgacg cacaggatgc
    11941 aagcgaagtg gaaaaagagt tcacaggcgt tgtcggcgga ctcttggtgc aggatcagga
    12001 cgtggtggtg gaaagcccag tggactggca ggtggtgacc gagcgtcaac cgtccgagca
    12061 agagtgggca gccatggagt tcgcttggaa gtcctctaaa tatgtcaagt ccaacggcat
    12121 catcatcacc aatgacaaga tgactttggg cgtggggccg gggcaaacca accgtgtagc
    12181 gtccgtccgt atcgctatcg agcaagccaa ggaccgtttg gagggagccg ttttggcgtc
    12241 ggacgccttc ttcccatttg ctgataacgt ggaagaaatt gcagctgcag gtatcaaggc
    12301 tatcatccag ccaggtggtt ctgtccgtga ccaagactcc attgacatgg ccaacaagta
    12361 cggcttgacc atggtcttta caggagtcag acattttaga cattgagaat tttggataag
    12421 tatagcaccc cagctggaga agttggggtg gattttggta taatagttcc atgactttaa
    12481 aaccttttac gaaatggaca ggtgggaagc ggaagctatt aactcagcta catgaacatc
    12541 taccatttga atacaataga tattttgaac cgtttgttgg aggaggggca ttattctttg
    12601 atttagctcc cgaaaatgcc gttataaatg attttaatga ggaattgata aatacttatt
    12661 tacagatacg ggataatcca gaagcattgc ttgatttatt acatatccat caagagaaca
    12721 attccaagga atattatttg gatgttcgtt cggttgacag agatggtaga atagaaacta
    12781 tgtccgatgt ggagcgagca gcacgcatac tatatatgct acgagtagat tttaatggtc
    12841 tatatagggt gaactctaaa aatcagttta atgtccctta cggcaggtat aaaaatccaa
    12901 agatagtaga ctcggaactt attctaagtg tatcaagata cttaaatgat aacaatattt
    12961 taattatgca aggtgatttt gttacggcag ttgaagaagc tgatgcggga gattttgtat
    13021 actttgatcc tccgtatgtt cctataacgg ctactagctc ttttacttct tatacgcatg
    13081 aaggtttttc tgatcaggat cagcgtcgat taagagatac tttcatagat ttagaccgaa
    13141 gaggagttaa tgtaatgctt tctaattctt caagcccagt agttgaagaa ttgtacgctg
    13201 gttttaatat ttcccgagta gatgtatcga gaacgaatgg agcaagtaat tccagtcgtg
    13261 gaaaaattca agaaattatt gtaagaaatt atggcgaata acgaatataa gtatggaggg
    13321 gtcttaatga acaaaccata ctatcataaa aacaaggcta ttttggtaca cgcagataca
    13381 tttgaatttt tgaataaaat gaaaccagag agcatggata tgatttttgc agatcctcca
    13441 tattttttaa gtaatggagg aatttctaac tctggaggtc aagttgtttc tgtagataag
    13501 ggggattggg ataaagttga ttctttagaa gaaaaacatg aatttaatag gaaatggatt
    13561 cgcttagcca aaaatgtgtt gaaaccaaat gggaccattt ggatttcagg gagctttcac
    13621 aatatttatt cagtgggtat ggccttagaa caagaaggtt ttaaaatact aaataatatt
    13681 acttggcaga agacaaatcc tgcaccaaat ctttcctgtc gttactttac tcattcaacg
    13741 gaaactattt tatgggctcg aaaagatgat aaaaaagctc gtcattatta taattacgaa
    13801 cttatgaaag aactcaatga tggcaaacaa atgaaagatg tttgggttgg aggactaaca
    13861 aaaaaatctg aaaaatgggc aggtaagcat ccgactcaga aaccagaata tctcttagaa
    13921 cgtattattt tagcttcaac tcaagaagga gattacatac ttgatccatt tgtaggaagc
    13981 gggacgacag gagtggttgc caaacgtttg ggaagaaaat ttattgggat tgatgctgaa
    14041 cgggattatt taaaaatcgc gagaactaga ttggataagg aagatgacaa aaagaacttt
    14101 tcatagttgg tttgaaactt ttacagatac ggttgctgat tggaactact atgttgactt
    14161 tacaaaagtt tttaataata tgaatgacct gtatttgaga actaatttga atatcttgaa
    14221 tacgttggta gggagtaaac aaattcgaga agattttatc gcaatatgtg acaaatatcc
    14281 agatgtgtta actgtcatac caattctttt ggctatacgt ttggaatcta aaggccgagg
    14341 aaaaaatcgt aaaccaattg ctttacctat tcgcgagtat ggggacgatg ctataataag
    14401 ctacgatttt gatttttatt ctcctaacta tgctatagag gattatgccg atttactaga
    14461 gaatacaggt atttttgaac tactgcaatc acatctagtt aaaaacttac aggactatgt
    14521 ttacggtgta gaagtcgggt tagattcaaa tggtcgtaaa aatagaatgg gtaagataat
    14581 ggaagctttg gttgaaagag tacttcagaa tgcaggacta gaagaaaaaa cggactacta
    14641 taaacaaata cgaactgggg aaattgaatc actatttcat attgatctaa gttctataac
    14701 gaataatggt aaaaatcata agaaattcga ttttgcaatt cacgtaaatg gtcaattgta
    14761 tttaacggaa gtaaatttct attctaaatc agggtcaaaa ccaaatgaaa ccacacgttc
    14821 atatgaaaat ttagcagaaa aacttactga aatttcgaat gttcattttg tttggataac
    14881 agatggtgaa ggttggcaaa ggtctaaatc taatttagag gaggcatttg aaagaatacc
    14941 a
//
LOCUS       DASGBY010000044        14695 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.044, whole genome shotgun sequence.
ACCESSION   DASGBY010000044 DASGBY010000000
VERSION     DASGBY010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14695
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.044"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..270
                     /locus_tag="U1396_000996"
     CDS             <1..270
                     /locus_tag="U1396_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5342195.1"
                     /translation="SGNFLAKEHITKRGNPYARKILFKCIHNIASASNTNPCHIADFY
                     EKRKRQSQTTSTKPHTIASIHRLIRTMYYLIMHNKLYDYASTQNR"
     gene            complement(493..3282)
                     /locus_tag="U1396_000997"
     CDS             complement(493..3282)
                     /locus_tag="U1396_000997"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM5342196.1"
                     /translation="MKLKETLNLGKTAFPMRAGLPTREPEWQKAWDEANLYARRQELN
                     EGKPAFHLHDGPPYANGNIHVGHALNKISKDIIVRSKSMSGFRAPFVPGWDTHGLPIE
                     QVLAKQGVKRKEMDLVEYLEMCRDYALSQVDKQRDDFKRLGVSADWENPYITLTKDYE
                     AAQIRVFGAMADKGYIYRGAKPVYWSWSSESALAEAEIEYHDIDSTSLYYANKVKDGK
                     GLLDTDSYIVVWTTTPFTVTASRGLTMGADIDYVLVQPAGSDRKYVLAEALVDSLAAK
                     FGWESFEVISKHKGAEFEYIVTEHPWDTEVDELVILGDHVTTDSGTGIVHTAPGFGED
                     DYNVGVKYDLEVAVTVNERGLMNEAAGPDFEGQFYDKVVPTVKEKLGDLLLASEVINH
                     SYPFDWRTKKPIIWRAVPQWFASVSKFRQEILDQIEATTFIPAWGKTRLYNMIRDRGD
                     WVISRQRAWGVPLPIFYAEDGTAIMTKEVTDHVAALFEEHGSIIWWKSEAKDLLPAGF
                     THPGSPNGEFTKETDIMDVWFDSGSSWNGVMNARENLAYPADLYLEGSDQYRGWFNSS
                     LITSVAVNGHAPYKAVLSQGFVLDGKGMKMSKSLGNTILPSDVEKQFGAEILRLWVTS
                     VDTSNDVRVSMDILGQVSETYRKIRNTLRFLIANTSDFNPASDAVAYEELRSVDQYLL
                     VKFNKLVAQIREAYDNYDFMGIYKSVVNFVTLDLSAFYLDFAKDVVYIDGAKSLSRRQ
                     MQTVFYDILVKITKLLTPILPHTAEEIWSYLEHEAEEFVQLAEMPEVETFANEAQLLA
                     DWENFMVFRTQAQKALEEARNAKVIGKSLEAHLTAYVSAETKSFLESLNADLAQLLIV
                     SNLTVTTEAAPESAVLVEEVAFTVERASGEVCDRCRRIDTSVAERSYGATICDHCASV
                     VEENFAEAVAQGFEA"
     gene            complement(3293..3736)
                     /locus_tag="U1396_000998"
     CDS             complement(3293..3736)
                     /locus_tag="U1396_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342197.1"
                     /translation="MIRLELVNKDNFEAVLQVQLAPEDQRRVASVEYSLAQAWLYKDS
                     GMILPYAVVSGRKVVGFAMLSIETKDNSYYLWRLLIDKDFQNRGCGKEVVQQMIGKAK
                     ADPLCHKISINYVIGNHKMRYILEKFGFQPVGLDGQKMKMELIIK"
     gene            complement(3967..4656)
                     /locus_tag="U1396_000999"
     CDS             complement(3967..4656)
                     /locus_tag="U1396_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEM5342198.1"
                     /translation="MALTALELKDKTFATKFRGYDADEVDDFLDIVTRDYEDLIRKNH
                     DQELELKNLRERLAYFDEMKESLSKSVLLAQDTAEKVKVAAEDQAANIIKQADYDAAT
                     LLHEAKDKANEILRNATDNAKKVVIETEELKNQTRIFHQRLKSTVESQLSLVNSSEWE
                     EILRPTASYIQTSDEAFRDVLHKALDEELPVEEESLDYTRQLTPEEIAELTRHAAAFE
                     SGESVVLSIEE"
     gene            complement(4665..5456)
                     /locus_tag="U1396_001000"
     CDS             complement(4665..5456)
                     /locus_tag="U1396_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM5342199.1"
                     /translation="MKNDKNLLQHFSREEREFVEKIMDMCQQVEDTYSYRLTHFLHPR
                     QDEIVCKIANYYQLQTFSSRDLVSTEHSRVIIAPTYYELDIKHFELTALHLSYARKFH
                     TLSHSQVLGTFLNQLGIKREYLGDILIDDERLIVFIDQKFGQIALQSITKVARVPVKG
                     KEEEWTTVRLPIGQEWRSKDVLVSSMRLDKLISVAFNLSRATANKLIEAGHVKLDYVL
                     TEQTSKLVEIGQLISVRRYGRVRLNEFLGFSKQGKIKLKLDIVKT"
     gene            complement(5459..5722)
                     /locus_tag="U1396_001001"
     CDS             complement(5459..5722)
                     /locus_tag="U1396_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEM5342200.1"
                     /translation="MQILIFLLLKIVEIYSYLLLAYALLSWFPSLYTSSIGRLIQWLV
                     APILKPFKRFNLQFMGLDWTVMAAMIALNMGTRFLVQLLLLLA"
     gene            complement(5727..6296)
                     /gene="sepF"
                     /locus_tag="U1396_001002"
     CDS             complement(5727..6296)
                     /gene="sepF"
                     /locus_tag="U1396_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEM5342201.1"
                     /translation="MALKDTFKNLFNYFEVDEVNEVEEQADAYSMPNDRPKMRVANTT
                     VAPVREQQPKVETRREARSESQLQRLHERQQELMTNNNEKEIVKTTIDIKFPKRYEDA
                     PEMVNLLLDNASILIDFQYMSEQQARRCLDYLDGARSVLSGNLKKVSNTMWLLTPVNV
                     TVNIEELRNANAGTTTGAADSNFDFDIKR"
     gene            complement(6313..6984)
                     /locus_tag="U1396_001003"
     CDS             complement(6313..6984)
                     /locus_tag="U1396_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEM5342202.1"
                     /translation="MNFQKNKDAIFSAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQ
                     LVNTGITHIGENRVDQFLEKYNALADKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSV
                     KLAQEIDKRATKIVKCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMA
                     PIDATDDELDEIFSKIQEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIG
                     SAFFE"
     gene            complement(6991..8220)
                     /gene="ftsZ"
                     /locus_tag="U1396_001004"
     CDS             complement(6991..8220)
                     /gene="ftsZ"
                     /locus_tag="U1396_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM5342203.1"
                     /translation="MAFSFEAAASHGAVIKVIGVGGGGGNAINRMIEEGVAGVEFIAA
                     NTDVQALSSSKAETVIQLGPKLTRGLGAGGQPEVGRKAAEESEEALTNVLTGADMVFI
                     TAGMGGGSGTGAAPVIARIAKNLGALTVAVVTRPFGFEGNKRGNFAIEGIEGLREQVD
                     TLLIISNNNLLEIVDKKTPLLEALSEADNVLRQGVQGITDLITNPGLINLDFADVKTV
                     MENKGNALMGIGIGTGEDRVIEAARKAIYSPLLETTIDGAEDVIVNVTGGYDMTLTEA
                     EDASEIVNQAAGQGVNIWLGTSIDETMKDEIRVTVVATGVRQDTADKPARHRMEAVSP
                     RPSQRFDHSVASAPTRGAAQQTEAPKASAFGEWDLRRENLIRPTDTEPTSTVSVEKFT
                     MDHDEDELDTPPFFRNR"
     gene            complement(8246..9625)
                     /gene="ftsA"
                     /locus_tag="U1396_001005"
     CDS             complement(8246..9625)
                     /gene="ftsA"
                     /locus_tag="U1396_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEM5342204.1"
                     /translation="MARNGFFTGLDIGTSSVKVLVAEYIDNEMNVIGVSNVKSAGVKD
                     GIIVNIEVAAGAIKKAIEQAEEKSGIRIEKVNVGLPANLLQIEPTQGMIPVTTDSQEI
                     TDLDVENVVKSALTKSMTPEREVISFIPEEFTVDGFQGIKDPRGMMGIRLEMRGMLYT
                     GPRTILHNLRKTVERAGVQVENIVISPLALTRSVLNEGEREFGATIIDLGGGQTTVAV
                     MRGQELQYTNIYQEGGDYITNDISKVLTTSKSIAENLKYNYGIAYPQDASDKEKFTVE
                     VIGENAPVEVTERYLSEVIAARLRQIFDRVKQDLERTRALDLPGGIVIVGGGAILPGI
                     TELAQEVFGVNTKLFVPNQIGIRNPAFASVISFVEYVGELEDVENIAQHAVNGETTLR
                     HKPVEIPVARPRISQPIQREIVNELNTVDQVEEQVAPIYHDEEEEVRPAAKGNITDRI
                     RGLFGSMFE"
     gene            complement(9778..10872)
                     /locus_tag="U1396_001006"
     CDS             complement(9778..10872)
                     /locus_tag="U1396_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEM5342205.1"
                     /translation="MTEKDSNVEESVLEVEQASQVELDSEQISPAEKESVLAEEKGLS
                     TDVSTDVDIPEMTAPDDEKSAFFEQWKARHQAYLAHKDAAEIQAVDEGQTEQENPEAK
                     KSKRVLFQGIERKTESLKSKKETGEKVQTLKVDIPSKVVWKAIPVLVTSLLLAALALY
                     FISPTSKKKQIEVVGNERLTAEQVENYSLISPDDYNVTVALHADAYAKNIKKNSSSVE
                     TATIKFQFPATFTIHIKEYAIIGYIQQQSQWYPVLSSGEIGGEPISQDSMPEGYTTIN
                     LSDKELIKELAIELGKIDAGIRSAIQTINLTPSKVTVDLLTFNMRDGNTVLVPLSEIS
                     QKVSYYTKIAAEVTVPTTIDMEVGIYRYAS"
     gene            complement(10878..11942)
                     /locus_tag="U1396_001007"
     CDS             complement(10878..11942)
                     /locus_tag="U1396_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HEM5342206.1"
                     /translation="MKKIVFTGGGTVGHVTLNLLLIPRFLEEGWEVHYIGDGNGIEHE
                     QVVKSGLDVHFHSISTGKLRRYFSFQNMLDVFKVGFGVLQSVAIIAKIRPQALFSKGG
                     FVSVPPVIAANLLRVPVFIHESDLTMGLANKIAYKFATTMYSTFEQPASLTKVKHVGA
                     VTKVGKTNDKVTPIQLPEILSHFDKSLPTLLFVGGSGGAKVFNDLISQNSAALTERFN
                     IINLTGDSSLNQLDKNLYRVDYVTELYQPLMDLADVVITRGGSNTLFELIAMQQLHLI
                     VPLGRQASRGDQIENALYAEKKGYSKQIDESQLTFASLLVEVDELLKNKEFYIQNMTN
                     SNEIQSVDSFYNLLREDMGR"
     gene            complement(11945..13294)
                     /locus_tag="U1396_001008"
     CDS             complement(11945..13294)
                     /locus_tag="U1396_001008"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000862950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEM5342207.1"
                     /translation="MKMIDIVKNKKVLVLGLAKSGESAARLLDKLSAIVTVNDGKPFE
                     ENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTE
                     VELAYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGYPASSVAQTATA
                     EDTLVMELSSFQLMGTESFRPHIAVVTNLIASHIDYHGTFEDYVAAKWMIQGQMAAED
                     FVVLNFNQKEAKELAEQTKATVVPLSTLEVVDGAYLADGKLYFKGEYIMDADQIGVPG
                     SHNVENALATIVVAKLLGVDRQAIQESLSAFGGVKHRLQFVGEINGVSFYNDSKSTNI
                     LATQKALSGFDNSKVILIAGGLDRGNEFDELVPDLVGLKKMVILGQSAPRVQRAADKA
                     EVETIEALDIADATRKAFAIAEKGDIVLLSPANASWDMYANFEVRGDVFLQTFEELK"
     gene            13465..13742
                     /locus_tag="U1396_001009"
                     /pseudo
     CDS             13465..13742
                     /locus_tag="U1396_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000018958.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            complement(13856..>14695)
                     /locus_tag="U1396_001010"
     CDS             complement(13856..>14695)
                     /locus_tag="U1396_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5342208.1"
                     /translation="SFIMPLIFILGIGLLAYPSVSDYWNSFHQSEAIMSYSDTVSDMT
                     ADQYKEIIDSARQYNQEKPLNWNVTASDIEAYNQELNFNKDGIMGYIEIPKIDVKLSI
                     FHGTDETVLETSIGHLEGTSLPVGGLGTHSVLSGHRGLPSARLFSDLDKLREGDIFTI
                     HVLNETLTYKVDQIRVVEPSDLSALTIEPQKDLLTLVTCTPYGINTHRLLVRGYRIEN
                     VNGSALVTSDAIQIKAIFIAPFIATPILFVILIYIFITTSKTFRSWNRNQVLDDFLVP
                     KKF"
BASE COUNT         4246 a         3364 c         2588 g         4497 t
ORIGIN      
        1 tctggtaact tcctcgctaa ggaacacatt accaagcgtg gtaatcccta cgctagaaag
       61 attctgttca agtgtatcca caatatcgct tcagctagta acaccaatcc ttgccatatc
      121 gcagactttt atgagaaacg aaaaagacaa tcgcaaacga cttcaacgaa gccgcacacg
      181 attgcctcca tacatcgtct cattcggaca atgtattacc tcattatgca taacaaactt
      241 tacgattacg cttcaaccca aaatcggtaa aactgtttat gctctatcat tgtaacacct
      301 tatcaaaaaa tttcaacata aggtgttggt tttgtatgca ctttttacac taaaatgtag
      361 tccaaaataa aacaatttac ttattttgac tattgaactc aaaatatttt tcgtcaaata
      421 ccttgatgga cttgacaaat agtagaaaaa agcctatcgc tagatagact ttaacaaatg
      481 tattgtgatt gcttaggctt caaaaccttg agctactgct tcagcaaagt tttcttccac
      541 tacgcttgca cagtggtcac agattgttgc gccatagctg cgctctgcaa cactagtatc
      601 aatacggcgg caacggtcac atacttcacc gcttgcacgc tctacagtaa aggcaacttc
      661 ttctaccaaa acagcacttt caggagctgc ttccgtggtt actgtcaagt ttgaaacgat
      721 gagcaactga gcaaggtctg cattcaagct ctccaagaag gacttggttt cagctgagac
      781 ataggcagtc aaatgagctt caagtgactt accaatcact ttggcattgc gtgcttcttc
      841 caaggctttt tgtgcctgag tacggaagac cataaagttt tcccaatcag ctaaaagctg
      901 cgcttcatta gcaaaggttt ccacctctgg catttccgcc aactgaacaa attcttctgc
      961 ttcgtgttcc aagtaagacc agatttcttc tgccgtatgt ggtaagattg gcgtcaagag
     1021 cttggtaatt ttcaccaaga tgtcatagaa gacagtttgc atctgacgac gagaaagtga
     1081 tttagcacca tcaatgtaga cgacatcttt ggcaaaatcg aggtagaagg ctgacaaatc
     1141 aagggttaca aagtttacta cagatttata gatgcccatg aaatcataat tgtcgtaggc
     1201 ttcacggatt tgagctacca atttattgaa tttcaccaag agatactggt caacagaacg
     1261 aagctcttcg tatgccaccg catcacttgc aggattgaaa tcagaagtgt tggcaattaa
     1321 gaagcgaagg gtattacgga ttttacggta ggtttcagaa acctgtccaa gaatatccat
     1381 agacacacgg acatcgtttg aagtatcaac ggatgtcacc cacagacgca agatttctgc
     1441 accaaactgc ttctcaacat cacttggaag gatagtattt cctagggatt tagacatctt
     1501 cataccttta ccgtccaata caaagccctg tgacaagaca gccttgtatg gcgcatgacc
     1561 atttacagca acagaggtaa tcaaggatga gttaaaccaa ccacggtatt ggtcagaacc
     1621 ttctaggtag aggtctgctg ggtaggcaag gttttcacgg gcgttcatga caccattcca
     1681 agatgaacca gagtcaaacc atacgtccat aatgtctgtt tctttggtaa attcgccatt
     1741 tggtgaacct ggatgtgtga aaccagctgg caagagatct tttgcttctg atttccacca
     1801 gatgatagaa ccatgctctt caaaaagggc agcaacgtgg tctgtcactt ccttggtcat
     1861 aatcgctgtt ccatcttctg catagaagat tggaagtggc acaccccaag cacgctgacg
     1921 agagatgacc cagtcaccac ggtcacggat catgttgtaa agacgtgttt taccccaagc
     1981 aggaataaag gtcgttgctt cgatttggtc caagatttcc tgacggaatt tagaaacaga
     2041 ggcaaaccac tgtggcactg cacgccagat gattggcttc ttggttctcc agtcaaatgg
     2101 gtaggagtga ttgatcactt cactagcaag gagtaagtcg cctaattttt ccttaaccgt
     2161 tggtacaacc ttgtcataga attgcccttc aaaatcagga cccgcagctt cattcatcaa
     2221 gccacgttcg ttgacagtta ccgcaacctc caagtcatat ttgacaccga cattgtagtc
     2281 atcctcacca aaacctggag ccgtatggac gataccagta cccgagtccg ttgtgacatg
     2341 gtcacccaag ataaccaatt catcaacttc agtatcccat gggtgttcgg tcacgatata
     2401 ttcaaattca gcacccttgt gttttgaaat cacttcgaag gattcccaac cgaatttggc
     2461 tgccaagcta tcaaccaagg cttctgccaa gacatactta cggtcagagc cagcaggttg
     2521 aaccaagaca tagtcaatgt ctgctcccat tgtcaaaccg cgagaagccg ttactgtaaa
     2581 tggagtggtt gtccagacaa cgatgtagct gtctgtatcc aagagcccct tgccatcttt
     2641 gaccttgttg gcataataca gagatgttga gtcaatgtca tggtattcga tttcagcttc
     2701 tgcaagggca gattcagatg accatgacca gtagacaggc ttagcaccgc ggtagatata
     2761 gcccttgtct gccatagcac cgaagacacg gatctgagct gcttcgtagt cttttgtcaa
     2821 agtgatatat ggattttccc agtctgcaga gacacccaag cgtttaaaat catcacgttg
     2881 cttgtcaact tggctaagag cataatcacg acacatttca agatattcaa ctaggtccat
     2941 ttccttgcgt ttaacacctt gttttgccaa gacttgctca ataggaaggc cgtgcgtatc
     3001 ccaacctggt acaaatggag cacggaaacc agacattgac ttagagcgaa cgataatatc
     3061 tttagaaatc ttgtttaaag catgtccaac gtggatattt ccgttagcgt atggagggcc
     3121 atcgtggagg tggaaggcag gtttgccttc attgagttct tggcgacgag catacaagtt
     3181 tgcttcatcc caggcctttt gccattctgg ctcacgtgtt ggtaagcctg cacgcatagg
     3241 aaatgctgtc ttacctaaat tgagtgtttc ttttagtttc atcataactc ctttatttta
     3301 taattaattc cattttcatt ttttgaccat ctaaaccgac aggctgaaag ccaaattttt
     3361 ctaagatgta ccgcatttta tgattaccaa tgacataatt tatagaaatt ttatgacaaa
     3421 gcggatccgc cttcgccttt ccaatcattt gctggacgac ttcctttccg catccacgat
     3481 tttgaaaatc cttatcaatc aacaagcgcc ataaataata actattatct ttggtttcga
     3541 tagataacat tgcaaaacca acaacttttc tgccagatac cacagcatat ggtagaatca
     3601 tccccgaatc tttatataac caagcttggg ctaatgaata ttcaactgat gctactcggc
     3661 gttggtcctc aggtgcaagt tgaacttgta acactgcttc aaagttatcc ttgtttacta
     3721 attctaatcg tatcataaaa ataaaaaaac tcccgccaaa taaggacgaa agttcgtggt
     3781 accaccttag tttagataga gtttccccta tccctctatg ttcgtaacgt gaacagacgt
     3841 ctctccttac tattttcagg aaaaatcaaa caaagtgatg atccatagaa agagattgta
     3901 gggcttccac catctcctac tcgcttaaaa tatttctaac gaccttgtct ttgcttatga
     3961 tttctattat tcttctattg aaagtactac agattctcca ctctcaaaag ctgctgcatg
     4021 acgagttaat tccgcaatct cttctggtgt caattgacgt gtataatcca aactttcttc
     4081 ttcaacaggt aattcttcat ccaaagcctt atgaagaaca tcacgaaagg cttcgtcact
     4141 tgtttgaatg taacttgctg ttgggcggag gatttcctcc cattcagatg aattaaccag
     4201 tgataattgg ctttctactg ttgatttcag acgctgatgg aaaatacgtg tctggttttt
     4261 taattcttca gtttcaatga caactttttt cgcgttgtca gtcgcattac gaagaatttc
     4321 atttgcctta tctttagctt catgtaacaa tgttgccgca tcatagtcag cttgtttaat
     4381 aatatttgcc gcttgatctt cggccgcaac ctttactttc tcagctgtat cttgagctaa
     4441 aagaactgat ttactcaatg attctttcat ctcatcaaaa taagccaaac gttcccgcaa
     4501 atttttcaat tctaactctt gatcatgatt tttacgaatt aaatcctcat aatcacgtgt
     4561 tacaatgtcc aaaaagtcat caacttcatc tgcgtcgtat cctctaaatt ttgtagcaaa
     4621 ggttttatct tttaattcta atgctgtaag tgccatcttt cctcctaagt tttaacaatg
     4681 tctaacttta attttatctt cccttgctta gaaaaaccta aaaattcatt taggcgaact
     4741 ctaccatatc tcctaacact aattaattgc cctatttcaa ctaatttact ggtttgttct
     4801 gtcagaacat aatccaactt cacatgtcca gcctcaatca acttgtttgc agttgccctt
     4861 gaaagattaa atgcgaccga aatcaattta tccaatctca tactagaaac caacacatcc
     4921 tttgaacgcc attcctgtcc aatcggtagt cgaacagtcg tccattcttc ttcctttccc
     4981 ttaacaggga cacgagcaac tttagtgata gattgtaagg caatctgccc aaatttctga
     5041 tcgataaaga caatcaatcg ttcatcatca atcaaaatat cacccaaata ctccctttta
     5101 atccctagtt gattgagaaa agttccaaga acttgtgaat gggataaggt gtgaaatttt
     5161 ctagcatagg acaaatgaag agcggttaac tcaaagtgct tgatgtccaa ctcataataa
     5221 gtcggggcaa taataacccg cgaatgttct gtcgaaacaa ggtcacgact agaaaacgtt
     5281 tgtaactggt agtagttagc aattttgcat acaatttcat cttgtctagg atgtaaaaag
     5341 tgagttaatc tgtatgaata cgtatcttca acttgctgac acatatccat tattttctct
     5401 acaaactctc tttcttccct agaaaaatgt tgcaataagt ttttgtcatt tttcataact
     5461 atgctaacag tagcaataat tgaaccaaga agcgtgttcc catattaagc gcaatcatgg
     5521 ctgccattac ggtccaatcc aaccccataa attgtagatt aaatcgctta aagggtttta
     5581 aaatcggtgc taccagccat tgaatcaaac gaccaatcga gcttgtgtat aggctaggaa
     5641 accaacttag caaagcgtat gccaataaga gataagaata aatctctaca atttttaata
     5701 gtaaaaaaat caaaatttgc atagcgttac cgttttatat caaaatcaaa atttgaatca
     5761 gccgcaccag tagttgtacc agcattagca ttgcgcaatt cttcaatatt gactgtgaca
     5821 tttactggag ttaatagcca catggtattt gagacctttt ttaaatttcc agataatact
     5881 gaacgagcac catccaagta gtctaggcaa cgtcttgctt gttgctccga catatattga
     5941 aaatcaatga gaatactcgc attgtctaat aaaagattta ccatctctgg tgcatcttca
     6001 taacgttttg gaaacttaat atcaattgta gttttgacaa tctctttttc gttattatta
     6061 gtcatcaatt cttgctgcct ttcatgtagg cgttgaagtt gactttctga acgtgcttcc
     6121 cgacgtgtct ctacttttgg ctgctgttcg cgcacaggtg caactgtagt attggcaaca
     6181 cgcattttag gacgatcatt aggcattgaa taggcatctg cctgttcttc aacttcattg
     6241 acttcgtcaa cttcaaagta attaaataag ttcttaaatg tatcttttaa tgccatattt
     6301 tcctcctctc cattattcaa agaatgctga gccaattctc acatatgtag ctccgtgagc
     6361 aatggcgcgt tcaaagtccc cactcattcc catacttaac tctgtaaagg gcatacgtgg
     6421 taagttcctt gtagctagtt cttcttggat ttcctgtatt ttagaaaaaa tctcgtctaa
     6481 ttcatcatct gtagcatcaa tcggtgccat cgtcatcaat ccaacaagtt caatgttctc
     6541 caataaacta atttcagcaa gtgccgcatc aatctcagat actgcaaagc catgcttact
     6601 ctcctcaccg gaaacgttga cttggaggaa acacttgact attttagtcg cacgtttatc
     6661 tatttcctga gctagtttga cagagtctag ggcgtggaaa taatcaacaa atggaataat
     6721 gtccttgacc tttcttctct gtaaagtccc tatcaaatgc catgtcaatt gtttgtctgc
     6781 tagggcatta tacttttcta agaactgatc gactcgattt tctccaatat gagtaattcc
     6841 agtattcact agctgattag caatagagct gtcaacatat ttggtgacag ctattacctt
     6901 tactgattca cttggacgac ctgccttctc agcagctttt gcaactgctg aaaagatagc
     6961 atccttattc ttttgaaaat tcattttagt ttagcgatta cggaagaatg gtggtgtatc
     7021 caattcatcc tcatcatgat ccattgtaaa tttttcgact gaaacagtgg atgttggttc
     7081 tgtgtcagtt ggacgaatca agttttcacg acgcaaatcc cactctccga aggcagaagc
     7141 tttcggcgct tcagtttgtt gtgcagctcc acgagttggt gctgatgcta ctgaatgatc
     7201 aaagcgttga gaagggcgtg gtgaaacagc ttccatgcga tggcgggctg gtttatcagc
     7261 agtatcttga cgaacacccg tagccacaac ggtcacacga atctcatctt tcattgtttc
     7321 atcaatagat gtacccaacc aaatgttaac accttgaccc gcagcctgat taacgatttc
     7381 tgaagcatct tctgcttctg tcagagtcat gtcatagcca cctgtaacat tgacaatgac
     7441 atcctctgca ccatcaattg ttgtttcaag aagaggagaa taaatcgctt tacgagccgc
     7501 ctcaatcact cggtcctcac cagtaccgat accgataccc atcaaggcgt ttcctttgtt
     7561 ttccataact gtcttcacat ctgcaaagtc caagttaatc aaaccaggat ttgtaatcaa
     7621 gtctgtaatt ccttgaacac cttgacgaag aacattatca gcttcgctta gtgcttctaa
     7681 aagcggtgtt ttcttatcaa caatttcaag aaggttgttg tttgaaataa ttaaaagtgt
     7741 atctacttgt tcacgaagac cttcaattcc ctcaatcgca aagtttccac gtttatttcc
     7801 ttcaaaacca aacggacgag tcacaactgc gacagtcaac gcacccaagt ttttagcaat
     7861 acgtgcaata acaggagccg caccagtccc tgagccaccg cccataccag cagtgatgaa
     7921 gaccatatct gcaccagtta atacattagt caatgcttct tcgctttcct cagcagcttt
     7981 ccgaccaacc tcaggttgac ctccagcacc caaaccacga gtcaatttag gacctagttg
     8041 gataactgtt tcagctttag agctacttag cgcttgtaca tctgtgtttg ctgcaataaa
     8101 ctcaacccca gcaacacctt cttcaatcat acggttaatc gcgttcccgc caccaccgcc
     8161 gacaccgatt actttaatga cagcaccatg actagctgct gcttcaaatg aaaatgccat
     8221 agtttaaatc accttttctt ttctcttatt caaacatgct gccaaataaa ccacgaatgc
     8281 gatctgtgat gtttccctta gcagctggac gaacttcttc ttcctcatca tggtaaatag
     8341 gagcaacttg ttcctctacc tgatcaactg tgttcaattc gttcacgatt tctctttgaa
     8401 ttggctgact aatccgagga cgagcaacag gaatttcaac tggcttatgt ctcaaggtag
     8461 tttcaccatt tactgcatgt tgggcaatat tttctacatc ttctaactca ccaacatact
     8521 caacaaagct aatcacactt gcaaatgctg gattgcggat accaatctga tttggaacaa
     8581 aaagcttagt gttaacacca aacacttctt gggccaattc tgtaattcct ggtaagatag
     8641 caccaccacc tacaataaca atgcctcctg gtaaatctag agcacgtgta cgctccaaat
     8701 cttgtttcac acggtcaaaa atctgacgca gacgtgccgc aatcacttct gaaaggtagc
     8761 gctcggtcac ttcaactgga gcgttttctc caatcacttc gacagtgaat ttttccttat
     8821 cacttgcatc ttgcggatag gcaatgccgt agttgtattt caagttttca gcaatactct
     8881 ttgaagttgt caatactttt gaaatatcgt ttgtgatata atctccacct tcttggtaga
     8941 tgtttgtgta ttgcaactct tggccacgca taacagccac agtcgtttga ccaccaccaa
     9001 gatcaatgat agtcgcacca aactcacgtt caccttcatt caatacagag cgagttagtg
     9061 ccaacggaga aattacaata ttttcaactt ggacacctgc acgctccacc gttttacgaa
     9121 gattgtgaag aatggtacgt ggacctgtat acagcatacc acgcatttcc aagcgaattc
     9181 ccatcattcc acgagggtcc ttaatgcctt ggaatccatc gacagtgaac tcttctggaa
     9241 taaatgaaat cacttcgcgt tccggagtca tactctttgt caatgctgat tttacaacat
     9301 tctcaacatc caagtctgta atttcttgtg aatctgttgt aacaggaatc atcccttgag
     9361 tcggttcaat ctgaagaagg ttggcaggta atccaacatt taccttttca atgcggatac
     9421 ctgacttttc ttctgcctgc tcgatcgctt ttttaatcgc tccagcagcc acctcaatat
     9481 ttacaataat tccatctttg acgccagcac tttttacatt gctgacccca atcacattca
     9541 tttcgttatc aatatattct gcaaccaaga ctttaacgga gcttgtacca atatctaatc
     9601 ccgtaaaaaa gccgtttcta gccattctat cagtcctctc ttacttccaa ctttaacaaa
     9661 tcatcttcca ttttgaaaaa tagtataatt agtcatcatt cattatacca taatataccg
     9721 aattatggtg tttttaaagg atttttttat tactttttct ttacaaaatt atctatttca
     9781 gctcgcatat ctataaatac caacttccat atcaattgtt gttggaacag tcacttctgc
     9841 tgctattttt gtatagtagg acaccttctg gctaatctca ctcaacggga ctaatacagt
     9901 atttccatct ctcatattga atgtcagcaa atccacggtc actttacttg gcgttaaatt
     9961 tattgtctga atagcagaac gaattcctgc atctatttta cccaattcaa tggccagttc
    10021 cttgattaat tccttgtcgg ataaatttat cgttgtgtag ccttctggca tggaatcctg
    10081 tgaaatcggt tcaccgccaa tctctccact agacaatact ggataccact gactttgttg
    10141 ctgaatgtag cctattattg cgtattcttt gatgtgaatg gtaaaggtag ctggaaactg
    10201 gaacttgatt gtcgctgtct caacggacga actattcttc ttaatattct ttgcgtaagc
    10261 atctgcatgc aaagctacag tcacattgta atcatccgga gagataaggc tataattttc
    10321 tacttgctca gcagttagtc gctcatttcc gacaacctct atttgttttt tcttgctggt
    10381 tggagaaata aaatacaagg ctagagctgc cagtaacaaa ctcgtcacaa gaaccggaat
    10441 agctttccag actactttgg aaggaatatc aacttttaaa gtttgaacct tttcccctgt
    10501 ttccttttta gatttcagac tctctgtttt tctttctatt ccctgaaaaa ggaccctttt
    10561 actcttttta gcttctgggt tctcctgttc tgtctgtccc tcgtcaactg cctgaatttc
    10621 cgcagcatct ttatgagcaa ggtaggcttg atggcgtgct ttccattgtt cgaaaaaggc
    10681 acttttttca tcatccggag cagtcatctc aggtatgtct acatccgtag aaacatccgt
    10741 agaaagtcct ttttcttcgg ctaatacaga ttctttctcg gctggtgaga tttgttctga
    10801 atccaattct acttgagatg cctgttccac ttctagcact gattcttcta catttgaatc
    10861 tttttccgtc ataggaccta ccttcccata tcttctctaa gcaaattgta aaaactatct
    10921 actgactgaa tttcattaga atttgtcatg ttttggatat aaaattcctt atttttcaat
    10981 agctcatcta cttctactaa caggctggca aatgtcaatt gactttcatc aatctgctta
    11041 gaatatccct ttttctctgc atagagagca ttttcaatct gatcccctcg actggcctgt
    11101 cgtcctaggg gcacaatcaa atggagttgt tgcatggcaa tcaactcaaa cagagtattg
    11161 gaaccaccac gagtaataac gacatccgct aaatccatca acggttgata aagttctgtc
    11221 acatagtcaa ctctatatag gtttttatct aattggttga gactactatc ccctgtcaaa
    11281 ttgataatat tgaatcgttc ggtcagagca gcactattct gactgattaa atcattaaag
    11341 accttagcac cgcccgaacc acctacaaac agtagggtcg gcagactttt atcgaagtga
    11401 ctgagaattt ctggcaactg gattggtgta actttgtcat tcgttttccc cacttttgta
    11461 accgcaccaa catgttttac tttagtcaag ctagcaggtt gctcaaaagt actatacatg
    11521 gttgtcgcaa atttataggc tattttattg gccagtccca ttgttaagtc tgattcatgg
    11581 ataaagaccg gaacccgcag caaattagca gcaataactg gcggaaccga tacaaaccca
    11641 ccttttgaaa aaagagcttg cggacgaatt ttagcaataa tggccacgga ttgaagaaca
    11701 ccaaaaccaa ctttaaacac gtccaacata ttttggaaag agaaataacg gcgcaatttt
    11761 ccagtcgaaa tagaatgaaa atggacatct aaacctgatt tcacaacctg ctcatgctca
    11821 ataccgttcc catcaccaat atagtggact tcccagcctt cttccaaaaa tcgcggaatc
    11881 aaaaggagat tgagcgtcac gtgcccaaca gtccctccgc ctgtaaaaac aatttttttc
    11941 atgattattt caactcctca aaggtctgta agaagacgtc gccacgcact tcaaaattgg
    12001 catacatatc ccagcttgca ttggctggac ttaaaaggac aatatctcct ttttctgcaa
    12061 tggcaaaggc ttttctagtc gcatccgcaa tatcgagagc ttctatcgtt tccacttctg
    12121 ccttatctgc agcacgttga acacggggag ctgattgacc aaggatcacc attttcttta
    12181 gtccgaccaa atcagggact aattcatcaa attcattccc acggtccaag ccacctgcaa
    12241 tcaaaatgac cttgctattg tcaaaccctg aaagagcttt ttgagtcgcc aagatattgg
    12301 tagacttact atcattgtag aaggaaaccc cgttgatttc acctacaaat tgcaagcggt
    12361 gtttgacacc tccaaaggca gacaaacttt cctgaatcgc ttggcgatct actcccaaca
    12421 attttgcaac cacaattgtt gccaaggcat tttcaacatt gtgtgaacct ggaacaccaa
    12481 tttggtcagc atccatgatg tattcaccct tgaaatagag ttttccatct gccaagtaag
    12541 ctccatcaac tacttccagc gtagaaagag gaactacagt tgctttggtc tgttcagcca
    12601 attccttagc ttctttctgg ttgaagttga gcaccacaaa atcctcagcc gccatctgac
    12661 cctgaatcat ccatttagct gctacatagt cttcaaaagt cccatgataa tcaatatgac
    12721 tggcaatgag gttggtcaca acggcgatat gcgggcggaa agattctgtc cccattaact
    12781 ggaaagatga taattccatc accaaggtat cctctgcagt cgcagtttga gcgaccgaag
    12841 atgctggata gccaatattt ccacataatt ttgcaggttt atttcctgca ttcaagactt
    12901 ctgcaatcat ggtcgttgtc gttgtcttgc cgttcgaacc tgttatcccc acgattggag
    12961 catctgatac caagtaggcc aattcaacct ctgtccatac tggaattcct ttgccaattg
    13021 ctttttcaac cataggatta tcatagcgaa ttcctggatt ttttaccatc aaagcgaaat
    13081 cttcatccaa taattccaag ggatggctcc cgcaaataac acggatacca tcttccaaca
    13141 aagattgagc agtcggattt tcttcaaaag gctttccatc gttaacagtg acgatagcac
    13201 tcaatttatc taggagacgg gctgcagatt cccctgattt agctaaacct agcactagca
    13261 ctttcttatt ttttacaata tcaatcatct tcatctcaat tacctttact ttctaacacc
    13321 ttattttacc ctttacgaag acctttttca agccagagga cagaaaagta aactctaccc
    13381 gtagcgctag ttcatttcaa aatacaataa aaagcccaaa tggactatac tgtaagcgac
    13441 gaaacataca gaggggtagt ccaaatgagc cacttacagt atactgctaa atctcatcat
    13501 ttgcaatgga atgtacgcca attatcacaa atttctcatc atttctacca aaactattgc
    13561 ccagattcct tttaacttcg gcgtaatgta ggctttcaga tagattactc cttgtcttgc
    13621 ttttgttaca agctgaacta ggtatgacat ctcaacgaca tttctacaat atctgccacc
    13681 tctttcctcg tggtccgtta ctagaaagaa gtcgtttcaa tcgtcggtct aggcaattga
    13741 tttgagttga caggaggtta gaagttgaac aattacctca ttcagccata ttgtctaatg
    13801 tctataatag aaaaatgttc cagagtcaaa tcgactttga aacattttca atagttcaaa
    13861 atttcttggg aactaaaaaa tcatccaaca cttgattcct attccaagaa cgaaatgttt
    13921 tactagttgt tataaaaata taaattaaga ttacaaatag aattggagtt gcgataaatg
    13981 gagcaataaa aattgcttta atttggatag catcagaggt aaccaaagca ctaccattaa
    14041 cattttcaat acgatagcca cgaactaata gcctatgtgt attaataccg tagggtgtac
    14101 aggttaccaa ggtcaataag tctttctgag gttctatggt aagagccgat aaatctgatg
    14161 gctcaaccac tcgaatctgg tccactttgt aagttagtgt ttcattgaga acatgaatgg
    14221 taaatatatc gccttctctc aacttatcta aatcagaaaa cagacgggca gatgggagcc
    14281 cacgatgccc tgaaagtaca ctatgagttc ccaaacctcc tacaggcaac gatgttcctt
    14341 ctagatgtcc aatagaagtc tctaaaaccg tttcgtctgt cccatgaaat atagataact
    14401 tgacatcaat tttaggaatc tcaatatagc ccatgatgcc atctttattg aaattcaatt
    14461 cctgattata ggcttcaatg tcggatgcag tcacattcca gtttaagggt ttttcttgat
    14521 tatactggcg cgcactatca atgatttctt tgtattggtc agctgtcata tctgatactg
    14581 tgtcagaata ggacatgatg gcctctgatt ggtggaagga attccagtaa tcactgaccg
    14641 atggataagc caatagtcca atccccaata taaaaattaa tggcatgata aaaga
//
LOCUS       DASGBY010000045        14621 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.045, whole genome shotgun sequence.
ACCESSION   DASGBY010000045 DASGBY010000000
VERSION     DASGBY010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14621
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.045"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(78..1121)
                     /locus_tag="U1396_001011"
     CDS             complement(78..1121)
                     /locus_tag="U1396_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent alcohol dehydrogenase"
                     /protein_id="HEM5342209.1"
                     /translation="MKTAIYEKSGKMTVAEIEKPSLQAKDDVIIKVVRACVCGSDLWG
                     YGEDIHHDHGDTNSGHEAIGIVEEVGEDITTLVPGDFVIVPFTHGCGHCDACRAGFDG
                     TCDNHPGYTNWGNNYQSQYIRFHYGNWALVKIPGQPSDYSEGMIKSLLTLADVMPTGY
                     HAARVADVKPDDKVVVIGDGAVGQCAVIAAKMRGASQIVMMSRHTDRQQMALESGATA
                     IVAERGEEGIAKVREILGGGADAALECVGTEASIDQALGVLHNGGRIGFVGVPHYNNH
                     ALGSTFAQNIIIGGGSASVTTYDKEILLDAVLKGDINPGRVFTQTYSLDNIDQAYKDM
                     ANRKTIKAMITVD"
     gene            1275..2135
                     /gene="tehB"
                     /locus_tag="U1396_001012"
     CDS             1275..2135
                     /gene="tehB"
                     /locus_tag="U1396_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HEM5342210.1"
                     /translation="MTVLVPYKRMPIWNQDTVPQHFLTKHNTKVGTWAKIKVLRGQLK
                     FEPISDDNEILGEYVYGPTADIPFVEPQAWHRVTLLTEDTEFFLEFFCQPEDYFAKKY
                     DYTRTHSEVLEALKRIEPCKVLDLGCGHGRNSLYLAQQGFEVTAVDKDVPSIRTLLQV
                     KEVEDLDLQAGTYDINSASLEQDYDWIISTVVFMFLERDRVPAIIRNMQEQTRPGGYN
                     LIVAAMDTEDAPCPMNFSFTFGVGELKEYYRDWELVKYNEDFGQLHKRDENGHFLKMR
                     FATMLARKKG"
     gene            2329..4152
                     /locus_tag="U1396_001013"
     CDS             2329..4152
                     /locus_tag="U1396_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HEM5342211.1"
                     /translation="MKKTFVRIATFLMLVCLFPVQLVQACSGFIIGKGLTTDGSILYG
                     RTEDYPYPPDNGAHNKNYIVVPAAAYAKGDMLVDESFGFTAPHLANEFKYTSTPDAAR
                     GDGSNGNFGAHGFNEKGVSMTATVTAIPNKKVLAVDPLVTAGGLGEAILIDYVLPRVT
                     SAREGIELIAKTIDEKGSAEGNIIVIADKNEVWYMEILSGHQYVAIKFPEDKYAIFAN
                     TYYLGHVDFTDTENVIASAKVEEVAKQAENYMMVDGKFHIAKSYGPENYADGDRSRTY
                     AGIKLLDPASSVTYEDAVYDLLRQPTDPSRRFSLQDTFALQRNRFEHLPEFRPDDEAG
                     KVKQGDNGANDQAADATYKYALGNENVIDAHVYQINSSLPSAFGGTVWLGLAQTRNTP
                     YVPFYGIVTDTYEAFKNRSASYDTNSWYWTVQNIDKMAISHPELFGTSIQEKWIALEK
                     EWIASQAALDAQYAGLSEDAAVALAPTVTEATLARSAEIFAQLKAVEAEMMAKIEAAT
                     TPSSSSTEPSTSTEPSSSGTETSTSTSQSTSDSNTGGATDTSSSSGTVVPSDKKVTPT
                     NKKGKSNLPSTGEQVSILLVALGVAGILTAIFLHRKKSSKE"
     gene            4273..6723
                     /locus_tag="U1396_001014"
     CDS             4273..6723
                     /locus_tag="U1396_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEM5342212.1"
                     /translation="MKQASYPIQGMTCASCALTVEKAVGKLIGIEEASVNLATEKLSV
                     SYDEKLLGLEDIRQAVEKAGYQLVDNLVTESYDISGMTCASCALTVEKALGKLEGVEE
                     VSVNLATEKATIRYSRHRQNPASLERAVEQAGYQLIRPEKVEGAADKGPSKEEKLWHR
                     FVWSAAFTLPLLYIAMGPMLPWGGLPLPALLHQPLVYAISQVILLIPILYIGRSFFQK
                     GFKTLLQGHPNMDSLIAVGTGAALVQGLLMIAFLLMGKEVAMHGHHPELYFESAAVIL
                     TLITLGKYFEARAKGQTSEAIKKLMNLAPKTAQVLRNGQEIQVPIEEVVVGDQVVVRP
                     GQQIPVDGQVLEGQTRVDESMLTGESLPVKKALGDNVFGGTLNQQGAITMQATKVGRD
                     TTLAQIIRLVEEAQGSKAPIAKLADQVSAIFVPVVMGLALLSGLAWYFLGQESWIFSL
                     SIIIAVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSGQAIETLQGVNTIVFDKTG
                     TITEGKPQVTDVHLLSTKNREQVLQLAASSEQFSEHPLAQALLQAAQTEKIDLLPATD
                     FQALSGRGLSVIIAEQTIYLGNERLMREQGIDVSKGRAVAEAFAQQAKTPVFLASQQE
                     VLAVIAIADKIKETSRQAVQALQTIGLEVVMLTGDNEKTAKAIAKEVGIEQVISQVLP
                     DDKANQVKHLQEQGKTVAMVGDGINDAPALAQAHVGLAIGSGTDIAIESADIVLMHSD
                     ILDVVKAVKLSQATMRTIKQNLFWAFAYNVIGIPVAMGLLHVFGGPLLNPMFAGAAMA
                     LSSVSVVLNALRLKTYKL"
     gene            6802..7287
                     /gene="tpx"
                     /locus_tag="U1396_001015"
     CDS             6802..7287
                     /gene="tpx"
                     /locus_tag="U1396_001015"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEM5342213.1"
                     /translation="MTTFIGKPVTLVGPQLRVGDVAPDFVLMANDLSLKSLKDFGKQT
                     KVISVVPSIDTGICDTQTRRFNQELADRDNTVVITVSADLPFAQKRWCGAAGLEDAIT
                     LSDYYDHAFGKSYGVLMREWNLLARAVFVLNADNKITYVEYLDNVNEHPDYDAALEAV
                     K"
     gene            7382..7717
                     /locus_tag="U1396_001016"
     CDS             7382..7717
                     /locus_tag="U1396_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase BlpT"
                     /protein_id="HEM5342214.1"
                     /translation="MEKTQIIQDVLALIQDLNRAFQADKVGTADEQRFQHNLTETTRI
                     LSEAESVTNTELIAIEKFYRSTSFLVGLGDLRLSETSRQAWRAFDRYYYETIREELKL
                     YGGSAIAQV"
     gene            7806..8507
                     /locus_tag="U1396_001017"
     CDS             7806..8507
                     /locus_tag="U1396_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342215.1"
                     /translation="MSYIQVKNSSKYYQMGDATIVANDGVSFEIEQGELVIILGSSGA
                     GKSTLLNILGGMDSNDEGEVWIDGVDIAKLSSHELTNYRRDDVGFVFQFYNLVANLTA
                     KENVELAAEIVKDALDAEEVLEQVGLGHRINNFPAQLSGGEQQRVAIARAVAKKPKIL
                     LCDEPTGALDYQTGKQVLQILQDMSRTQGTTVIIVTHNSSLAPIADRVIRMRDARVHS
                     VELHAEPQDIASLEY"
     gene            8507..11884
                     /locus_tag="U1396_001018"
     CDS             8507..11884
                     /locus_tag="U1396_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5342216.1"
                     /translation="MGETMKKKIYWKDMRQSLLSSKGRFLSIFSLMMLGALALTGLKV
                     TAPNMEKTAQAYIASHRTMDLAVISGLGLSQADLDELETIEGATLEAGYFKDVVTNEG
                     QTAIRLFSAPQTLSTYKLVEGEMPSQKGQIALSASFKNRYKLDDTVQVTESDKDGKIL
                     TQTSFTLVGFVASAEIWDNETMGMAASGDGQLGGYGLVSQDTFKSEVYTIARIRYDDL
                     VDLPYYSQAYQDRLDQHQEDVEKLLANNDEQRLAAIQSDGQTDISKGEEEIAQAQSQL
                     EQAESELETGEEQLATGRREFARGRAKVVQTEAELRAAQAQLLKNKFELEESKKELDG
                     RKAQLEQTASFLDGYQMELETSAQQLEEAKQELDSQNAQLSQTASQISTGRASWFQAQ
                     QELDLEIANHLQEGQTLSDYPDLLARQEGLDVEKSRLDQMESAHEQANQAYLQGYDYY
                     QTKQNEYNSNLAQYQTWNQEYQAGLARYQAGLSQYEQGIAAYNKGVEDYEWGLSQLES
                     SNQLLRQEEFRLEEADKELSQAQSQFSEKKATADQEISQAQTEIAQAKSDLSKLEKAP
                     YQVYTRSSLPGGDGYTTYSNATRSIAAVGNVFPVVLYLVAALVTFTTMARFVDEERTQ
                     SGLFKALGYTNRQIMAKFILYGLTAGLVGTIVGIIAGNLLLSPLISNIITQTTVIGPA
                     KLHFYPLWTGLALLLSLASSVLPAYLVARRELTEKPAQLLLPKPPVTGSSIWLEKWPA
                     IWSRLSFTHKVTARNIFRYKLRMLMTIFGVAGTVALLFGGLGIRSSISGVVQRQFGEL
                     IHYDMLVVENSRATEEELDKLTHFLQSDQVRQSLPVAFEQLNQTVEEDGQRKNLSISL
                     YISDRRDFGNQVSLESSTGQPIKLSDRGIVLTEKLAQIYGVSVGDKLSLTLEDKEVSV
                     RVEAVADMYAGHFIYMTDSYYEQVTGKQKTANAYLVQLKDSQLGHIQTLASQLLAMPA
                     VRSLVQNTSLIDMLTTIAGSLQTIMTILVILSILLGLVILYNLTIINMSERIRELSTI
                     KVLGFHNKEVTMYIYRETIVLSLIGMLVGLVGGIYLHKLLLAMIGSDSIRFNPSVGLE
                     VYLIPILAISGILAVLGWYVNHHLRKVDMLEALKSVD"
     gene            complement(12396..13568)
                     /locus_tag="U1396_001019"
     CDS             complement(12396..13568)
                     /locus_tag="U1396_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5342217.1"
                     /translation="MDVLYQSCAGIDVHQANIVVCILHGPLTSTRPKREMATFDTTTK
                     GLRACHDFLSQFHVEAVGMESTGVYWRPVWHALCDDFKLILAQPAHMKAIPGQKTDKK
                     DAHWIAKLTRIGLLPRSFVPDEAIQELRELTRQRKHYVESRNRETNRIHKILQSGGIK
                     LTTYIEDIMGLSGRNLLQLLVDGTPITPRIVHQSVYTSLKKKVPQLLEALDGYFSDHH
                     RFMLKQSLEIYDFYQKQIELLEERMNVYLSQYENHVEILDSIPGIDVITASVIISEVG
                     VDMSQFPTAGHLASWAGLCPGNNESAGKKRSTKIRHGNSYLKKCLCQAAFAIKKQKGS
                     PLADRFYQIQSRRGSQKATIALAHQLLKIAYILLKEQITYPEFLAQKKTTRDELVA"
     gene            complement(13824..14075)
                     /locus_tag="U1396_001020"
     CDS             complement(13824..14075)
                     /locus_tag="U1396_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342218.1"
                     /translation="MFKEFNKEYYRSLNFYLMIMLFLGSIGEWLNKGPSLWLGLLLFA
                     TVGTARSAFWSKEWTLKANWQIYLCIAFLLVGAWVEFFV"
     gene            complement(14085..14338)
                     /locus_tag="U1396_001021"
                     /pseudo
     CDS             complement(14085..14338)
                     /locus_tag="U1396_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028405.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4163 a         3055 c         3421 g         3982 t
ORIGIN      
        1 gaaatcctgg tcttttttgt tatcggaaaa caaatacccc agacagtttc gagactatct
       61 ggggcttatt atttatctta atctaccgta atcatagctt taatcgtttt ccggttggcc
      121 atgtctttgt aggcttggtc gatattgtcc aggctgtaag tttgggtgaa aactcgacct
      181 gggttgatgt cgcctttgag aacggcatcg agcaaaattt ccttatcata ggttgtgaca
      241 gaagcagagc caccaccgat aatgatattt tgagcaaagg ttgagccaag ggcgtggttg
      301 ttgtagtgtg gtacaccgac aaaaccgata cgaccaccat tgtgaagcac gccgagggct
      361 tggtcaatag aggcttctgt accaacacat tcgagggcag catcagcgcc acctccaaga
      421 atttcacgga ctttggcaat tccttcctca ccacgttctg ctacgatggc agtagcccct
      481 gattccaaag ccatttgttg gcggtctgta tggcggctca tcatgacaat ctgagaagct
      541 ccgcgcattt ttgcagcaat tacagcacat tgacccactg caccatcacc gatgacaaca
      601 accttgtcat caggtttgac atctgctaca cgggctgcgt ggtagccagt tggcataaca
      661 tctgccagag tcaagagaga tttgatcatg ccttctgagt agtcacttgg ctgaccagga
      721 attttgacca aggcccagtt gccgtagtgg aaacgaatgt attgagactg gtagttgttg
      781 ccccagttgg tgtagcctgg atggttgtca caagtaccgt caaagccagc acgacaggca
      841 tcacagtgtc cgcaaccatg tgtaaatgga acgataacga agtcaccagg aacaagtgtt
      901 gtgatgtctt cgcctacctc ttcaacgata ccgatggctt catgaccaga gtttgtgtca
      961 ccgtggtcat ggtgaatgtc ttctccgtag ccccaaaggt ccgatccaca gacacaggcc
     1021 cgaacgacct tgataatgac atcatctttg gcttgaaggc ttggtttttc gatttctgca
     1081 acggtcatct taccggattt ttcataaata gctgttttca tattcatcac acatttactt
     1141 gtcagtaaat atcctttctg attaatatgg aatattatac accttggagt tcactccaag
     1201 tcaagaaaaa aataggtttg aattcatatt tcctttgtga tagactaagt gtatcggaaa
     1261 gaaaaggaga gataatgact gttttagttc cttacaaacg catgcccatt tggaatcagg
     1321 atacggttcc ccagcatttt ttgaccaagc acaataccaa ggtgggtact tgggccaaaa
     1381 tcaaggtctt gagaggtcaa cttaaatttg agccgatttc agatgataat gagattttgg
     1441 gagaatatgt ctatggtccg acagccgata ttccctttgt cgagccacag gcttggcatc
     1501 gggtgacttt gctgacagag gatacggagt ttttcttgga atttttctgt caaccagaag
     1561 actattttgc caaaaagtat gactatactc ggacacattc ggaagtcttg gaggccttga
     1621 agagaattga gccttgtaag gtcttggacc tgggctgtgg tcatggtagg aacagtctct
     1681 acttggctca gcagggattt gaggtgacgg cggtcgataa ggatgtgcca agtattcgga
     1741 cactcttgca ggtcaaggaa gtggaggact tggacttgca ggctgggacc tatgacatca
     1801 attcagccag tctggagcag gactacgact ggattatctc gactgtggtc ttcatgtttt
     1861 tggagcggga tagggtacca gccattatcc gcaatatgca ggagcagaca cgacctggtg
     1921 gctataactt gattgtggcg gccatggata cggaagatgc gccctgtcct atgaatttct
     1981 cctttacttt tggagtaggt gagttgaagg aatactaccg tgactgggaa ctggtcaaat
     2041 acaatgaaga tttcggtcaa cttcacaagc gggatgaaaa tggccatttc ctcaagatgc
     2101 ggtttgcgac catgctggct aggaaaaaag gataaatatt tttttgaaag cacttgcaag
     2161 gcaggtgctt ttgcgttaca atgtaggtgc aaatgggtaa atcatattat actccacgaa
     2221 aatcaccttc tggttggata agagacttgt gtaaaatagt ctctgagttt atatctctgg
     2281 agggcgccta cttctgattt tcacagagta tcaggaaagg agaagtctat gaaaaagact
     2341 tttgttcgta tagccacatt tctaatgttg gtttgcctat tccctgttca acttgttcaa
     2401 gcctgttcag gctttattat tgggaaaggg ttgacaacgg atggttctat cctttatggt
     2461 agaacggaag attatcccta tccaccagat aatggagcgc acaataaaaa ttatattgtg
     2521 gttccagcag cagcctatgc caagggggat atgttggtgg atgaatcatt cggtttcaca
     2581 gcaccacact tggcaaatga gttcaagtac acctctacgc ctgatgcggc acgtggggat
     2641 gggtcaaacg gtaattttgg tgcgcatgga tttaatgaaa aaggtgtgtc catgactgct
     2701 actgttacag ctattccaaa taaaaaagtt ttagctgttg acccattggt aactgcgggg
     2761 ggactaggtg aggccatttt gattgactat gttcttccta gagtcaccag tgcgcgtgaa
     2821 ggtatcgaat taattgcgaa gacaattgat gaaaaaggtt cggcagaagg gaatatcatt
     2881 gttattgctg ataagaatga agtttggtac atggaaattt tgtcaggcca ccaatacgta
     2941 gccatcaagt tccctgaaga caagtatgca atttttgcaa atacttacta tctaggtcat
     3001 gttgatttta ccgatacaga aaatgtgatt gcttctgcaa aggttgaaga agtagccaaa
     3061 caggctgaaa attatatgat ggttgatggg aagttccata ttgccaaatc atatggacct
     3121 gagaattatg ctgatggtga tcgttctcgg acatacgctg gtataaaatt gttagatcca
     3181 gcatcgtctg taacctatga agatgctgtg tatgatttgc tacgtcagcc aacagaccca
     3241 agtcgtcgct ttagtttaca agataccttt gccttacaac gtaaccgttt tgaacatctt
     3301 ccagaatttc gtccagacga tgaagcaggt aaggtaaaac aaggggataa tggtgcgaat
     3361 gaccaagcgg cagatgcgac ttataaatac gctcttggta atgaaaacgt catcgatgcc
     3421 catgtttatc agattaatag tagcttacca tcagccttcg gtggcacagt atggttgggc
     3481 ttggctcaga caaggaatac accgtatgtt ccattttatg gtattgtgac tgatacttat
     3541 gaagccttta aaaatcgctc agcttcttat gataccaatt catggtactg gacggtacaa
     3601 aatattgata agatggccat ctcacaccca gagttatttg gtacatcaat tcaagaaaaa
     3661 tggattgcac ttgaaaaaga atggattgct tcacaggcag ctcttgatgc tcaatatgct
     3721 ggactttcag aagatgcagc cgtagctctg gctccaactg taacagaggc aaccttggct
     3781 cgttcagcag agatttttgc ccaactaaaa gctgttgaag ctgaaatgat ggcaaaaatt
     3841 gaagcagcaa caactccgtc atcaagtagt actgaaccat cgaccagcac tgagccatca
     3901 tcaagtggta ccgaaacttc aaccagtaca agtcagtcta caagtgattc taacacagga
     3961 ggagctacgg atacttcctc atcaagcgga acagtagtgc cttctgataa gaaagtaaca
     4021 cctaccaata aaaaaggcaa atcaaatctt cctagtacag gtgagcaagt cagcatcttg
     4081 ttggttgcgc taggtgttgc aggaatttta acagcaattt ttcttcatcg gaaaaaatcc
     4141 agtaaagaat aaatgaatat gtaaaagtag gttggattga tttcaatcta cttttttgaa
     4201 acaattttgt ttacaaatgt agtcatatgt tgtataattt gtttacagat gtagtcgaaa
     4261 gaggagtaac ctatgaaaca agcaagctat cccattcaag gtatgacctg cgcttcctgt
     4321 gctctgacgg ttgagaaagc ggttggtaaa ctaataggga ttgaagaagc cagtgtcaac
     4381 ctagcgactg aaaaattgag tgttagctat gatgaaaagc ttttgggact agaggatatt
     4441 cgtcaggcag ttgaaaaggc gggttatcag ttagtcgata acttggtgac cgagtcttat
     4501 gacatttcag gcatgacctg tgcttcctgt gctctgacgg ttgaaaaagc tctgggcaaa
     4561 ctagagggtg tagaagaagt ctctgtcaat ctggcaacag aaaaggcgac tattcgttat
     4621 agccgtcata ggcaaaatcc agctagtctt gaaagagcag ttgagcaggc aggttatcag
     4681 ttgattagac cagaaaaagt agaaggggct gcggacaagg gaccgagcaa ggaagaaaag
     4741 ctgtggcatc gatttgtctg gtcagcagca tttactcttc cactgctcta tattgctatg
     4801 ggtcctatgt tgccttgggg agggcttcca ttaccagctt tgctccacca accgctagtc
     4861 tatgcgatca gccaagtcat cttgctcatc cctatcctct atatcggacg cagttttttc
     4921 caaaaaggct ttaaaactct cttgcaaggc catccaaata tggattcctt gattgctgtt
     4981 gggacagggg cagccttggt tcaaggtctt ttgatgattg cgtttcttct gatggggaaa
     5041 gaagtggcca tgcacggtca ccatccagaa ctgtattttg aatcagccgc cgttatcttg
     5101 accttgatta ccctaggaaa atattttgaa gctagagcta aaggtcagac ttctgaggcc
     5161 attaagaaat tgatgaatct ggctcccaag acggcccagg tcttgcgaaa tggtcaggaa
     5221 atacaagtgc cgattgaaga agtggtggtc ggtgaccagg tcgttgttcg tccaggtcag
     5281 cagattcctg ttgatggtca ggttctcgaa ggccagacac gtgtggatga gtctatgctg
     5341 acgggtgaga gcctaccagt gaagaaagct ctaggcgata atgtttttgg cggcaccctt
     5401 aaccagcaag gcgccattac catgcaggct accaaggttg gtcgtgatac gactctggcc
     5461 cagattattc gcttggtaga agaggctcaa ggttctaagg ctcccatcgc caaattggct
     5521 gaccaagtat ctgccatatt tgtaccagtc gtcatgggct tggctctctt gtccggtctg
     5581 gcctggtact tcttgggtca agaatcatgg attttttcat taagcattat catcgccgtc
     5641 ttggtcatcg cctgcccttg tgctctgggc ttagcaacgc cgactgccat catggttggt
     5701 actggaaaag gtgcagaaaa tggccttctg ttcaagtctg gtcaagctat tgaaacccta
     5761 caaggtgtga acaccattgt cttcgacaag actgggacca ttactgaggg caaaccccag
     5821 gtgacagacg tccacctctt gtctactaaa aatcgtgagc aggtcctcca gctggccgca
     5881 agtagcgagc aattttccga gcatcccttg gctcaggctc tcctgcaagc agctcagaca
     5941 gaaaagattg atctcttgcc cgccacagat tttcaggcac tttctggtcg tggtctttcg
     6001 gtgataatag cagagcagac catctatctg ggaaatgaac ggttgatgcg ggaacaggga
     6061 attgatgttt ccaaaggacg tgcagttgcg gaggcatttg cccagcaagc caagacgcct
     6121 gttttcctag ccagccagca agaagtacta gcagtcattg ccattgctga taaaataaaa
     6181 gagaccagcc gtcaggctgt ccaggctctg caaaccatag gactagaggt tgtcatgctg
     6241 acaggagata atgaaaaaac tgccaaagcc attgccaagg aagtcggcat tgaacaggtg
     6301 atcagtcagg tcctaccaga tgacaaggct aaccaagtca agcacttaca agaacagggc
     6361 aagacagtcg ctatggtggg ggatggcatc aacgatgccc cagctctagc tcaagcccat
     6421 gtgggtctag ccattggttc agggactgat attgccattg agtctgccga cattgtcctc
     6481 atgcatagtg atattttgga tgtggttaag gctgtcaaac tcagccaggc aaccatgcgg
     6541 accatcaaac aaaatctctt ctgggccttt gcttacaatg tgatcggtat tccagttgct
     6601 atgggtctgt tacatgtatt tggtggacct ctgctcaatc ctatgtttgc aggtgcagcc
     6661 atggccctca gctcagtgtc agtcgtcttg aacgctctgc gattgaaaac ctacaaacta
     6721 tagcaaaaat accagtcaaa aaactggtat ttttttacat aaacgcttac aatgtatata
     6781 ttaagtgcaa gggagatgtt tatgacaacc tttattggaa aaccggtgac cttggtaggt
     6841 ccgcagttac gagtgggaga tgtagcccct gattttgtcc tcatggccaa tgacttgagc
     6901 ttgaaaagcc tgaaagactt tggcaagcag actaaggtca tcagtgttgt gccttctatt
     6961 gatacaggga tttgcgatac ccaaactcgt cgcttcaatc aagaattggc tgaccgtgac
     7021 aatacggttg ttattacggt ttcagcagac ctcccctttg cccaaaaacg ctggtgtggc
     7081 gctgcaggtt tggaagatgc catcaccctg tctgattact atgaccatgc ctttggtaaa
     7141 tcctacggtg tgctcatgcg ggagtggaat ttgctggcgc gtgcggtctt tgtcctcaat
     7201 gccgacaata aaatcaccta cgtagaatac ttggataatg tcaacgagca tccagactat
     7261 gatgcggctt tggaggctgt taaataaaga tataacggtg ccggaacagg catcgttttt
     7321 tgatggaata tttttgtcta atttgatata ctaaatttat caaaaacaag gagggtcttt
     7381 tatggaaaag acacagatta ttcaagatgt tttggccctc attcaagact tgaatcgggc
     7441 ctttcaagca gataaagtag gaacagctga tgaacaacgg ttccaacata atctgacaga
     7501 gacgacacgc atattgtcgg aggccgagtc tgttaccaat acagaactga ttgcgattga
     7561 gaaattttat cgttcgacca gttttttggt tggactgggc gacctgcgat tgagtgaaac
     7621 cagcaggcag gcttggcggg catttgaccg atattactac gaaacgatca gagaagaact
     7681 caaactctat ggcggctctg ctattgccca agtgtaaaag atgaaggaga gggtgaaaac
     7741 cctcttttgt gctataataa gtagtaagaa tacagttgtt aggaagagaa gaagcgaggt
     7801 gtatcatgtc ctatatccaa gtaaagaatt cgtcaaaata ctaccaaatg ggggatgcga
     7861 ccattgtggc caatgatggt gtgtcctttg agattgagca gggtgagctg gtcatcattc
     7921 tgggttcatc tggtgcgggc aaatccactc tgctcaatat cttaggtggc atggatagca
     7981 acgatgaggg tgaggtttgg attgacggtg tggatattgc caagctttca agtcatgaat
     8041 tgaccaatta tcgtagagat gatgtaggtt ttgtatttca attttataac ttggttgcca
     8101 atctgaccgc caaggaaaat gtggaactgg cagcagaaat cgtcaaggat gccttggatg
     8161 ccgaggaagt cttggaacag gtcggactcg gtcaccgaat caataatttc cctgctcagc
     8221 tttcaggcgg tgaacaacaa cgtgtggcca ttgcccgtgc ggttgcaaaa aagcctaaaa
     8281 ttttgctttg cgatgaacca actggcgctc tggactacca aacaggtaag caggtcttac
     8341 aaatcctaca agatatgtcc cgcacacaag ggacaacggt gattatcgtg acccacaata
     8401 gctctctggc tcctattgca gatagggtca ttcggatgcg ggacgcccgt gtgcactctg
     8461 ttgagttaca cgcagaacca caggatattg caagcctaga atattagtgg gtgaaactat
     8521 gaaaaagaaa atctactgga aggatatgag acaatctctg ctttcttcca aggggcgttt
     8581 tttgtccata tttagcctga tgatgctagg agctctagct ttgacaggtc tgaaagtaac
     8641 agctcccaat atggaaaaga cggcccaagc ctatatagcc agtcatcgaa cgatggattt
     8701 ggcagtaatt tcaggtctgg gacttagtca agctgacctt gacgaattag aaacgataga
     8761 aggtgctact cttgaagcgg gctactttaa agatgtggtt actaatgaag gtcagactgc
     8821 aattcggctg ttttcagctc cccagaccct atcgacctat aagctagtag aaggggaaat
     8881 gcccagtcaa aaggggcaaa tagccctatc agcttctttc aaaaatcgtt acaaattgga
     8941 cgatactgtt caagtgacgg agtctgataa ggatggaaaa atcttgacac agacaagttt
     9001 tactcttgtg ggctttgtcg catcagcaga aatttgggac aatgaaacca tgggcatggc
     9061 tgcaagtggt gatgggcagt taggtggcta tggccttgtt agtcaggata ccttcaaatc
     9121 agaagtttac actattgccc gtattcgcta tgatgatttg gttgatttac catattacag
     9181 tcaggcctat caagacaggt tggaccagca ccaagaagac gtagaaaagt tattggctaa
     9241 caatgatgaa caacgattgg cagctattca gtcagatgga cagacagata tttcaaaagg
     9301 ggaagaggaa attgctcagg ctcaatctca gcttgaacag gcagagtcag aactggaaac
     9361 aggggaggag caattagcga caggtcgtag agagtttgcg cgtggtaggg ctaaggttgt
     9421 ccaaacggaa gctgaattac gagctgccca agcccaacta ttaaaaaata agtttgaatt
     9481 ggaagaaagt aaaaaggaat tggacgggcg taaggctcaa ttagaacaga ctgcttcgtt
     9541 tctagacggc tatcagatgg aattagaaac gtcagcccag cagttagaag aggccaagca
     9601 agaattggat tcccaaaatg cccaactgag tcagaccgca tctcagattt ccacagggcg
     9661 agctagttgg tttcaagctc agcaagagtt agaccttgaa attgccaatc acttgcaaga
     9721 aggccaaacc ctctcagact atcctgactt gttggctaga caggaaggtt tggatgttga
     9781 gaaaagccga ttagaccaaa tggaatctgc acatgagcag gccaaccaag cctatttaca
     9841 aggttatgat tactatcaaa ccaaacaaaa tgaatacaat agcaatctag cccagtacca
     9901 aacttggaat caagaatatc aggcaggttt ggcccgttat caagcaggtt tgagtcagta
     9961 tgaacaaggc attgcagcct acaataaagg agtagaagac tatgaatggg gactaagtca
    10021 gttagagtct tcaaatcaac tgctccgtca ggaagaattc cgtttggagg aggctgataa
    10081 agagttaagt caagctcaat cccaattttc tgagaagaaa gccacggccg atcaagaaat
    10141 tagccaagct caaaccgaga ttgctcaggc aaaatccgac ttaagcaagc tggaaaaagc
    10201 gccctatcag gtctatactc gatcaagcct accaggtgga gatggctata ctacctatag
    10261 caatgcgact aggtctattg ctgcagtggg caatgtcttc ccagttgttc tctaccttgt
    10321 cgcagctcta gtgactttta ccaccatggc ccgttttgtc gatgaagagc gaacacagtc
    10381 aggtctcttc aaggcccttg gctatacgaa tagacagatt atggctaagt tcattctcta
    10441 tggtttgacg gcaggtctgg taggaacaat agtcggtata atagcaggca atctcctcct
    10501 gtctccactt atttccaaca ttattacgca gacaaccgtg attggaccag ctaaacttca
    10561 tttttatccc ctttggacag gtttagcctt gctcctgtct ttggcttcct cggtcctgcc
    10621 agcttacttg gtggctcgtc gggagctgac agaaaaacct gctcagctac ttttacctaa
    10681 gccacctgtt acaggctcca gcatttggct tgaaaaatgg ccggctatct ggtcccgcct
    10741 gagcttcacc cataaggtga cagcccgcaa tatcttccgc tacaagcttc gtatgcttat
    10801 gaccatcttt ggagtagcag ggaccgtcgc ccttcttttt ggaggactgg gtatccgttc
    10861 ctccatctca ggagttgtcc aacgacagtt tggggagctg atccattatg atatgttggt
    10921 ggtggaaaac agcagagcta ctgaggaaga gttggataag ttaacacatt ttcttcagtc
    10981 agatcaggtt cgccaatcct tgccagtggc ttttgaacag ctcaatcaaa cggtggaaga
    11041 agacggtcag agaaagaatt tatcgattag tctctacatt tcagaccgtc gggattttgg
    11101 aaatcaagtc agtctggaaa gttcgacagg tcagcctatt aaactgagtg acagggggat
    11161 tgtcctcaca gaaaaattgg cgcaaatcta cggggtctca gttggtgata agttatcact
    11221 gaccttggaa gataaggaag tttcagtcag ggtagaggct gtggctgata tgtacgcagg
    11281 gcattttatc tatatgacag atagctacta cgaacaagtg accggcaagc agaagactgc
    11341 caatgcctat ttggttcagt tgaaagacag tcagttgggg catattcaga ctcttgcaag
    11401 tcaactccta gcgatgccag cagtcagaag tttggttcaa aatacttctc ttatagatat
    11461 gcttaccacg attgcaggct cgcttcagac catcatgacc attctagtca tcctatccat
    11521 cttgcttggc ttggttattc tttacaacct tacaattatc aatatgtctg aacggattcg
    11581 tgaattatcc accatcaagg tactgggctt ccacaataaa gaggtgacca tgtacatcta
    11641 tcgcgaaacc attgtccttt cgctgattgg catgttggtt ggactggttg gtggtattta
    11701 tctccacaag ctccttcttg ccatgattgg ttcggacagt atccgcttca atccatctgt
    11761 cggactagaa gtctatctca ttcctatctt agccattagt ggaattttgg ctgttcttgg
    11821 ttggtacgtc aatcaccatc tgagaaaggt ggatatgctg gaagccttga agtcagttga
    11881 ttaaaacagt ctgggaatag actgttttaa cccgagcctt gaaatcggag agcgaggcac
    11941 agtcttggtt tggaaggaat tttaaaaaga gaatgacagt cttgcgattc aaaagaggct
    12001 gagcaaaaag cccaggacca ctactcagag ttcgtgtcaa catctcagcg cagtggttga
    12061 ttggcagatt tgttcgtgtt ttgcactcca aatctggcca ttacgactga tgcgaacaaa
    12121 gttcgctcta tttccaacct caaaaggttc actgaacctt tttgtaacga accttgttcg
    12181 ctctatctcc aacctccaac agtcactact ctgactgttg gagctatgcg ggggtgggag
    12241 tgaaacagtc tgggaataga ctgtttcagc tcaacaactg gaaataagga cttgttgacg
    12301 aactcttttt gacttagtcg agttcttata cgaaaactca aaagaatgca aaaactccct
    12361 ccctatgata taatcaaagc gaaaaatttt ttatgttagg ctactagctc gtccctagta
    12421 gtctttttct gtgctaaaaa ttcaggatac gttatctgct cttttaagag gatataagct
    12481 atttttaata attgatgtgc gagtgcaatt gttgcttttt gtgaaccacg ccgactttga
    12541 atctgataaa atcggtctgc taggggacta cctttttgtt ttttgatagc gaaagcggct
    12601 tggcataaac atttcttcaa atatgaattt ccgtgtcgaa tcttggtact tcgtttttta
    12661 ccagcactct cattattacc tggacaaagt cctgcccaag aagctagatg tccagcagtt
    12721 ggaaattgac tcatgtcaac accaacctca gaaatgataa cagaagctgt aatgacatca
    12781 atgcctggga tggaatccaa tatttctaca tggttttcat attgtgatag atagacattc
    12841 attcgctctt ccaacaactc aatctgcttc tgataaaaat cataaatctc caaggactgc
    12901 tttaacataa agcggtgatg gtcagaaaaa tagccatcca aggcttccag aagctgcggc
    12961 actttcttct tcaagctggt ataaacagat tgatggacaa tgcgaggtgt aataggcgtc
    13021 ccatcaacca gtagctgaag gagattgcga ccagatagcc ccataatatc ttcaatatag
    13081 gttgttagct tgataccgcc tgactgaaga attttatgga tacggttggt ttcgcgattg
    13141 cgactttcca cataatgttt tcgctgtctg gtcaattccc tcaattcttg aatagcttca
    13201 tcggggacga aactccgagg caatagacca atccgtgtta atttggcaat ccagtgagca
    13261 tccttcttgt cggttttctg acctggaata gccttcatgt gggctggttg agcgagtatc
    13321 aacttgaagt catcacatag agcatgccag acaggtcgcc aataaacacc tgtgctttcc
    13381 ataccaacag cttccacatg aaattgactg agaaaatcgt ggcaagcacg taggccttta
    13441 gtcgttgtat caaatgtagc catctcacgc tttggacgag ttgaggtgag tggtccatgt
    13501 aggatacaga cgacaatatt ggcttgatgg acatcaatac ctgcacaaga ttgatagaga
    13561 acatccatga taattctctc cttctaaaaa ttagagagct tatctaccga attttagtcg
    13621 tatttttata ctcatgccta tcgcatattt tggggtgctc gtcagtagag tgggttagtt
    13681 tttcccgcga tgactaacat cagtaactcg tcaaccacaa agccctcact aagattatac
    13741 acctagtgag ggctttatgt tcgttttcat tattctgtgg gtgagggcgg agccatcatg
    13801 gatgtctttc ccactcccaa ctcttaaaca aaaaattcta cccaagctcc aacaagcaag
    13861 aatgcgatgc agagatagat ttgccaattt gcttttaagg tccattcttt agaccaaaag
    13921 gcactacggg cagtaccgac agtagcaaag agcaagagcc caagccagag gctaggtccc
    13981 ttatttagcc attccccgat acttcctaga aacaacatga tcatcagata aaaattcaaa
    14041 ctccgataat attctttatt aaattcctta aacattgaaa atcctcacag tacaaagaag
    14101 gaaatgatta tccaactagc aatcaatcca atcgtcagat aaatttgcca tgttttttaa
    14161 tccagctacg tgacttaaag aaagctaggt aaccagcata aagcccgagt ccaagcttga
    14221 ctagatggat aaaccaaaac ggtccgttta cagctgcata aatcacttgt aggatacaaa
    14281 ggatggagaa ataaaattcc caagttcgat aaaatgcttt attgaatttc ttagacatag
    14341 taaactcctt tctacttacc caaaataaat ctcagataaa caatcactac aatcaatctg
    14401 atatagaaga tgtagcccat gcgagtgagc tccttttctt ccttgaagaa gaatacccga
    14461 atggcattga taaaaataat cagacaggcc aataggctgt accatgcagg agtttgggaa
    14521 gggtctatca aaatgtctga aagaaaaaaa caagtccaaa aaatcataga atagaaggca
    14581 ctataccgat agaaatgctt gttaaactgg aatttcatga t
//
LOCUS       DASGBY010000046        14580 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.046, whole genome shotgun sequence.
ACCESSION   DASGBY010000046 DASGBY010000000
VERSION     DASGBY010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14580
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.046"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(19..771)
                     /locus_tag="U1396_001022"
     CDS             complement(19..771)
                     /locus_tag="U1396_001022"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEM5342219.1"
                     /translation="MSRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAP
                     AVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDY
                     FHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTAEQV
                     ASLVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPS
                     NVAEYTACPDVDGALVGGASLEAESFLALLNF"
     gene            complement(946..2142)
                     /gene="tuf"
                     /locus_tag="U1396_001023"
     CDS             complement(946..2142)
                     /gene="tuf"
                     /locus_tag="U1396_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014335040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM5342220.1"
                     /translation="MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSV
                     NQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQM
                     DGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDL
                     LSEYDFPGDDLPVIQGSALKALEGDSKYEDIVMELMNTVDEYIPEPERDTDKPLLLPV
                     EDVFSITGRGTVASGRIDRGTVRVNDEIEIVGLQEEKSKAVVTGVEMFRKQLDEGLAG
                     DNVGVLLRGVQRDEIERGQVISKPGSINPHTKFKGEVYILTKEEGGRHTPFFDNYRPQ
                     FYFRTTDVTGSIKLPEGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGM
                     VTEIEA"
     gene            complement(2498..3469)
                     /locus_tag="U1396_001024"
     CDS             complement(2498..3469)
                     /locus_tag="U1396_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti sigma factor C-terminal domain-containing
                     protein"
                     /protein_id="HEM5342221.1"
                     /translation="MTMKTFEEVTKKSKRKNLWKTIGLSSLIGFILMLIGVQTVKIIV
                     GAREGRENWKQIILMEISYPNIKHDGIKIQSTSYVSGKLYCNLYKDLAGVPMAFGQHE
                     IYYDLFDRHYDFAQHIPGNTFKYLYDFTTNTKVPVFYNRKKSVWSAQDIANELHYLKD
                     MSGQLVEVAISFDKKYSLAEIKQMIPSNLKQNWYWIGTEGKQNTHYYRPEQLLGLDPE
                     DIQLVFSDMPGDYMTGMDFMKEFLESGDQERAQYLDIPVDDLQAFVDKFGGTDFTKQE
                     EIDQLEFAGIILTGKAEDFAQLEGKDWIYSSSIGASIPIQPYYQLHH"
     gene            complement(3450..3953)
                     /locus_tag="U1396_001025"
     CDS             complement(3450..3953)
                     /locus_tag="U1396_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5342222.1"
                     /translation="MSIKLDQYEKEIIGIAEEISYYLQKSGAGPADSQDIAQDVLVKL
                     LESDIVLPFEKLRAWLYRSAVRAYIDKYRRDKRYHEILQKEFFRREDLLVYDQEGYEE
                     LYQAVADLPEKYQQVIDLYYFQDMSVKEVAHILGTGQSWVKIILYRGRKQLRKILEER
                     GYDYEDF"
     gene            complement(4068..6764)
                     /gene="ppc"
                     /locus_tag="U1396_001026"
     CDS             complement(4068..6764)
                     /gene="ppc"
                     /locus_tag="U1396_001026"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEM5342223.1"
                     /translation="MAIQKLENYNNKEAIREEVTILTSILEKVAAQMMPAETFAKIVE
                     LSQLSRQDDYRALIAIISQLNNDELAVISRYFAVLPLLINISEDVDLAYEINHQNNID
                     QDYLGKISTTIDMVSKQENAAEILEKLNVVPVLTAHPTQVQRQSMLDLTKHIHELLRR
                     YRDVKLGLLNKNKWEDELRCYIEIIMQTDMIREKKLKVTNEITNVMEYYNSSFIKAVT
                     KLQREYKRLAAEKGIVLNNPRPITMGMWIGGDRDGNPFVTAETLKLSALTQCEVIMNY
                     YDDQLYKLYRNFSLSTSIVNVSTAVKMLADLSEDSSVYRENEPYRRAFHYIQMKLANT
                     RDYLVHNKPSDVRYSNVAEFKADLLAIKQSLVENKSMALLKGDFTELLEAVEAFGFYL
                     ASIDMRQDSSIHEASVAELLASARIVEDYSSLSEEAKCHVLLKQLETDPRILSATHMP
                     KSEQLEKELAIFAAARELKDKLGEEIIKQHIISHSESVSDLLELAVLLKEVGLVDVDK
                     ARVQIVPLFETIEDLDNAPDTMRQYLQLDLAKRWIAGNKYYQEIMLGYSDSNKDGGYL
                     SSGWTLYKAQNELTQIGQDYGVNITFFHGRGGTVGRGGGPSYDAITSQPFGSIKDRLR
                     LTEQGEVIGNKYGNKDAAYYNLEMLVSATLDRMVTQMITDPNEIDGYRETMDEIVSDS
                     YRIYRDLVFNNPHFYDYFFAASPIREVSSLNIGSRPAARKTITEIGGLRAIPWVFSWS
                     QNRVMLPGWYGVGSSFKRFIDKHPDNLSKLQKMYESWPFFRSLLSNVDMVLSKSNMNI
                     AFEYAKMCESEEVRNIFHVILDEWQLTKEIILSIEQNDELLAELPFLKASLDYRMPYF
                     NVLNYIQIELIHRLRRGELSKEQENLIHITINGVATGLRNSG"
     gene            complement(6785..7999)
                     /locus_tag="U1396_001027"
     CDS             complement(6785..7999)
                     /locus_tag="U1396_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM5342224.1"
                     /translation="MKIDKRQLLNYSILIPYLILSVIGLVMVYSTTSATQIINGGNPF
                     RTVINQAGFWIVSLVAIYTIYRMKLSFLRKKAVIYSVILVEVFLLAISRLFPPINGAH
                     GWIPLPIAGTLQPAEYLKLIIIWYLAHEFAKQQADIRTYDYVSLIKGSWIPKEFTDWR
                     VVSLLLLGLVATLPDLGNATIIVLIMVVMISVSGIAYRWFSTAVLGIVAASTVILGTI
                     RILGVETVEKIPLFGYIARRFAAYFDPFGNATNSGLQLTHSYYAMSNGGWLGRGLGNS
                     IEKKGHLPEAHTDFAFSIVIEELGFVGASLILALLFFLIIRIIIVGVRARSPFNAMMA
                     LGMAGMLLIQTFVNIGGISGIIPATGVTFPFLSQGGSSLLIISIGIGFVLNIDASEKR
                     RLIEEEIERTLI"
     gene            complement(8136..8501)
                     /locus_tag="U1396_001028"
     CDS             complement(8136..8501)
                     /locus_tag="U1396_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4430 domain-containing protein"
                     /protein_id="HEM5342225.1"
                     /translation="MKKISIMLMVVFSLFLAACTNTTEKQSESAIEVTLQITTKDKAN
                     HQEVTAEEGDSVMDVLKEHHDIVEDNGLITEIDGVSQDASTNTYWMYKVNGQMADKGA
                     KDLTVANGDEIEFYLETFE"
     gene            complement(8498..9001)
                     /locus_tag="U1396_001029"
     CDS             complement(8498..9001)
                     /locus_tag="U1396_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342226.1"
                     /translation="MHDKSEKVRRVSQLVVLSSLTIVLRVVFGPFPNIKPLTAIFLIV
                     LSYFSLLESWILMILVMVGSGLLFGFGTVVLWQVLSFAFIQFIWWLAIGPFIKKENIP
                     LWLQSLLAGILVFLYGLTISFLSATQFRTSPIVFWLNGLVFDSLHAASTVLFYPIIDY
                     IFRRFYK"
     gene            9114..9968
                     /locus_tag="U1396_001030"
     CDS             9114..9968
                     /locus_tag="U1396_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HEM5342227.1"
                     /translation="MRKKLNPMIVVGFFLSFFALIFITGVTGNTVNKTEVANEPAVTQ
                     SNTSTSSKTTNSSSSYYIANALEMKPIVDVSAWQRPSEIDYDTLSKNISGAIVRIQSG
                     SHTKNENTATDKNGLDKSFDTHIKEFQARNIPVAVYAYVTGNSIENMREEARSFYKAA
                     NKYKPTFYWLDVEEYTMDDMNAGVEAFRKELETLGAKNIGIYVGTYFMEDHSINVDKF
                     DAIWIPTYGDDSGYYNAAPNTDLNYDLHQYTSRGYVNGFEHHLDLNIITTLKDPNEVY
                     QKLFTTPE"
     regulatory      9992..10087
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            10146..10694
                     /gene="thiT"
                     /locus_tag="U1396_001031"
     CDS             10146..10694
                     /gene="thiT"
                     /locus_tag="U1396_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HEM5342228.1"
                     /translation="MSTSKLPILAEVAIFSAIALVFDKIPLFTMPQGGSVSLVMLPIL
                     LLALRHGLGVGVLTGGIVGTIQLFYGGYFLNVFQVFLDYALSYAGIGLAGLVAPTLSK
                     QKDLKNATLIITLASFLGGSIRLLATFLSGIIFYADYAPDGMPVWFYSFTYNISYILP
                     STAIASILLILLYRARPGFYNL"
     gene            10797..11639
                     /locus_tag="U1396_001032"
     CDS             10797..11639
                     /locus_tag="U1396_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HEM5342229.1"
                     /translation="MASWISRIIKGMIIALGFILPGVSGGVLAAILGIYERLIGFLAN
                     IRKDFKENFLYFVPVGIGGILGIALFSFPVEFLLQHFQVPVLWAFAGAIVGTIPSLLK
                     ESTQKSKRDSIDLAWLIGTFIISGLLLYNLSDLVGTLPATFASFVLAGALIALGVLVP
                     GLSPSNLLLILGIYTPMLNGFKSLDLFGTFLPIAIGGVLAMVAFSKAMDHALKVYHSR
                     VYHFIIGIVSSSTLLILIPQASNKESISYAGANFVTWIAAIVLFILGAWLGLWMSKLE
                     EKYK"
     gene            11639..12121
                     /locus_tag="U1396_001033"
     CDS             11639..12121
                     /locus_tag="U1396_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA deacylase"
                     /protein_id="HEM5342230.1"
                     /translation="MAKKVKIKKTLVDQILDKAKINHDSLVLNAFEGQLPPGIEEHEI
                     YKTLALTGDKTGPIIGIVPITEHLSEKKLAKISGNKKVSMIPQKDLEKTTGYIHGANN
                     PVGIRQKHNFPIYIDQSALELGHLIVSAGEIGRSIRIDSQVLADFVKADFADLIEGRD
                     "
     gene            12124..12750
                     /locus_tag="U1396_001034"
     CDS             12124..12750
                     /locus_tag="U1396_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5342231.1"
                     /translation="MKIYFVRHGKTEWNLEGRFQGYSGDSALLPESYQDLEKLGKYLA
                     EIPFDAIYSSDLQRAHSTAVEIAKANHHCQTVLTTQQLREWNFGTLEGSKMAIFRAIY
                     PKQAWALKHNLALFNNDLFEAESVRQVTQRMVDFVQSLKGQDMETVLIVSHGAFLTAS
                     IHRLLGFPPAQLRHRGGLDNASVTILETSDFENFTELAWNDTSYKAKQ"
     gene            12853..14343
                     /gene="lysS"
                     /locus_tag="U1396_001035"
     CDS             12853..14343
                     /gene="lysS"
                     /locus_tag="U1396_001035"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003055423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEM5342232.1"
                     /translation="MSTEHFEELNDQQIVRREKMTALAEQGIDPFGKRFERSANSAEL
                     KAQYEDKSKEDLEELGQTAIIAGRIMTKRGKGKAGFAHIQDREGQIQIYVRKDDVGEE
                     NYEIFKKADLGDFIGVEGDVFKTNVGELSIHARKLTHLSKALRPLPEKFHGLTDIETR
                     YRKRYLDLITNRESFDRFVTRSKIISEIRRYLDGLGFLEVETPVLHNEAGGAAARPFI
                     THHNAQNIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQ
                     AYADYLDIMDLTEGIIQHTAKAVVGDGPVTYQGTEIAIHEPFKRIHMVDAIKEQTGVD
                     FWQEMSFEEAKALAAEHKVPVEKHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVS
                     PLAKKNDEDPRFTDRFELFIMTKEYGNAFTELNDPIDQLERFEAQAKAKELGDDEATG
                     VDYDYIEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK"
BASE COUNT         4351 a         3177 c         2735 g         4317 t
ORIGIN      
        1 atccgatgct ttttgttatt agaagttcaa caaagccaag aagctttctg cttcaagtga
       61 tgcaccacca acaagcgcac cgtcaacgtc tggacatgcc gtgtattcag caacgtttga
      121 tgggtttaca gaaccaccgt attgaacgcg aactttgtct gcaacttctt gaccgaaatc
      181 agcagcaaca acgtcacgga cagctttaca catgttttgt gcatcatctt tagtagctga
      241 tttacctgta ccgattgccc agattggctc ataagcaata acaagtgatg ctacttgttc
      301 agcagtcaag tctttcaaag ctgcagaaac ttgtgcacct acaaattcta ctgctttacc
      361 agcttcgtaa gtttcaagtg actcaccaca acagatgatt ggagtcaaac cgttacggaa
      421 gattgcatga gcttttttat taatatcttc atcagtttcg tggaagtaat cacgacgctc
      481 tgagtgaccg ataacaacat agttaacacc catttcagcc aatacttttg gagatgtttc
      541 accagtgaag gcaccagcat cttcaaagta gcagttttga gcagcaactt tcaattcaga
      601 atctttagcg aaccacaaga gagcgttcaa atctacagct ggagctgcga tagctgcttc
      661 aattttgtcg cctgcaggca attttcctgc aattgcctca acgaaagctt gtgcttcttg
      721 agggttttta ttcattttcc agttaccggc aatgattggt ttacgtgaca tttcacttac
      781 ctcttctata tttattgtac aaggtacatt atagcataaa cttagctaag attaaagaat
      841 ttctgtgcat tttatgaata cttacagaaa aactctctac ccgaaagtag agagttacaa
      901 ttaagttgtc tgactataat tgttatttct gggaactcaa tcgaattaag cttcgatttc
      961 tgtaaccata cctgaaccaa cagtacgtcc accttcacgg atagagaaag tagtaccttg
     1021 ttcaacggcg attgggtgga tcaattcaac gtcgatagta acgttatcac caggcattac
     1081 catttcagta ccttctggca atttgattga accagttacg tcagttgtac ggaagtagaa
     1141 ctgtggacgg tagttgtcga agaatggagt gtgacgtcca ccttcttctt tagtaaggat
     1201 gtaaacttca cctttgaatt tagtgtgtgg gttgatagaa cctggtttag agataacttg
     1261 accacgttcg atttcatcac gttgtacacc acgaagaagc acaccaacgt tatcgccggc
     1321 aagaccttcg tcaagttgtt tacggaacat ttcaacacca gtaacaactg ctttagattt
     1381 ttcttcttga agaccaacga tttcgatttc gtcgttgaca cgaacagtac cacggtcgat
     1441 acgtcctgaa gctacagtac cacgaccagt gattgagaat acgtcctcga ctggaagcaa
     1501 caatggtttg tcagtgtcgc gttctggttc tggaatgtac tcatcaacag tgttcatcaa
     1561 ttccataacg atgtcttcgt acttagagtc accttcaaga gctttaagag ctgaaccttg
     1621 gataactgga agatcatcac ctgggaaatc gtattctgaa agaaggtcac ggatttccat
     1681 ttcaaccaac tcaagcaatt cttcatcgtc aaccaagtca actttgttca tgaagacgat
     1741 aaggtgttta acaccaacct gacgtgaaag aaggatgtgc tcacgagttt gtggcattgg
     1801 accgtcagtt gaagctacta caaggatcgc accgtccatc tgagcagcac cagtgatcat
     1861 gtttttaacg tagtccgcgt gtcctggagc gtcgatgtga gcatagtgac gtttttcagt
     1921 ttcgtactca acgtgtgcag tgttgatagt gataccgcgc tcgcgctctt ctggagcagc
     1981 atcgatagac gcatagtctt taggttggtt aactgatgaa ggcaagcgac gtgccaatac
     2041 agttgtgata gctgctgtca aagtagtttt accgtggtca acgtgtccaa ttgtaccaat
     2101 gttaacgtgt ggtttactac gatcgtattt ttcttttgcc attttggtaa aagcctccaa
     2161 taaaatatat tttatagata gacagtaggc aatacagtct aactttacct tactattcta
     2221 tcaaattgta gcagaattgc aagcattttc tatcgttttt tattttatcc attttctgca
     2281 agggctatta gcttcgctta taactttttt tatcatccca ttttaaccta ttactcaact
     2341 aaaaacacct cactgccata ggaatattga tgttaccata gctacaaggt gccacaaata
     2401 cgagactact gcgacagacc tttctccatt cagtcatcct acgactccct gacaagcctc
     2461 ttgctatagg tattgaaaat atattgacta ttttcactta atgatgcagt tgataataag
     2521 gctgaatagg aatggacgcg ccaatactag aagaataaat ccagtccttg ccttccaact
     2581 gagcaaagtc ttctgctttt cctgttagga taatgcctgc gaactccaac tgatcaatct
     2641 cttcttgttt ggtaaagtca gtgccaccaa acttatcgac aaaggcctgc aagtcatcca
     2701 caggtatgtc cagatactgt gctcgctcct gatctcccga ttctaagaac tctttcataa
     2761 agtccatacc tgtcatatag tctccaggca tatccgaaaa gactagttga atatcctctg
     2821 gatctaaccc caaaagctgc tctggacgat agtaatgggt attctgcttc ccttctgtcc
     2881 ctatccaata ccaattttgc ttgagattgc tgggaatcat ttgcttgatt tctgccaaac
     2941 tgtacttctt atcaaaggaa atagccactt ctactagctg cccactcatg tctttaagat
     3001 aatgcaattc attggcaatg tcttgagcac tccaaacaga cttttttcta ttgtaaaaaa
     3061 caggtacctt ggtattggtt gtgaaatcat atagatattt gaaggtattc ccaggtatat
     3121 gctgagcaaa atcatagtga cgatcaaaca ggtcatagta aatttcgtgc tgaccaaaag
     3181 ccataggaac accagctaga tccttatata aattgcagta aagtttccca gaaacataac
     3241 tcgtgctttg gattttaata ccgtcatgtt ttatatttgg ataagagatt tccatcaaaa
     3301 taatttgttt ccaattctca cgaccttctc gtgcaccgac gatgattttt actgtttgaa
     3361 cgccaataag cattaagatg aagccgatga gcgatgatag ccctattgtc ttccataaat
     3421 ttttccgctt actctttttt gtcacctctt caaaagtctt catagtcata tcctctctct
     3481 tctagtattt tcctcaactg cttgcgtccg cggtaaagga taattttcac ccaactttga
     3541 ccagtcccta agatatgggc aacttctttg acactcatat cttgaaaata atagaggtca
     3601 atcacttgct ggtatttttc tggcaggtct gcaactgctt gatagagttc ctcataacct
     3661 tcttggtcat agaccaaaag gtcttctctt ctaaaaaact ccttttgtaa aatttcatgg
     3721 tagcgcttgt ctcgcctgta tttgtcaatg taagcccgaa ctgcagatcg gtaaagccaa
     3781 gctcttagtt tttcgaaagg aaggacaata tcagattcaa gcaatttgac tagaacatct
     3841 tgggcaatat cctgactgtc agctgggccg gctcctgatt tttgcaaata gtaggaaatc
     3901 tcctctgcaa taccaataat ttctttttca tattgatcta gtttgatact tatctcctcc
     3961 tttcactgat aaaacgaata aggggtgatt tggttacgtt ttcttataat tattatatat
     4021 ttttagaata gaaaaaaaca acctccgaag aagttgtttt atgcctatta acctgagttg
     4081 cgcaaacctg tcgccacacc attgatggta atatgaatga gattctcttg ttctttgctc
     4141 aattctccac gacgaagacg atgaattaat tcaatctgaa tatagttgag cacattgaaa
     4201 taaggcatgc gatagtcaag actagctttt agaaacggta gttctgctaa aagctcatca
     4261 ttttgctcga ttgacaaaat aatttctttg gtcaactgcc attcatctaa aatgacatgg
     4321 aagatatttc gtacctcttc gctttcacac attttagcat attcaaatgc gatattcata
     4381 ttggatttag acaataccat atccacgttt gatagaagtg aacggaagaa tggccaagat
     4441 tcgtacattt tttgtaactt agacaaatta tcagggtgct tatcaataaa gcgtttgaaa
     4501 cttgaaccaa ctccatacca acctggcaac atgacacggt tttgtgacca agagaatacc
     4561 catggaatcg cacgcaaacc accgatttct gtgatggttt ttcgagccgc tggacgtgag
     4621 ccaatgttca gacttgatac ttcacgaatt ggactagcgg caaagaaata atcataaaaa
     4681 tgtggattat tgaacacaag atctctataa atacgatagc tatctgatac aatttcatcc
     4741 atggtttcgc gatagccatc gatttcattt ggatcggtaa tcatttgtgt gaccatacgg
     4801 tcaagcgttg cagataccag catttctaaa ttatagtagg ctgcgtcttt gttaccgtat
     4861 ttattaccta tcacttcgcc ttgttctgtc aaacgaagcc ggtccttgat ggaaccaaat
     4921 ggctgagatg taatcgcatc ataggaagga cccccaccac gaccaacagt accaccacga
     4981 ccgtggaaga aggtgatgtt tactccgtag tcttgaccaa tttgcgtcaa ttcattctgt
     5041 gctttgtaga gtgtccagcc ggaggatagg tagccaccat ccttgttgga atctgagtag
     5101 ccaagcatga tttcttggta gtatttattg cctgcaatcc aacgtttcgc taaatctaat
     5161 tgcagatatt gacgcatggt atcaggtgca ttatctaagt cctcgattgt ctcaaaaagt
     5221 ggaacaatct gaacacgggc cttatcgaca tctactagac caacttcttt taataggaca
     5281 gctaattcca gcaaatcaga aacactctcc gagtgtgaaa taatatgttg cttgatgatt
     5341 tcctcaccta gcttatcttt caattcacgc gcagcagcaa agatggccaa ttctttttct
     5401 aattgttctg actttggcat gtgcgttgca gaaagaatgc gtggatcagt ttccaactgt
     5461 ttcaaaagaa catggcattt agcttcctca gataaactgg agtagtcttc tacgatacgg
     5521 gcagaggcca atagctccgc aacacttgct tcatgaatag aagagtcttg gcgcatatcg
     5581 atactagcta ggtagaaacc aaacgcttca accgcttcaa gcaattctgt aaaatcacct
     5641 ttcaatagcg ccatagattt attttcaacc aaagattgtt tgatggctaa taagtcagct
     5701 ttaaactcgg ctacattact atagcgaaca tctgacggct tattgtgaac tagataatct
     5761 cttgtatttg caagtttcat ctgaatatag tgaaaagcac gacgataagg ctcattttca
     5821 cggtagacag aactatcttc agataaatcc gccagcatct taaccgctgt agatacattt
     5881 acaatggaag ttgagagtga aaaattccga tagagtttat agagttgatc atcgtaataa
     5941 ttcataatga cttcacactg agtcaaggcg gacagcttca aggtctctgc agtaacaaat
     6001 ggatttccat cacggtctcc cccaatccac atacccattg taattggacg aggattattt
     6061 aagacgattc ctttctcagc ggccaaacgt ttgtattccc gctgcaactt agtgacagcc
     6121 ttaataaagg aagaattata atactccata acgtttgtga tttcgttggt taccttcaac
     6181 ttcttctcac gaatcatatc cgtctgcatg ataatttcaa tgtaacaacg gagctcatct
     6241 tcccatttgt ttttattgag caagcccaat tttacatcgc gataacgacg aagcaactca
     6301 tgaatatgct tggttaaatc cagcatagac tggcgttgaa cctgagtagg atgggctgtc
     6361 aagactggaa caacattcaa cttttcaagg atttcagctg cattttcttg tttggaaacc
     6421 atatcaattg ttgttgaaat cttaccaaga taatcttgat caatattgtt ttgatggttg
     6481 atttcatagg ccaaatcaac atcttctgat atattaatca aaagtggcaa aacagcaaag
     6541 tatcgagaaa taactgctag ttcatcatta ttcaactgac tgataatagc aatcaatgcc
     6601 cgataatcat cctgacgaga caattgagat aattctacaa ttttagcaaa ggtctctgca
     6661 ggcatcattt gggctgctac tttttccaaa atagatgtta gaatcgttac ttcttcacgg
     6721 attgcttcct tgttgttata gttttctaat ttttgaatag ccatctccta cctctttcct
     6781 atctctaaat tagcgtacgc tctatttctt cttcaattaa tcgacgtttt tcactagcat
     6841 caatattcag aacaaaccct atcccgatgg aaataatcaa aagactcgat ccaccctgtg
     6901 acaagaaggg gaaagttacc cccgttgcag gaataattcc tgaaattcct ccgatattga
     6961 caaatgtttg aattagaagc atacctgcca ttccaagtgc catcatcgca ttaaatggac
     7021 tacgagcacg gacgcctaca ataataattc gaataatcaa aaagaacaat aaggctagaa
     7081 ttaaactagc tccgacaaaa ccgagttctt caatgacaat cgaaaacgca aagtcggtgt
     7141 gggcctctgg tagatgcccc tttttctcaa tcgaatttcc caagccacgt ccaagccatc
     7201 caccgttact catcgcatag taagaatgag tcaattgaag acctgagttg gtggcattac
     7261 caaatggatc aaaataggcc gcgaaacgac gagcaatata accaaagagt ggaatttttt
     7321 ccaccgtttc tacacccaaa atacgaatcg tccctagaat aactgttgag gcggccacaa
     7381 ttcccaaaac cgctgttgaa aaccagcgat aggcaatccc actcacacta atcatcacga
     7441 ccataatcag cacaataatc gtcgcatttc ccaagtctgg cagtgtcgca actagaccaa
     7501 ggaggagcag actgaccacc cgccaatctg taaactcttt cggaatccaa cttcctttaa
     7561 tcaacgatac atagtcataa gtccgaatat ccgcctgttg ttttgcaaac tcatgtgcca
     7621 gataccaaat gataattaat ttcaaatatt ctgccggctg caaggttcct gcgattggca
     7681 gaggaatcca gccatgagct ccgttaatcg gaggaaacaa ccgagaaata gctaacagaa
     7741 atacttctac caaaataacc gaatagataa cggctttctt gcgtaaaaaa cttaatttca
     7801 tacgataaat cgtatagatt gctaccaagc tgacaatcca gaatcctgcc tggttaatca
     7861 ctgttctaaa tggatttcca ccattaataa tttgcgtagc actggttgtc gaatagacca
     7921 tgaccaaccc aatcaccgat aagatgagat agggaatcag tatggaataa ttcaacaact
     7981 ggcgtttgtc aatcttcatt gcttatccaa ccttcttcga gtatagctct tattatagca
     8041 tactttgtat aaaaatactt atcactttct aagttgctct gcaaacattc ggaactgact
     8101 tttgtcgaca agaaaaaggc cgaagccttt catatctatt caaatgtttc aagataaaat
     8161 tcaatttcat ccccattcgc aactgtaagg tctttcgccc ctttatcagc catttggcca
     8221 ttaactttat acatccagta tgtattggta ctcgcatctt ggctaacacc atcaatttcc
     8281 gttatcaaac cattgtcttc tacaatgtca tgatgttctt taagcacatc catgacacta
     8341 tcaccttctt ccgcagtgac ttcctgatga ttcgctttgt ccttggttgt aatctgcaaa
     8401 gtgacttcga tagccgattc actctgtttc tcagtagtgt ttgtacaagc agccaagaag
     8461 agcgagaaga caaccatcaa cataatacta atttttttca tttataaaat ctcctaaaaa
     8521 tataatcaat aattggataa aacaaaactg ttgaagcagc gtgtaaacta tcaaagacta
     8581 gaccattaag ccagaagacg ataggggaag tcctaaactg tgtagcagat aaaaaactta
     8641 tcgttagccc atacaaaaag acaagaatcc ccgccagaag actctgtagc cacaagggaa
     8701 tgttctcttt tttgataaaa ggaccgattg ccaaccacca tataaattgg ataaaagcaa
     8761 aactaagaac ttgccacaaa acaactgtgc caaatccaaa tagcaagcca ctccctacca
     8821 tcactagtat catcaatatc cagctctcca gcaaactgaa ataggacaga acaatgagga
     8881 aaatagccgt gagaggtttt atattgggaa atggcccaaa aaccaccctt aaaacaatcg
     8941 tcaaagagga tagaacaact agctgactaa cacgtcttac tttttcactt ttgtcatgca
     9001 taccaattta gcctacctta ttccctttat tatgtcaagt tcagataatc ttttactatt
     9061 tcttgaatcg tatttttttg attttttcat gattttacgg tagaattgag gagatgagaa
     9121 agaaactaaa tccgatgatt gttgttggtt ttttcctatc cttctttgct cttattttca
     9181 tcactggggt gactggaaat actgtaaata agacggaggt agctaacgaa cccgcagtca
     9241 cacaatcaaa caccagtaca agttctaaaa caacaaattc tagctcaagt tattacattg
     9301 caaatgcgct cgaaatgaaa cctatcgtcg acgtttctgc ttggcagaga ccgtctgaaa
     9361 ttgactacga tacccttagc aaaaacattt ctggcgcaat cgttcgtatt caaagtggat
     9421 cacacactaa aaacgaaaat actgcgactg ataaaaatgg gttagataaa tcctttgata
     9481 cccatattaa agaattccaa gcaagaaata tacctgttgc tgtctatgcc tatgtcacgg
     9541 gaaatagtat tgagaacatg cgagaggaag ctcgaagctt ttataaggcc gcaaataaat
     9601 acaagccaac cttctattgg ttagacgttg aagaatatac catggatgat atgaatgctg
     9661 gagtggaggc ttttcgaaaa gagttagaaa ctctcggcgc taaaaacatt ggaatttacg
     9721 tcggaaccta tttcatggaa gaccacagca tcaatgtgga taaatttgac gccatttgga
     9781 ttcctacata cggtgatgat tctggctact acaatgccgc tccaaatact gacttgaact
     9841 acgatcttca ccaatatacc tcacgtggtt atgtaaacgg ctttgagcac cacctagatc
     9901 tcaacattat tactaccctg aaggatccta atgaagttta tcagaaacta tttacaacac
     9961 ccgaataaaa tgctacaatc tcactaatta catatacaca aaggagtgct tcggctgaga
    10021 tcgcaactgc gaaatcctcg aacctgatct agttaaaact agcgtaggaa ttgtgtgctt
    10081 tatagaatga tactatactc tgctataaac actcctttgt tgaccatcta caaaggagtc
    10141 tttttatgtc cacatcaaaa ttacccatcc tagccgaagt cgctatcttt tctgcaattg
    10201 ccctcgtctt tgacaaaatc ccgctcttta caatgcccca aggtggatct gtgtctttag
    10261 tcatgcttcc aatcttactg cttgctctgc gccacggact aggggtgggg gttcttactg
    10321 gtggtattgt cggaaccatt caacttttct acggtggcta cttcctaaac gtttttcaag
    10381 tttttcttga ctacgcactt tcttacgccg gaattggttt agcaggttta gtggcaccca
    10441 ccctatccaa acaaaaagat cttaaaaatg ctactctcat cattactctg gctagttttc
    10501 taggaggaag catccgattg ttagccacct tcttatcagg aattattttc tacgcagact
    10561 acgctccaga tggtatgcct gtctggttct attcctttac ctacaatatc agctatattc
    10621 ttccttccac tgcaattgcc tctattctgc tcattttact ctatagagca agaccaggtt
    10681 tttacaatct ttaaccaaaa ctgcctgctg gattttatct aacaggcagt ctttttaatt
    10741 atttttactt gctttatgct ataataggaa cgttataata cattttggag gaaattatgg
    10801 cttcttggat ttcaagaatt attaaaggta tgattatcgc actcggcttt atcttacctg
    10861 gtgtctctgg gggggtactc gctgctatcc tcggaatcta tgagcgacta attggatttt
    10921 tagcaaatat tcgaaaagat ttcaaggaaa actttcttta ttttgttcct gtaggaattg
    10981 gtggaatttt gggaatcgca cttttctctt tccctgtaga atttttattg caacatttcc
    11041 aagtcccagt tttgtgggca tttgcgggag caatcgtggg aactattcct agcctactta
    11101 aagaatcaac tcaaaagagc aaacgagata gcattgattt ggcttggttg attgggacat
    11161 tcattatttc tggcctccta ctttacaatt tgagcgatct tgtcgggaca cttccagcta
    11221 cttttgctag ttttgtattg gcaggtgcct tgatcgcttt aggggtactt gttcctggac
    11281 tcagcccttc aaacttacta ttgattttgg gtatctacac gccaatgcta aatggtttca
    11341 aatcacttga tctattcggt accttcctac caatcgcaat cggtggtgtt cttgcaatgg
    11401 ttgcattttc aaaagcaatg gaccacgctc tgaaagtata ccattcacgt gtttatcact
    11461 ttattattgg tatcgtttca tcttctactc tcctaatttt gattccacaa gcaagtaata
    11521 aagagtcaat ttcctatgct ggagcgaact ttgttacatg gattgctgct attgtcctat
    11581 ttatactagg agcatggtta gggctttgga tgagtaaact tgaggaaaaa tataaataat
    11641 ggcaaaaaag gttaaaataa agaaaacctt ggtggaccaa atattggaca aggctaagat
    11701 caatcatgat agccttgttt taaatgcctt cgaaggtcaa cttccaccag gaattgaaga
    11761 acacgaaatt tacaaaacac tggcattaac tggagataaa actggaccaa ttatcggcat
    11821 tgtcccaatc acagaacacc tgtctgagaa aaaattagcc aagatctctg gcaataaaaa
    11881 agtgagtatg attccgcaaa aggacttgga aaagacaact ggctacatcc atggtgccaa
    11941 caatcccgta ggcattcgtc agaagcataa tttcccaatc tacattgatc aatctgccct
    12001 tgaactcggt cacttgattg tctctgctgg agaaattggt cggtcgattc gaattgacag
    12061 tcaggtatta gctgattttg taaaagctga ctttgccgat ttgatcgagg ggagggacta
    12121 gacttgaaaa tctactttgt ccgtcacggt aagaccgaat ggaatttgga gggacgcttt
    12181 caaggctatt ctggagattc agctctcttg cctgaatctt atcaggattt agaaaaacta
    12241 ggcaaatacc ttgctgaaat cccctttgat gctatttatt ctagtgattt gcagcgcgca
    12301 catagcactg ccgtagaaat tgccaaagcc aatcaccatt gccaaaccgt tctaaccacg
    12361 caacaattac gtgaatggaa ttttggaacg ctggaaggaa gcaagatggc aatttttcgt
    12421 gccatctatc ccaaacaagc ctgggcactc aaacataatc tagcactttt taacaatgac
    12481 ttatttgaag ctgagagcgt tcgccaggta actcaacgaa tggtggactt tgtccaatcg
    12541 ctgaaagggc aagacatgga aacagtcctc atcgtcagcc atggtgcttt tctaaccgct
    12601 tctatccatc gcctacttgg ttttccacca gcccaactgc gtcaccgagg tggtttggat
    12661 aatgcatcgg ttactatttt agaaacaagc gatttcgaaa actttacaga attagcttgg
    12721 aatgatacca gctataaagc aaaacagtag aattttctgc tgttttttcc tatcctatta
    12781 gcaatttata ctgatttttt ctctcttcta tgataaaata gaaataacag actttggagg
    12841 aataaaattt ttatgtcaac tgaacatttt gaagaattaa atgaccaaca gattgtccgt
    12901 cgtgagaaaa tgacggctct tgctgaacaa ggcattgacc catttggaaa acgttttgag
    12961 cgttctgcca attcagctga attgaaggcc cagtacgaag ataaatcgaa agaagactta
    13021 gaagaattgg gacaaacagc aatcattgca ggtcgtatta tgaccaagcg tggtaagggt
    13081 aaggcaggtt tcgcgcacat tcaagaccgc gaaggccaga ttcaaatcta cgttcgtaag
    13141 gatgatgttg gcgaagaaaa ctatgaaatc ttcaaaaaag cagaccttgg tgactttatc
    13201 ggtgtcgagg gagatgtctt caagacaaac gttggtgagt tgtctatcca tgctcgcaag
    13261 ttgactcact tgtctaaagc gctccgccca ttgccagaaa aattccacgg tttgacagac
    13321 atcgagaccc gctaccgcaa acgttatttg gacttgatta ctaaccgcga gagctttgat
    13381 cgctttgtga cccgctcaaa aattatctca gaaatccgcc gttaccttga cggacttggt
    13441 ttcttggaag tggaaacacc tgtccttcac aatgaagctg gtggtgctgc agctcgtcca
    13501 ttcatcaccc accacaatgc ccaaaacatt gacatggtcc ttcgtatcgc gacagaactc
    13561 cacctcaaac gcttgattgt cggtggtatg gaacgcgttt atgaaatcgg acgtatcttc
    13621 cgtaacgagg gtatggatgc gactcacaac cctgagttca cgtcaatcga ggtctaccaa
    13681 gcttatgcag attacttgga catcatggac ttgaccgaag gtattataca gcacactgcc
    13741 aaggctgttg tcggcgatgg tcctgttact tatcaaggca ctgaaattgc tatccacgag
    13801 ccattcaagc gtatccacat ggttgatgcc attaaggaac aaactggcgt ggacttctgg
    13861 caagagatga gcttcgagga agcaaaagcc cttgcagctg agcacaaggt ccctgtggaa
    13921 aaacaccata cagaagttgg tcaaatcatc aacagcttct ttgaagaata cgttgaagca
    13981 actcttatcc aaccaacctt cgtctatggt cacccagtag ccgtatcccc actggctaag
    14041 aaaaacgatg aagacccacg cttcacagat cgcttcgagc tcttcatcat gaccaaggaa
    14101 tacggaaatg cctttacaga attgaacgac ccaatcgacc aattggaacg cttcgaagcc
    14161 caagccaaag ctaaagaact cggtgacgac gaagcgacag gcgttgacta cgactacatc
    14221 gaagccctcg aatacggtat gccaccaaca ggtggacttg gaatcggtat cgaccgcctc
    14281 tgcatgctct taacagacac aacaactatt cgggatgtac tcctatttcc gactatgaag
    14341 taagtaagag tagcttgcta ggattgtttt cactagaatg taccaatcgc tctccagttt
    14401 cttagcgatt ggctgaaaag gtctactaga ccttttcact cccgacgatg aaataaaaat
    14461 tacaaactgt ttaacaccgt tacttaaaac actcttggaa attccaagag tgtttttgca
    14521 tgcaaaaaaa tcccaaccac atagtcagga ttttcaggag attatgaaaa atatttagga
//
LOCUS       DASGBY010000047        14324 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.047, whole genome shotgun sequence.
ACCESSION   DASGBY010000047 DASGBY010000000
VERSION     DASGBY010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14324
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.047"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            99..464
                     /gene="mscL"
                     /locus_tag="U1396_001036"
     CDS             99..464
                     /gene="mscL"
                     /locus_tag="U1396_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEM5342233.1"
                     /translation="MLKDLKAFLFRGNIVDLAVAVVIGGAFGAIIKSFVNDIITPLIL
                     NPALKAANVQNIADLAWNGVKYGSFLSAVINFLIIGTSMFFVVKAAEKAMPKKVEEKA
                     PAGPTQEELLAEIRDLLKK"
     gene            complement(697..1710)
                     /gene="galE"
                     /locus_tag="U1396_001037"
     CDS             complement(697..1710)
                     /gene="galE"
                     /locus_tag="U1396_001037"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEM5342234.1"
                     /translation="MSILVTGGAGYIGSHTVVELLKLGKEVVIVDNLSNSSILVLDRI
                     ETITGKRPTFYELDVADKEALRQVFENENIEAAIHFAGYKAVGESVAKPIMYYENNIM
                     STLALVEVMTEFSVKKIVFSSSATVYGLNNPSPLVETMPTSATNPYGYTKVMLEQILR
                     DVEVADKEWSIALLRYFNPIGAHESGLIGEDPAGIPNNLMPFISQVAVGKREELSVFG
                     NDYDTIDGTGVRDYIHVIDLALGHIKALEKISTTTGVHTYNLGSGQGTSVLELVKAFE
                     KVNGVPVHYKLVDRRPGDVATCYANADKAWKELNWKTEKTIEDMCRDTWNWQSKNPNG
                     YEG"
     gene            complement(1814..1990)
                     /locus_tag="U1396_001038"
     CDS             complement(1814..1990)
                     /locus_tag="U1396_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEM5342235.1"
                     /translation="MSKTVVRKNESLDDALRRFKRAVTKAGTLQETRKREFYEKPSVK
                     RKRKSEAARKRKKF"
     gene            complement(2088..2717)
                     /locus_tag="U1396_001039"
     CDS             complement(2088..2717)
                     /locus_tag="U1396_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01906 family membrane protein"
                     /protein_id="HEM5342236.1"
                     /translation="MRTKLQIIGTILFVLSAAVLGTIYLAWLVYPLEISFLGLEKVVY
                     MKVADISYNFNILMNYLTNPFASVLDMPNFSSSADGLKHFADVKHLFHLTQGIFILTL
                     PAFVLFVKNILLKGYGDLVKKVIFWTMLTPMIIGLLGVLVGFDQFFALFHTVLFPGDS
                     TWLFDPAKDPVIYILPQEFFLHCFVLFFVLYEFFFWTILAWTGKKNRIG"
     gene            complement(2707..3480)
                     /locus_tag="U1396_001040"
     CDS             complement(2707..3480)
                     /locus_tag="U1396_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HEM5342237.1"
                     /translation="MTYTGYLIDLDGTIYEGKKRIPAGERFIHRLQECQIPYLFVTNN
                     TTRRPEMVQAMLAENFNIETPLETIYTASLATVDYMNDLGKEKTVYVIGEDGLKSAIF
                     EAGYVEDTENPAYVVVGLDTQLTYEKLTIATLAIQKGATFIGTNPDLNIPTERGHLPG
                     AGSLIALLKAATRVEPTFIGKPEVIIMDKALEILGTERSQTVMVGDNYLTDIRAGIDN
                     GFPTLLVLTGFTKPEEVADLPLAPTHVLNSLDEWSFDEN"
     gene            complement(3490..4107)
                     /locus_tag="U1396_001041"
     CDS             complement(3490..4107)
                     /locus_tag="U1396_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5342238.1"
                     /translation="MSQDKWLEWAVRLQALAQTGLAYGKDVYDMERFEEIRQIAAEML
                     VEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQEDKILLVQENDGLWSLPGGWCDVD
                     QSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQP
                     NSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASRSEHWETRFD"
     gene            complement(4094..4834)
                     /locus_tag="U1396_001042"
     CDS             complement(4094..4834)
                     /locus_tag="U1396_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[acyl-carrier-protein] thioesterase"
                     /protein_id="HEM5342239.1"
                     /translation="MGLTYQEEFTIPFDMVDVKQEIKLPDFISYCLGVSGRQSEELGR
                     SDLYVFQEFGLIWVVTDYELTIQRLPKYNETITIKTEAVAYNKFFCHRMFYIYDAAGN
                     LLLDILCYFVLIDFETRKVAPVPEDLIAPYQSEQVKKLPRAPKYQLLENPSVQEFPVR
                     YFDLDMNGHVNNGKYLEWMYEALGYDFLLCHVPKKIQLKYLKEVEATSLVSSRMVAEA
                     GGSQHEIVVDGHIHAQAVIEWRERHVAG"
     gene            complement(5065..6192)
                     /locus_tag="U1396_001043"
     CDS             complement(5065..6192)
                     /locus_tag="U1396_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002961311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEM5342240.1"
                     /translation="MKKRPTSAYIHIPFCTQICYYCDFSKVFIKNQPVDEYLAALMEE
                     VKFYDLPALRTLYIGGGTPSALSADQLDYLLTNLEDLLDLSQLEEFTIEANPGDLTAD
                     KIAVLKKSKCNRVSLGVQTFDDRMLKKIGRSHNQAQIYETIATLKEAGFYNISIDLIY
                     ALPGQTMEQVVDNVAKALELDIPHMSLYSLILENHTVFMNRQRRGNLHLPNEDVESDM
                     FDYILQELEKNGFEHYEISNFTKPGFESRHNLMYWDNSEYYGLGAGASGYIDGMRYRN
                     RGPIQHYLKSIREKGHSRLHEEFLSQTEQMEEEMFLGLRKKTGVSIERFEEKFGISFE
                     DRYGQVVRDLKNEGLLQEEDRWLRMTKKGLFLGDTVAERFI"
     gene            6287..6865
                     /locus_tag="U1396_001044"
     CDS             6287..6865
                     /locus_tag="U1396_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5342241.1"
                     /translation="MKKEIIYDCINLILSFLLCRWLFMTFLFYQFSNIFMTIDFWPTL
                     AAILLMTGFCFTLFRLVYKPHISRLTLWFFYACYGLLLVYLLFFKSMGVRGVNWNLLS
                     TFSQDLFLNPTILVFNLLLFLPLGLLFSFSWKKLSLFVGAILLVEACQFFFSLGFFDL
                     GDILLNTSGFALGNFLGQSAIAQSFKNRIQKK"
     gene            complement(7000..9267)
                     /gene="glgP"
                     /locus_tag="U1396_001045"
     CDS             complement(7000..9267)
                     /gene="glgP"
                     /locus_tag="U1396_001045"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM5342242.1"
                     /translation="MINLQNFVQSMYAKRIEDCTDQELYYALLAFTKQQSEAKYTNDQ
                     KKKVYYISAEFLIGKLLSNNLINLGLYDEVKSQLVAAGKDLIAIEDMELEPSLGNGGL
                     GRLAACFLDSIASLGLNGDGVGLNYHFGLFRQLFEYHQQSAVPNEWITPRSWLTESPI
                     SYQVPFANFTLTSKLYDIDVPGYKMERKNRLRLFDLGSVDDNIIYDGIEFDKEDIFRN
                     LTLFLYPDDSTDEGKVLRIFQQYFMVSNAAQLLIDEAVAKGSNLHDLPDYAVVQINDT
                     HPSLVIPELIRLLELRGISFDEAVEIVKKMTAYTNHTILSEALEKWPLDFLNYVVPHL
                     VPFIVELDRRAKEVKDDPAVNIIDEYGRVHMAHMDIHYGYSINGVAALHTEILKTSEL
                     KAFYELYPEKFNNKTNGITFRRWLMHANPSLASYLDGLLGHGYHHDASELEKLLDYKN
                     DKELKSWLEKTKQHNKRKLQRHIAKTQGVHVNPESIFDVQIKRMHEYKRQQMNVLYVI
                     HKYLDIKAGNIPTRPLTVFFGGKAAPAYTTAQDIIHLILVLSQVIKNDSEVAPHLQLV
                     MIENYNVTEASFIIPAADISEQISLASKEASGTGNMKFMLNGALTIGTDDGANVEIHE
                     LVGDENIYIFGQDSQTVIEHYANRTYHPYSFYEREVIRPLIDFITSDTIRHAGGIDER
                     LWRLQDNLKHNDHFMTLLDLEDYIVTKERMLADYEDRDSWLEKVIVNIAKAGFFSSDR
                     TIQQYNEDIWHLEAK"
     gene            complement(9443..10156)
                     /gene="deoD"
                     /locus_tag="U1396_001046"
     CDS             complement(9443..10156)
                     /gene="deoD"
                     /locus_tag="U1396_001046"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007519526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM5342243.1"
                     /translation="MSIHISAKPGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRN
                     MFGYTGTYKGHRVSVMGTGMGMPSISIYAHELINEYGVKKLIRVGTAGSLNEDVHVRE
                     LVLAQAAATNSRMINIDWPEYDLPQIADFDLLDKAYHIAKELNMTTHVGNVLSSDSFY
                     SPKLFSRNLELGQLGVKAVEMEAAALYYLGAKFGVQTLAIMTISDSLVNPEENTTAEE
                     RQNTFTDMMKVGLETLIAE"
     gene            complement(10189..10998)
                     /locus_tag="U1396_001047"
     CDS             complement(10189..10998)
                     /locus_tag="U1396_001047"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM5342244.1"
                     /translation="MSLLAKINETKTFLEEKGLVKPEFGLILGSGLGELAQEVENAIV
                     IDYADIPNWGKSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPMEVVTFPVRVMKA
                     LGCEGVIVTNAAGGIGYGPGTLMAITDHINMTGQNPLIGENLEEFGPRFPDMSNAYTK
                     EYREKAHAVAEKLGIKLDDGVYLGVTGPTYETPAEILAFKTMGAHAVGMSTVPEVIVA
                     AHSGMKVLGISAITNFAAGFQSELNHEEVVEVTEQIKGNFKGLVKAILAEL"
     gene            complement(11010..11366)
                     /locus_tag="U1396_001048"
     CDS             complement(11010..11366)
                     /locus_tag="U1396_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEM5342245.1"
                     /translation="MEKLTVYYNPDCSKCKKLRILLPSQDMEVKWVNYLETPLRGAEL
                     TALLEKMGSQPSAVTRLKEEERLALPEEEIFERLVKEPALLNRPIIEREQTAFLCRPL
                     EIIKEKMPEYDWSDYL"
     gene            complement(11366..12577)
                     /locus_tag="U1396_001049"
     CDS             complement(11366..12577)
                     /locus_tag="U1396_001049"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEM5342246.1"
                     /translation="MPKFKRVHLVVMDSVGIGAAPDSDKFFNAGVADTESDTLGHISE
                     KAGLEVPNMTKIGLGNIPRDTALATVPAESHPTGYVTKLEEVSLGKDTMTGHWEIMGL
                     NITEPFDTFWDGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIV
                     YTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFSRT
                     ANRHDYAVSPFEETVLNKLADAGVPTYSVGKISDIFNGSGITNDMGHTKSNMHGVDVL
                     IDTLKLSDFEEGFSFTNLVDFDAVYGHRRNIEGYRDCLQEFDARIPEIIDNMREDDLL
                     LITADHGNDPSYAGTDHTREYVPLLAYSKVFKGSGVLPVGHFADISATVAENFGVDTA
                     MIGESFLSQLV"
     gene            complement(12906..13580)
                     /gene="rpiA"
                     /locus_tag="U1396_001050"
     CDS             complement(12906..13580)
                     /gene="rpiA"
                     /locus_tag="U1396_001050"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEM5342247.1"
                     /translation="MTNLKEQVGIKAAEFVTDGMIVGLGTGSTAYYFVQEIGRRVAEE
                     GLQITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGADEVDGDFNGIKGGGAALL
                     MEKVVAVNSKDCIWIVDESKVVQTLGAFKLPVEVVQYGAENLFRLFEKKGYRPSFRMR
                     NGEKHITDMQNFIIDLDLRRIEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEGP
                     NIIEKK"
     repeat_region   13682..14311
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=13748..13783
                     /rpt_unit_seq="gttttactgttacttaaatcttgagagtacaaaaac"
BASE COUNT         4107 a         3217 c         2750 g         4250 t
ORIGIN      
        1 gggaaaatgt aaaatttcta aaacaaattg cttgtaaaat atttttttat gggtataata
       61 gataaagtaa aatatttatg aaaggacata tttaggatat gttgaaagat ttaaaagcat
      121 ttttgttccg tgggaacatt gttgaccttg ctgtagcagt ggtaattggt ggagcgttcg
      181 gcgcaattat caaatcattt gtaaatgata tcatcactcc attgattttg aacccagctt
      241 tgaaagcggc aaatgtacaa aatattgctg accttgcatg gaatggtgtg aagtacggta
      301 gtttcttgag cgctgttatt aacttcctaa tcattggcac ttcaatgttc tttgttgtta
      361 aagcagctga gaaagcaatg cctaagaaag ttgaagagaa agctcctgct ggtccaactc
      421 aagaagagtt gcttgcagaa atccgcgatt tgttgaaaaa ataatcaata atatattggg
      481 agtgggaaag aactcgacca gtctaaaaag agttcgtctt cccacccccg cacagttgat
      541 taggtcagat ttggagtatg aaacacgaac aaatctgcca atcaaccact gcgctgagat
      601 gttgacacga actctgagaa gcgaggatgg actttctgcc cagcctctct tccataatta
      661 caaaaataag atgtgagcct ccactcacat cttttcttat ccttcgtatc catttggatt
      721 tttcgattgc cagttccatg tgtcgcggca catatcttca attgtttttt ctgttttcca
      781 gttcaactct ttccaagcct tgtctgcgtt agcgtaacag gttgccacat cacctggacg
      841 acggtcaaca agcttataat gtactggaac gccatttacc ttttcaaagg ctttgaccaa
      901 ctctaataca cttgttcctt gacctgaacc aagattgtaa gtatgtacac ctgtagtagt
      961 tgaaattttt tcaagcgcct tgatatgacc gagtgccaaa tcaatcacat ggatataatc
     1021 acgcactcca gtaccatcaa ttgtatcata atcgttacca aaaacgctga gctcctcacg
     1081 tttaccaact gctacctgtg aaataaacgg catcaaatta ttaggaatac cagctggatc
     1141 ttccccaatc aagccagatt catgggcacc gattggattg aaataacgga gcaatgcaat
     1201 actccactcc ttatctgcta cttccacatc acgcaagatt tgttccaaca taactttggt
     1261 atagccgtac ggattcgttg cgctagttgg catagtttca accaaaggcg atggattatt
     1321 gaggccataa acagtcgcac ttgaggagaa gacaattttc ttaacactaa attctgtcat
     1381 gacttccacc aaagctaggg ttgacatgat attgttttca tagtacataa ttggcttagc
     1441 cactgattct cctactgcct tgtagccagc aaagtgaatg gctgcctcaa tgttttcatt
     1501 ttcaaaaact tggcgcaagg cttccttatc tgccacgtcc aactcataga aagttgggcg
     1561 cttgccagtg atggtttcaa tgcgatctaa aaccaaaata cttgagtttg aaagattatc
     1621 cacgataacc acttctttcc ccaacttcaa caattcgaca accgtatgac taccaatata
     1681 acctgcacca ccagtaacta agatactcat ctttttactc cttttcacct agacaaaatt
     1741 ctatatccct attatatgtt acctgttgta aaaagtaaac aaaaaacagc ctttcggccg
     1801 ttttcaaatt caattagaat tttttacgct tgcgagctgc ttctgattta cgtttacgtt
     1861 ttacagatgg tttttcgtag aattcgcgtt tgcgtgtttc ttgaagagta ccagctttag
     1921 taaccgcacg tttgaaacga cgaagagcat catcaagtga ttcgttctta cgtactactg
     1981 tttttgacat tttttcactc ccctcaattt caaagtcttt atcattttac tatgattcaa
     2041 ctcatttgtc aatatttttt tcattctaaa atatgaattt tacgttctta tcctatccta
     2101 ttcttttttc ctgtccacgc cagtattgtc caaaagaaga attcgtaaag gacaaaaaat
     2161 aatacaaagc aatgcaagaa aaactcttgg ggcaaaatat atatgacagg atcctttgca
     2221 gggtcaaata gccatgtaga atctcctgga aatagcaccg tatgaaacaa tgcaaaaaac
     2281 tgatcaaagc caacaagaac tcctaataaa ccgattatca ttggcgtaag catggtccag
     2341 aaaatgacct ttttaaccaa gtctccataa ccttttagca gaatgttttt tacaaaaagc
     2401 acaaaggcag ggagggtgag gataaaaatt ccctgagtta gatggaataa atgtttcaca
     2461 tccgcaaaat gtttcagacc atcagctgag gatgaaaaat ttggcatgtc taaaacactt
     2521 gcaaaaggat ttgttagata gttcatcagg atattgaaat tgtaggaaat atctgccacc
     2581 ttcatgtaga ccactttttc caaccccaaa aaagaaatct caagcggata aactagccaa
     2641 gctaggtaga tggttcctag aactgctgcc gataagacaa ataaaatcgt tccgataatc
     2701 tgtaacttag ttctcatcaa aactccattc atctaggctg ttgaggacat gggttggagc
     2761 caggggtaag tctgctactt cttctggctt ggtaaatcct gtcaggacta aaagagttgg
     2821 aaatccattg tcaatccctg cacgaatatc tgtcaggtag ttatctccta ccataactgt
     2881 ctggctgcgt tctgtgccta aaatctccag agccttgtcc atgataatga cttcaggctt
     2941 accgataaag gtcggctcta ctcgggtagc agctttcaaa agcgcaataa gtgagcctgc
     3001 tcctggcaaa tgacctcttt cagtcggaat gttcaaatca ggattggtac cgataaaggt
     3061 cgctcccttt tgaatagcta aggtggcaat ggtcagtttt tcataggtca actgagtatc
     3121 caaaccgaca acaacatagg ctggattttc cgtgtcttcc acataacctg cctcaaaaat
     3181 ggcagacttg agcccgtctt ctccaatgac atagactgtc ttttccttgc ccaagtcatt
     3241 catataatct actgtcgcca gactggctgt atagattgtt tcaagcggtg tctcaatgtt
     3301 aaagttttca gccaacatag cctgcaccat ctcaggacgg cgggtggtat tgttggtcac
     3361 aaataaatag ggaatctgac attcttgcaa gcgatgaata aaacgttcac cagcaggaat
     3421 ccgctttttc ccttcataaa tcgtaccatc caaatcaatc aaataacctg tatatgtcat
     3481 ttttcctcct taatcaaatc gtgtttccca atgctcagac cgactagctt ccaagcaaag
     3541 tgctaactgc tcagctgtat ttttcccaag gtagagcggt ggtaagtcat ctagactgaa
     3601 aaagccactg gcaactgttt ccgaattggg ctgaaactcc ccgccaagga gacgacatag
     3661 aatgaagacc ttggtcacgc ggtgggctga cttggcagga ttgttcttgt gtttgtccaa
     3721 aatcgccacc acacgttgag cctccacatc cagccccgct tcttccttta cttccttgac
     3781 tacattgtcc ttgacagact ggtccacatc gcaccaacca cctggtaagg accagagccc
     3841 atcgttttcc tgaaccagta ggattttatc ctcttggaaa atagctgcgc gggtatccag
     3901 cttgggtgtc tgatagcctg tttcattgca aaacaagtct ttcactactt ccaagggctg
     3961 tccagatggc tctaccaaca tttccgccgc aatctgtctg atttcctcaa atcgctccat
     4021 gtcataaaca tcttttccat aggccaagcc tgtctgagcc aaggcttgta aacgtacggc
     4081 ccattccaac cacttatcct gcgacatgac gttccctcca ttctatgaca gcttgcgcat
     4141 ggatatgccc atctaccaca atctcatgct gactaccacc agcttctgcc accatacgcg
     4201 aactcaccaa gctagttgcc tctacctctt taagatactt gagttgtatt tttttaggga
     4261 catggcagag cagaaaatca tagcccagtg cttcatacat ccattccaaa tacttgccat
     4321 tattgacatg cccattcata tccaagtcaa aatagcgaac aggaaattct tggacagatg
     4381 gattttccaa gagctgatac ttgggagccc gaggcaattt cttgacctgc tcagactgat
     4441 aaggagcaat caaatcttct ggcacaggcg ccaccttgcg agtttcaaaa tcaatcagga
     4501 caaaatagca gagaatgtcc aacaaaagat tgcctgctgc atcgtagata tagaacatcc
     4561 gatgacagaa aaacttgttg taggcaaccg cttctgtctt aatggtaatg gtttcattgt
     4621 acttaggtaa acgttgaatg gtcagttcat aatctgtcac cacccaaatc aagccaaatt
     4681 cctgaaaaac atagaggtca ctgcgaccca gttcttccga ctgccgacct gatacaccaa
     4741 gacagtagga aataaagtca ggtagtttga tttcttgttt gacatccacc atatcaaaag
     4801 gaatggtgaa ctcttcttgg tatgttagtc ccataatgtt gatctttcta gtcttaaagt
     4861 atagtctttc agttcacgtc aacagctgca ggtagcttca atagtccagt ggactattga
     4921 aggttggaaa tcgtacttac gatagtaagt aacattcgta gagtacggca aagtgagttc
     4981 aaatactcca gtggagtgtt tgaagttgga aataaggaaa cgaagtttct tcgctcgtcg
     5041 aagtaataaa aacaaactga atgactatat gaaacgctct gcaactgtat cgcccagaaa
     5101 caaccccttt ttagtcatcc gaagccaacg gtcttcttct tgcaaaagac cttcattttt
     5161 caagtctctg accacctgac cgtagcggtc ttcaaaggaa atgccaaact tttcctcgaa
     5221 tcgctcaatg gacacgccag tttttttccg tagccctaaa aacatctctt cttccatctg
     5281 ctcggtctgg ctgaggaatt cttcgtgtaa gcgagaatgg cctttttcgc ggatggactt
     5341 gaggtagtgc tgaatggggc cgcggttgcg atagcgcatg ccgtcgatgt agccagatgc
     5401 tccagctcct agaccataat actccgagtt gtcccagtac atgagattgt ggcggctttc
     5461 aaagccgggc ttggtgaagt tggagatttc gtagtgctca aagccgtttt tctccaactc
     5521 ctgaagaatg tagtcgaaca tatcggactc cacatcttcg ttgggtagat gaagattgcc
     5581 acggcgttgg cggttcatga agaccgtatg gttctccaaa atcaagctat agaggctcat
     5641 gtggggaatg tccagctcca aggccttggc gacattatcg accacctgct ccatggtctg
     5701 accaggcagg gcataaatca ggtcgatgga aatattgtaa aatcctgctt ccttgagggt
     5761 agcaatggtt tcataaatct gggcctgatt gtggctgcga ccgatttttt tcaacatgcg
     5821 gtcgtcaaag gtctgaacgc ccagcgatac ccgattgcac ttggattttt tcagaactgc
     5881 aatcttgtct gccgtcaagt cacctggatt ggcctctata gtgaattctt ccagctgtga
     5941 caagtccagc aggtcctcca gattggtcag gagataatct agctggtctg ccgagagagc
     6001 tgacggtgtt ccgcctccaa tataaagtgt gcggagagct ggcaggtcgt aaaacttgac
     6061 ctcttccata agagctgcca aatactcgtc aacaggctga ttcttaataa agaccttgga
     6121 aaaatcacag tagtaacaaa tctgggtaca aaatggaatg tggatatagg cagatgtcgg
     6181 tcgttttttc ataccaacta ttatagcaca ctgtctataa aaatattttc tacagccttg
     6241 acctcccctc aaataatgat ataatgaaat aaaaaggaga tcctctatga aaaaagagat
     6301 tatctacgac tgtattaacc tgatcctgtc atttctgctt tgccgctggc tcttcatgac
     6361 ctttcttttt taccaatttt caaacatttt catgacgatt gatttttggc cgacacttgc
     6421 cgcaatcctg ttaatgaccg gattttgctt taccctattt cgacttgtct ataaacccca
     6481 catttcgcga ctgacacttt ggtttttcta cgcttgctac gggcttctgc tagtctatct
     6541 tctctttttc aaaagcatgg gcgtcagagg tgtcaactgg aatctcctta gcactttttc
     6601 tcaagaccta tttctcaatc ctactatatt ggtttttaac ctcttactct ttttaccact
     6661 tgggttgctt ttttcatttt cttggaaaaa actttctctc tttgtagggg ccatattgct
     6721 agttgaagcc tgtcaattct tcttttcact gggcttcttt gaccttggtg acatcttgct
     6781 taacacttct ggctttgccc ttggaaactt cttgggacaa tccgcaatcg ctcaatcttt
     6841 taaaaataga atacagaaaa aatgaccccg caaggtcatt tttagtttat ttatactcaa
     6901 tgaaaatcaa aagtagccta ggaaacgaag ccgacgatag aactgaagtt catctaggct
     6961 cttgacaacg gataattttg attttcgaag agtattagct tacttagctt ccaaatgcca
     7021 aatatcttca ttgtactgtt gaatcgtacg gtctgatgag aagaaacctg ctttagcgat
     7081 gttgacgatg actttttcca accagctgtc gcggtcttca tagtcagcca acattctttc
     7141 cttagtcaca atatagtctt ccaaatctag caaggtcatg aagtggtcat tgtgcttgag
     7201 gttgtcctgc aaacgccaga gacgctcatc gatcccacca gcatgacgaa tggtatctga
     7261 tgtaataaag tcaatcaatg gacgaatgac ttcacgttcg tagaaggaat atggatggta
     7321 ggtcctattt gcatagtgtt cgataactgt ttggctatct tgaccaaaga tataaatatt
     7381 ttcatcacct accaactcat gaatttccac attggcccca tcatctgtac cgatggtcaa
     7441 ggctccattg agcatgaatt tcatgttacc tgtaccagat gcttccttag atgcaagtga
     7501 aatttgctca gaaatatccg ctgctggaat gataaagcta gcttcggtta cgttgtagtt
     7561 ctcaatcata actagctgca aatgtggtgc cacttctgaa tcatttttga taacctgtga
     7621 taagactaga atcaagtgga tgatgtcttg agctgttgta taggctggag ctgcttttcc
     7681 tccaaagaag actgttaacg ggcgagtcgg gatattgccc gccttgatat ccaaatactt
     7741 atggataaca tagaggacat tcatctgttg acgcttgtac tcgtgcatgc gcttgatttg
     7801 tacatcaaag atggattcag gattgacatg tacaccttga gttttggcaa tatgacgttg
     7861 caacttccgc ttgttgtgtt gctttgtctt ttccaaccaa gatttcaatt ccttatcatt
     7921 tttgtaatcc aacagctttt ctagttcact tgcatcgtga tggtagccat gtccaagtag
     7981 gccgtccagg tagcttgcca aacttggatt agcatgcatg agccagcgac ggaaggtaat
     8041 cccatttgtc ttattattga atttttcagg atatagctca tagaaagctt tcaactctga
     8101 agttttcaaa atctctgtat gaagtgccgc caccccattg atagaataac cataatgaat
     8161 atccatgtgt gccatgtgaa cacggccata ttcatcgatg atattgacag caggatcatc
     8221 cttcacttct ttggcacgac gatccaattc tacgatgaac ggtaccaagt gcggaaccac
     8281 atagttcaga aaatcaagcg gccatttttc cagcgcctct gacaagatgg tgtggttggt
     8341 ataagcagtc attttcttaa caatttcaac tgcctcatca aatgaaatac cacgaagctc
     8401 caaaaggcga atcaattctg gaataacaag tgatgggtga gtatcgttga tttgaacaac
     8461 agcataatca ggcaggtcat gtaagtttga ccccttagca actgcttcgt caatcaatag
     8521 ttgcgcagcg ttagacacca tgaaatactg ctggaagatg cggagaactt ttccttcatc
     8581 ggtcgaatca tctggataga ggaagagggt caagtttcgg aaaatatctt ccttatcaaa
     8641 ttctattccg tcataaatga tattgtcatc aactgaacca aggtcaaaca agcgaagacg
     8701 attcttacgc tccattttat aaccaggtac atcgatgtca tacaacttag atgtcaaggt
     8761 aaagttagca aatggcacct gataagaaat cggtgactct gttaaccatg aacgtggtgt
     8821 aatccactcg tttggcacag cagactgctg atggtattca aataattgtc taaacagtcc
     8881 aaagtgataa ttcaagccga ccccatcacc gttaagacct agactagcaa ttgaatcaag
     8941 gaagcaggca gccaagcgcc ccaaacctcc attaccaaga gacggttcaa gctccatgtc
     9001 ttcaatagca atcaaatcct taccagccgc caccaactgg cttttaacct catcataaag
     9061 accaaggttg attaaattat tagacaagag cttaccaatt aagaactctg ctgaaatata
     9121 gtagaccttt ttcttttggt catttgtata cttagcttca ctctgctgtt ttgtaaaagc
     9181 aagcaaggca taatagagtt cttggtctgt acaatcttca atgcgtttgg catacataga
     9241 ctgaacaaaa ttttgtaaat taatcatgag gactctccta gatatattaa tgtaatcatt
     9301 cagaaaggtt tcgctttgcc tttgtaaacg ttttcttaat tataccctat ttataaaaaa
     9361 aagacaagcc aacttccgta caaatagaaa ttagttcgtc ttttaaacga ttgcaggtta
     9421 ctacaatcag aattattctt aattattctg caatcagagt ttccaaacca actttcatca
     9481 tatccgtgaa agtattttga cgctcttctg ctgtggtgtt ttcctctgga ttaaccaagc
     9541 tatctgaaat cgtcataatg gcaagcgttt gaacgccaaa cttagcacct aggtaataaa
     9601 gtgcagctgc ttccatttct acagccttga cacctagttg acctaattct aagttgcgac
     9661 taaacaattt tggagaatag aaactatctg atgataaaac attgccaaca tgcgttgtca
     9721 tgttgagttc tttggcgata tgataagcct tatctaaaag atcaaaatca gcgatttgtg
     9781 gcaaatcgta ctctggccag tcaatattaa tcatgcgaga gttggtcgcg gctgcttgcg
     9841 ccaaaaccaa ttcacggaca tggacatcct cattcaaaga acctgctgtt cccacacgaa
     9901 ttagtttttt cacaccatat tcgttaatca attcatgagc atagatagag atggatggca
     9961 ttcccatacc tgttcccatg acagaaacac ggtgaccttt gtaagtacca gtatagccaa
    10021 acatattgcg gacttcattg aagcaaactg cgtcttcaag aaaattttca gcgataaatt
    10081 tagcacgaag cggatcacca ggaagcaaaa tcttatcagc gatttcgcct ggttttgcgg
    10141 aaatatggat agacatgtaa tgtacctctt tgttctattt tcgaatgctt acaactcagc
    10201 caagatagct ttcaccaagc ctttgaagtt gcccttgatt tgctcggtta cttctacaac
    10261 ttcttcgtga ttgagttcag attggaaacc agctgcaaag tttgtgatag cagaaatacc
    10321 caagactttc atacctgagt gagctgccac gataacttct ggtactgttg acataccgac
    10381 tgcgtgggca cccatagtct tgaaggccaa gatttcagca ggtgtttcat aggtagggcc
    10441 tgtcacaccg agatagacac catcgtccaa cttgataccc aatttttccg caacggcatg
    10501 ggctttttca cggtattctt tagtgtaggc attggacata tctgggaaac gtggaccaaa
    10561 ttcttccaag ttttcgccaa tcaatggatt ttggccagtc atgttgatgt ggtctgtaat
    10621 ggccataagg gtacctggac cgtagccaat accacccgcg gcatttgtta caatcacgcc
    10681 ttcacaacca agagctttca tgacacggac tgggaaggtc acgacctcca taggattgcc
    10741 ttcgtagaag tggaatcgac cttgaagagc taagacctta cgtcctgcca aatcaccgta
    10801 caccaactta ccagcatgac caacaactgt tgacttaccc cagtttggaa tatctgcata
    10861 gtcaatgaca atggcatttt caacttcttg ggccaattca cccaagccag aacccaaaat
    10921 caaaccgaat tcaggtttta ccaaaccttt ttcttccaag aacgtttttg tttcattgat
    10981 ttttgcaagt aaactcatat tttctccttt tataaataat ccgaccagtc atattctggc
    11041 attttttctt taatgatttc aagcggacga cagaggaagg ctgtctgctc tcgctcgata
    11101 atggggcggt tgagaagagc aggctcttta actaaacgct caaagatttc ttcttctggc
    11161 aaggctagtc gttcttcctc cttcaatcga gtaactgctg aaggttgact gcccattttt
    11221 tccaagagag ctgtcaattc agctcccctt aatggcgttt ccaaataatt aacccacttg
    11281 acttccatat cctgactggg cagcaatatt cttaattttt tacacttgct acagtcagga
    11341 ttgtaataga cagttagctt ctccattaaa ccaactgtga taagaagctt tcaccaatca
    11401 tggctgtgtc cactccgaag ttttccgcaa cggttgctga aatgtccgca aaatggccta
    11461 ctggcaagac accgctacct ttgaaaacct tgctgtatgc taagagtggc acatattcgc
    11521 gtgtgtgatc tgttccagca taggatggat catttccgtg gtcagctgta atcaagagca
    11581 aatcatcttc acgcatattg tcaataatct ctggaatacg tgcatcaaac tcttgcaaac
    11641 aatcgcggta gccttcgata ttgcgacggt gaccatacac agcatcaaag tcaactaagt
    11701 ttgtgaagga gaaaccttcc tcgaagtctg ataacttcag agtatcaatc aacacatcga
    11761 caccgtgcat gttggacttg gtgtgaccca tatcatttgt aatacctgaa ccattgaaaa
    11821 tatcactgat tttaccaact gagtaagttg gtacacccgc atctgccagt ttgttgagta
    11881 ctgtttcttc aaacggtgat actgcatagt catgacgatt tgcagtccgt gagaaattgc
    11941 ctggctcacc aacgtatgga cgggcaataa tccgaccaag aagagctggg cgttcaaggg
    12001 taatggaacg agcgtattca cagatacgat acaactcatc aagtggaata atatcttcgt
    12061 gggctgcaat ctgaaggact gggtctgcgg aggtatagac gattaactcc ccagtttcca
    12121 tttggcgagg gccaaagtca tcaatgacag ctgtacctga atacggcttg tttgcttcgc
    12181 ggatgatttt acgacctgag aattcttcga tttttgtcaa aatctcttca gggaaaccat
    12241 cccagaatgt atcaaatggc tcagtaatat tgagacccat aatttcccag tgtccagtca
    12301 tggtatcctt accaagcgat acttcttcca acttggtcac gtaaccagtt ggatggcttt
    12361 cagcaggaac tgtcgcaagt gctgtatctc gagggatatt tccaagacca atcttggtca
    12421 tattaggcac ctcaagccca gctttttcag aaatgtgacc gagagtatca gattctgtat
    12481 ctgctacacc cgcattgaaa aacttatctg agtctggtgc tgcgccgatt ccgacagagt
    12541 ccataactac caagtgaaca cgtttaaatt taggcataat tgtctccttt atttgatata
    12601 gttagattca accaaaatca gcgtccaacc aagttgctag actggaaatt atcatcacca
    12661 tatctaaaca ttttaatggg gtgcaatact tatacagtca aagctctcgg catcaaactt
    12721 cctaaccatc aaaactagat actgttactc gcttcactgc ctgctgttca gctatcactt
    12781 tttcagtatc tatcatctga ctgctacgag gtaaggggat agatttttga agagtctaaa
    12841 cgttcgtgtt ttcattatac cataaaaaag cctctcattg taccaaaatg agaagcgttt
    12901 tcaatttatt tcttttcgat gatgttcggt ccttctggtg taccaacaat taccttggaa
    12961 atcaatccaa taaagagacc gtgttctaca acaccgacgg tccgatccaa ttcttccgcc
    13021 aatgcatatg tgtcttctat tctgcgcaaa tcaaggtcaa tgataaagtt ctgcatatcc
    13081 gtgatatgtt tttctccatt acgcatacga aaacttggac gatacccttt tttctcaaat
    13141 agtcggaaaa gattttccgc accgtactgt acaacttcca ccggcaactt gaaggctcct
    13201 agggtttgaa ccaccttaga ctcatccaca atccagatgc agtccttgct attgactgct
    13261 accactttct ccatgagaag cgctgcgcca ccgcctttaa tcccattgaa gtcaccatca
    13321 acctcatctg ctccatccac cgtcaagtcc acatattcga cttcgtcgat attttttagg
    13381 ggaatcccaa gggacgcagc atgttctgcc gtagcatgag aggtcgttac gcctgtgatt
    13441 tgtaaccctt cttctgcaac ccggcggcca atctcctgca cgaaatagta tgccgtcgaa
    13501 ccagtcccca gcccaacaat cataccgtcc gtcacaaact ccgccgcctt aatcccaacc
    13561 tgctctttta ggtttgtcat ctttgtctcc ttttaaaaaa ctgatacaac tattatagca
    13621 tgaagcaagc aagacaaaac aagaatttta gaaaattgtg ggggagatgt actatcgctt
    13681 atgattacga taatataaat cttgagagta caaaaactac aaatgttatg gggataacta
    13741 ccagaaggtt ttactgttac ttaaatcttg agagtacaaa aacggtctca atggcaacct
    13801 ggtcttcttc tttgttttac tgttacttaa atcttgagag tacaaaaaca catcatttgt
    13861 ttatcgggac ccaaccaatg ttttactgtt acttaaatct tgagagtaca aaaacttaga
    13921 atattctcag caagtaaaca ctgatgtttt actgttactt aaatcttgag agtacaaaaa
    13981 cagtgtgaaa aagtcatata cacgacttcc cgttttactg ttacttaaat cttgagagta
    14041 caaaaaccga acctatgaaa tatacgtcac gtattgagtt ttactgttac ttaaatcttg
    14101 agagtacaaa aactcatctg tttcttcttt ttcattttct aaagttttac tgttacttaa
    14161 atcttgagag tacaaaaact ggtgctgttg gcactggctc aattcgtgag ttttactgtt
    14221 acttaaatct tgagagtaca aaaacagcag gcagatgttg ctcagatcgt cattggtttt
    14281 actgttactt aaatcttgag agtacaaaaa cggtctcaat ggca
//
LOCUS       DASGBY010000048        13769 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.048, whole genome shotgun sequence.
ACCESSION   DASGBY010000048 DASGBY010000000
VERSION     DASGBY010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13769
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.048"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(29..99)
                     /locus_tag="U1396_001051"
     tRNA            complement(29..99)
                     /locus_tag="U1396_001051"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(65..67),aa:Cys,seq:gca)
     gene            358..1134
                     /gene="rpsB"
                     /locus_tag="U1396_001052"
     CDS             358..1134
                     /gene="rpsB"
                     /locus_tag="U1396_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEM5342248.1"
                     /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQ
                     QTVKLADQAYEFIRDAAANDAVILFVGTKKQAAEAVKDEAIRAGQYFINHRWLGGTLT
                     NWGTIQKRIARLKEINRMEEDGTFDVLPKKEVALLNKQRARLEKFLGGIADMPRIPDV
                     MFVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMA
                     DAIIEGNQGEDSVAAVEAELAAEPASTESIEELVEVVEGK"
     gene            1443..2483
                     /locus_tag="U1396_001053"
     CDS             1443..2483
                     /locus_tag="U1396_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEM5342249.1"
                     /translation="MAEITAALVKELREKSGAGVMDAKKALVETEGDIEKAIELLREK
                     GMAKAAKKADRVAAEGLTGVYVDGNVAAVVEVNAETDFVAKNAQFVELVNTTAKVIAE
                     GKPADNEAALKLAMPSGETLEEAYVNATATIGEKISFRRFALVEKTDAQAFGAYQHNG
                     GRIGVISVVEGGDETLAKQISMHIAAMKPTVLSYTELDEQFVKDELAQINHKIEQDNE
                     SRAMVDKPALPLLKYGSKAQLTDEVIAAAEEAIKAELAAEGKPEKIWDKIIPGKMDRF
                     LLDNTQVDQAYTLLAQVYIMDDSKTVEAYLNSVNASVVEFARFEVGEGIEKASNDFEA
                     EVAATMAAALGK"
     gene            complement(2640..3341)
                     /locus_tag="U1396_001054"
     CDS             complement(2640..3341)
                     /locus_tag="U1396_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HEM5342250.1"
                     /translation="MLDISYQANTFHISHHGRPIGSIHTYSNPYHQTNIYLRLDLADY
                     DCTIAEQLFQSLQTSLGGKPLQVMLSSAEQERIHFLTAAGFVCKRKCYEFEVTKQDYL
                     SQTGTSNLGIVRKGTAPYQIACQQIFDHYQTVHQDINPWTASQEEFEKDLPDLVYTDS
                     ENCAFVDTDEIAYVCGKDEQSFGSFIQAVICQLFEQYEQISFEADDCDPIAMHLADQF
                     RQPNKPSWDAYILEI"
     gene            complement(3341..3679)
                     /locus_tag="U1396_001055"
     CDS             complement(3341..3679)
                     /locus_tag="U1396_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM5342251.1"
                     /translation="MNFQDYIQDFTSVTVEQAQNLLATKEGAVLFIGRATCPYCNRFA
                     PKLHKVAQDKQVTVHFLDSSQISPELQALRDHYQVPTVPGLLVAKSTGVQVRCDSSMT
                     EEEIAAFIQD"
     gene            3949..4407
                     /locus_tag="U1396_001056"
     CDS             3949..4407
                     /locus_tag="U1396_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HEM5342252.1"
                     /translation="MAMKNTSDYIEEHIKAILDQVSVAELRRSELASRFEVVPSQINY
                     VIKTRFTASRGYIVESKRGGGGYIRIGRITFSDKHELVHDLLNNMGEQLSATVYADIL
                     QLLFDEGLMTEREGNLFLSTGSDEILGKDASTIRARMMRQILRRLDRKEE"
     gene            4411..6864
                     /locus_tag="U1396_001057"
     CDS             4411..6864
                     /locus_tag="U1396_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5342253.1"
                     /translation="MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAG
                     AVLAEYPISISDYEHATFIVTDKVYREELDSFRILPSSKRLDETASFAKKIAEVVKAK
                     ELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNVEARAGFTKEDLK
                     AIRSVMKGGKAKPANMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIA
                     RMIQILSRKTKNNPVLVGDAGVGKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVI
                     AGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGIDSTLDAANILKPALA
                     RGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHR
                     VRIGQAAVETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKA
                     LMDKKYKTVSKLLIKTKEDAEASQNYDLEVTEEDVLETLSRLSGIPVAKLSQSDTKKY
                     LNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTELAKA
                     LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLL
                     FDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGF
                     GALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVFHSLTESDMQDVVKVMVKPLF
                     AVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLATG
                     STLKVGVKGEELKFDVVKG"
     gene            6983..7474
                     /locus_tag="U1396_001058"
     CDS             6983..7474
                     /locus_tag="U1396_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEM5342254.1"
                     /translation="MNQTIAVVFGTFAPMHKGHLDLIERAKLACGQVCVVVSGYDRDR
                     GDRIGLDLTKRFQFAQEQFKEDDFVEVRALDETDLPPYPDGWDLWLERLLGLLDLSEH
                     QVPVFYVSEEEYAQELHRRGYQAHYSPRKFGISATLIREHPQQYQDYIAPAFLAFFGK
                     ERL"
     gene            7672..8055
                     /locus_tag="U1396_001059"
     CDS             7672..8055
                     /locus_tag="U1396_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342255.1"
                     /translation="MKKNLLKKTIVCFINLLVVLMAVAPPAVSAQAASRIETPVETKS
                     KHFSNLEGGGDLSYINLSGYSNRFGTAASGRSGTYFGPRGTYVTRDWSVNSGGGSHGG
                     SYWKLFNRNGQRIGTYDKYGNYLRP"
     gene            8075..8308
                     /locus_tag="U1396_001060"
     CDS             8075..8308
                     /locus_tag="U1396_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342256.1"
                     /translation="MQIIQLNNFEIKISERLHSIYDGKNKILVIFPDHTAICCQVKLS
                     QAGGLLVDTFWGVEYEISGNMVTIYYTDEEELE"
     gene            8305..8547
                     /locus_tag="U1396_001061"
     CDS             8305..8547
                     /locus_tag="U1396_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342257.1"
                     /translation="MKQYLFRQHTIHVHPSLNVFIGNDEAEMVLYSKEPDFTLLALLR
                     WLPDKNSIRIINRWKLTYEYDGNNNIYIHYDSDYRY"
     gene            complement(8661..9665)
                     /gene="dusB"
                     /locus_tag="U1396_001062"
     CDS             complement(8661..9665)
                     /gene="dusB"
                     /locus_tag="U1396_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEM5342258.1"
                     /translation="MANLNTPFMIGDVEIPNRCVLAPMAGVTNSAFRTIAKEMGAGLV
                     VMEMISEKGLLYNNEKTLHMLHIDDNEYPMSIQLFGGDAEGLKRAADFIQKNTKANIV
                     DINMGCPVNKVIKNEAGAKWLKDPDKIYHIIKEVTSVLDIPLTVKMRTGWNNTDLAVE
                     NALAAESAGVSALAMHGRTREQMYTGTVDLETLTKVAGSLTKIPFIANGDIRTVEDAR
                     QRIEEVGADAVMVGRTAMGNPYIFNQINHYLETGEVLPDLSFDDKLNVAFDHLTRLTN
                     LKGESIAVREFRGLAPHYLRGSAGAAKIRGAVARAETIEQVQELFDQAREAYQERIAK
                     "
     gene            complement(9658..10524)
                     /gene="hslO"
                     /locus_tag="U1396_001063"
     CDS             complement(9658..10524)
                     /gene="hslO"
                     /locus_tag="U1396_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEM5342259.1"
                     /translation="MDKIIKTLSKSGHFRAFVLDSTETVKTAQEKHNTMASSTVALGR
                     TLIANQILAANEKGDTKITLKILASGAVGAIISVANTKGQVKGYIQNPDLDYKRTATG
                     EVIVGPLVGNGQFLVITDYGTGHPYNSMTPLISGEIGEDFAYFLTDSQQTPSAVGLNV
                     LLDEEDKVQVAGGFLLQVLPGATEAEIARFEKRIQEMPAISSLLASENHIEALLSAIY
                     GDDDFKRLSEEEIGFVCDCSKDRFLDALASLPKTDLQEMKEEDKGVDITCQFCQTHYH
                     FDENDLEELING"
     gene            complement(10604..13723)
                     /locus_tag="U1396_001064"
     CDS             complement(10604..13723)
                     /locus_tag="U1396_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5342260.1"
                     /translation="MKIRNRSLFYTVGSVAVTAGLLLSLATSPIPSVHATEVAIENYP
                     SLAITKSEVTIQGYLIAPLNSSGTAFDATNKTNLALGASMDTAAADTIPIQLKEPLRS
                     QFNLVDHPELVGKLVRITGTSDTYMKRAGIKPATAIEIVDSSSTNVQPPTSENTATKP
                     SDLVSIPIATVRSGAQGTEYTVSGKIISLVNGWGGNGFYLQGSDGAGIYIYPGAALGY
                     QPGDTVQLTGTLGEYKGELQLTTVSNHKAISENFNTPITETNIAQLATQAQATLVSLK
                     NLTVGDIQSDSYQNSTFTVTDSEGQTVDVRLDSRTGIKTADLLNRINKGDKINLTAIL
                     STYNGKIQLKPFDLSHFEVIEKATTEAETGKTEAVTVGRIQGASHQSPLTNQSVMLKN
                     VVVTYVTSANNFYVQDVTPDGDVKTSDGINIFTDKLKTNVKVGDLVTVAGRVEEYQGR
                     GYAERDKTDLTITQIRATEVTVDGTAPVPSPIVLGLDRSIPADIIDNDGLAQFDPEQD
                     ALDFWESVEGMVVAVDDAKILGPLKNKEIYVTPATSQLPLNNVGGVNLRPEGNNTNII
                     PLLLKNGKQIVKSGDYFTGRIAGPVTYSYTNYKVYVDDSTLPTLHEGATKPETTTIIP
                     NDDKLTIASYNIENFSANSKSTSDAKVQRIAKSFVSDLHSPDIIGLIEVQDNNGATND
                     GTTDASKSAERLIAAIQAAGGPTYTYVDIAPENNKDGGQEGGNIRVGFLYNSKRVSLS
                     DKPIGTATQAVAWENGELNLSLGRIDPTNPAWAAVRKTLAAEFVFKGEKVVVLANHLN
                     SKRGDNGLYGKIQPVSFKSEEKRHILAQIIADFTKAGLAQNPNANIVMLGDFNDYEFT
                     KTIEILETGGMANLVSRHDASDRFSYFYNGNNQSLDNMLVSTNLLDRYAFDMVHVNSA
                     FMEEHGRASDHDPLLVQLDVTKAQEPTQPEPSDKQTDDSGTVNNSDDNGTTNNNKPTN
                     LSTSNQTAVNANDRSGATDKGQTTVTPTANNSQKKILPKTGGETSFVLITIGLVFLIA
                     CLVKKQKES"
BASE COUNT         3749 a         2656 c         3345 g         4019 t
ORIGIN      
        1 agattcctag gttttttaga atattaaaag gcggtagacg gatttgaacc gacgatcaag
       61 cttttgcaga gccgtgcctt accacttggc tataccgcca taacaaataa tattgtacct
      121 taaatagtga aattggtcaa gtggaaattt tcgtatcagc cccatttcta atttaccgtg
      181 ctgaattttg acgaatttct ctgctatttt acttgaaaat agggaggtat tctgatatac
      241 taatagagtt gctgtgcaac aaatactcat ctcggaccaa ttgtggtctt gttgccgaaa
      301 ggttaggctg caagtcgaag ttcgggagag gagaaaaaac aaaaaggaga aatactcatg
      361 gcagtaattt caatgaaaca acttcttgag gctggtgtac acttcggtca ccaaactcgt
      421 cgctggaatc ctaagatggc taagtacatc ttcacagagc gtaacggtat ccacgttatc
      481 gacttgcaac aaactgtaaa attggctgac caagcttacg aattcatccg tgacgctgca
      541 gcaaacgacg cagttatctt gttcgtaggt acaaaaaaac aagctgctga agctgttaaa
      601 gacgaagcta tccgcgctgg tcaatacttc atcaaccacc gttggttggg tggaactctt
      661 acaaactggg gtacaatcca aaaacgtatt gctcgtttga aagaaatcaa ccgtatggaa
      721 gaagatggaa ctttcgacgt gcttcctaag aaagaagtag cattgttgaa caaacaacgt
      781 gctcgtcttg aaaaattctt gggcggtatc gctgacatgc cacgcattcc agatgtaatg
      841 ttcgttgttg acccacacaa agagcaaatc gctgttaaag aagctaaaaa attgggtatc
      901 ccagttgtag cgatggttga cacaaacaca gatccagatg atattgatgt tatcatccca
      961 gctaatgacg acgctatccg cgctgttaaa ttgatcacag ctaaaatggc tgacgctatc
     1021 atcgaaggca accaaggtga agacagcgta gcagcagttg aagctgaatt ggcagctgag
     1081 ccagcatcta cagaatcaat cgaagaattg gttgaagttg tagaaggaaa ataagtaacg
     1141 aaggcgttta gaaatctgta tgaaaatagg aaactgacgc agtatgcttg catacaagga
     1201 agtttatctt tttcactaag attttagcct gagtacaata aaataagtaa cgaggacgtt
     1261 aaaaaaagcg ttagatttta gaaaatggac gtagcagtct ggggactgca aggagatttg
     1321 tctaaatcct agctttttag tccgagtaca ttctacatca tttatcagac acaaaaacaa
     1381 tcctagaggg gcagggctga gcccgctcct ctattttaca aatacaaaca aggagaatag
     1441 acatggcaga aattacagca gctctcgtta aagaattgcg tgaaaaatca ggtgctggcg
     1501 ttatggacgc gaagaaagca ttggttgaaa ctgaaggtga tatcgaaaaa gcgattgaat
     1561 tgcttcgcga aaaaggtatg gctaaggcag ctaagaaagc tgaccgtgta gcagctgaag
     1621 gtttgactgg tgtttacgtt gatggtaacg tagcagcagt tgttgaagtt aacgctgaaa
     1681 cagacttcgt tgcaaaaaac gctcaattcg ttgaattggt aaacactact gctaaagtaa
     1741 ttgcagaagg taaaccagct gacaacgaag cagctcttaa attggctatg ccttcaggtg
     1801 aaactcttga agaagcatac gtaaacgcaa ctgcaactat tggtgagaaa atctcattcc
     1861 gtcgctttgc tttggttgaa aaaacagatg ctcaagcatt tggtgcatac caacacaatg
     1921 gcggccgtat cggtgttatc tcagttgttg aaggtggcga cgaaactctt gcaaaacaaa
     1981 tctcaatgca catcgctgcg atgaaaccaa ctgttctttc ttacactgaa ttggatgagc
     2041 aattcgttaa agatgagttg gcacaaatca accacaaaat tgaacaagac aacgaaagcc
     2101 gtgcaatggt tgacaaacca gcattgccat tgttgaaata cggttcaaaa gctcaattga
     2161 ctgacgaagt gattgcagca gctgaagaag ctatcaaagc agaattggca gcagaaggca
     2221 aaccagaaaa aatctgggac aaaatcatcc caggtaaaat ggatcgcttc ttgcttgaca
     2281 acactcaagt tgaccaagct tacacacttc ttgcacaagt ttacatcatg gacgacagca
     2341 aaacagttga agcttacttg aactcagtga acgcttcagt tgtagaattt gctcgtttcg
     2401 aagtaggtga aggtatcgag aaagcttcaa acgactttga agcagaagtt gcagctacaa
     2461 tggcagcggc tcttggtaaa taatgaatag tcaagaactt ccgaaagggg ggttcttttt
     2521 tggcaaaatc ggtcttaggg cggatgtcgg atatgcttga ttcggttata ctagtatcaa
     2581 tcctaaatat ttttcataat ctccttaaaa agcaccggcc atatggtcgg tgctttttgt
     2641 tagatttcta aaatgtaagc atcccagcta ggcttgtttg gttgtcggaa ttggtcagct
     2701 aaatgcatgg cgataggatc gcagtcatca gcctcaaagc taatttgctc atactgttca
     2761 aatagttggc aaataactgc ttggatgaag gaaccaaagc tttgttcatc ttttccacaa
     2821 acgtaggcaa tttcatcggt atctacgaag gcgcaatttt ctgagtctgt ataaactagg
     2881 tcaggtaagt ccttctcgaa ttcttcttga ctggcagtcc atggattgat gtcttggtgg
     2941 actgtttgat agtggtcaaa aatttgctga caggctattt gataaggtgc ggtgcctttg
     3001 cggactatgc ctaagttgga agtgcctgtt tgactgagat agtcttgctt ggtcacttcg
     3061 aactcataac atttccgctt gcagacaaag ccagctgcgg taaggaaatg gattctttcc
     3121 tgctctgcag aggagagcat aacttgaaga ggctttccgc ctaaggaagt ctgtagggac
     3181 tggaagagct gctctgctat ggtgcaatcg taatcggcca aatccagtcg cagatagata
     3241 ttggtctggt ggtaggggtt gctgtaggta tggatgctgc cgattggtct tccgtgatga
     3301 gagatgtgga aggtgttggc ttggtaggaa atgtctagca ttagtcttga ataaaagccg
     3361 caatttcttc ttcggtcatg ctggaatcgc agcggacttg gacaccagta gatttagcga
     3421 ccaggaggcc tggaacagtt gggacttggt agtggtcgcg gagggcctgg agttctggac
     3481 tgatttggct ggagtcgagg aagtggacgg tcacttgctt gtcttgggct accttgtgga
     3541 gttttggtgc gaagcggttg cagtaaggac aggttgctcg tccgatgaag agaacagccc
     3601 cctctttggt ggctagaagg ttctgtgcct gctccacagt cacacttgta aagtcttgaa
     3661 tgtaatcttg aaagttcatg ttataagata taaagggctt taagcggaca cggataaaat
     3721 aggaaacaaa acgacgacta gttctcgttt atctttttgg cctagtccgt agcccgtatt
     3781 cagttcaact aaatacggaa gccctagtcc tttctgtttt ttcttttatt ataggataaa
     3841 gcagagcaga tttcaaaatt ctgctacgct agttgctagg cttttgcttt caaaattcgt
     3901 cattttaagg tataatggtc aaagatagtc aaagaaagag gcgatactat ggcgatgaag
     3961 aatacatcgg attatataga agagcacatc aaagccatct tggaccaagt cagtgtagct
     4021 gagttgcgtc gaagtgaatt ggctagtcgg tttgaagtgg tgccaagtca gattaactac
     4081 gtcattaaaa ctcgttttac agccagccgt ggctatattg ttgagagtaa gcgtggtggt
     4141 ggtggttata ttcgaattgg gcggattacc ttttcggata agcacgaact ggtccatgat
     4201 ttgttaaaca atatgggtga gcagttgtct gcgacggttt atgcggatat tttacagctc
     4261 ctttttgatg aaggattgat gacagaacga gaaggcaatc tctttttgtc cacaggatct
     4321 gatgaaatat taggaaaaga tgcaagtact attcgagcac gcatgatgcg tcaaatacta
     4381 cgacgtttag ataggaaaga ggaataattc atgaaaattt caactggttt acagcgggtt
     4441 tttgaagatg cccagctagt ggcccaacgt tatgcctgtg attacttgga aacctggcat
     4501 gttctcttgt ctttcgttat caaccatgat acagtcgctg gcgctgtttt ggcagaatat
     4561 cctatttcaa tttctgacta tgaacatgca acttttattg tgaccgacaa ggtctatcgt
     4621 gaagagttgg atagttttcg tattttacca tcttctaaac gtttggatga aacggctagt
     4681 tttgccaaga aaattgcaga agtcgtcaag gctaaggagc tgggaacgga acatttgttt
     4741 atggctatgt tgttggacaa gcggtcaaca gctagtcaga ttttggacaa ggtaggtttt
     4801 tgttttgaag actcagatga taagtttcgt ttcttggatt tgcgtaaaaa cgtggaggca
     4861 cgtgcgggat ttaccaaaga ggaccttaaa gctatccgca gtgtgatgaa gggtggcaaa
     4921 gccaaacctg ccaatatggg acagatgatg ggaatgcccc cagcacctca aagtggtgga
     4981 ttagaagact acactcgtga tttgacagct ttggcgcgtg aagggaagat tgaacctgtc
     5041 atcggtcgag acgctgagat tgcacggatg atccaaattc tatcacgtaa aaccaagaac
     5101 aacccagttc tagttggtga tgctggtgtc ggaaaaactg cgcttgcttt gggtcttgct
     5161 caacgtgttg ctgcaggtga tgtccctgtc agcttggcta agatgcgggt tttggaactt
     5221 gacttgatga acgttatcgc tggaactcgt ttccgtggtg atttcgaaga gcggatgaat
     5281 aatatcatca atgacatcga ggaagatggt caggtcatcc ttttcatcga tgagttgcat
     5341 accattatgg gttctggctc ggggattgat tcaaccttgg atgcagccaa tatcctcaaa
     5401 ccagctcttg ctcgtggcac cctccgtacg gtcggagcga cgactcagac agagtaccaa
     5461 aagcatattg agaaagacgc agccctggtt cgtcgttttg ccaaagtgac cattgaagag
     5521 ccgacagttg aggacagtat tgccattttg acagggctta aaggtacttt tgagaaatac
     5581 cacagggtcc gtattggaca agcagctgta gagactgctg tgacctacgc taagcggtat
     5641 ttgaccagta aaaacctacc ggattcagcc attgatctgc tggatgaagc cagtgcaacg
     5701 gtacaaaatc gagtgaaagg gcaggctgag gaaacaggac tgacgagcat agacaaggcc
     5761 ttgatggata aaaaatataa gactgtcagc aagcttttga ttaaaacgaa agaagatgcc
     5821 gaggctagtc aaaactatga ccttgaagta acagaagaag atgttttaga aacacttagc
     5881 cgcttgtcag gtatcccagt agccaagctt agccaatcag atactaagaa gtatctgaat
     5941 ctggaagcag aattgcacaa gcgtgtgatt gggcaggaag aagctatttc tgcagttagc
     6001 agagctattc gccgtaatca gtcagggatt cgtacaggtc gcagaccgat tggttccttt
     6061 atgttcttgg gaccaactgg tgtcggtaag acagagcttg ctaaagcctt ggcagaggtt
     6121 ctctttgatg atgaatctgc tcttatccgt tttgatatgt ctgagtatat ggagaaattt
     6181 gcggccagcc gtctcaatgg agcgcctcca ggctacgtgg gctatgaaga aggtggcgaa
     6241 ttgacagaaa aagttcgtaa caaaccttat tctgttcttc tttttgatga ggttgaaaag
     6301 gctcatccag atattttcaa tgttctcttg caggtcttgg atgatggtgt cttgacggac
     6361 agtaagggac gtaaggttga tttctcaaat accattatta tcatgacgtc aaaccttgga
     6421 gcaacagccc ttcgtgatga taagacagtt ggttttggtg cccttgattt gtctaaggac
     6481 cacaaggaag tggagaaacg catttttgag gaattgaaaa aggcctaccg tcctgaattt
     6541 atcaaccgta ttgatgaaaa agttgtcttc catagtttga ccgaatccga tatgcaggat
     6601 gttgtcaagg tcatggtcaa accgttgttt gcggtaacag ctgagaaagg aattactctt
     6661 aaactgcaac cgtcagccct taagttattg gctaaacaag gttacgaccc agaaatgggg
     6721 gctcgtcctc ttcgtagact cttacaaacc aaattggaag atccgttggc agaaatgttg
     6781 ctccgtggtg acttggctac tggttcgacc ctgaaggttg gggtcaaggg tgaagagctc
     6841 aagtttgatg tggtaaaggg ataaggagtg cttgttgttg ctatcctttc cagatgcaga
     6901 attattcttc cgttttgaaa aacgcatgaa atagttggag aggtgagctt gctcgcctct
     6961 ttaacgatta gaaaggaaat ctatgaatca aaccatagct gttgttttcg gaacttttgc
     7021 ccccatgcac aagggacact tggatttgat tgaacgagca aagttagctt gcggtcaggt
     7081 ttgtgtggtg gtttcaggct atgataggga tcgtggggat aggataggtt tagacctgac
     7141 caaacgattt caatttgctc aagagcagtt taaggaagat gattttgtcg aagttcgtgc
     7201 cctggatgaa acggacttgc ctccctatcc agatggctgg gacctttggt tagaacgcct
     7261 gcttggttta ttggacttgt cagaacatca agtaccagtt ttctatgtgt ctgaggaaga
     7321 atacgctcag gaactgcata ggcgaggcta tcaagcccat tatagtccta gaaaatttgg
     7381 tatttcagcg accctcattc gtgaacatcc tcaacaatat caggattaca ttgctcctgc
     7441 ctttcttgct ttttttggaa aggaaagact gtaaaacaac atagaaaaaa agcataaaat
     7501 caggttacag cctaggtttt atgctttttt tactacggat ttttacggaa attccatgta
     7561 ttctaacgaa cgttcgtaaa tgtcttgtat atatgcaaaa aaattcaaaa ttttttgact
     7621 gttttaattt tatttgttac tatatactca taaaaaaagg aggtggttct tatgaaaaag
     7681 aatcttttga aaaaaacgat cgtttgtttt attaacttgc ttgttgtgtt gatggcagtt
     7741 gctccaccag cagtgtctgc tcaagctgct agtcgaatcg aaacacctgt tgaaacaaaa
     7801 tcgaagcatt tttcgaattt agaaggtggt ggagatttat cctatattaa cctttctggt
     7861 tattcaaata gattcggaac agcggcatct ggtagatctg gtacatattt cggaccaaga
     7921 ggaacttatg tgactagaga ttggtctgtt aattctggag gaggatcaca tggaggaagt
     7981 tattggaagc tatttaatcg aaatggtcaa cgaataggta catatgacaa gtatggaaat
     8041 tacctacgtc catagtaaat aaactaggag aaatatgcaa attattcaat taaataattt
     8101 tgaaattaag atttcagaaa gattacactc tatttatgat ggcaaaaaca agatattagt
     8161 tatctttcca gaccataccg caatctgctg tcaggtaaaa ctttctcaag caggcggact
     8221 cttggtagat acattttggg gtgtggaata tgagatttca ggcaacatgg taactatcta
     8281 ttacacggat gaggaggaat tggaatgaaa cagtatttat ttagacagca tactatccat
     8341 gttcatccaa gtttaaatgt tttcatcgga aatgatgaag cagaaatggt tctctatagc
     8401 aaagaaccag atttcacact tttagccttg ctaagatggt taccagataa aaattctatt
     8461 cgtattatta accgttggaa attaacctat gaatacgacg gtaacaataa tatctacatt
     8521 cattatgatt ccgactatcg ttactaaaaa taagagttga ggttctaatc tatagaaaaa
     8581 acgcataaaa tcaagttatc atcttggctt tatgcgtttt tctatttcat tgttggcgag
     8641 ctttaacctg ccagtttatc ttatttagca atccgttcct gataggcttc tcgtgcttgg
     8701 tcaaagagtt cttggacctg ctcgatagtc tctgctcggg caacagcacc acggattttg
     8761 gcagcgcctg ctgaaccacg gaggtagtga ggggcaagac cacggaattc acgtacggca
     8821 atggactcac ccttaagatt ggtcaatcgg gtcaggtggt cgaaggcgac attgagtttg
     8881 tcgtcaaagg agaggtcggg taggacttct cctgtttcaa gatagtgatt gatttggttg
     8941 aagatgtatg gatttcccat agcagtccgt ccgaccatga cggcatcagc tccgacttct
     9001 tcgattcgct ggcgggcatc ttctacagtg cggatgtcgc cgtttgcgat gaagggaatc
     9061 ttggtcaggc tgccagctac cttggtgagg gtttccaggt caacggttcc tgtgtacatc
     9121 tgctcgcggg tccgtccgtg catggctagg gcagacacac cggcactttc tgcggccagg
     9181 gcgttttcga ccgctaggtc ggtattgttc caaccggtcc gcatcttaac ggtcagagga
     9241 atgtcgagga ccgaggtcac ttccttgatg atgtggtaga tcttgtcggg atccttgagc
     9301 cacttggcac cagcctcgtt cttgatgacc ttgttgacag ggcagcccat gttgatatct
     9361 acgatgttgg ccttggtgtt tttctggatg aagtcggcgg cccgtttcaa cccttcggca
     9421 tcaccaccga aaagttggat ggacataggg tattcgttgt cgtcgatatg gagcatgtgg
     9481 agggtcttct cattattgta gagaaggcct ttttcagaaa tcatttccat tacgaccaga
     9541 ccagcgccca tttcttttgc aatggtacgg aaggccgagt tggtcacgcc agccattggg
     9601 gccagcacgc atcgattggg gatttccaca tcaccaatca tgaaaggggt attgagatta
     9661 gccattgatg agttcctcca aatcgttttc gtcaaagtgg taatgggtct ggcagaattg
     9721 gcaggtaatg tccacaccct tgtcttcttc cttcatctct tgcaggtccg tttttggcag
     9781 actagccaga gcatctagga agcggtcttt agagcagtcg cagacaaagc cgatttcctc
     9841 ttctgacagg cgtttgaagt cgtcgtcgcc ataaatggcg gatagcagag cttctatgtg
     9901 gttttcagaa gctagcaagc ttgaaatggc aggcatttct tggatgcgtt tctcgaaacg
     9961 ggcaatttca gcctcggtcg cacctggtaa aacttgcaac aagaatccgc cagctacctg
    10021 gaccttatct tcctcgtcca gcaatacatt gagccccacc gcagatggtg tttgctggct
    10081 gtctgtcaag aaataggcaa aatcttcacc tatttcacca gagattaagg gtgtcatgga
    10141 gttgtaaggg tgacctgttc cgtagtctgt gataaccagg aattgtccgt tccctacaag
    10201 aggcccaacg atgacttcgc cagtcgctgt tcgtttgtaa tccaagtctg gattttgaat
    10261 gtagcccttg acctgacctt tggtattggc aacggagatg atagccccaa cagcaccgct
    10321 ggccaagatt ttcagggtga tcttggtgtc gcctttttca ttggcagcca agatctgatt
    10381 ggcaatgagg gtgcgaccca gagcaacggt ggacgacgcc atggtgttgt gtttttcttg
    10441 ggctgttttc acggtttctg tgctatctag cacaaaggca cggaaatgcc cgctttttga
    10501 tagtgtttta ataattttat ccataacttt aattatagca taagtggagg tggagcagta
    10561 gaaaaatgag cctgaaagtc atgctttcaa gctcaaaaaa tgattaggat tctttttgtt
    10621 ttttgacaag acaggcgatc aagaatacga gaccgattgt gataagtaca aagcttgttt
    10681 ctcctcctgt ctttggaagg attttctttt gactgttgtt ggcagtaggg gtcacggttg
    10741 tttgtccctt gtctgtagcg ccagaacggt cattagcatt tacagctgtt tgattagaag
    10801 ttgaaagatt tgttggcttg ttattgttgg tcgtaccatt gtcatcacta ttattgactg
    10861 ttcctgagtc atctgtctgc ttgtcgcttg gttctggttg agttggttct tgtgcctttg
    10921 tcacatccag ttgtaccaat agcggatcgt ggtcagaagc tctgccatgt tcttccataa
    10981 aggctgaatt gacatggacc atatcaaagg catagcggtc caacaagtta gttgatacta
    11041 gcatattgtc aagagactga ttgtttccgt tatagaagta agagaagcga tcggatgcat
    11101 cgtgacgact aacgaggtta gccattcctc ctgtttctaa aatttctatg gttttagtaa
    11161 attcatagtc attgaagtcg cctagcataa cgatattagc atttggattt tgagctaagc
    11221 ctgcttttgt gaagtcagcg ataatttgtg ctagtatgtg gcgtttttct tcggacttga
    11281 agctgacagg ttggattttt ccgtagagac cattgtcacc gcgttttgag ttgagatggt
    11341 tggcaagaac aacgactttc tcgcctttga agacgaattc agctgcaagg gttttgcgga
    11401 cagctgccca agcagggttg gttgggtcga ttcgacccag gctgagattg agttcgccat
    11461 tttcccatgc aactgcctgt gttgcggtac cgattggttt gtcagatagg ctgacacgtt
    11521 ttgagttgta gaggaagccg acgcgaatat tgcctccctc ttgtccgccg tctttgttgt
    11581 tttcaggagc aatatccaca taggtatagg ttggtccgcc ggctgcttga atggctgcaa
    11641 tcaggcgttc agcactctta ctagcatcag ttgtgccgtc atttgtagca ccgttgttgt
    11701 cctgcacttc aatcaatccg ataatatctg gagaatgtag gtctgaaaca aaggatttgg
    11761 caatgcgttg gactttagcg tctgatgttg acttactatt agcagagaag ttttcaatgt
    11821 tataagaagc gatagtcaac ttgtcatcat ttgggataat ggttgttgtt tctggttttg
    11881 tagctccttc gtgcaaggtt ggaagggtgc tatcatctac atagacttta taattggtgt
    11941 aagagtaggt gactggtcca gcgatacgac cggtgaagta gtctcctgat ttgacaatct
    12001 gttttccatt tttcaaaaga agtggaatga tattggtatt attcccttca gggcgaaggt
    12061 tgacgcctcc aacgttattt aaaggaagtt gactagtggc tggagtgaca tagatttcct
    12121 tgttttttag tgggccaagg atttttgcat catcaacggc aaccaccatg ccttcaacgg
    12181 attcccagaa atcgagcgca tcttgttctg gatcaaattg agccaaaccg tcgttgtcaa
    12241 taatatctgc tgggatgctc cgatcaagac caaggactat aggagatggt acaggtgcag
    12301 tcccatccac agttacttca gtagctcgaa tttgtgtgat ggttaagtct gttttgtcac
    12361 gttcagcata ccctctgccc tggtattctt ctactcgtcc tgcgacagtg acaagatctc
    12421 ctaccttgac atttgttttt aatttgtcag taaaaatatt aataccgtca gatgttttga
    12481 cgtctccatc tggtgtgaca tcttgcacgt agaagttatt ggcagaggta acgtaggtta
    12541 ctacgacatt tttaagcata acagattgat tggttagagg tgattggtga cttgcacctt
    12601 gaatgcgacc gactgttaca gcttcggtct ttcctgtctc tgcttccgtc gttgcctttt
    12661 caatgacttc aaaatgagag aggtcaaatg gttttaattg tatttttccg ttataggtgg
    12721 ataaaatagc ggttagatta atcttatctc ccttgttgat ccggttcaaa agatccgccg
    12781 ttttgatgcc tgttcggcta tctaagcgta catcaacagt ttgtccttcg gagtcagtta
    12841 cggtaaaggt agaattttga tagctatcgc tttgaatatc tccgacagtc aagtttttta
    12901 gagaaactag tgttgcctgt gcttgcgttg ctaactgagc gatgtttgtt tctgtaatag
    12961 gagtgttgaa attctcagag atagccttgt ggttgctaac tgtggttagt tggagttcgc
    13021 ctttatactc acccaatgtt cctgttaatt ggactgtatc accaggctga tagcccaagg
    13081 cagcccctgg gtagatatag ataccagcac cgtcagaacc ctggaggtaa aaaccatttc
    13141 ctccccaacc gtttactagg ctaataattt taccagaaac tgtgtactct gttccttgtg
    13201 ctccggaacg aacagtagca atcggtatag aaacaaggtc acttggtttg gtagctgtat
    13261 tttcacttgt tggtggctga acattagtag aagatgaatc tacaatttca atcgctgtag
    13321 ctggcttgat cccagctcgc ttcatgtatg tatcgctagt tcctgtgatg cgaaccaatt
    13381 ttccgactag ttcgggatga tcaacgaggt tgaattggct acgaagaggt tcttttagtt
    13441 gaatagggat agtgtcggcg gccgcagtat ccatgcttgc accaagggct agatttgttt
    13501 tgttagtggc gtcaaaagca gttccgctac tattaagtgg tgcaataaga tagccttgta
    13561 tcgtgacttc cgacttggtt attgcaagtg acggataatt ctctatcgcc acttcagtag
    13621 cgtgcacaga tggtatgggc gaagtagcaa gactaagcaa gagtccggct gttaccgcta
    13681 cagaacctac ggtatagaag agagaacggt ttctaatctt catataaaac tcctttttgt
    13741 tatatatgga cgtcataaaa acgtctgca
//
LOCUS       DASGBY010000049        13757 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.049, whole genome shotgun sequence.
ACCESSION   DASGBY010000049 DASGBY010000000
VERSION     DASGBY010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13757
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.049"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(101..670)
                     /locus_tag="U1396_001065"
     CDS             complement(101..670)
                     /locus_tag="U1396_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002925829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM5342261.1"
                     /translation="MELPMTQAFFPIHTLETVSPELRENLATVKKNNGGYIPNLIGLL
                     ANSPTALETYQTVSGINRRSSLNPTEREVVQITAAVANGCGFCVAGHTAISIKQVKMP
                     DVILQALRQGTPIETDAKLDALARFTLAVIHEKGKVEQPLLEEFFQEGYTAENALDVV
                     LGVSLATLCNYANNLINTPINPELQAYAL"
     gene            complement(824..1519)
                     /locus_tag="U1396_001066"
     CDS             complement(824..1519)
                     /locus_tag="U1396_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5342262.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHIEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMEERLGMSGEDICYLGDSFENDVVGAKAANWKAIWFNHRKRVEPTAPYQADKVV
                     TDWDELVEVIQSF"
     gene            complement(1573..3312)
                     /locus_tag="U1396_001067"
     CDS             complement(1573..3312)
                     /locus_tag="U1396_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342263.1"
                     /translation="MTILGFLLKQIRRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSAQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     YGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEEVEDDCDRIL
                     EVEQGQVVFEHVNFSYEENRPVLKDITIRAEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            complement(3312..5039)
                     /locus_tag="U1396_001068"
     CDS             complement(3312..5039)
                     /locus_tag="U1396_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342264.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEMTLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLCIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKATQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENIALGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            complement(5608..5680)
                     /locus_tag="U1396_001069"
     tRNA            complement(5608..5680)
                     /locus_tag="U1396_001069"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5645..5647),aa:Thr,seq:ggt)
     gene            5837..6307
                     /locus_tag="U1396_001070"
     CDS             5837..6307
                     /locus_tag="U1396_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEM5342265.1"
                     /translation="MKLQNLQVGQSYLVKDCLTQDDIRKHLAHLGLKVGEEIRIISKT
                     KTNAIFQVKASRLALDREIIESLVLTEKSATEIINLSEAPIGSSAKVMDIYATGALRR
                     RLMDMGLTKNTQLFLKKVAPLGDPIEITLRGYELTLRKSEAQMIGVQITSEVRK"
     gene            6304..8448
                     /gene="feoB"
                     /locus_tag="U1396_001071"
     CDS             6304..8448
                     /gene="feoB"
                     /locus_tag="U1396_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEM5342266.1"
                     /translation="MTKHIALAGNPNSGKTTLFNLLTGTNQRVGNWPGVTVERKSGTI
                     KKRKHLLIQDLPGIYSLSPYTPEERVARDYLIADQPAAILNVLDATNLERNLYLTLQL
                     LEMGLPIAIALNMTDALKSQGRSINSDQLSYQLGVPVQPISALKKLGISQLLHEVEKI
                     TNQQAEPIYPQYDKQFEAGLAQVIDLLSDSIPNHQKRFYAIKLLEQDQVILDQLQLNA
                     QDMLDLTEIIAILEKIYADDMEAIIVNQRYQFIEKITELVTKDSDKAFNLSDNIDRLV
                     TNRFLALPIFAAVMWLTYFLSIQTVGTMGTDWVNDVLFGELVPGLIQANLDRFEIAGW
                     LQSLVLDGIIAGCGAILGFVPQIFVLFVCLGILEDIGYMSRVAFVMDRIFRRFGLSGK
                     SFIPMLISTGCGVPGVMASRTIENEQDRKITIMTATFMPCSAKLPIISLVAGAFFPDN
                     PWIAPSAYFVGMAAIVLSGMALKKTKQLGGVASPFIMELPSYHLPKLSTVLRYAFDKA
                     LSFIKRAGTIIFVTNIIIWFSSSYNWSLQMVETDESILASIGHSFSLLFAPLGFGNWR
                     ATVAAITGLLAKETVIATFGILYKLGETTEENPELWGLLQQDYTALSAYSFLVFNLLC
                     APCFAAIGAIHREMGEAKWTWIAIGFQTGLAYASSLVIYQIGLVLIHGQLPTVWTFIA
                     IFLIITAIYSLVKKPTNTLPIVTLKTLEKGEY"
     gene            8448..8600
                     /locus_tag="U1396_001072"
     CDS             8448..8600
                     /locus_tag="U1396_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HEM5342267.1"
                     /translation="MPTLILFLIIVILFSLAIRSLIKGKGSCGDCSCDCTIKQEMNES
                     SHHRHP"
     gene            complement(8653..9582)
                     /locus_tag="U1396_001073"
     CDS             complement(8653..9582)
                     /locus_tag="U1396_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342268.1"
                     /translation="MSNRFFRHFIESLKSLKRNGWMTIAAISSVAITLTLVGLFASVI
                     LNTAKLASDLEQNVRINVYLRANSTDQAETIVNEAGETVANPDYKKVYNQITALENVQ
                     SVTYSSKDEQLQKLTATLGDTWNLFQGDANPLYDAYIIDTTEPQYVKTVAAEIAKIDG
                     VTEVRDGEVETERIFKLANLVRTWGLAATGLLLFTAVFLISNTIRITIISRSREIQIM
                     RLVGAKNSYIRGPFLWEGAWVGLLGAILPSALVYSFYKMIYTSVNASLASQDLSLISM
                     DVFVPGMIGALFVIGIIIGSLGSVISMNRYLKI"
     gene            complement(9575..10267)
                     /gene="ftsE"
                     /locus_tag="U1396_001074"
     CDS             complement(9575..10267)
                     /gene="ftsE"
                     /locus_tag="U1396_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012130521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEM5342269.1"
                     /translation="MGIIEMKDVSKKYGNGTTALRGVSVNVEAGEFAYIVGPSGAGKS
                     TFIKLLYREEKLDKGSLKVGKFDLAKIKKRDVPLLRRSVGVVFQDYKLLPKKTVFENI
                     AYAMEVIGEKPRNIKKRVMEVLDLVGLKHKIRSFPNELSGGEQQRIAIARAIVNNPKV
                     LIADEPTGNLDPENSWEIMNLLERINLQGTTILMATHNSQIVNTLRHRVIAIEDGRVV
                     RDEAEGEYGYDE"
     gene            complement(10410..11505)
                     /gene="prfB"
                     /locus_tag="U1396_001075"
     CDS             complement(join(10410..11432,11434..11505))
                     /gene="prfB"
                     /locus_tag="U1396_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775232.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEM5342270.1"
                     /translation="MDTAEIRQKIEELGKKLTSFRGSLDLEGLEEEIAILENKMTEPD
                     FWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLDFLAEDESVRDELVEKLVE
                     LDKTMTAYEMTLLLSDPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNAKGFIV
                     ETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVE
                     VMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDRT
                     QYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWGSQIRSYVFTPYTMVKDH
                     RTGYEVAQVDKVMDGDLDGFIDAYLKWRIS"
     gene            complement(11540..12667)
                     /gene="queG"
                     /locus_tag="U1396_001076"
     CDS             complement(11540..12667)
                     /gene="queG"
                     /locus_tag="U1396_001076"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEM5342271.1"
                     /translation="MNIKEEIIKLSQEIGISKIGFTTADDFAYLEKSLRASQEEGRSS
                     GFEHKNIEERIRPKLSLESAKTIISIAVAYPRHLPVKPQKTQYKRGKITPSSWGLDYH
                     YILQDKMERLARGIEKLTDGLEYKAMVDTGALVDTAVARRAGIGFIGKNGLVISKEFG
                     SYMFLGELVTNLDIEPDQPVDYDCGDCNRCVAACPTSCLLGDTTMNARRCLSFQTQDK
                     GMMDLEFRKKIKTVIYGCDICQICCPYNKGISSPPVVEIDPDLAEPELIPFLDLSNGQ
                     FKEKFGMIAGSWRGKNILQRNAIIALANSNDRSAIPKLLEIIDKKQNPVYMATAIWAL
                     GQLVKQPNDEMVSFIAGISSDNDDVIAEQTAFLNMVKDLQM"
     gene            complement(12708..13196)
                     /locus_tag="U1396_001077"
     CDS             complement(12708..13196)
                     /locus_tag="U1396_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5342272.1"
                     /translation="MQTKKMSIFLFFAYLLLLTWMIVFKMDLSIVYGRYGYASINLIP
                     FAGTAVYDGVLDFPEILFNIVSFIPFGIYMEMLFRKASWVANLCLIMLVSLCFEVLQY
                     LLLLGVADITDLLANGLGGAIGINIMYVLTSIWREKAYVRMNIFCFVLTFFVILITYL
                     AM"
     gene            complement(13365..>13757)
                     /locus_tag="U1396_001078"
     CDS             complement(13365..>13757)
                     /locus_tag="U1396_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEM5342273.1"
                     /translation="LSKSSYLPSDKLFILQKELEDLDNEALNVLMMVEMHQPLVALIL
                     AIFFGEFGVDRFYVGNKELGFAKLIAFAVSFVTLFILIGFLLFLGLYLWKFIDCFLIM
                     RACKEANFERLMLQIHQYKAFQHSNQTF"
BASE COUNT         4220 a         3210 c         2416 g         3911 t
ORIGIN      
        1 aaatgtatat taggaaaatc acacttggtt aattcaaaaa aactagttag gataatgtaa
       61 acgtcctaac tagtttgcga tacatattct gctggaactc ctacagagca taggcctgta
      121 attctggatt gataggagtg ttgatgagat tgttggcata attacaaaga gttgcaagac
      181 tgactcctaa caccacatcc aaggcatttt cagccgtgta gccctcttgg aaaaattcct
      241 ctagcaaggg ctgttcaacc ttgccttttt catggataac agccagagta aatcgagcga
      301 gagcatccaa ttttgcatcc gtttcgatgg gagttccctg gcgtagagcc tgtagaataa
      361 catcaggcat cttaacctgc ttgatagaaa tagccgtatg acctgccacg caaaatccac
      421 agccattggc aacggcagct gtaatttgta ccacttcacg ctccgtcgga ttcagactac
      481 tacggcgatt gataccacta acagtttggt aggtttctag ggctgtagga gaattggcta
      541 aaagaccgat gagattagga atataaccgc cattattttt cttgacagtc gcaaggtttt
      601 ctcgtaattc tggactaaca gtctctagag tatggatagg aaagaaagct tgtgtcatag
      661 gtaactccat ttcaaaaaat ttcatagagt aggaataaaa atctgcttgg attcacacct
      721 atacttctat gcttgcattt tatactatca taaagacagg catcctgcta atatatttta
      781 cctatcacac ctataaaaaa ttgataatcc cttgtagaaa ccactagaaa gactggataa
      841 cttcgaccag ttcatcccaa tctgtcacca ctttatctgc ctgatacgga gctgttggct
      901 ctactctctt tctatgatta aaccaaattg ccttccaatt cgcagctttc gctcctacca
      961 catcattttc aaacgaatcc cctagataac aaatatcttc gcctgacatc cccaaacgtt
     1021 cttccattag ttgaaaaata gcaggatttg gctttgtgat accaacttgt ccagaaatta
     1081 ggacatgttc tagctcaaac caattaacta accccatcgt gcgtatcttt ctcaactgat
     1141 gtctataagg tccattcgta ataatcccca ttgcaattcc ttgcgcctga caccatgaaa
     1201 atatttctgg aaacactgga ctgagctcta tctgcccttg aaaataatca taatctattt
     1261 gaatagctaa ggctgttgca tcagacacct gatacccaaa atctgccaaa gcatgtttca
     1321 tccgataaat atgactgtct ttcagactca tctttccaat tgctgtcgct tcaaatactt
     1381 catccgcata tctgcgaaag gaaaggtaga gtggttcaat ttgctccctt gctacttcaa
     1441 tgtgtctttc caaagcacgt tcaaacggtt gaatctgatc ataaagcgta tcatctacat
     1501 caaaaattaa ggctttcatg agtcaattat agcaaaaaat tccagccaaa gcttggaatt
     1561 tttaactgct tattacacct ttgcttgaat ctcatgcatt tgagcatata ctccaccacg
     1621 tgcaaccaat tcttcatgct tcccatgttc aataattcgg ccttgatcta agacaagaat
     1681 ctggtctgca ttttgaatgg tagaaagtcg gtgggcaatg ataaaggttg tccgaccttc
     1741 tttcaccact tccatagcat gttggataat ttcttccgtc tccgtatcaa tatgagaagt
     1801 tgcttcatcc aatatcagaa ttttaggatc agagtagagt gtccgcgcaa aggcaatcaa
     1861 ctgacgttcc ccacttgaaa aggccgcccc cttctcaaca accggttcat caatcccttt
     1921 ctctaagcga gatagcatag gccctgcacc aactttttct aacgcctgca tgattcttgt
     1981 tctatctgct tcctcttcat tcatggaaac attgctagca atcgtccctg taaagagata
     2041 gggatcttgc aaaacaatcc ccatgtgact gcgcaggctc tcacgagaat aatcacggat
     2101 gtttttccca tcaatcagta cacgtccctc ctgtggatca tagaaacgat agaggaggtt
     2161 cataatagaa gacttaccag acccagtatg cccaaccaga gcaactgttt ctcctttttc
     2221 tgcccgaatg gtaatatctt tcaaaactgg tctgttttct tcatagctaa agttcacgtg
     2281 ttcaaacacg acttgccctt gttcaacttc caaaatacga tcacagtcgt cctccacctc
     2341 ttcttctaga agggccatta gacgcttacc tgtttcaaac gagcgaagca tatttgggaa
     2401 ctgttgaacc agcgctccca aagcaatgaa gactccttcg atatagttga cataaacaaa
     2461 gagtttccca gctgtaactc catactgtcc cgcaagaaac tgatagccga ctaccgttaa
     2521 aatcgcagca atgaccaaat tttgaagaaa accactcaga ttccacgtgg caagagactg
     2581 ggcccagata atcttattat ctgcccgacg catcttgtca gcagtcactt caaattcttt
     2641 catgatgcgc tcttcttgtc caaaaagttg aatcaaactt gcaccattca tggtctcatt
     2701 cacctgcgta ttgacgtcac tccttgcatc ataaaaatcc ttcatcggct tgtctgtcat
     2761 tttcttgtaa gcaaattgaa taccgatata gagtggtatc aagagtaaca tcagccaacc
     2821 aagactccta ttcatgtaaa ataggacacc gtatgtaaag agcaaacgaa caatattgtt
     2881 aaaggcatta actaaggtcc cataaaattg tgtccgcaga gtttctgtat cattgacaat
     2941 tctagttgca atttttccag cgggcttatc atcaaaataa gaaataggca accgttgcat
     3001 aacatcataa gcttgattac gtagattttc agcaatacga ttggcgcaat gcatgagtag
     3061 acgcatagat aagtagaagc caatagctcc cagaataatc attcccatgt attgagctga
     3121 ctggtttaag aaaacagctt catcaaaagg caaacccttg ctcaaatccg taatcggccc
     3181 atcaatcgcc tgctgaatca gtagaggagc caatcgaacc atggtcgaag ccaatagata
     3241 gaagccgaca gctactataa atagccactt aacacgacgg atttgtttta ataaaaaacc
     3301 taaaatagtc attactctcc tccttcctga ctttgttgtc gttggtattg ttcatagtac
     3361 caacctcttt gggcaagcaa atcagctgga cgcccttcct caacgatacg cccctcatcc
     3421 aagactagta cccagtctgc atggttgaca gcagatagac gatgggtcac gatgacattg
     3481 gttttgcctg cacgttcttt ttgaatattt tggataatct ggcgttctgt cctagcatcc
     3541 actgccgaca aagaatcatc tagaatcagc aaatctggct ctcgcaggaa agcacgggca
     3601 atggaaatcc gttgtttctg accgccagaa atagacacac cacgctcacc aatcatggta
     3661 tcaagaccat cagtcatccg ttttaaatct tgactaaaag ctgctgtggc aatggcttgt
     3721 tcaatctcct cagagctact agctactttc ccaagggcaa tattttctcc aacagacctt
     3781 gaaaacaaaa tgtgttcttg gggaacatag ccaatttttt cctctatact agaacgttta
     3841 aagtctaaaa cagattgatg attgatgaaa aaatttccct gaccaatcgg atactggcgt
     3901 aagaattggc gaaccaaggt cgtttttccc gaaccagttt tcccaacgat acctacagtt
     3961 tgccctgctt tcagtgtcca attgatgtcc tgtaggctgg ctctttccgc ctgtggataa
     4021 ctaaagctat aatttttgaa ggaaatacta gacagctctg caatttcctt agaaccatca
     4081 gcctccaaat catcacccgt ctcaatcagc tcttgcagtt tttcgaaaga tgtcttacca
     4141 gtctgataaa caaggatgaa atctgccagt gtccaaaacg gctccaaaag cgaaccgaca
     4201 tacaattgaa gggcaattac ttgtcccaag gtcagttgcc ctgctttcac ggcttgtgcc
     4261 cccatgagaa gcacgaaaat agtagacaat cccaaacaga ctgtggctaa tggattatac
     4321 aatgattgca aggaagtgat gcgatcccca ccttgagcca attgcttggt acgagcttga
     4381 aattgagcct tttgagttgc ttttttacta taagcccgag tcactcgaat gccttcgatg
     4441 acctccaaaa cttcattatt gagctgggct acagcttctc tattggcatc aatcgcctta
     4501 tcttgttttc tcccgataaa aaatatacat agtgtcatga acagcatcgg tagtaaagct
     4561 actagcgaaa ttttccaatc aataaagaac atcgtgggaa tgataaaagc caacataccg
     4621 cctgcataga cgacaatcat aagaccgtaa cccaccatct ccatcaggcc atccacatcc
     4681 gttgaaaaac gagtcatgac atctcctgag cggaattttt cataaaatgg agtccgcatg
     4741 gtcactaatt ttttaaaggc acgttgctgc atatcaaact tgaaattgac agaagcctga
     4801 aataatttca gatgccaaat gaaggctgtt gcatagttca gtactgttac caataacaat
     4861 aaggtcatct cctgaaccaa tatggcctgt gttaattcat tcttggttag tatatctacc
     4921 atccgctgaa tgatttgcgt tggtagcaaa agtgtggcgt cataaataat caaggtcaca
     4981 gcaaccaata gatagagcca cttatgacgc ttgatatagt caaaaattaa tcgaaacata
     5041 tatctccttt acaaatctat aacctatcat ttgccgcttt attcaataag caacaattga
     5101 tagacgttat actcaatgaa aatcaaaagt agcctagaaa acgatgtcga agatagaact
     5161 ggagttcatc aaggcaagtt gacaacggat aattttgatt ttcgaagagt attacctttc
     5221 taagcgcaca aaaaagccta gggaagcatc tcactccacc taggcttgcg taagtccaca
     5281 aaaatagacc agctcttgaa catagtcgac aatttttatc acaccatacc cacagtgctt
     5341 gattgtctca atgtttcaaa atatagccca cgaaaaacga caaaagttca tcaatgagct
     5401 ttgttttcct gcttagaaag gagtgtatga taaaaaatag cttgctgaat aacaagttgc
     5461 ttgttcattt gttttactcc tttcatattt ctaagcccta ttctaccata ataaacattc
     5521 atgtcaaggg attttttgac aataagggcg aatttaggac aaaaataaga aaaaccttgt
     5581 caaacaaggc ctttcgatag tattttatgc tagttgccgg gattgaaccg gcgacctcat
     5641 ccttaccatg gatgcgctct accgactgag ctaaaccagc agtacttgac tagtatatca
     5701 tatctctaaa aaaagtcaat ggattttttg gaaatattga gaaaaataaa gagaaaataa
     5761 gccattccta aaaattgtct gacactttta aggaattgtg ctatactatt gttataaaaa
     5821 tcacaaagga aacgatatga aactgcaaaa ccttcaagtt ggacaatctt atttagtcaa
     5881 agattgccta acgcaagatg atattcgtaa acacttagcg cacttgggtt taaaagtcgg
     5941 agaagagatt cgcatcattt caaaaaccaa gaccaatgca attttccaag tcaaggcaag
     6001 ccgtctagcc ctagacagag aaattattga atctctggtt ttaacagaaa agtcagctac
     6061 ggaaataatc aatctatctg aggcacctat tggtagctca gccaaggtca tggacatcta
     6121 tgcaacaggt gcactccgtc gtcgcctcat ggatatggga cttacaaaga acacacagct
     6181 atttctcaaa aaagtcgctc ccctaggcga tccaatagaa attaccttga gaggatacga
     6241 gctgacacta cgcaaatccg aagcgcaaat gattggtgtt caaatcacaa gcgaggtgag
     6301 gaaatgacaa aacacatcgc ccttgcagga aatccaaata gcggaaaaac aactcttttc
     6361 aacctcctaa caggaaccaa ccaacgtgtt ggtaactggc ccggagtcac cgttgaaaga
     6421 aaatctggaa ccatcaaaaa gcgaaaacat ttactaattc aagatttacc aggtatctac
     6481 tcgctgtctc cctacacacc agaagaacgg gttgccagag attatttgat agcggaccaa
     6541 ccagctgcta tcctcaacgt ccttgatgca acaaacttgg agcggaatct ctatctgacc
     6601 ttgcagttat tagaaatggg ccttcctata gctatcgccc tcaatatgac agacgccctg
     6661 aaaagtcaag gtcgctcaat aaacagcgac cagctctcct atcaactggg agttcctgta
     6721 cagcctatca gtgcactaaa aaaactaggt atatcccagc tcctccatga agtagaaaaa
     6781 attaccaatc agcaagccga gccaatctat cctcagtatg ataagcaatt tgaagccggt
     6841 cttgcccaag ttattgacct attatcggat tccatcccaa atcatcaaaa acgcttctac
     6901 gccattaagc tactcgaaca agatcaagtc attctagacc aattgcaact aaatgcacaa
     6961 gacatgcttg atttgaccga aatcattgcc attttggaaa aaatttacgc agacgatatg
     7021 gaagccatta tcgtcaatca acgctaccaa tttatcgaga aaatcacaga actggtcaca
     7081 aaagacagcg ataaggcttt taacctgtct gataacatag accgacttgt taccaatcgt
     7141 tttcttgccc tccctatctt tgcggcagtc atgtggctga cctacttcct gtctattcaa
     7201 acggtaggta caatggggac tgactgggtg aatgatgtcc tcttcggaga gcttgttcca
     7261 ggccttattc aggcaaatct agatcgattt gaaatcgctg gctggctaca atctctggtc
     7321 cttgatggca ttattgcagg atgcggagcc attctaggtt ttgtaccaca aattttcgtc
     7381 ctcttcgtct gcttgggaat cttggaagac atcggctata tgagccgagt cgcctttgtc
     7441 atggatagga tttttagacg ttttggtcta tcaggcaaat cctttattcc catgttgatt
     7501 tccacaggct gtggcgttcc tggagtcatg gcaagccgga ctattgaaaa tgaacaggac
     7561 cgaaaaatca ccattatgac agcaaccttc atgccctgtt ctgccaaact tcctatcatt
     7621 tcactggtag ccggtgcttt ctttcctgac aatccttgga ttgctccaag cgcctatttt
     7681 gtcggtatgg ctgccatcgt cctatccgga atggcactaa aaaagaccaa gcaacttggt
     7741 ggagtcgcaa gcccctttat catggaatta ccatcttatc acttaccaaa actcagtacg
     7801 gttctccggt atgcattcga taaggcactt agttttatca aacgagctgg taccattata
     7861 tttgtgacca acatcattat ttggttcagc agttcctata attggtcttt acaaatggta
     7921 gaaacagatg agagtatctt agcctccatt ggacacagtt tttctctcct ctttgcccca
     7981 cttggtttcg gaaattggcg agcaactgtt gcagccatta caggtctctt agccaaggaa
     8041 accgtcattg ccacctttgg tatcctctat aaattaggag aaacaaccga agaaaatccc
     8101 gaactatggg ggcttttaca acaagactat acagcgttat cagcctactc cttcctagtc
     8161 ttcaatctcc tctgtgcccc ttgttttgcg gctattggtg ccattcaccg tgaaatggga
     8221 gaagccaagt ggacatggat tgctatcggt ttccaaacgg gtttagccta tgcaagtagt
     8281 ttggttatct atcagattgg tcttgtactt atccacggac aattaccaac cgtctggaca
     8341 tttatcgcta tctttctaat tatcacagcc atctacagcc tagtgaaaaa accaaccaac
     8401 actcttccaa tcgtcacgct aaaaacatta gaaaaaggag aatattaatg cccacactta
     8461 tcctctttct catcatcgtc atcttatttt ctcttgcgat tcgcagtctc atcaaaggaa
     8521 aaggatcctg cggagattgt tcctgcgact gtactattaa gcaagagatg aacgaatctt
     8581 ctcaccatag acatccataa caaaaaggtc tgcctcatta ttgtgcagac ctttttacat
     8641 gtagcttgtc tattaaattt ttaagtagcg gttcatggaa atgactgatc ccaaggaacc
     8701 aataataata ccaattacaa aaagtgcgcc aatcattcct ggaacaaaga catccatact
     8761 aatcagagac aaatcttgac tagcaagact agcatttacc gaagtataaa tcatcttata
     8821 aaaagaatag actaaagcag aaggcaaaat agctccgagg agacctaccc aggcaccttc
     8881 ccagaggaat ggtccacgga tataactgtt tttagcacca accagacgca taatctgaat
     8941 ttcacggcta cgagaaataa tggtaattcg aatagtattg gaaatcaaga aaacagcagt
     9001 aaagagcaat aagccagttg ctgccaatcc ccatgtacga actagattag ctaatttaaa
     9061 aatacgttcc gtttcaactt ccccatcccg tacctctgta acaccatcaa ttttagcaat
     9121 ctctgctgca acagttttta catattgcgg ttcagtcgta tcaatgatat aagcatcgta
     9181 aagtggattg gcatctcctt ggaataggtt ccaagtatct cccaaggtag ctgttaattt
     9241 ctgtaactgt tcatccttac ttgaataagt gacagattgt acattttcta aggctgtaat
     9301 ctgattatac acctttttat aatctggatt agctaccgtc tctcctgctt cgttcacaat
     9361 cgtctcagct tgatcggttg agttcgctct caaatacaca ttgatgcgta cattctgttc
     9421 caaatccgaa gcgagctttg ctgtgttcaa aataactgaa gcaaatagac caaccaaggt
     9481 aagggtaatg gctacagatg aaatggctgc aatcgtcatc caaccatttc gcttcaaact
     9541 cttcaatgac tcaataaagt gtctaaaaaa tcgattactc atcgtatcca tattctcctt
     9601 ccgcttcatc acgtactaca cgaccatctt caatcgcaat aacacgatga cgaagtgtat
     9661 ttacaatctg actattgtgt gtcgccatca aaatcgttgt cccctgtaag ttaattcgct
     9721 ccaatagatt catgatttcc caagagtttt cagggtccaa gttaccagtt ggttcatcag
     9781 caatcaatac tttaggatta tttacaatgg cacgggcaat agcaatccgc tgttgctcac
     9841 cacctgaaag ttcatttggg aaagaacgaa ttttgtgctt caaaccaacc aaatctaaaa
     9901 cttccattac acgtttcttg atattccgtg gtttctcacc gataacttcc atcgcatagg
     9961 caatattttc aaagacagtc tttttaggta agagtttgta atcttggaag accactccta
    10021 cactacgacg tagaagagga acatctctct ttttaatttt tgcaaggtca aacttaccaa
    10081 cctttagact ccccttatcg agcttttcct cccgatacaa gagtttgata aaggttgact
    10141 tacctgcacc agaaggacct acaatgtagg caaattctcc cgcttcaaca ttgactgata
    10201 ctccgcgaag ggcagtcgtt ccgtttccat atttcttgga aacgtctttc atttctatta
    10261 ttcccatagg atttcctgtc ttagacagtc ctttctttag atttgagaac gtttttttca
    10321 aaatacagtc cgtattctct aaaaaaactt ccttgatgag cgaaaaacta tctcttattt
    10381 acaagcactt cacttgtaaa tacaggttct tagctaattc gccattttaa ataagcatct
    10441 ataaagccgt ccaagtctcc gtccataacc ttatcgactt gagccacctc ataaccagta
    10501 cggtggtctt ttaccattgt ataaggtgta aagacataag aacgaatctg acttccccaa
    10561 gtgatctctt tcttgtcacc cttaagtgag tctacttctg ccgctttctt ctcctgctcc
    10621 aattgataca atttagcctg caagagtttc attgcacggt ctcggtttcc atactgagta
    10681 cggtcaactg tggactgagt cacaatccct gtcggaatgt gcgtcaatcg aacacccgtt
    10741 gaaaccttat tgacgttctg tccaccagca cctcctgacc ggaaggtatc catcttcact
    10801 tcatcatctc tgatttcaat ttcaatggta tcatccaact caggcattac ctccacagat
    10861 gtaaaggaag tatgacgacg cttagctgag tcaaaaggtg agatgcgcac caaacgatga
    10921 acacccattt ctgacttaag caagccatag gcgtttggac cagtaaagct tagagtcaca
    10981 gacttaatac ctgcctcatc accagcttga taatccaatg tttctactat aaaacctttg
    11041 gcatttccat aacgctgata catccgcagg agcatttctc cccagtcttg tgcctcggta
    11101 ccacccgaac ctggatggat ttccaagata gcgttattgt gatcataggg gtctgataag
    11161 agcaaggtca tttcgtaagc agtcatggtt ttgtccaatt ccactaactt ttcaaccaac
    11221 tcatcccgca cagactcatc ttctgctaga aaatctagca aaatttcaga ttcatcatat
    11281 aaatccaaca tctgatggaa atttccataa gtatttttta attcattcaa ctcctgagac
    11341 gtcttctggg ctgccaaatt atcattccag aaatctggct ccgtcatctt gttctcaaga
    11401 atggcaatct cttcttccag accttctaag tcaaagagac cccctaaaag aagttaattt
    11461 tttgccaagt tcttcaatct tttggcgaat ttctgctgta tccatataca cctcattttt
    11521 attcataatc tttattatat cacatttgca agtccttgac catgttgaga aaggccgttt
    11581 gctctgctat gacatcatca ttgtctgatg aaatacctgc gataaaggaa accatctcat
    11641 cattgggctg tttaacaagt tgccccaagg cccagatcgc cgtcgccatg tagacaggat
    11701 tttgtttctt atcgatgatt tctaagagtt tgggaatggc agagcggtca ttgctattag
    11761 ctaaggctat gatggcatta cgctggagaa tatttttccc ccgccaagaa ccagcaatca
    11821 taccaaattt ttccttgaat tgtccatttg acaagtccaa gaatggaatc agctcaggct
    11881 cagccaaatc agggtcaatc tccaccacag gtggactgga aattcccttg ttgtaaggac
    11941 aacaaatctg gcaaatatca caaccataga tgaccgtctt gattttctta cgaaactcca
    12001 agtccatcat ccccttatcc tgggtctgaa aggacagaca gcgacgggca ttcatggtcg
    12061 tgtcacctaa tagacaagac gtcggacagg ctgcaacaca gcgattgcaa tcaccacaat
    12121 cataatctac tggttgatct ggttcgatgt ccaggttggt cactaattct cctagaaaca
    12181 tataggaacc aaattcctta gaaatgacta gcccattctt cccgataaag ccaattcctg
    12241 cacgacgagc gaccgctgta tccaccaaag ctcctgtatc taccatagcc ttgtattcca
    12301 aaccatccgt cagtttctca attccccgtg ccaaacgctc catcttatct tgcaagatat
    12361 agtggtaatc aagcccccat gaactagggg taatcttccc acgtttgtat tgggtcttct
    12421 gcggtttgac aggcaaatgt cgaggataag ctaccgcgat agaaatgata gtttttgcag
    12481 attctaacga cagtttggga cggatacgtt cttcaatatt cttgtgttca aatcctgacg
    12541 aacgcccctc ttcctgacta gcacgaagtg atttctccaa ataagcaaaa tcatcagccg
    12601 ttgtaaaacc aatcttcgag attccgattt cctgagataa tttaataatc tcttccttaa
    12661 tattcattat attcatttta gcaaactttg gatagattta gcaagaccta catagctaaa
    12721 taagttatta atataacaaa aaacgttagc acaaaacaaa aaatattcat acgaacatat
    12781 gccttctccc gccaaatact ggtcaagaca tacatgatat taataccgat tgctccccct
    12841 aagccgttag ccagtaaatc agttatatct gcaaccccaa gtaaaagaag atattgcaga
    12901 acctcaaagc agagactcac taacataatc aaacatagat tagccaccca tgatgccttg
    12961 cgaaatagca tttccatata aataccaaag ggaataaaac ttacaatatt aaatagaatt
    13021 tctggaaaat ccagcactcc atcatagacc gctgttcctg caaacggaat taagtttata
    13081 ctagcataac catagcgtcc atatacgatg ctcaagtcca tcttaaagac aatcatccaa
    13141 gtaagtaaaa ggagataggc aaaaaataaa aatatactca ttttctttgt ctgcatagaa
    13201 attctcctct caactagcat attttatcat tatatcataa atgctgttct ataaaatgtc
    13261 acttctgtga caaagctcgt tccatattac aagtacttta cagcctacta aaaacagaaa
    13321 aggaagacac tgccaagcct ccccttattc ccaaaaatat cttattaaaa tgtctgattg
    13381 ctatgctgaa aagccttata ttgatggatt tgtagcatca aacgctcaaa gttcgcttcc
    13441 ttacatgctc gcatgattaa gaagcaatca ataaacttcc acaaataaag tcccaaaaat
    13501 aacaagaacc caatcaagat aaatagcgta acaaaagata ctgcaaaagc aatcagcttg
    13561 gcaaatccca attctttatt cccgacataa aaacggtcga caccaaactc accgaagaaa
    13621 atagccaaaa taagagcgac aagaggttga tgcatctcaa ccatcataag aacgtttaaa
    13681 gcctcattat ctaaatcttc tagttctttt tgcagaatga ataacttatc agatggcaaa
    13741 taactgcttt tacttaa
//
LOCUS       DASGBY010000050        13580 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.050, whole genome shotgun sequence.
ACCESSION   DASGBY010000050 DASGBY010000000
VERSION     DASGBY010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13580
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.050"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            14..1051
                     /locus_tag="U1396_001079"
     CDS             14..1051
                     /locus_tag="U1396_001079"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM5342274.1"
                     /translation="MKEGDLLFTPISEKIDINQVREHSKLSPETLAKKQARDRELEAI
                     LKGEDNRLLLVIGPCSSDNEEAVLDYAHRLAKLQEEVKDKIFMVMRVYTAKPRTNGDG
                     YKGLMHQPDTDAAPSLINGIKAVRNLHYRVITETGLTTADEMLYPENLPLVDDLVSYI
                     AIGARSVENQQHRFVASGIDVPTGLKNPTSGNLKVMFNGLFAAQKKQSFLFNNTEVET
                     SGNPLTHVILRGAVNENGKYLPNYYYDNLLETIDLYDQFGLKNPFIIIDTNHDNSGKN
                     YLEQIRIVRQTLINRDWNESIRNYVRGFMIESYIEDGRQDNPDVYGKSITDPCLGWEK
                     TQELIREIYNR"
     gene            1061..2086
                     /locus_tag="U1396_001080"
     CDS             1061..2086
                     /locus_tag="U1396_001080"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM5342275.1"
                     /translation="MGIHKRSTSLDIDKVKELSKLEGEFLAAKNRRDEELKRIIRGED
                     DRLLLVIGPCSSDNEEAVLEYARRLSKLQEEVKDKIFMVMRVYTAKPRTNGEGYKGLV
                     HQPDTSKLPDLINGIAAVRNLHYRVITETGLTTADEMLYSANYPLVEDLVSYHAIGAR
                     SVEDQEHRFVASGVDMPTGMKNPTSGNLTVMFNGIYAAQNKQNFIYRDAEVDTDGNPL
                     AHAILRGANTEKGGYEPNYYYDILLKTIKQYEQFGLKNPFIVIDTNHDNSGKTYLEQI
                     RIVRQTLINRAWNESIRKYVRGFMIESYLEDGRQDSPEVFGKSITDPCLGWKKTEALI
                     REIHQTV"
     gene            2132..3001
                     /locus_tag="U1396_001081"
     CDS             2132..3001
                     /locus_tag="U1396_001081"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM5342276.1"
                     /translation="MNIDGYTRLAAVVAKPIKHSISPFIHNLAFKETGVNGVYVAWEI
                     PEEDLAVTLENIKRYDMFGINLSMPYKQAVIPYLDDLTASARLIGAVNTVIHKDGKLI
                     GHNTDGIGFFKSLERLKGFQVKNKRLTILGGGGASTAIIAQATLDGAKEITIFCRQQS
                     LERTQASLTPIAQATGVPMQVLALDDSQLLQEHITNSDLLVNGTSVGMDGYSQPVPST
                     IRFPENLLVADVIYQPFETPLLKLAQSQGNPTINGLGMLLFQAAEAFQAWTGKEMPTD
                     LIWDQLVQKYDIK"
     gene            3014..4081
                     /locus_tag="U1396_001082"
     CDS             3014..4081
                     /locus_tag="U1396_001082"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEM5342277.1"
                     /translation="MKLTVNLPNTPYDILIQRGSLAQTGTWIKELWKPQKIAIITDDH
                     VGSLYRETVQSSLEQAGFETIVFEFPEGEASKNLDTVNQAYEFLVKNGMTRSDGIIAL
                     GGGVVGDLAGFVASTYMRGIHFLQIPTSLTAQVDSSIGGKTGVNTPFAKNMVGTFCQP
                     DGVLIDPDTLKTLGKRELIEGMGEVVKYGLIDDVELWETLDQLDGSVESILEHADYII
                     YHSCEVKRKVVVEDELDNGVRLYLNFGHTIGHAIEVTAGYGQVMHGEAVAIGMVQISR
                     AAEKKGLMPAGMTEKIIAMCEKFGLPTTHQPWNVDELYATLTHDKKARGKTIKLVIVP
                     QLGQAAIHQIPMEEMLEFLQV"
     gene            complement(4285..5085)
                     /locus_tag="U1396_001083"
     CDS             complement(4285..5085)
                     /locus_tag="U1396_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5342278.1"
                     /translation="MSTILSIQNIHKTFEAGTVNENHVLRGLNLDVKEGDFISIIGGN
                     GAGKSTFMNSLAGALTVDSGDILLEGKSIKHVSAAKRSKDISRVFQDPKMGTASRLTI
                     EENMAIAYRRGLSRGLGWGVKDSERAILKEALKELGLGLENRMKVDTQFLSGGQRQAL
                     TLMMASLVKPKVLLLDEHTAALDPKNSDMVMELTKKIVESHQLTALMITHNMENAIEY
                     GNRLVMLHRGQIVVDVEGEEKKNLTVQNLMDLFYKNSGEKLTDDEMIL"
     gene            complement(5095..5988)
                     /locus_tag="U1396_001084"
     CDS             complement(5095..5988)
                     /locus_tag="U1396_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342279.1"
                     /translation="MDIILSSISQGLLWSVMAIGVYLTFRILDIADMTAEGSYPLGAA
                     VCATGIVNGVNPLLATFMAMVAGMGAGLISGLLHTKLKIPALLTGIVTLTGLYSINLK
                     ILGKANVALLKQETLVTQLQDFGLTKTNAVLVIGLVFVLAVVGLLTLLLNTQIGLAIR
                     STGDNIPMSEANGINVDNMKIYGYMLSNGLIALCGALLTQNNGYADLNSGTGTIVIGL
                     ASVIIAEVILRNLRLGWRLLSVVLGAVVYRLIILAILEIPSMDADLVKLFSAILLATV
                     LYVPELQKKLNIRRPKLNGNA"
     gene            complement(6043..7017)
                     /locus_tag="U1396_001085"
     CDS             complement(6043..7017)
                     /locus_tag="U1396_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5342280.1"
                     /translation="MYYKLVKKLATISVASMGLLTLAACSSSSEQASSDVVKVGVLQY
                     MEHESLTAAREGFVAELEANGYKEGEKLVLDYQNAQGDQANLQTISEQLIDGNDIVLA
                     IATPSAQSLATVSNETPIVFTAVTDPLSAGLVESIEKPGGLLTGTSDQAPIDKQVELL
                     GQAVPDAKTVGILYTTSERNSEVQVEQAKELLEKAGYKVVVKGITSSNEVQDATTSLM
                     KDVDALFIPTDNTVASTMTMIGELSVEHKVPVIGGSTDMVDEGGLLTYGTNYEALGRQ
                     TAKMAIKIIEGANVSETAVEYPETVSLHVNEEMAQKLGIDTSKLAVSE"
     gene            complement(7041..8000)
                     /locus_tag="U1396_001086"
     CDS             complement(7041..8000)
                     /locus_tag="U1396_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5342281.1"
                     /translation="MGFKKIILSSVALLSAVTLAACSSNSSDSSSVNVGIIQYAEHEA
                     LSSAREGFVEVLEEAGYKEGENLTIDLQNAQGDQANLQTMVEKLAGKNDLNFAIATPA
                     AQAMLNADSETSSVFTAVTDPVEAGLVESLEKPGGTMTGSTDATDVEGQIEMLLKVVP
                     TAKTVGIFYNSSEVNSEVQAEQAKKALEAKGVKVEVTTVTTTNDVQQAITSLAGKVDA
                     IYLPTDNTVASTASTIGDILKEAKVPAMGSDAAVIDAALFTYGVDYHAIGVQAGELAV
                     KILKGEKPADLAVEKPNTAAITVNEEMAKAVGIDAATIEALEE"
     gene            complement(8741..9742)
                     /gene="lacD"
                     /locus_tag="U1396_001087"
     CDS             complement(8741..9742)
                     /gene="lacD"
                     /locus_tag="U1396_001087"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5342282.1"
                     /translation="MTKLQLSQAKFNHMTRLSNSDQVIAALAIDQRGALKRLLAAAAG
                     GGEFGDDILIDFKKVISSDLTPYASSILLDAEYGVPASELRHADCGFIAAYEKTGYDA
                     STPGRLPDLLPNWSAKRIKELGADAVKILLYYDVDDKPEINDIKHAWVERIGSECIAE
                     DIPYFVEILTYDASDMDVTSREYAALKPHKVNGAMREFSKSRYNADVLKVEVPVNMNF
                     VEGYTDEEPVYTVEEAKAFFKEQTDSTHLPFIYLSAGVSAKLFQETLVFAKEAGSSFN
                     GVLCGRATWKDAVAIFASEGEEAAKAWLADQGRRNVEELNEVLATTACPWTEKVEVK"
     gene            complement(9766..10911)
                     /gene="nagA"
                     /locus_tag="U1396_001088"
     CDS             complement(9766..10911)
                     /gene="nagA"
                     /locus_tag="U1396_001088"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM5342283.1"
                     /translation="MTVFIKAKSIILPESEVESAYLEITDKGQFGRIVTEKPEGEIVD
                     YSDFHLAPGLVDTHIHGYASHDVMDNDFEGIKVISEGLLSCGVTSWLPTTLTDTTENL
                     DAVCETIGTYAGQETGAKIQGIFLEGPFFIEKYKGAQNPKYMSDPSIEKLDNWHSLSK
                     GLVNKIAIAPEREGVKEFIEFANSKAIHTALAHSDATYTQAEAAVEAGANIFVHVYNG
                     MSGLHHREPGMVGAALNLKNVYAEMICDGHHVHPAAAEIVVKARGAEETVLITDCMRA
                     GGMGEGESRLGEFEVVVKDGTARLKESGSLAGSILELIEAVQNVVKWGLVSLPDALRM
                     ASLAPARSVNIDHICGRIAEGRAADFIVVDDAGRLQATYLDGVKRFG"
     gene            complement(11418..12248)
                     /locus_tag="U1396_001089"
     CDS             complement(11418..12248)
                     /locus_tag="U1396_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000759190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5342284.1"
                     /translation="MKKMMLGALALVTSLTLAACGSNDLATKSDNWTAYESEKSVTIG
                     FDKTFVPMGFEQTDGSYTGFDIDLANAVFEKYGITVKWQPIDWDLKETELNNGNIDLI
                     WNGYSITDERKEKVLFTNPYMDNQQVLVTKKSSNISQVSDMKDKILGAQAGSSGYSVF
                     ESQPAILKDIVQNNDASQYATFNEALIDLKNDRIDGLLIDRVYANYYLQQEGIIADYN
                     IIDAGFENEAFAVGARKSDTTLVENINKAFAELYKEGKFQEISQKWFGEDVATDTVKK
                     "
     gene            complement(12275..12907)
                     /locus_tag="U1396_001090"
     CDS             complement(12275..12907)
                     /locus_tag="U1396_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5342285.1"
                     /translation="MLELRNLSKRFEDKQIFSNYDLVIPEGKIVAIVGQSGGGKTTLL
                     RMLAGLETIDSGTLMYNGQELPLEELGKRHLLGFVFQDFQLFPHLSVLENLVLSPMKT
                     QNMSRSEAEDKALKLLDTLGLANHASAYPFSLSGGQKQRVALARAMMIDPEIIGYDEP
                     TSALDPELRKEVEKLILENRATGITQIVVTHDMQFAENIADEIIKIEPKH"
     gene            complement(12917..13558)
                     /locus_tag="U1396_001091"
     CDS             complement(12917..13558)
                     /locus_tag="U1396_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004228788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5342286.1"
                     /translation="MDYVLEVLPSLLNGAAVSLQVFFLVLMLSLPLGAVFAFLMQIKF
                     KPLQWLLHFYVLIMRGTPLLLQLIFVYYVLPSVGITFDRMPAVILAFTLNYAAYFSEI
                     FRGGIEAIPKGQYEAAKVLKFTPVQTIRYIVLPQVVKIVLPSVFNEVMTLVKDTSLVY
                     ALGVSDLLLASRTAANRDASLAPMFIAGAIYLLMIGAVTLISKQVEKKFDYYR"
BASE COUNT         4061 a         3071 c         2542 g         3906 t
ORIGIN      
        1 gaggaaccta taaatgaaag agggagatct attgtttaca ccaatcagcg aaaaaattga
       61 catcaatcaa gtacgagaac attcaaaact ttctccagaa acacttgcta aaaaacaagc
      121 tcgtgaccgt gaacttgaag ccatcttaaa aggtgaagat aatcgtcttc tcctagtaat
      181 tggaccatgt tcttctgaca atgaagaggc tgtcttagat tatgctcacc gcttggccaa
      241 gctccaagaa gaggtcaaag ataaaatttt tatggtcatg cgcgtctata ctgccaagcc
      301 acgtaccaat ggtgatggtt ataaaggact catgcaccaa ccagatacag atgctgcacc
      361 aagcctcatc aacggaatca aagcagttcg taacctccac tatcgtgtca ttacggaaac
      421 aggtttaact actgctgacg agatgctcta ccctgaaaac ctgcctttgg ttgatgactt
      481 ggtttcctac atcgctatcg gagctcgttc ggttgaaaat cagcagcacc gttttgtagc
      541 gtcaggcatc gatgttccaa caggcttgaa aaatccaaca tctggtaacc tcaaagtcat
      601 gttcaacggt ctttttgctg ctcagaagaa gcaatccttc ctcttcaaca atactgaagt
      661 tgaaacatct ggcaacccac ttactcacgt tattcttcgt ggcgcagtca atgaaaatgg
      721 taaataccta ccaaactatt actatgacaa tcttctagaa accattgacc tctatgatca
      781 atttggtttg aaaaatccat ttattattat cgataccaac catgacaatt ctgggaaaaa
      841 ttatttggaa caaatccgta tcgtccgtca aaccttaatc aaccgtgact ggaacgaatc
      901 cattcgtaac tacgttcgcg gattcatgat tgaatcctac attgaagacg gtcgccaaga
      961 caatccagat gtctatggaa aatccatcac agacccttgc ttaggctggg aaaaaacaca
     1021 agaactcatc cgagaaattt acaacagata ggaagatatt atgggaattc acaaacgtag
     1081 caccagttta gacatcgata aagtaaagga actttccaag ttagaaggag aatttctagc
     1141 tgcaaaaaat cggcgcgatg aagaactgaa aagaattatc cgaggcgaag atgatcgtct
     1201 gctcttggtt atcggtcctt gctcatcaga taatgaagag gctgttctag aatatgcacg
     1261 tcgtctctct aagcttcaag aggaagtcaa agataaaatc ttcatggtca tgcgggttta
     1321 cacagctaag ccacgtacca atggggaagg ctataaagga ctggttcatc agccagatac
     1381 ttctaaatta ccagacctca ttaacggaat tgcagccgtt cgtaatttgc attaccgtgt
     1441 cattactgag accggactca caactgctga tgaaatgctc tactctgcca actatccact
     1501 ggtggaagac ttggtgtcct accatgctat cggagcacgt tcggttgaag accaagaaca
     1561 tagatttgtt gcatcaggtg tcgatatgcc aactggtatg aaaaacccaa cttctggtaa
     1621 tttgaccgtt atgttcaatg gtatctacgc cgcacaaaac aaacagaact ttatttaccg
     1681 tgatgcagaa gttgatacag atggcaaccc tctagctcat gctatccttc gtggtgccaa
     1741 tactgaaaag ggcggttatg agccaaacta ctactatgat attctcttga aaaccatcaa
     1801 acagtatgaa caatttggtc ttaaaaatcc atttatcgta attgatacca accacgacaa
     1861 ttctggtaaa acttacctgg aacaaatccg tatcgtccgt caaaccctca tcaaccgagc
     1921 ttggaacgaa tctattcgca aatatgtccg tggtttcatg attgaatcct acttagaaga
     1981 cggccgtcaa gatagccctg aggtattcgg caaatccatt accgaccctt gcttaggttg
     2041 gaaaaaaacg gaagctctga ttcgtgaaat tcatcaaacc gtctaattct ttccttaatt
     2101 ttttatacga taaataattt ggaggtaagc tatgaacatt gatggttaca ctcgtcttgc
     2161 tgccgttgtt gcaaagccaa tcaaacactc catctccccc ttcattcata atctggcttt
     2221 taaggaaaca ggtgtaaatg gtgtctatgt cgcttgggaa attcccgagg aagatttggc
     2281 tgtaacgctt gaaaatatca aacgatatga tatgtttggt atcaaccttt ccatgcccta
     2341 taaacaagct gtcattcctt atctagatga tttaacagcc tctgcacgcc tgattggcgc
     2401 agtcaatacc gtgattcata aagatggaaa actaatcggt cacaacaccg atggaattgg
     2461 atttttcaag agtttggaaa gactaaaagg ctttcaagtt aagaacaagc gactaaccat
     2521 cctaggtggt ggtggtgctt ctactgctat catagctcag gctacattgg atggtgcaaa
     2581 ggaaattacc attttctgcc gtcaacaaag cttggaaaga acacaggcga gtcttacacc
     2641 tattgctcaa gcaactggag ttcccatgca ggtcctagcg cttgatgata gccaattact
     2701 acaggaacat atcaccaact ccgacttact agtcaacgga accagtgtag gcatggatgg
     2761 gtattctcaa cctgttcctt ctaccattcg ctttcccgaa aatcttttgg ttgcggatgt
     2821 gatttatcaa ccattcgaaa cacctttatt aaaactagcc caatcacaag gcaaccctac
     2881 tattaacggt ttgggcatgc tccttttcca agcggctgaa gcattccaag cctggactgg
     2941 taaggaaatg ccgactgact tgatttggga ccaattagtc cagaaatacg acatcaaata
     3001 gagaggaaat ctgatgaaac tgaccgtcaa tcttcccaac actccctacg acatccttat
     3061 ccaaagagga agtttagcac agacaggtac atggatcaaa gaactttgga aacctcagaa
     3121 aatcgccatt attacagatg accacgttgg ctcactctat cgcgaaacag ttcagtcaag
     3181 cttagaacaa gctggttttg aaaccattgt ttttgaattt ccagaaggtg aagcctcaaa
     3241 aaatcttgat accgtcaacc aggcctacga atttctcgta aaaaatggta tgacacgaag
     3301 tgatggaatc attgctctcg gcgggggagt cgttggcgat ttggcaggtt ttgtcgcttc
     3361 tacctatatg cgaggtatcc atttcctaca aatcccaacc agcctaactg cccaagtcga
     3421 ttcttctatc gggggaaaaa ctggcgtgaa caccccattt gccaaaaata tggtggggac
     3481 cttctgccag ccagacggcg ttctcattga ccctgatacc ctaaaaacac tcggcaaacg
     3541 agaattgatt gaaggaatgg gcgaggttgt caaatatggc ttaatagatg atgtggagct
     3601 ctgggaaacc ctagaccaat tagacggctc tgtcgagagc attctggagc atgctgacta
     3661 tatcatctac cactcctgtg aagtcaaacg caaggttgtt gtcgaagatg aattagacaa
     3721 cggtgtcaga ctctacctca acttcggtca cacgattgga catgctattg aagtgaccgc
     3781 tggctacggc caggtcatgc acggtgaagc tgttgccatt ggtatggtac aaatctcacg
     3841 cgcagctgag aaaaaaggac tgatgccagc tggtatgaca gaaaagatta tcgccatgtg
     3901 tgaaaaattc ggcttgccga ctacacacca gccttggaat gtagatgaat tatatgccac
     3961 cctaactcac gataaaaaag cacgtggcaa gaccatcaaa cttgtcatcg ttcctcaatt
     4021 gggacaggct gccatccatc aaattccaat ggaagaaatg ctagaatttc tacaagtata
     4081 gtcatttagt tgacttttac gtcgaagtaa taaaagtcaa ctaatactca atgaaaatca
     4141 aaaacagact aggcgacgca gatgcagata gaactgaagt tcatcaaatc aagtcaacaa
     4201 cgtctgattt tgattttcga agagtataaa tgacgatata agaaaaaaga ctactgactt
     4261 gcatgaaatc agtagtctta ttttttataa aatcatctca tcgtcagtta gcttttcacc
     4321 gctgtttttg tagaaaaggt ccatcaagtt ttgaacagtc aagttcttct tctcttctcc
     4381 ttctacatcg acaacaatct gaccacggtg caacatgacc aaacgattac catattcaat
     4441 ggcgttttcc atattatgcg taatcatcag agctgtcaac tggtggctct cgacaatctt
     4501 cttagtcaat tccataacca tatcgctgtt ttttggatca agggcagcag tgtgttcgtc
     4561 caggagcaga acttttggtt taaccagcga agccatcatc aaggtcagag cctgacgttg
     4621 accacctgaa agaaattgcg tgtccacctt catacggttt tctagtccca ggccaagctc
     4681 tttcaaggct tccttaagaa tagcacgttc actatccttc acaccccagc caagaccacg
     4741 tgacaatcca cgacgatagg caatagccat gttttcttca atggtcaatc gagaagctgt
     4801 tcccatcttt ggatcttgaa atactcgact aatgtcctta gagcgtttgg cagctgatac
     4861 atgcttaatg gatttacctt caagcaaaat atcgcccgaa tcaaccgtca aggcacctgc
     4921 aagtgagttc atgaaagttg atttaccagc accattacca ccgatgatag agataaaatc
     4981 accttctttt acatctaagt tcaacccacg aaggacatgg ttctcattaa ctgttccagc
     5041 ttcgaaggtt ttatgaatat tttggattga taaaattgta gacataactt cctcctaagc
     5101 atttccattc aattttggac gacgaatatt caatttcttc tgcaattctg gcacatagag
     5161 aacggttgcc agaaggatag ctgagaagag tttaacaagg tctgcatcca tacttggaat
     5221 ttccaaaatc gctaagataa tcaaacggta aacaactgca ccgagaacaa ccgataggag
     5281 tctccaaccc aagcgtaagt tacgcaagat aacttctgca ataatgacag atgctagacc
     5341 gataacaatg gtaccagtac ctgagttgag atctgcatag ccattattct gagtaagaag
     5401 agcaccacaa agggcaatta gaccattcga caacatatag ccgtagattt tcatattgtc
     5461 tacattgata ccattggcct cactcattgg aatattatcc cctgttgaac gaatagctag
     5521 accaatttgt gtattgagca agagcgtcaa taagcctaca actgctagta caaagaccag
     5581 accaatcacc aaaacagcat ttgtttttgt caaaccgaaa tcctgcaatt gcgtcaccag
     5641 tgtttcttgt ttgagcaggg ctacgttggc tttgcctaag attttcaagt tgatagagta
     5701 gagacctgtc aaggttacaa taccggtcaa aagggctgga atttttagtt ttgtatgaag
     5761 taaaccagaa atcaagcctg cacccatacc agctaccata gccataaagg ttgccagcaa
     5821 gggattcact ccgttcacaa tccctgtcgc acaaacagca gctccaagcg gataagatcc
     5881 ctcagctgtc atatcagcaa tatctaaaat acgaaacgtc aagtaaacac caatcgccat
     5941 aactgaccaa agcaagcctt gcgagatact tgataaaata atatccacga ttttctcctt
     6001 tttctaaatt cgtagtcaat actaggttct atcttaccga tcttattcag atacagcaag
     6061 cttagaagta tcgataccta atttctgagc catttcttca ttaacgtgaa gactgacggt
     6121 ctctgggtat tctactgctg tttctgacac attggctcct tcgataatct taatagccat
     6181 ttttgcagtt tgacgaccta aagcttcata gttggtaccg taagtcaaaa gacctccttc
     6241 atccaccatg tccgttgaac caccgattac tggaacctta tgctccacag ataattcacc
     6301 gatcatggtc atggttgaag cgacagtatt gtcggttgga ataaagagag catctacatc
     6361 cttcatcaag ctagttgtcg catcttggac ttcatttgaa gatgtgattc cttttactac
     6421 taccttataa cctgcttttt ctagcaattc cttagcttgc tctacctgaa cttctgaatt
     6481 acgttcgcta gtagtgtaca aaataccaac ggtcttagca tctggaacag cttgacctag
     6541 caattcaact tgtttatcaa ttggagcttg gtcagatgta cctgtcaaaa gtccacctgg
     6601 tttttcaatg gattctacca agccagctga caagggatct gtaaccgcag taaagacaat
     6661 cggcgtttca ttagacacag tcgctaaact ctgggcagac ggcgtagcga ttgccaagac
     6721 aatatcattt ccatcgatta attgttctga aatggtttga aggttagctt gatcgccttg
     6781 ggcattttga taatccaaaa ccaatttttc accctcttta taaccatttg cttctaattc
     6841 cgccacaaaa ccctcacggg cagctgtcaa tgattcatgc tccatatatt ggagaactcc
     6901 aactttgacc acatctgagg aagcttgttc tgatgatgag gaacaagctg caagtgttag
     6961 caaacccata cttgctactg aaatagttgc caattttttt actagcttat aatacataaa
     7021 cgtttcttct cctaaatata ttactcttct aatgcttcta tagtcgctgc atcaatacca
     7081 acagctttag ccatttcttc attgacggta atagctgctg tatttggttt ttcaactgct
     7141 aagtcagcag gcttttcacc cttcaaaatc ttcacagcca attcaccagc ttgaacaccg
     7201 atagcatggt agtcgacacc gtaggtaaat agagctgcgt caataactgc cgcgtcactt
     7261 cccatagctg gaacttttgc ttcttttaaa atatcaccga ttgttgaagc tgtagaagca
     7321 actgtgttat cagttggaag atagatagca tcgacttttc ctgcaagtga agtaatagct
     7381 tgctgaacat catttgtcgt cgtaactgtt gtcacttcta cttttacacc ttttgcttcg
     7441 agtgcttttt tagcctgctc agcttgaact tctgagttta cctcgctaga attgtagaaa
     7501 ataccgacag tcttcgcagt tggtacaact ttgagcaaca tctcgatttg accttccaca
     7561 tcagttgcat cagtcgatcc cgtcatggtc ccacctggtt tttccaatga ttcaaccaaa
     7621 cctgcttcaa ctggatctgt gacagctgtg aatacacttg atgtttcact atctgcatta
     7681 agcatggctt gggctgccgg tgttgcgatg gcaaagttaa gatcattttt tcctgccaat
     7741 ttctcaacca ttgtctgtaa gtttgcttga tcaccttggg cattttgcaa atcaatcgtc
     7801 agattttcac cttccttgta gcctgcttct tcgagcacct ctacaaagcc ttcacgagct
     7861 gagctcaacg cttcatgttc agcatattga ataataccaa cattgactga acttgaatct
     7921 gacgaattgg aactgcatgc agcaagcgtt actgctgaca aaagtgctac tgaactaagt
     7981 ataatttttt taaatcccat gattattctc cttttataaa tataatagca aacaagaaag
     8041 gaccgcttag actacactct aaacggtcct tatatttcat ctgtatagga aaacagaatg
     8101 aattatccgt gccatttaga tgtatcatct atgaggcaca tgtcaaaata gctacagcca
     8161 catagataca aactttacgt tcccgtgttt gcatccatgt ttaccatgtc tacaaacact
     8221 atctaaaata gccgtagaaa taagtatgat tagctgaatg attttgacac atttgtaaca
     8281 tctctgtttc cctttctcat ttatttgtaa ctatcataac tgttttcaaa ttatttgtca
     8341 ataggaaatt gcgtaaattt tcagattttt caagtttttt cgaatttttc taaaaatagc
     8401 cccctatatt attagctata aaacgacctg tcatcatgtt tatgtagcct tttagtttac
     8461 ttttagtact tgctccaact atttcacaaa tagtcagagg ttggaaataa ggggaacaag
     8521 gtttgcgtca acaaccgcag ctataactca atttctagca ttgacttgaa tcagtcccct
     8581 agattgcttg cacagtaaat ggactgttca aggtgagaga tataagagcg gattgcaaaa
     8641 tcaggtcaac aacgactgat tttgattttc gaagagtata aatgactata tttgatgtaa
     8701 caaaaaagtc tgaacctaag cccagaccct actaaaacaa ttattttact tcaacttttt
     8761 cagtccaagg acacgctgta gttgctagaa cctcgtttag ttcttctacg ttgcggcggc
     8821 cttgatccgc caaccaagct ttggctgctt cttcaccctc gcttgcaaag atggctactg
     8881 catccttcca agtcgcccga ccacaaagaa caccattaaa gcttgaacca gcttctttgg
     8941 caaagacaag ggtttcttgg aaaagtttag cagatacgcc agcgctcaaa taaatgaatg
     9001 gcaagtgagt gctatctgtt tgttccttga agaaggcctt agcttcctca actgtataga
     9061 ctggctcttc atctgtgtaa ccttctacaa agttcatatt gacaggtact tcaaccttga
     9121 gcacgtcggc attataacgt gacttgctaa attcacgcat ggcaccattg accttgtgtg
     9181 gtttgagggc tgcgtattca cgagaagtca catccatatc gctggcatca taagtcaaga
     9241 tttcgacgaa gtaaggaata tcttctgcga tacactcact accaatgcgt tctacccaag
     9301 catgcttaat gtcgttgatt tctggcttgt catctacatc atagtaaagc aagattttta
     9361 cggcatccgc ccccaattct ttgatacgtt tggctgacca atttggcaaa aggtctggca
     9421 aacgacctgg tgtggacgca tcataacctg ttttttcata agctgcaatg aaaccgcaat
     9481 ctgcatggcg caattctgaa gctggaacac cgtattccgc atccaagaga atggagcttg
     9541 catacggagt caaatcgctt gagatgactt tcttgaagtc aatcaaaatg tcatctccaa
     9601 attcgccacc acctgctgca gcagcaagca ggcgtttcaa tgcaccacgt tggtcaatcg
     9661 ccaaggccgc aatcacctga tcgctgtttg acaagcgggt catgtgattg aattttgcct
     9721 gagaaagttg taattttgtc attagtttcc tcctaaggaa ttttattaac caaatcgttt
     9781 cacgccatct agataggtcg cttgtaagcg tcctgcatca tctacgacga taaagtctgc
     9841 agctcggcct tctgcaatcc gaccacaaat atggtcaata ttgacagagc gagctggtgc
     9901 cagagaagcc atacgaaggg catcaggtag ggacaccaag ccccatttca caacattctg
     9961 cactgcttca atcaattcta agatagaacc tgccaaacta ccactttctt ttaaacgagc
    10021 agttccatct tttacaacaa cttcaaattc accgaggcgg gactcccctt cacccatacc
    10081 gccagctcgc atacagtccg taatcaaaac agtttcctca gctccacgtg ctttgaccac
    10141 gatttctgcc gcagctggat gaacgtggtg tccatcacaa atcatttccg catagacatt
    10201 ttttaaattc aaagcagcac cgaccatacc tggttcacgg tgatgaagcc cactcatccc
    10261 attgtaaaca tggacgaaga tattggcacc agcttctact gccgcttccg cttgcgtata
    10321 ggtcgcatcg ctgtgagcca aggcagtatg aattgccttg ctgttagcaa actcgatgaa
    10381 ttctttgacg ccttcacgtt ctggagcaat agcaatttta ttgactaaac ctttagataa
    10441 gctgtgccag ttgtccaact tttcaatgga tggatcgctc atgtacttag gattttgtgc
    10501 tcccttgtat ttttctataa agaagggacc ttctaagaaa ataccttgaa tcttggcgcc
    10561 tgtttcctgc cctgcataag tcccaatcgt ttcacaaact gcatctaaat tttcagtcgt
    10621 atccgttaat gtcgttggaa gccaagaggt taccccacaa gacaagagac cttctgaaat
    10681 taccttgatc ccttcaaaat cattgtccat aacatcgtga gaagcgtagc cgtggatatg
    10741 tgtatcaact agccctggtg ctaaatgaaa gtcagaataa tcaacaatct ccccttcagg
    10801 cttttcagtc acaatccgtc caaactgacc cttgtcagta atttccaaat aggctgattc
    10861 gacctcactc tctggtaaaa taatagattt tgcttttata aatactgtca tattatctcc
    10921 tttgttgata tatatactta tcaaactggt tataaccata tactaaatat attgtagaac
    10981 ttctattaga aaatgtcaag taattaccat aactttataa gaaatggatg ctgtgagaag
    11041 gtagaaaaag agttcgtcaa caatttttcg ttttaagttg ttgagctgaa acagtctatc
    11101 cccagacatc aatttatgtg agctgactgc cgtcagctta tatctcccac tttaaaaggt
    11161 ctcccagacc ttttaaactc ccacccccgc atagctccaa cagtcagaat agtgactgtt
    11221 taagccaatc aaccactgcg ctgagatgtt gacacgaact ccgagaagtg gcgctgagct
    11281 ttttgctcag cctcgtagaa tcttaagtta atgatattgg tgtacacccc caccgttttc
    11341 acgagttctt ttcattattc tgtggatgag ggtgtaacca tcatggatgt cttgttcagt
    11401 cacttttgct tacattatta tttttttact gtgtcggttg caacatcctc accaaaccat
    11461 ttttgggaga tttcttggaa tttaccttct ttatataatt cagcaaacgc cttattaatg
    11521 ttttcaacga gtgtcgtatc tgatttacga gcaccgactg cgaaggcttc attttcaaaa
    11581 cctgcatcaa tgatgttgta atctgcgata attccctctt gttgcaagta ataatttgca
    11641 tacacacggt caatcaaaag gccatcaata cgatcgtttt tcaagtcaat caaggcttca
    11701 ttgaaggtcg catactgact tgcatcgtta ttttgaacaa tatctttcaa aatagctggt
    11761 tgtgattcaa atactgaata gccagatgaa cctgcttgcg cacctaaaat cttatccttc
    11821 atatcagata cttggctaat attggaagat tttttggtta caagaacttg ttggttatcc
    11881 atgtagggat ttgtgaaaag aactttttcc ttacgctcat ctgtaataga ataaccattc
    11941 caaattaaat caatattccc gttattcaat tcagtttctt tcaagtccca gtcaattggt
    12001 tgccatttta cagtaattcc atatttttca aagactgcat tagccaagtc aatatcaaaa
    12061 cctgtgtaag aaccatctgt ctgttcaaat cccattggga caaaggtctt atcaaagcca
    12121 atcgtaacgg atttttcaga ctcgtaggct gtccaattat cagacttagt agccaaatca
    12181 ttggagccac aagcagcaag agttaaagaa gttacaagag caagagctcc aagcatcatt
    12241 tttttaatat tcatcatcat atttgttcct tttcttagtg tttcggttca attttgatga
    12301 tttcatctgc gatattctca gcaaactgca tatcatgggt gaccacaatt tgcgtgattc
    12361 cagtagccct attttcaaga atcagtttct caacttcttt tcttaattca gggtctaggg
    12421 ccgaagttgg ttcatcatag ccgataatct caggatcaat catcatcgca cgcgccaagg
    12481 ccacacgttg tttctgtcca cccgataatg aaaatgggta ggcacttgcg tggttagcaa
    12541 gtccaagagt atccaagagt ttaagggcct tgtcttccgc ctctgaacgc gacatatttt
    12601 gcgttttcat aggagagaga accaagtttt ccaatacgga taggtgcggg aaaagctgga
    12661 agtcctggaa gacaaagccc agcaaatgtc gttttcccaa ctcctctaat ggcagttctt
    12721 gaccattata catcaaagtt cctgaatcaa tagtctctaa accagccaac atccgtaaaa
    12781 gagttgtctt accaccgcca gattgaccaa caatggcaac aattttccct tctggaatga
    12841 ccaaatcata gttggagaaa atctgtttat cttcaaagcg ttttgacaaa ttgcgtaact
    12901 ctaacatgac ttcctcctat ctataataat caaatttctt ttctacttgt ttagaaatca
    12961 gtgttaccgc accgatcatc aataggtata ttgcacctgc gataaacata ggcgccaagc
    13021 tggcatcacg attggctgca gtacgactag ccaacaacaa atcgctaacc ccaagcgcat
    13081 agaccaaaga agtatccttt accaaagtca tgacttcatt gaaaacactt ggtagaacaa
    13141 ttttcacaac ctgtggtaag acaatgtagc gaatggtctg aacaggggta aatttcaata
    13201 ccttagcagc ttcatactga ccttttggaa tagcttcaat accaccacgg aaaatttcag
    13261 agaaataagc cgcatagttg agcgtaaagg ccagaattac agcaggcatc cggtcaaatg
    13321 taatacccac acttggtaag acgtaataaa caaaaattaa ttgtaaaagc aagggggttc
    13381 ctcgcataat taatacatag aaatgcaata accattgtaa gggtttaaat ttaatctgca
    13441 ttaaaaaagc gaaaacagct cctaatggca aggataacat caatactaga aaaaatactt
    13501 gcaaggagac tgcagcacca tttagtagac tgggcagaac ttccaaaaca taatccatag
    13561 agctctccta aaagaatgat
//
LOCUS       DASGBY010000051        13244 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.051, whole genome shotgun sequence.
ACCESSION   DASGBY010000051 DASGBY010000000
VERSION     DASGBY010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13244
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.051"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(216..668)
                     /locus_tag="U1396_001092"
     CDS             complement(216..668)
                     /locus_tag="U1396_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM5342287.1"
                     /translation="MEHIKDIWQEMYEKAKGHYAPHYVSPFIYSNHVVAAIEAEDGQI
                     YTGYCFEATAGVFHLCAERAAAFNMFQDSGQTTIKRIIAFRNQAPSGEGSGMPCGACR
                     EFLMQLSAENAQTEIMVDFDKRETITLGELMPYWWGEERMQAGTDHLE"
     gene            complement(743..3361)
                     /gene="alaS"
                     /locus_tag="U1396_001093"
     CDS             complement(743..3361)
                     /gene="alaS"
                     /locus_tag="U1396_001093"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000661542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM5342288.1"
                     /translation="MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSG
                     VATLKKYFDGSVIPDNPRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRD
                     EAIEWGFELLTSPEWFAFPKDKLYMTYYPDDMDSYNRWIALGVEPSHLIPLEDNFWEI
                     GAGPSGPDTEIFFDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRS
                     EYKELPNKNIDTGAGLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMS
                     FKVIADHIRALSFAIGDGTLPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETV
                     GNIMESYYPEVLEKRAFIEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGR
                     DIFKLYDTYGFQVELTEELAEHRGMTLDIAGFEAAMKEQQDRARASVVKGGSMGMQNE
                     TLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQALLVFDQTPFYAEMGGQVA
                     DHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVEKN
                     HTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW
                     NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTIGDYSVELCGGTHVGNTAEIGI
                     FKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESLA
                     QQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWK
                     QKDYSDVLVLVAAIGDKVNVLVASKSSDVHAGNLIKVLAPIVAGRGGGKPDMAMAGGS
                     DSSAIQTLLNSVAENL"
     gene            complement(3641..4126)
                     /locus_tag="U1396_001094"
     CDS             complement(3641..4126)
                     /locus_tag="U1396_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LURP-one-related family protein"
                     /protein_id="HEM5342289.1"
                     /translation="MKQFQVKQRFTFGGEKFDIRDSFGNLAYQVEGSFLEIPKRFIVT
                     NSRGGEVCQITKKFLTFLPQFTIDMVEGHSFYLQKEFTFFKDRYTVENLGLILDGNIW
                     DLDFRLKRPDGMLVAEISKELFHLTSHYSVTVLEDSYADLVISLVVAIDYIEMMEDAS
                     N"
     gene            complement(4392..5393)
                     /gene="prsA"
                     /locus_tag="U1396_001095"
     CDS             complement(4392..5393)
                     /gene="prsA"
                     /locus_tag="U1396_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PrsA"
                     /protein_id="HEM5342290.1"
                     /translation="MKQTKKILAGAVTLFAAVTLAACSNAADKDIITMKGNTITVSEF
                     YEKVKTNSQAQQVLLSMVISNVFENQYGDKVSAEEVNKEYDKKAEQLGASFNAALSSA
                     GLTEESYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEVTARVIKLADEAKA
                     KEVLAAAQAEGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPAEVQKAVFALDAGQ
                     VGASVISSVDMKTYTTSYYVVKLDAKSEKSAKWEDYKDKLKEIILAQKQRDSSFVATV
                     LKEALQKANVKVKDSAFQNLLSQYVTTEESSSSSTKSSSSSTESSSSTTESSSSSGQ"
     gene            complement(5454..6173)
                     /locus_tag="U1396_001096"
     CDS             complement(5454..6173)
                     /locus_tag="U1396_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEM5342291.1"
                     /translation="MVESYSKNANHNMRRPVVKEEIVDFMRTRQAQNTGFLKELEEFA
                     HQENIPVIPHETVAYFRLLMQTLQPKRILEVGTAIGFSALLMADNSPHSKITTIDRNE
                     EMIGFAKENFAKYDYRQQIELLEGEAMDILPTLPDNTYDFIFMDSAKSKYIVFLPEVL
                     KKVKVGGLIILDDIFQGGDVAKDIKDIRRGQRTIYKGLQRLFDATLDNPDVTASLVSM
                     SDGLLMLRKNVENVDLKHIEI"
     gene            complement(6248..6796)
                     /locus_tag="U1396_001097"
     CDS             complement(6248..6796)
                     /locus_tag="U1396_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342292.1"
                     /translation="MLTEEQLQDIFELADLMSNGDRELFLQLREVVFASDPHEILNFM
                     ERILDSESFDDFLDRVGESEKENLWLILIKLLEHLNYICVRDYKDNLEDFIYFFDCLQ
                     QVRNAGISLKLDSGGLSPIASISEWARVIDNKYLDENFCLGAVDMDTDSYYLFFSKQA
                     TFIRLQELAGNLGYRIDYAKNM"
     gene            complement(6812..7252)
                     /locus_tag="U1396_001098"
     CDS             complement(6812..7252)
                     /locus_tag="U1396_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342293.1"
                     /translation="MISYKRSIVIPSVISLVFILLGLGGLTRPEPSMGSVVYLIFLQA
                     LLVYLYILRKQKAVFILTKQYLEFQEHFWSERQRHSLEEIAEIRYIVSPVYRGYQSKR
                     LRIVGNKGGLLAVVSLNRLDGADFNDIYHFVEQVAPHIRWDFSN"
     gene            complement(7254..9056)
                     /gene="pepF"
                     /locus_tag="U1396_001099"
     CDS             complement(7254..9056)
                     /gene="pepF"
                     /locus_tag="U1396_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM5342294.1"
                     /translation="MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFA
                     GHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKNDQDTREGKYQEFQAKAMGLYAAF
                     SQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
                     SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAM
                     YGTYEQFQHTYAKTLQSNVKVNNLKARLRKYDSARHASLAANFIPESVYDTLVAAVNK
                     HLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALKKCQETLEIFGEDYS
                     AIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSL
                     HSMLTRKTQPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFR
                     GTVFRQTQFAEFEQAIYKADQEGQVLTADFLNELYGQTNEKYYGLSAEENPEIQFEWA
                     RIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSLNVIAKA
                     GVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL"
     gene            complement(9288..10229)
                     /locus_tag="U1396_001100"
     CDS             complement(9288..10229)
                     /locus_tag="U1396_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HEM5342295.1"
                     /translation="MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSH
                     FAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQVELEKCLPSIGQVADLFVNNSL
                     ALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
                     HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTF
                     PLDRDLPRYIAQQLYYRSPNWLTLQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQ
                     IQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM"
     gene            complement(10293..12350)
                     /gene="metG"
                     /locus_tag="U1396_001101"
     CDS             complement(10293..12350)
                     /gene="metG"
                     /locus_tag="U1396_001101"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019313364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEM5342296.1"
                     /translation="MGCYQEQGFICPELKGKSMTKTPFYITTPIYYPSGKLHIGSAYT
                     TIACDVLARYKRLMGHEVFYLTGLDEHGQKIEEKAKEAGLTPQAYVDGMAVGVKELWN
                     LLDISYDKFIRTTDDYHEEVVAAVFEKLLAQDDIYLGEYSGWYSVSDEEFFTESQLEE
                     VFRDENGKVTGGIAPSGHEVAWVSEESYFLRLSKYQDKLVEFFNAHPDFIQPDGRMNE
                     IMKNFIEPGLEDLAVSRTSFTWGVPVPSNPKHVVYVWIDALLNYATALGYGQEETINY
                     DKFWNGTVYHMVGKDILRFHSIYWPIMLMMLDMKLPDLLVAHGWFVMKDGKMSKSKGN
                     VVYPEMLVERFGLDPLRYYLMRSLPVGSDGTFTPEDYVGRINYELANDLGNLLNRTVA
                     MINKYFSGQVPTFVANVTDFDADLAAVVADNLASYHKYMEAVDYPRALEAVWNIISRT
                     NKYIDETAPWVLAKDEADRDKLAAVMAHLTAGLRVVAHLIQPFMMTTSNAIMEQLGLG
                     TAFDLENLDFAGLPAGLTVVAKGTPIFPRLDMEEEIAYIQAQMGGSSAISQEEEKEWN
                     PADVELKNEKAAIKFEDFDKVEIRVAEVKEVAKVEGSDKLLKFRLDAGDGEDRQILSG
                     IAKFYPNEQELVGKKVQIVANLKPRKMMGLLSQGMILSAEHGDNLILLTVDPSVPNGS
                     QIG"
     gene            12450..13043
                     /locus_tag="U1396_001102"
     CDS             12450..13043
                     /locus_tag="U1396_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM5342297.1"
                     /translation="MFTKKNILTHLFFLIIAVGLKRYGVTAPDLTWNMFLALVALDFA
                     ILTNHTKSHILKVIAGLLWLFFYPNTFYMVTDIVHMHFANTVLWQRESMILFMLYVPS
                     IFFGVMAGVESVRLIFSAFSIKSYWLKLFMISGLSLLSSFAIHIGRYARLNSWDIFTR
                     PTVVIDEMLAVISWDALPFILGFTFIQIMVLVFSINE"
BASE COUNT         3751 a         2983 c         2556 g         3954 t
ORIGIN      
        1 aggttgtttc atttggtgac tccttatctg ttcatcgtat cagatgaacc ttttcgattt
       61 tcatctcaat atcattgtaa cacttctttt tctttttgac aactatcttt gtcaaaaaaa
      121 taataatttt tgtcaaaaag tttatgaatg ttgtcaaatt gactagaatg ccatacaaaa
      181 aactccttta tccagaggat aaaagagttc atttattatt ccaagtgatc tgtaccagct
      241 tgcattcttt cttcacccca ccagtaaggc atgagttcgc ctaatgtgat ggtttctcgt
      301 ttgtcaaaat caaccatgat ttctgtctgt gcattctcag ccgacagttg catcaaaaat
      361 tcacggcaag ctccacaagg cattcctgaa ccctctccag agggagcttg atttcgaaag
      421 gcaataatgc gttttatcgt cgtctgccca ctatcctgaa acatattaaa ggcagcggct
      481 ctctctgcac aaagatgaaa tacacctgct gttgcctcaa agcaataacc ggtgtaaatt
      541 tgtccatctt ctgcctcaat tgcagcaaca acatggtttg aataaatgaa aggcgaaaca
      601 taatgtggcg cataatgacc ttttgctttc tcatacatct cttgccaaat atctttgatg
      661 tgttccatac gtactcctca ttttagaata gaaagatatc cccttgctag ttgctttaac
      721 aaagggatat acactgacta tattacaagt tttcagctac actattcaag agggtttgga
      781 tagcagagga atcgctacca ccggccatgg ccatgtccgg cttaccacca ccacgacctg
      841 ctacgattgg cgcaaggact ttgatgaggt tacctgcatg aacatcgctt gacttgcttg
      901 ctacaaggac attgaccttg tcgccgatgg ccgcaaccaa caccaagaca tcagagtagt
      961 ctttttgctt ccagttgtca gcgaaggtac ggagggcacc tgcgtctgaa acttggactt
     1021 ggctagcaat gtagcgaatg ccgttagcat ctttgacatc tttgaagaca tcaccagcag
     1081 cggctgccgc tgctttttct ttcagagctg cattttcttt ttgcaggtca cgaacttgct
     1141 gagcaagact ttcaaccttg tttggcactt ccttgatctg cggcgacttg atggttgccg
     1201 ctacttcttt gagggcatct tcttggtcac gataggcaag gaaggcttca cggcctgtta
     1261 ccgcaatgat acggcgagta cctgaaccga taccttcttc tttcaaaatc ttgaagatac
     1321 cgatttcagc ggtgttgcca acgtgggtac caccacagag ttccacagag tagtcaccga
     1381 tagtaacaac gcggacttct ttaccgtatt tttcaccgaa gagggccatg gcacccattt
     1441 ccttggctgt gtcaatatct gtctcaactg tcacaactgg gatagcattc caaatttgct
     1501 cattgacttc ttcttcaata cgacgaagtt cttccgcagt aactgcctca aagtgcgtaa
     1561 agtcaaagcg gaggaaatct tgctcgttca aggaaccagc ctgtgttgca tgctcaccga
     1621 taatattgtg aagagctgca tggagcaagt gagttgctgt gtggttcttc tcaacaccct
     1681 tacggcgttt tgtttcgatt tcaagtgtgt aggtttgacc aactgaaata cttgcggaca
     1741 gttcaactgt gtgcaatggc tgaccattcg gtgctttctg cacatcgatg acagtcgcaa
     1801 caatgtctcc agtagcattt ttcacaaaac catggtctgc aacctgacca cccatttctg
     1861 catagaatgg tgtttggtca aagacaagga gggcttgacc ttctgagact gcttctgtac
     1921 gcgcattatc agccacaatg acagataagc ttgcttcaag agctgtttgc ccataaacaa
     1981 aggtcgactc ttctgtgata gcagccaggg tttcattttg catccccatt gaaccacctt
     2041 tgacaactga agcacgggca cggtcttgtt gctctttcat agccgcttca aaaccagcaa
     2101 tgtcaagggt cataccacgg tgctcagcca attcttctgt caattctact tggaaaccat
     2161 aggtatcata gagtttgaaa atgtcacgac catcaatctc agacttacct tctgctgcca
     2221 atttatccat caattgctca gcaaattgtg aacctgtatg gatagtacga gcaaatgact
     2281 cttcttcact cttaacaatc ttctcaatga aggcacgttt ttcaagtact tctggatagt
     2341 aactttccat gatattacca actgtctcca ccaatttgta caagaatggc tctgtaatgc
     2401 ccaaacgttg accatgcata gaagcacgac gaaggagacg acgaaggaca taaccacgac
     2461 cttcatttcc aggaagggta ccgtcaccaa tagcaaaaga aagggcacgg atgtggtctg
     2521 caataacctt gaagctcatg ttgtcgccat cttggtcata ggtcttacca gaaatctttt
     2581 ctacttcacg aatgattggc aagaagagat ccgtttcaaa gttggtctta gccccttgga
     2641 aaatagctgc taaacgctcc aaacctgcgc ccgtatcgat gtttttgttt ggcaattcct
     2701 tgtactcaga gcgaggaaca gctgggtctg cgttgaactg ggacaatacg atattccaaa
     2761 tctcaatgta acggtcattt tcaatatctt cttccaagag acggatacca atgttttcag
     2821 ggtcaaagtc agtaccacgg tcaaagaaaa tctccgtatc tggaccagaa ggacctgcac
     2881 cgatttccca gaagttatct tcaagcggaa tcaagtggct tggctcaaca ccaagggcaa
     2941 tccaacgatt gtatgaatcc atatcatcag gatagtaagt catgtagagc ttgtcttttg
     3001 gaaaagcaaa ccattctggg cttgtcaaga gctcaaagcc ccattcaatc gcttcatcac
     3061 ggaaataatc accaatagag aagttaccaa gcatttcaaa catggtgtgg tggcgggctg
     3121 tcttaccaac gttctcgatg tcgttggtac ggattgattt ttgggcattt gtaatccgtg
     3181 ggttatctgg aatgacagag ccatcaaagt atttcttgag ggttgccaca ccagagttga
     3241 tccacaaaag agtgggatcg tttacaggga caagatttgc tgaaggctca acagagtgac
     3301 cctttgattt ccagaaatcc aaccacattt gacgaatttg agcagaagat aaatttttca
     3361 taaactaaga taccaagccc gattagaagg cgactgaaaa ataggaaact gacaggaaat
     3421 cttgatttcc taggcagttt atcttttttc cgagccttcc gagcgggttc aatttaacga
     3481 aacagttaaa ttaaacattt cctttcatat agtaataatt gaggggaaag tccgtagccc
     3541 gagtccattt cagaataaac tcgataccct ttcctttcat aagtgatagt taggcgggtt
     3601 caatttaacg gaacagttaa actgaatgat tatttcacga ttaattcgat gcatcttcca
     3661 tcatttcgat gtagtcaatt gcgaccacca aggaaatgac caaatctgca taggagtcct
     3721 ccaatacagt aacggaataa tgagaagtta aatgaaagag ttctttggag atttcagcta
     3781 cgagcatacc atctggcctt ttcaagcgaa aatccaaatc ccagatattt ccgtctagga
     3841 ttaaacctag attttccaca gtataacgat ccttgaaaaa agtaaattcc ttttgcaagt
     3901 agaaagaatg tccctctacc atatcaatgg taaactgggg caggaaggtc aaaaacttct
     3961 tagtaatctg acaaacttcc ccacctctgg aattggttac gataaatcgt tttggaattt
     4021 cgagaaaaga tccctccact tgataagcaa gattcccaaa actatcacga atatcaaatt
     4081 tttcaccacc aaaggtaaag cgctgtttca cttgaaattg cttcatgata acctccaaaa
     4141 aaataacaag aaatcaaacg aagggcgaaa aaaccgcggt accaccttca ttcaatgact
     4201 tgtcattctc atttaagaaa ctgtatccac aagcaaaaaa cttttatata taagccacaa
     4261 actgtgaata caggctctac tattcaattg taatattaag tagcaaaata cttggcttag
     4321 atggctcgca acaaccgcca attttctgaa ctaaggtgtc aagtaccaat tcttaataag
     4381 taaatcgtca attactgacc tgatgaacta gaagattctg ttgtagaaga agaactttca
     4441 gtcgacgaag agctgctctt cgttgaggaa gaactgcttt cttctgttgt cacatactgt
     4501 gaaagaagat tttggaaagc actgtcttta accttaacgt ttgctttttg gagtgcttct
     4561 ttcagcacag tagcaacaaa tgatgaatct ctttgctttt gtgccaaaat aatttctttc
     4621 agcttatctt tataatcttc ccatttagca gatttttctg atttagcatc caattttaca
     4681 acgtaataac tcgttgtata cgtcttcata tctaccgaag aaatcaccga cgctccgact
     4741 tgacctgcat ccaaggcaaa taccgctttc tgtacctctg ctggaacagt tgttgaagtt
     4801 gaatcgaatt taacttcgcc tccattgtct tttgtagtag tatccgtgga attgtctttc
     4861 gccaattgag caaaatctgc accttcagct tgtgcagcag ctaaaacttc ttttgcttta
     4921 gcttcgtctg ccaacttgat gacacgtgct gttacttcag gtgtataggc gtcataagct
     4981 gccttgtagt tttcatctgt caattctttc tcagcagctt gttttacagc atactcaacc
     5041 aatttattgg tacgaatttg ttccttatag gattcttctg tcaatcctgc cgaagaaagt
     5101 gccgcgttaa aagaagcacc aagttgttct gccttcttat catattcctt atttacttct
     5161 tctgcagaga ctttgtcacc atactgattt tcaaatacat tactgataac cattgacagc
     5221 aaaacttgtt gagcttgtga gtttgttttt actttctcat aaaactcaga cacagtaatc
     5281 gtgttacctt tcatcgtaat gatatcttta tcagctgcat tggaacaagc agcgagtgtt
     5341 actgcagcaa agagtgttac tgcacctgcg agaatttttt tagtttgttt cattaaagac
     5401 tctctccttt tttcattaac ccctttatta taacacaaaa gcttaaaaac ttcttaaatt
     5461 tctatatgtt ttaagtcaac attctctaca tttttcctca acataaggag accgtcactc
     5521 atggaaacaa gactagcagt cacatctgga ttatccaaag tcgcatcgaa taaacgttgc
     5581 aatcccttat aaatcgttcg ctgccctctt ctgatatcct tgatgtcctt ggcaacatct
     5641 cctccttgga agatgtcatc caaaatgatt aaaccaccta ctttgacctt tttcaagact
     5701 tctggtaaaa atacaatata ttttgattta gcagaatcca tgaaaataaa atcatatgtg
     5761 ttatctggta aagtaggaag aatatccata gcttctcctt ccagcaattc aatctgctgg
     5821 cgataatcat acttggcaaa gttttcctta gcaaatccaa tcatttcttc atttcgatca
     5881 atcgtcgtaa tcttcgagtg cgggctattg tcagccatca gtaacgcaga gaagccaata
     5941 gcagttccaa cttctaaaat acgtttaggt tggagtgtct gcatcagcaa gcggaaataa
     6001 gctaccgttt catgagggat aactggaatg ttttcttgat gagcaaactc ttccagttct
     6061 ttcaaaaacc ctgtattttg cgcctgacgt gttcgcataa aatccacaat ttcttccttg
     6121 acaaccggac ggcgcatatt gtgatttgcg tttttactat atgattcaac catagaatcc
     6181 attatatcat aagccgacaa gattttcttc ctcaacacac taaaaggtag gtttccccac
     6241 cttttcttta catatttttg gcgtaatcaa ttcgataccc taaatttcca gctagttctt
     6301 gaagtcgaat aaaagtcgcc tgcttactga aaaagagata gtaactatcc gtgtccatat
     6361 ctactgcccc tagacaaaag ttttcatcaa gatatttgtt atcaatgact cttgcccatt
     6421 ctgaaataga tgcaattgga cttaatccac ctgaatccaa tttaagagaa attcccgcat
     6481 tgcggacctg ctgaaggcaa tcaaaaaagt agataaaatc ttcaagattg tccttataat
     6541 cacgcacaca aatatagttc aaatgctcta gtaattttat caagattaac caaagatttt
     6601 ccttttcaga ctctccaaca cgatccaaga aatcatcgaa tgactctgaa tctaaaatac
     6661 gttccataaa attgagaatc tcgtgtggat cactggcgaa gactacttct ctaagttgga
     6721 gaaatagttc cctatcacca tttgacatta aatctgctaa ttcaaaaata tcttgtagtt
     6781 gttcttctgt taacatagtc ccctctcttt attaatttga aaaatcccat cttatatgcg
     6841 gtgctacttg ctctacaaaa tggtaaatat cattaaaatc tgcaccatca agcctattca
     6901 agctgacgac tgcaagtagt ccccccttat ttcctacaat tcgcaaacgt ttcgactgat
     6961 agccacgata gacaggagaa acgatgtatc gaatctctgc aatctcttct aacgaatggc
     7021 gttgacgttc actccaaaag tgttcttgaa attctaggta ctgttttgtc aagataaaaa
     7081 ctgccttttg ctttctcaat atatataaat aaactagcaa agcttgtaaa aatatcaaat
     7141 agacaacact tcccatagat ggctcaggtc tagtcaaacc accaagaccg agcaagatga
     7201 aaacaagact aatcacactg ggaatcacaa tcgaacgttt ataggaaatc atattagagg
     7261 tgcacacctt tctcaacgag agcttctaat tcttccaaac gagcctcaaa aaccttaaag
     7321 gcgtcgttga ggtaatcttc cttggtcatg tctacacctg ctttagcaat gacattgagg
     7381 gaataatctg agctaccagc cttcaagtag ttgagatagt tttctttgtc ttctggactg
     7441 ccgttgacaa tcttgtttgc aagagctgat gcagccgcaa aacctgtcgc atattgatag
     7501 acatagaaat tgtaatagaa gtgtggaata cgagcccact caaactggat ttctggattt
     7561 tcttcggcag aaagtccgta gtatttctcg tttgtctgac cgtacaattc gttgaggaaa
     7621 tcagccgtca agacttgacc ttcctggtct gccttgtaga tagcttgttc aaactcggca
     7681 aattgtgtct ggcggaagac tgtgccacgg aaaccatcta ggtaatggtt aagaatagca
     7741 aagcgttcct tgtcatcttc tacttctgcc aagagttttt ctgttaggag attttcattg
     7801 gttgttgaag caatttctgc caagaagagg gaataatgac catagacata gggttgagtc
     7861 ttacgagtca acatggaatg aagagaatgc cctgtttcat ggataagggt gtacatgtta
     7921 tccaaattat cctgccagtt gagaagcatg aaggcgttgg tgtcgtaggc acctcctgaa
     7981 tatgctcctg agcgttttcc ttcattaaca tggacatcaa tccagcgatt ttcgaaggct
     8041 tccttcacaa tagccgaata atcctcacca aagatttcta aggtttcttg gcatttcttg
     8101 agtgcatctt cataagaaat cttggtgctg aaatctgaca atggtgtgta catatcgtac
     8161 atcttcaagt catcaatacc taggagtttc ttacgcaaat tgatataacg gtgcaagagc
     8221 ggaaggtgct tgttgactgc cgccactaat gtatcgtaaa cagattctgg aatgaaatta
     8281 gctgcaagtg atgcgtggcg agctgagtca tacttccgta aacgagcttt caggttattg
     8341 actttgacat tagactgaag ggtcttagcg tatgtatgct ggaactgctc gtaggtaccg
     8401 tacatagctt cgtatgcttc ttggcggaca tcacggtttt tagactccat aaagtggatg
     8461 tagtttccgt gtgaaagtgg caccaagtga ccgtcttcat ctgcgatttc tgggaaacgc
     8521 aggctagcat tgtccaagac tgagaaggtt tcagcaggtg attcaaaaat ctcgctggtt
     8581 gccgcaagga cttcttccac ctcttgtgac aggacatggt ccttggctgc cagaagtttt
     8641 tcaaattggt ggctgtactg aacaagagta ggctcttctg ccttaaaggc ctccagctgc
     8701 tcttcagtaa tggccataaa ttcaggctca tagaaggcaa aagcctgtga aaaggcagca
     8761 tacaagccca tggccttagc ttgaaattcc tgatattttc cttcgcgagt atcttggtcg
     8821 ttcttcatag acgcatagac atagagtttt tcaatgcgac gcataagact aagttgcgtt
     8881 tcgctaattt ctaagagact tttagctgag tccagtaaat gacctgcaaa ttcttttgtt
     8941 ttttcagttt cagcttgtaa atccgcaagt tctgcttccc aggcatcatc ggttgggaaa
     9001 atagtagtca aatcccactg gtatttttct tcaatttcgt aacgttgttt agacataatt
     9061 aatcctccgt attctttatt ctaacataaa aaatcccctc tttccaacgg aaagtgagga
     9121 cttataggtt actatttcaa ctggaaaata gtttttttgg tattcgctat cgcaagtcgt
     9181 cactaggcta acaaagtcta caaccttcac cgacagtagt atgactaaca taaaatattg
     9241 agcatatttt caaaagtaat atatacacct ccatcagcta tctctattta cattggtttt
     9301 ctataaatta taggtggata tagaacctgt ttctgcttgt cttcaatatt gccgtaatac
     9361 tggtcaaaat cctgataaac taaggttaaa tctttttgta tttgggcaaa gccaatggca
     9421 gagcggggta gacggatatg tgggtaccat tcttctgccg tctttgtcag caaattctcc
     9481 cctcggctat aagactctgc ctgcagggtt aaccaattgg gggatctgta ataaagctgt
     9541 tgagcaatgt agcgaggcaa atccctatct aacgggaaag taagatgcga taaagcttgc
     9601 ttggcaaaag gcagacgcaa gatgtccaat aaatttccct cgccaaatgg aaaaaccttt
     9661 gtcagacagt ggaccttacc tcgtaagtct tcgtgaataa ggtaacgaag acgcaattct
     9721 tttttctcgt catccaattc ccagaggtga aaacccatgt tcatactaaa agagagaaat
     9781 tgcttgtgta atttacttaa tctttctttt atccataggc cttttcccaa cagccagaga
     9841 acctgaagac cagcttcatg ataggcttgc gtcctcagct gcaaacgaga aatgggcaga
     9901 ctggaacatt ggacttccaa agctagacta ttattaacaa ataaatcagc gacctgccct
     9961 atactaggca ggcatttttc aagttcaact tgttcggcat tgattaacca actgtacaga
    10021 caagacttaa gtgacagatg ctgggctgac tcattctcgg aaaaatagtg gcagtcccgc
    10081 agggttacat gggcaaaatg cgaacgcaga acttttccgg atttgtatcg gaccagccct
    10141 ccacaacctg gacaagaata gcgaccttgc ggcgcaggat tttccaagac attaaaaact
    10201 tgtccatctt catcaagtgc aactaacata aaacctcctc tctttattag ttcgcaaaaa
    10261 aacacccagc tatgctgagt gtttgaattt tcttacccaa tctgactgcc atttggcaca
    10321 gatggatcga ctgttaagag tattaaattg tcaccatgtt cggctgagag gatcatgccc
    10381 tgactgagca agcccatcat cttacgtggc ttgaggttgg caacgatttg gactttcttg
    10441 ccgaccaact cctgctcgtt cggatagaac ttggcgatac cagacaggat ttggcggtct
    10501 tcgccatcac ctgcgtccag gcggaatttg agcagcttgt cagaaccctc cactttggct
    10561 acttccttga cttcggccac acggatttct accttgtcga agtcctcgaa cttgatcgca
    10621 gctttttcgt ttttgagttc cacgtcagct gggttccact ctttttcttc ctcttgggaa
    10681 atagcagagc tgccacccat ttgagcttgg atataggcga tttcctcttc catatccaga
    10741 cgtgggaaga taggcgttcc ttttgcgacc actgtcaaac ctgctggaag acctgcaaag
    10801 tcaagatttt caaggtcaaa tgctgttccc aaaccaagtt gttccataat agcattagac
    10861 gtcgtcatca taaatggttg aatcaaatgt gccaccacac gaagacctgc tgtcaagtga
    10921 gccatcaccg ctgccaactt gtcacggtcc gcttcgtcct tagccaagac ccaaggtgca
    10981 gtttcatcaa tgtacttgtt ggtacgggag atgatattcc aaacagcttc cagagcgcgt
    11041 ggatagtcaa cagcttccat atacttgtgg tagcttgcca agttgtcagc tactactgcc
    11101 gccaagtccg catcaaaatc agtcacgtta gcaacaaagg ttggtacctg accgctgaaa
    11161 tacttattaa tcatagcaac cgttcggttg agcaagtttc caaggtcatt ggctagttcg
    11221 tagttgatac ggccaacgta gtcttctggc gtgaaggttc cgtcagagcc aactggcaga
    11281 ctacgcatga ggtaatagcg gagcggatcc aaaccaaaac gctcgaccag catttctgga
    11341 tagaccacat tgcccttaga cttggacatc ttgccatctt tcatgacaaa ccagccatga
    11401 gcaaccaaga ggtctggcaa cttcatatcc aacatcatga gcatgattgg ccagtaaatg
    11461 gagtggaaac gaagaatgtc cttgccaacc atgtggtaaa ctgttccatt ccagaacttg
    11521 tcgtaattaa ttgtttcttc ctgaccataa cccaaggcag ttgcgtagtt gagcagggca
    11581 tcaatccaga catagacaac gtgtttagga ttggacggaa caggcacgcc ccaagtaaat
    11641 gaggtacggg acactgccaa atcttccaag cctggctcga tgaagttttt catgatttca
    11701 ttcatacgac catctggctg gataaagtct gggtgagcat tgaagaactc gaccaactta
    11761 tcctgatact tgctgaggcg aaggaagtag gattcttctg aaacccaggc aacctcgtgg
    11821 ccgctcggag cgataccgcc tgttaccttg ccgttttcat ctcggaagac ctcttctaat
    11881 tggctctcgg tgaagaattc ctcgtccgat acggagtacc aaccagaata ctctcccaag
    11941 taaatgtcgt cctgcgccag caatttttca aaaacagccg ccaccacttc ctcgtggtaa
    12001 tcgtcggttg tgcggatgaa cttgtcgtac gagatgtcga gcaagttcca gagctcttta
    12061 acgccaaccg ccatgccgtc aacgtaggct tgaggtgtca aaccagcttc ttttgccttc
    12121 tcctcaatct tctgcccatg ctcatcaagc cctgtcagat agaagacctc gtggcccatg
    12181 agacgcttgt agcgagccaa gacatcacag gcaatggtcg tgtaggctga accgatgtga
    12241 agttttccag acggataata aatcggtgtg gtgatataaa acggtgtttt tgtcatactt
    12301 tttcctttca actcagggca aatgaaaccc tgttcttgat aacaccccat tttatcatat
    12361 tttcagctaa atcacaaaat ggttctaact acaattcttc ctctatctat gctatactat
    12421 gatacaactc aaacagaaag aggtcatcta tgtttacaaa gaaaaatatt cttactcatc
    12481 tctttttcct catcatagca gtcggactaa aacggtacgg tgtcacagca cctgacttga
    12541 catggaatat gttcttggca ttggtagcac ttgattttgc aatccttacc aatcatacaa
    12601 agtcccatat cctcaaagtg atagcaggtc tcctctggct ctttttctac cccaatactt
    12661 tttacatggt gacagacatc gtccatatgc actttgccaa cacagtacta tggcaacgag
    12721 aaagcatgat tctatttatg ctttatgttc caagtatttt ctttggggtc atggctggcg
    12781 ttgaaagtgt acgacttatt ttctctgctt tttctatcaa atcctactgg ctaaaactgt
    12841 ttatgattag tggtctttcc ctactatcca gctttgccat tcatatcgga cgatatgcaa
    12901 gactgaattc atgggacatc tttaccagac caactgtcgt tattgatgaa atgcttgcag
    12961 ttatttcgtg ggatgctctc ccctttatcc tcggcttcac ctttatccaa attatggttc
    13021 ttgtcttttc aataaatgaa taagattttt atctcatagc cattatcttc aagcatcttc
    13081 ctgcactcaa ggactatcgt tccttttggg aagatttttc aaggacataa acaaaatttt
    13141 ttgataaatt tatatcttct ccgtttctct ccattacatt tttatccaaa ctgtatgagg
    13201 caaaaatcgt taacctattg taagtaaaat ttcttaaatt tcct
//
LOCUS       DASGBY010000052        13236 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.052, whole genome shotgun sequence.
ACCESSION   DASGBY010000052 DASGBY010000000
VERSION     DASGBY010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13236
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.052"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..479
                     /locus_tag="U1396_001103"
     CDS             <1..479
                     /locus_tag="U1396_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM5342298.1"
                     /translation="KMLATCILFNFVGAVLVCYLVSLTLPYQHVDAHSYLFEATVAKL
                     SKTPLTQFIEGIFANIVVNIGVFTFLRIKDDAGRLISVIFIIFIFAFLGYEHVIANFS
                     LFSLAFFSNGGPVEGMTLLSVLSNFLFSGLGNYVGGGLFIGLLYSWLNNQSKLYVD"
     gene            complement(513..1208)
                     /locus_tag="U1396_001104"
     CDS             complement(513..1208)
                     /locus_tag="U1396_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HEM5342299.1"
                     /translation="MTELFSNPIFGIMLSIAAYLIGMLIYRRFPHPITTPLLVATGLI
                     IVFLKMTGISYKEYYAGGSYLNMLIVPSTVALGIPLYRSFHLMKHHIRSILLGIFVAC
                     IVNTVFTALIAKWFGMDFFLAISLFPKSVTTAMAVGITDKMQGIATVTLVVVVATGIL
                     TSVLGPVFLKLLKIEDPVAVGLALGGTGHAIGTGTAIKYGHTQGAMAGLAIGITGIMY
                     VVISPIVAQIILQ"
     gene            complement(1201..1581)
                     /locus_tag="U1396_001105"
     CDS             complement(1201..1581)
                     /locus_tag="U1396_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HEM5342300.1"
                     /translation="MKLYVQFMIILVFSFLGEAISTIFHLPIPGSIIGLILLFLALKF
                     KLIRLRHIHTVGNFLLANMTILFLPAAVGIMERFDAIKDYLLPIIVVILGAIFLNILV
                     IGFVVQFVKQKFEGDYIDTEGIHD"
     gene            1875..2201
                     /locus_tag="U1396_001106"
     CDS             1875..2201
                     /locus_tag="U1396_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5342301.1"
                     /translation="MHFPVPAVLTEFLIMAILESDDSYGYEICQTIKLIANIKESALY
                     PILKRLEQNDFLTTYSQEYQGRMRKYYSLTQLGHEELVRLKDDWDTYTNTINGIIEGS
                     VRHDKN"
     gene            2188..2943
                     /locus_tag="U1396_001107"
     CDS             2188..2943
                     /locus_tag="U1396_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM5342302.1"
                     /translation="MTRTEYMEQLEKYLKKLPHKEYFEAISFFNEYFDEAGPEHETEI
                     IEELGSPKEAASELINNMLNKQIQEEKDQQEPIQLNWKLWVGLGALSMTGLFSFFLLF
                     IMGEFIGVIPLFATLILGAFFLGRYFRNFSQTKRTLWLAILAVISLPIAIPLLLILLA
                     SLLGLVALILALIVGAFVLGVGLLTSGGYLIWEAFSLMSEGFNIFLMGFGSGLSLIGG
                     AILIYILTGFFAYWSWRLVKACFKWILKRGKRA"
     gene            2940..3998
                     /locus_tag="U1396_001108"
     CDS             2940..3998
                     /locus_tag="U1396_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5342303.1"
                     /translation="MKKKLTIAIIIGFVSLIAGLILAGIGFFTGGITRLEEVAAPTEV
                     HKTFTDLNTIKIDFIPHSVYIKESSDNNYHVTYANSDNNIQNPLKLSEKDGVLTLSAQ
                     ELKFAIEGIMQYLGERLAQRRINVFSVTIEVPKGKTLDKLEGEGLHFYEYGSFVIENV
                     HIKEIDLSGGVDLDKVTIDSGKITAGYFEAVNSALRNTSISANESSVNLIETSLENVT
                     IEGYSQLDSRQTTLLGDNRFTPSYTYSSTTFLDVTDKSLADSNLLITNQIDKKKLVEA
                     QGYYYEDGNDLGEMVNQDPYLKERLGEVGIFTSDKYTKFPVKTENDLQTLTLENKGSK
                     NKLTIEATNATINLGTPK"
     gene            complement(4048..6507)
                     /locus_tag="U1396_001109"
     CDS             complement(4048..6507)
                     /locus_tag="U1396_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM5342304.1"
                     /translation="MSEKVKNFFTRPMTLITIIGIACVPALYNISFLTSMWDPYGRLD
                     QLPVAVVNQDQSATFQDKTLTIGDDMVDNMKESKSLDFHFVSEKDAEKGLEEGDYYMV
                     ITLPEDLSEKASSLLTDQPEHLAIPYQTSKGHSFVASKMSESAMEKLKASVSETITET
                     YTSAVFDSMGEIQSGMVEAADGSQQLTDGASQLETGSQTLSLGLSTLSSSGQLLVTGA
                     NQLVTGVVSYTDGVNQAATGSQTLSSGLTTYTNGVASLASGAEQLNANSSQLIAGVGQ
                     LQSGASQVEQLVTGANQLQAGLEQLASSTSLSVEQSSQIQALLTRLPQLQAAINQLND
                     SLSSIGGLAVDTSTLSSLLTEMGAQAQGLLTAAQADKTASIEALQATATYQNLTADQQ
                     AELVGALQNSPSTTVTVAQTILGQLSQLSQALSSLQSLSGMATQMSQLQSAIGQINTA
                     ANQALPGATTAIENLSSGLSQVNTALNQQVLPGTQALTSGVSQLKTQLSNGASQLMSG
                     VTVYTAGVAQLAAGGAQLVANNSSIQSGDGQLTSGLATLASNSSQLVSGSGQLASGSQ
                     QLISGAEQLASGGQTLTSGISSLRTGSETLTNSLSSASQQLSVVSVEDKNAQAVSQPV
                     TLEHSDQDDVKTNGVGMAPYMVSVALMVAALSANVIFVKHIDNRSYKNRWDWAKGKLL
                     LNGIIASLAAVILYGVLRLIGIDPAHPMATLGLILLASWTFMALVTALVGWNNRFGSF
                     ASLILLLLQLGSSAGTYPIELSPRFFQVIQPYLPMTYSVSGLRQTISMVGNSSHQVWM
                     LSLFLVGFMGLGLLIYNQKDE"
     gene            6632..7165
                     /locus_tag="U1396_001110"
     CDS             6632..7165
                     /locus_tag="U1396_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEM5342305.1"
                     /translation="MGTDNRKERTRQAILEAMVTCLDTQGFNEITATHLAQTAGISRS
                     SFYTHYKDKYELIDSYQQGLFHTLEAIFDRYDGNRHSSFLEIFELLYREKLLSSLLTH
                     NGTQEIQNFLINKVRLLIANDLAERLGKEDLSPLEKEYRSIYFSHAFFGIMQVWIKNG
                     KQESPQYMTDFLIKMLP"
     gene            7250..8233
                     /locus_tag="U1396_001111"
     CDS             7250..8233
                     /locus_tag="U1396_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5342306.1"
                     /translation="MIQAEHLSKTYSIIDKEVGLKGSIKAFFKPKKKSIPAVQDISLQ
                     VGKGEIIGYIGSNGSGKSTTIKMLTGVLYPDQGQVRINGLNPQEHRKEVNKQIGVLFG
                     QKSHLDWNLPVQESFILHAKIYDVPDKVFKERLAVLIDLLDLDDIMKQPIRNLSLGQR
                     VRCEFAAIFIHQPAVVFLDEPTIGLDASVKETIRSFIRYMNQEYQTTFLITSHDMKDI
                     ESLCERIFIIDKGKKVYDGSLTVLKERFSTVKTILFSTEKPIEKDLQLDGWEFEQLDD
                     FHFEIHYQSKVWTSAQVIEQVFNHYAIEDVTMKELEIETMVRQIYEEGIHA"
     gene            8226..9005
                     /locus_tag="U1396_001112"
     CDS             8226..9005
                     /locus_tag="U1396_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM5342307.1"
                     /translation="MRKYLYMTRLTMMNAMQYKAFFLATFVSLAVKILVALYVWKTIF
                     FTQSEVNGFTLQTFTTYIIFANLLASLNSFSLGEDLSYSILKGSIAGEFLRPYSFILA
                     LFFKDLGNKLLELIKFAIVFIGIILVHQDFYLPDGKTILLFLVSSILGMFIVQLLDMA
                     FGFLAFFTVNAWGVMLLRMGLFNLASGALLPLSFYPQAVENFLKLLPYNYAVNVPVSI
                     LLGQESDLTALGLQVIWIPILACFIALLWSQAKRRIVIFGG"
     gene            9007..9789
                     /locus_tag="U1396_001113"
     CDS             9007..9789
                     /locus_tag="U1396_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM5342308.1"
                     /translation="MKKYISLYLYNIKVYMMAQMSFRVDFFIGLFSSLIEQIVYLIFL
                     NILFGNIKEIAGFNYGQMLFIYGIATVGRSIHLIFFDNLWMFGSRYIRQGEFERLLLM
                     PVNPLFQLICERIQPQGIGTTLIGTIALVQASNELGMEWSLGKLALLIFIAICIGLLY
                     AAIQLGPTALAFWIVESFPLTMGIFALNQMAQYPLNIYPKIIQILLIFVFPYAFTAYF
                     PALYFLDLSMWGLALPLVVLVLFTINYKLFRYGMTKFTSVGN"
     gene            complement(9839..10666)
                     /locus_tag="U1396_001114"
     CDS             complement(9839..10666)
                     /locus_tag="U1396_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5342309.1"
                     /translation="MTVRLIATDMDGTFLDSQGSFDRERFSRVLDQLDQKKIPFVIAS
                     GNGIGRLLQLCQGFEDRLIFVADNGAHVYQNGKTVIRRAIQQVEVEAILHFFKGRWAD
                     VCLMLSNDENIYMQAGAGMPFAGTDLPIEPAQMATFQNRVTYLDDLSAYPISEPIYKV
                     GLWVPEVRVESITEEFNQAFQGRLTAVTSGYGSIDILTEGIHKAWGLEQVLTSLDIEP
                     EQVMAFGDSDNDIELLSYVGHSYAMENATDKVKAVAKYRAPSHLEAGVLQVIEEYIL"
     gene            complement(10678..11910)
                     /locus_tag="U1396_001115"
     CDS             complement(10678..11910)
                     /locus_tag="U1396_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM5342310.1"
                     /translation="MEKRANYIRRKRYASYRTKMHLFFICGLATIILAIIIVSEHLVP
                     RLNQASESMHSDNSVRIMAHGDLLYHLPILRGAEQPDGSYDFSENFTYVKPWIEQADF
                     AIADFEGTISPDFELAGYPLFNAPAIVANNIHDAGYDLVDLAHNHILDSHLSGLISTV
                     NTFRDAGVDTVGVYAEGNCATAPLYIREVNGIRIAVLAYAYGFNGMEVLLSQEEYDAY
                     LSDFDKEKMRAEIERAEKEVDITIVMPQTGVEYQLEPTEEQTSLYHQMIDWGADIVLG
                     GHPHVVEPAEIIEKDGQRKLIIYSMGNFLSNQRIESMDDTPNSQWTERGVLMDIRIQK
                     ENGQTSIRTAQAHPTWVNRISQGTYSQDGYERFSYQTYVLEDWVAGGRYYGQLDLDTQ
                     ARVDTAYQEMKDFVNLVW"
     gene            complement(12243..13181)
                     /locus_tag="U1396_001116"
     CDS             complement(12243..13181)
                     /locus_tag="U1396_001116"
                     /EC_number="1.3.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate oxidase"
                     /protein_id="HEM5342311.1"
                     /translation="MVSTATTLGGFTFDNCLMNAAGVWCMTKEELDAVKNSKAGTFVT
                     KTATLDYRAGNPEPRYQNVPLGSINSMGLPNQGLAYYLDYLLELQETEPERTFVLSLV
                     GMSPDETHEILRTVEASDFKGLIELNLSCPNVPGKPQIAYDFETTETILQEVFTYFTK
                     PLGIKLPPYFDIVHFDQAAAIFNQFPLKFVNCVNSIGNGLYIKDESVVIKPKNGFGGI
                     GGEYIKPTALANVHAFYQRLKPEIQIVGTGGVLTGRDAFEHILCGASMVQVGTTLQKE
                     GVAAFERITAELQAIMAEKGYETIEDFRGKLQHLDD"
BASE COUNT         3851 a         2983 c         2523 g         3879 t
ORIGIN      
        1 tcaagatgtt ggcaacctgt atccttttca actttgtcgg tgctgtcctt gtttgttact
       61 tggtctcact gactctgcct tatcagcacg ttgatgctca cagctaccta tttgaagcaa
      121 cggtggccaa gctttcaaag acacctttga ctcaatttat tgaaggaatt tttgctaata
      181 ttgtcgtgaa tatcggcgta tttaccttct tacgcatcaa agatgacgct gggcgtctca
      241 tttccgttat tttcatcatc tttatctttg ctttcttggg atatgagcac gtcatcgcaa
      301 acttctctct tttctcatta gccttcttct caaatggtgg accagttgag ggaatgactc
      361 tattaagtgt actaagcaat ttcctctttt ctggattagg aaactacgtg ggtggcggtc
      421 tctttatcgg acttctttat agttggttga ataatcaatc caaactttat gtagactaaa
      481 aaaactacgg ttggaattcc aatcgtagtt ttttattgta agataatctg cgcaactatt
      541 ggactaatca ccacatacat gatgcctgta atcccaatag ccaagccagc catcgctcct
      601 tgcgtatgtc catattttat cgctgtaccc gttccaatgg catgtcctgt tcctcccaaa
      661 gcaagaccaa cagctaccgg gtcttcaatt tttagtagct ttaaaaagac tggaccaaga
      721 acacttgtca gaattcctgt tgcaacaacg actacaagag taacagttgc tattccttgc
      781 attttatcag taataccaac agccatagca gtggtgactg attttggaaa aagagagatt
      841 gctagaaaaa aatccatccc aaaccatttt gcaattaggg cagtaaagac agtattgaca
      901 atacaggcaa caaaaattcc taaaagaata cttcgaatgt gatgtttcat tagatggaaa
      961 gaacgataca aaggaatacc cagagctact gttgaaggca caataagcat atttaggtag
     1021 gaccctcctg cataatattc cttataggaa atacctgtca tttttaaaaa gacaataatc
     1081 aatcctgtag ctaccaacag tggggttgtg attggatgag gaaatctccg ataaatcagc
     1141 attccaatta aatatgctgc aattgataac ataataccaa aaataggatt tgaaaaaagt
     1201 tcagtcatga attccctccg tatcaatgta gtcaccttca aacttttgct tcacaaattg
     1261 aacaacaaaa ccaattacta agatatttaa aaaaatggcg cctaaaatga cgacgataat
     1321 aggaagtaaa taatctttaa ttgcatcaaa tctctccata atgcccactg ctgcaggcaa
     1381 aaaaagaatg gtcatgttag ccagcaaaaa attcccaacc gtatgaatgt ggcgaagacg
     1441 aatcaatttg aactttaggg ctaaaaatag gaggatcaag ccaatgatac ttcccggaat
     1501 aggaagatga aaaatagtcg aaatagcttc ccctaaaaat gaaaatacca gaataatcat
     1561 aaactgaaca tatagtttca tctttacacc accttaaata ctactaatcc atctgaggtc
     1621 attctctttt agtccagaaa ttcccttaat gttagtactg ttattaagtt tactactctg
     1681 aaattatttt tcaaggctat aaaacgttta caccttaaaa atttgtccta agctatttta
     1741 tttattttgc acataatcac ttgacaattt atttctgtag gtgtatattt aatatataac
     1801 aaaatttgat atatacaaac gaacattata tatcaaaacc gaacctaact aacaacaaag
     1861 gaaaggagcg tcctatgcat tttccagtcc ccgcagtgct gacagaattt ctcatcatgg
     1921 ctattttgga atccgatgat tcttatggct atgaaatctg tcagaccatt aaattaattg
     1981 ccaatatcaa ggagtccgcc ctctatccca tcctaaaacg attggagcaa aatgactttt
     2041 tgactactta ttcccaagaa tatcagggtc gtatgcgcaa gtattatagc ctaactcagt
     2101 taggtcacga agaattggtc cgactcaaag atgactggga tacctataca aacacgataa
     2161 acggcatcat agaagggagc gtccgccatg acaagaactg aatacatgga gcagttagaa
     2221 aaatatctca aaaaactgcc ccacaaagaa tactttgaag ccatcagctt ctttaatgag
     2281 tattttgacg aggctggacc agagcatgaa acagaaatta tagaagaact tggttcacca
     2341 aaagaagctg ccagcgaact cattaacaac atgctcaaca agcaaatcca ggaggagaaa
     2401 gatcaacaag aacctattca actcaactgg aaactctggg ttggtctggg agccttaagt
     2461 atgacaggtc tcttctcttt cttcctactc tttatcatgg gagagtttat cggagtcatt
     2521 cctctgtttg cgactcttat cctcggcgcc tttttcctcg gtcgctactt ccgtaatttt
     2581 agccaaacaa aacgaacgct ctggttggct atcctagctg tcatttccct gcctatcgct
     2641 attccacttt tgctcattct cctagctagt ctattgggat tggtggcgct catcttggcc
     2701 ctcattgtcg gtgcctttgt tttgggtgtc ggacttctca ccagcggtgg ctatctgatt
     2761 tgggaagcct ttagccttat gtcagaagga ttcaatatct tcctcatggg gtttggctca
     2821 ggtttgtctt tgattggcgg agctattctc atctacatct tgactggatt ttttgcctac
     2881 tggtcttggc gactggtcaa ggcttgcttc aaatggatct tgaaacgagg taaacgagca
     2941 tgaaaaagaa acttaccatc gccattatta tcggctttgt cagcctgatt gcaggcttaa
     3001 ttctagctgg cattggattt ttcactgggg gcataacccg cttagaagag gttgctgctc
     3061 cgacggaagt ccataagacc ttcacagatt tgaataccat taaaattgat tttatccccc
     3121 acagcgtcta catcaaagag tctagtgata acaactatca tgtgacctat gccaactccg
     3181 acaacaatat ccaaaaccct ctaaaactca gtgagaaaga cggcgtctta accctctctg
     3241 cacaggaact aaaatttgcc attgagggaa tcatgcagta tctgggagaa aggttggccc
     3301 aacgtcgcat caatgtcttc tcagtcacca ttgaagtgcc taaagggaag acactggata
     3361 aattagaggg agagggtctc cacttctatg agtatggtag tttcgtgatt gaaaatgtcc
     3421 atatcaaaga aattgacctt tcaggtggtg tcgatcttga caaggtgact attgacagcg
     3481 gtaaaatcac agctggttac tttgaagctg tgaattctgc actcagaaat acctctatat
     3541 ctgcaaatga atcttcagtc aatttaatcg aaaccagttt ggaaaatgtg accatcgagg
     3601 gctatagcca gctggatagc agacaaacga ctcttcttgg cgataatcgt ttcactccat
     3661 cctacaccta ctcctctacg acatttttgg atgtgacgga caagagtctg gcagatagca
     3721 acttgctcat caccaaccag atcgacaaga aaaaattagt agaagcccaa ggttactact
     3781 atgaagatgg gaatgatttg ggagagatgg ttaaccaaga cccttactta aaagagcgac
     3841 taggggaagt cggtattttc actagcgata agtacaccaa attccctgtc aagacagaaa
     3901 acgatctaca gaccctaacc ctagaaaaca aaggtagcaa gaacaaactg accattgaag
     3961 ccaccaatgc gacaatcaat ttagggaccc caaaataatt acatcaacca aaaaccaact
     4021 gttcacatgg agcagttggt tttattctta ttcatctttt tgattataaa tcaagagacc
     4081 tagtcccata aagcctacta agaagagact tagcatccaa acttgatgac tactatttcc
     4141 aaccatagaa atggtttgac gaagacctga aacagaatag gtcattggaa gatagggctg
     4201 aatgacttgg aagaagcgtg ggctgagttc aattgggtag gtccctgcgc ttgagccaag
     4261 ctgtagtaac aagagaatta agctggcaaa ggatccgaaa cgattgttcc aacccaccag
     4321 ggctgtaacg agggccatga aggtccaaga agctaagagg attaatccca aggttgccat
     4381 tggatgagcc ggatcgattc caatcaagcg aagaacaccg tacaaaatca ctgctgctag
     4441 actggcaata ataccattga gcaagagttt tcctttggcc cagtcccaac gattcttgta
     4501 ggagcgatta tcaatgtgtt tgacaaaaat aacattcgct gataaggctg caaccattag
     4561 ggcaacagac accatgtaag gagccatgcc gacaccgttg gtcttcacat catcttggtc
     4621 actgtgttcc aaggtgactg gttgagaaac cgcttgtgca tttttgtctt ctacagagac
     4681 gactgatagt tgttgactgg ctgagctgag tgaattcgtt agggtttcac tacctgtacg
     4741 aagactggaa ataccacttg tcaaggtttg accgccacta gccaactgtt ctgcaccaga
     4801 aatcaattgc tgactaccag aagccagttg tcctgaacca ctgacaagtt gactggagtt
     4861 ggatgctaag gttgccaatc ctgatgttaa ctggccatct cctgattgaa tactactatt
     4921 attcgcaacc aactgggctc cacctgcggc taattgagca acacctgcgg tgtagactgt
     4981 tactcctgac atgagctgac ttgctccatt tgataattgc gttttaagtt gactcacacc
     5041 actcgtcaag gcttgagttc ctggtagaac ttgctggttc aaggcggtat tgacctgact
     5101 caaaccactt gataggtttt caatggctgt tgtggcgcct ggcaatgctt gattggcagc
     5161 cgtgttgatc tgaccgatag ctgattgtag ctggctcatt tgtgttgcca tgccagaaag
     5221 actttgtaag cttgataagg cttgactgag ttgcgacaat tgacccagaa tcgtttgggc
     5281 tactgtcact gttgtcgaag gtgaattttg aagggcacca accaattcag cttgctgatc
     5341 agctgtcaag ttttgatagg tagctgttgc ttgcaaggct tcaatgctgg ctgttttatc
     5401 agcttgggct gctgtcaaca atccttgggc ctgagccccc atctccgtca agaggctaga
     5461 tagagtagag gtatcgactg caagtcctcc gatacttgat aggctgtcat ttaattggtt
     5521 gatggccgct tgcaactgag gaagccttgt caagagtgct tgtatctgac tagactgttc
     5581 aacagacaaa ctagttgaac tagcgagttg ttccaagcct gcctgcaatt gattggctcc
     5641 cgttacaagt tgttcaacct gacttgctcc tgattgcaat tgtcccactc cagcgatgag
     5701 ctgagaggaa ttggcattta attgctccgc acctgaagca agactcgcta ccccatttgt
     5761 gtaggtggtt aagccactgg acagtgtttg actgcctgtt gcagcctgat tgactccatc
     5821 tgtataagac acaactccag taaccaattg gtttgctcct gtcacgagta attgtcctga
     5881 tgatgataag gtagataggc ctaatgatag agtctgactt ccggtttcta actgactagc
     5941 tccatctgtc aattgttgac ttccatctgc cgcctcaacc ataccagatt gaatctctcc
     6001 catgctgtca aaaacagccg aggtgtatgt ttcagtaatc gtctcggaaa cagatgcttt
     6061 caatttttcc atagctgatt cactcatctt tgaggcgaca aagctgtgac ctttagatgt
     6121 ttgataggga attgctagat gctctggctg gtccgttaag agactagaag ctttttctga
     6181 caaatcttct ggtagggtaa tgaccatata atagtcccct tcttccaaac ctttttctgc
     6241 atctttttct gatacaaagt ggaaatccag actcttgctt tccttcatat tatccaccat
     6301 atcatcacca atggttaagg ttttatcttg aaaggttgca gactgatctt ggtttacaac
     6361 tgctacaggt agctgatcca atcgtccata aggatcccac atagaggtta ggaaactaat
     6421 attgtataag gccgggacac aagctatacc aataatggta atcaaggtca ttggtctagt
     6481 gaaaaaattt tttacttttt ctgacataaa aactccttta gacatcctgt ccaaaaactg
     6541 ataaaataca ttatacaagt atcattttca aaatcaagta ggaagaatcg tttttagaca
     6601 atgtgtctaa aaatgttcaa aaggagagaa tatgggaaca gataatcgaa aagaacgaac
     6661 tcgtcaggcg atattagaag caatggtgac atgccttgac acccagggat ttaatgagat
     6721 tacagccact caccttgcac aaactgctgg tattagtcgg tccagttttt atacccacta
     6781 taaggataag tatgaattaa ttgactctta tcaacaaggt ctctttcata cattggaggc
     6841 tatttttgat cgctacgatg gtaatcgtca ttcatcattc ttagaaattt ttgaactact
     6901 atatcgtgaa aaattattgt catccttatt gacccataac ggaactcaag aaatccaaaa
     6961 tttcctcatc aacaaagtta gattattgat cgcaaacgat ttagctgagc gtttgggaaa
     7021 agaagattta tcaccacttg aaaaagaata tcggagtatc tacttttccc acgccttctt
     7081 cggtatcatg caggtatgga ttaaaaatgg taagcaagaa tctcctcaat atatgaccga
     7141 ttttctaata aaaatgttac cttaaaggtg actttttacc gccactttct ggggaatatg
     7201 ttataatatt cttatcttac gcaaacgttt tcaaatagga gattatgata tgattcaggc
     7261 agaacatctt tcaaaaacct attcaatcat tgataaggaa gtcggtctaa aaggctctat
     7321 caaggccttt ttcaagccaa agaaaaagtc aatccctgct gttcaagaca tttccttaca
     7381 ggtaggaaaa ggagaaatca tcggctatat cggctccaac ggttctggta aatccaccac
     7441 catcaaaatg ctaactggag tcctctatcc agaccaagga caggttcgta tcaacggact
     7501 caatccgcaa gaacaccgta aagaagtcaa taagcaaatc ggcgttctct ttggacaaaa
     7561 atctcacttg gattggaact tacctgtcca ggaatctttt atccttcacg caaaaattta
     7621 tgatgttcca gataaggtat tcaaagagcg attggctgtc ttgattgatc tattggactt
     7681 ggatgatatt atgaagcaac caatccgtaa tctgtcactc ggccaacgag ttcgctgtga
     7741 atttgcggct atctttatcc accagcctgc tgttgtcttt ttggacgaac cgaccatcgg
     7801 cttggatgcc agcgtcaagg agaccattcg ctccttcatc cgctatatga atcaagaata
     7861 ccagaccact tttttgatta cttcccatga tatgaaggac atcgagagcc tctgtgagcg
     7921 gatttttatc attgataagg gcaagaaggt ctacgatggt tcactgaccg tcctcaagga
     7981 acgcttttcc acagttaaaa ccattctctt ctccacagaa aaaccaattg aaaaagactt
     8041 gcagttggat ggctgggagt ttgagcagtt ggatgacttc cattttgaaa tccattatca
     8101 aagcaaggtt tggaccagtg ctcaggtgat tgagcaagtt ttcaatcatt atgccattga
     8161 agatgtcacc atgaaggaat tggaaattga aaccatggtc cgtcagattt atgaggaggg
     8221 tatccatgcg taaatatctc tacatgaccc gcctaaccat gatgaatgct atgcagtata
     8281 aggctttctt tctggctacc ttcgtttcac tggcagtgaa gattttggta gctctctatg
     8341 tctggaaaac cattttcttc actcaatcag aagtcaatgg ctttaccctg caaaccttta
     8401 ctacatatat catctttgct aatctactag ccagtttaaa ttctttctca ctcggagaag
     8461 atttgtccta cagcatttta aaaggaagca ttgctggaga atttctcaga ccctattcct
     8521 ttatcctagc cctctttttc aaagaccttg gaaataagct cttggaactg ataaaatttg
     8581 ctatcgtatt tatcggtatc atacttgttc atcaggattt ttatctacct gacggaaaaa
     8641 ctattttact ctttctagtt agctccatcc tcgggatgtt tatcgttcaa ttactggata
     8701 tggcttttgg cttcttagca ttttttacgg tcaatgcctg gggagttatg ctcctgcgaa
     8761 tggggctttt caatctagcc tctggggcgc ttttgccact cagcttctat ccacaggctg
     8821 tggaaaactt tttgaaactc cttccctata attatgcggt taacgttcca gtttccattt
     8881 tattgggaca ggaaagcgat ctaactgctt tgggattgca agttatatgg atacccattc
     8941 tagcctgctt catcgctcta ctctggtccc aggccaagcg tcgtattgtc atttttggag
     9001 gttaacatga agaaatatat cagcctctat ctatataaca tcaaggtcta catgatggcc
     9061 cagatgtcct ttcgagtgga cttcttcatc gggcttttct cctctttgat tgaacaaatt
     9121 gtctacctga ttttcctcaa catcctcttt ggaaatatca aggaaatcgc tggttttaac
     9181 tacggtcaaa tgcttttcat ctatggaata gcgaccgtcg gacgctccat tcacttgatt
     9241 ttctttgaca atctctggat gtttggcagt cgctacatcc gacaaggcga atttgaacgc
     9301 ctcctcctca tgcctgtgaa cccacttttt caacttatct gtgaacgaat tcaacctcaa
     9361 ggaatcggaa caactctcat cggtacgatt gcactagtcc aagcttcaaa tgagctaggc
     9421 atggaatgga gtcttggaaa actagcctta ctaatcttta ttgccatttg tatcggccta
     9481 ctctatgcag ccattcaact cggtccaacc gctctagcat tttggattgt ggaatcattt
     9541 cctttgacta tgggaatttt cgccctcaat cagatggctc aatacccact caatatctat
     9601 ccaaaaatca ttcaaatcct gctgatattt gttttccctt atgcttttac agcctatttc
     9661 ccagccctct acttcttaga cctgtctatg tggggactgg ctctgccact ggttgtccta
     9721 gtcttattta ccatcaatta caaactcttc cgctatggta tgaccaaatt caccagtgtt
     9781 ggaaattaaa aaaagctagt attctctgga ttgagagcac tagctttttt ctatatactt
     9841 ataaaatata ttcttcaatg acctgaagca caccagcttc caaatggctg ggagctcggt
     9901 acttggctac tgccttgacc ttgtctgtcg cattttccat ggcataggaa tgcccaacat
     9961 aggacaataa ctcaatatca ttgtctgaat caccgaaggc cattacctgt tcaggttcga
    10021 tatctaaact ggtcaaaacc tgttccaagc cccatgcctt atgaatccct tctgtcaata
    10081 tatcaatgga gccatagcca cttgtcactg cagtaagacg accttgaaaa gcctggttaa
    10141 actcttccgt tatcgactcc acacgcactt caggaaccca gagaccaacc ttataaatcg
    10201 gctcagaaat aggataggca ctgaggtcgt ctaaatatgt cacacgattt tggaaggtag
    10261 ccatctgagc tggttctatt ggcaaatccg tccctgcaaa cggcatacct gccccagcct
    10321 gcatataaat attttcatcg ttcgacaaca taagacatac atccgcccaa cgtcctttga
    10381 aaaaatgcag tattgcttcg acttccactt gctgaatagc ccgacgaatt actgtcttgc
    10441 cattttgata cacatgggct ccattatccg ctacaaagat taatctgtct tcaaatcctt
    10501 ggcataattg tagtaatctc ccaattccat tgccactagc gataacaaaa ggaatctttt
    10561 tctgatctag ttgatccaaa acccgtgaaa atcgctctct atcaaaactc ccctgactat
    10621 ctaaaaaggt cccatccatg tctgttgcaa ttaatcgaac tgtcatcttc tctctcctca
    10681 ccataccaaa ttgacaaagt ctttcatttc ttgataggct gtatccacac gcgcctgtgt
    10741 atctagatcc aattgtccat agtatcgacc accagcgacc cagtcttcca atacataggt
    10801 ctgatagcta aaacgctcat atccatcttg tgaatacgtt ccctgagaga tacgattcac
    10861 ccaggttgga tgcgcttggg ctgtccgaat acttgtctgc ccattctctt tttgaatcct
    10921 tatatccatc aagactcccc gctcggtcca ctgggaattt ggtgtatcat ccatgctctc
    10981 aatacgctga ttggacagga aattccccat cgaatagata atcaattttc tctggccatc
    11041 tttttcaata atctctgcgg gctcgactac atgcggatgc ccaccaagaa cgatgtctgc
    11101 tccccaatca atcatttgat ggtacaaact ggtctgttcc tccgtaggct ccaactggta
    11161 ttccacaccc gtctgaggca tgacgatggt aatatctacc tctttctcag ctcgctcaat
    11221 ctctgcccgc atcttttctt tatcaaaatc cgataaatag gcatcatatt cctcctgact
    11281 cagcaaaacc tccatcccat tgaaaccgta agcataggct aggacagcta tacggatacc
    11341 attgacttcc cgaatgtaga gtggtgcagt tgcacaattg ccttcggcgt agacaccgac
    11401 tgtatccaca cctgcatctc taaatgtatt gacagtagaa ataagccctg atagatgtga
    11461 gtccaaaata tgattgtggg ctaagtccac caaatcgtag cctgcgtcat ggatattgtt
    11521 ggcgacaatg gcaggcgcat taaaaagtgg gtaacctgct aattcaaaat caggcgaaat
    11581 ggtcccttca aagtctgcta tggcaaaatc agcctgctca atccaaggct tcacataggt
    11641 aaagttttca gaaaaatcat aacttccatc tggctgttct gctcctcgaa gaattggtaa
    11701 atgatagagc aaatccccat gagccatgat gcgaacagaa ttatctgagt gcattgattc
    11761 tgaggcctga ttcagcctag gaactaggtg ctcgcttaca ataataatcg ccaagataat
    11821 agtcgctaag ccacaaataa aaaacaaatg catctttgtc cgataggacg catatcgttt
    11881 tctgcgaata tagttcgccc ttttctccat acctttaccc tcatactcct taattaagaa
    11941 cctttgttca aaatacagtc agtagtccct caaaaaacta tttcttccat aaaagtacat
    12001 cacttataaa tagaggttct aatattagta tacgacattt ttgctaaaaa atctaaataa
    12061 aatcagaatt ccatctcaca aatatatgtt tccgactatg tattccattc ctcaaacgat
    12121 tatcagaccg atcttcacag accatttaaa aagaactaac atcatcccct cgttactccc
    12181 taaaagacta tctgggagaa cggtacaatg ttagcttctt tttacgtctt caacagatga
    12241 ttttaatcat ctaagtgctg tagcttgcca cgaaaatctt caatggtctc gtagcctttt
    12301 tcagccatga tggcctgcaa ttcagccgta atgcgttcaa aggctgccac accttccttt
    12361 tgcagggttg ttccaacttg aaccatgctg gcaccacaga gaatatgttc gaaggcatcc
    12421 cgacctgtca agacgccacc agtcccaaca atctgaatct ccggtttcaa gcgctggtaa
    12481 aaagcgtgga cattggcaag agcagtcggc ttgatatact ctccaccgat accaccaaaa
    12541 ccatttttag gcttgatgac aactgactca tccttgatat agagaccatt tccaatcgaa
    12601 ttgacacagt tgacaaactt caaaggaaac tggttgaaaa tcgctgctgc ttggtcaaaa
    12661 tgcacaatat caaaataagg gggtaactta ataccgagtg gtttggtaaa gtaagtgaag
    12721 acctcctgca agatggtttc tgtcgtttca aaatcatagg caatctgcgg ttttccaggg
    12781 acattgggac aagaaagatt taactctatc agccccttaa aatcactggc ttctacagtt
    12841 ctcaaaatct catgagtctc atcaggcgac attccaacta aagataaaac aaatgtgcgt
    12901 tccggctccg tttcctgcaa ttctagtaga taatccaaat agtaagccaa gccctgattt
    12961 ggcaaaccca tcgaattgat agaaccaagc ggaacattct gataacgtgg ttctggatta
    13021 cccgcgcggt agtccaaggt tgctgttttt gttacaaaag tacccgcctt cgagttctta
    13081 accgcatcta attcttcctt ggtcatgcac caaacccctg ccgcattcat caaacaatta
    13141 tcaaaggtaa atccaccgag tgtcgttgct gttgaaacca tattatcctc catataggtc
    13201 attctttctt gattatatca taagaaacaa acggat
//
LOCUS       DASGBY010000053        13086 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.053, whole genome shotgun sequence.
ACCESSION   DASGBY010000053 DASGBY010000000
VERSION     DASGBY010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13086
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.053"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            146..2140
                     /gene="treP"
                     /locus_tag="U1396_001117"
     CDS             146..2140
                     /gene="treP"
                     /locus_tag="U1396_001117"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HEM5342312.1"
                     /translation="MGKFEKEAKQLLEAIGGKENVNAVTHCATRMRFVLADEKKANVK
                     VIEDIPAVKGTFTNAGQFQVIIGNDIPIFYNDFTAVSGIEGVSKEAAKSAAKSNQNAI
                     QRVMTMLAEIFTPIIPALIVGGLILGFRNVLEGVQMEWLGQAMKDGQLVFDADGNPVW
                     NTIVQVSPFWNGVNHFLWLPGEAIFHFLPVGITWSVSRKMGTSQILGIVLGICLVSPQ
                     LLNAYAVPGTDAATIASDWSWNFGAFSIARIGYQAQVIPALLAGLALSYLEIFWRKVV
                     PEVVSMIFVPFLSLLPAIILAHTVLGPIGWTIGQWLSTVVLAGLTGPLKWLFGAIFGA
                     LYAPFVITGLHHMTNAIDTQLIADAGGTGLWPMIALSNIAQGSAVFAYFLMNRHNEKE
                     AQVSLPATISAYLGVTEPALFGVNVKYVYPFVAAMIGSSIAGLLSVTFNIQAASIGIG
                     GLPGILSIKAEYWGAFFMTMIVAIVVPMILTAVFKRTGAFSKKEETVEEVVAPTEAVV
                     ETGAAIELISPLTGQTKELSQATDPVFASGVMGQGVLIDPTEGLLVAPVDGEISVLFP
                     TNHAVGITATNGVEFLMHIGMDTVGLEGKGFTAHVKQGDKVKAGDKLISFDIDVIKAA
                     GLVAETPVIVTNQTDFDTQVIGNLPRAISQGEAILTVTKN"
     gene            2221..3846
                     /gene="treC"
                     /locus_tag="U1396_001118"
     CDS             2221..3846
                     /gene="treC"
                     /locus_tag="U1396_001118"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HEM5342313.1"
                     /translation="MTIDKRKVVYQIYPKSYKDTTGNGVGDLRGIIEKLPYLKELGID
                     MIWLNPFYPSPQRDNGYDISDYTAVNPDFGTMADFEDMVAVGKELGIEFMLDMVLNHC
                     STDHEWFQKALAGDKYYQDFFILRDQPTDWVSKFGGNAWGPFGDTGKYYLHLFDVTQA
                     DLNWRNPHVREELFKVVNFWKDKGVKGFRFDVINLIGKDEVLEDCPINDGKPAYTDRP
                     ITHDYLKMMNNATFGSEKGFMTVGEMSATTIENCILYTAPEREELSMAFNFHHLKVDY
                     KDGQKWTIMDFDFEELKRLFHTWGEEMSAGNGWNALFYNNHDQPRALNRFVDVENFRN
                     EGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMDDYVDVESINAYQMLLDQGHTPE
                     QAFKIIQAKSRDNSRTPMQWDSSDNAGFSTGAPWLKAGKSYPTINVEQEKTGPIFTFY
                     QELIRLRKELPLISEGDYKAAYNDSQKVYAFERLLNGEKLLVLNNFFAEEVELDLADD
                     YAHGQVLISNYPDNKLGKKIILKPYQALAIQVK"
     gene            complement(4260..5384)
                     /locus_tag="U1396_001119"
     CDS             complement(4260..5384)
                     /locus_tag="U1396_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5342314.1"
                     /translation="MKRKRTNKPQHMRRKRKTPIMKNNKKMLYTSSLALSLFSTGMIS
                     TNVLAIEWAPRTVSEISPEIVQEEGKMTYTVQYGDTLSAIASAMNIDMDLLAKINQIA
                     DVNLIFPDTVLTTTVDLTTNQVTQVEIEAPVQGNTNETVQATVDLTTNQVTVEDTVVP
                     LDQISSVTDSAPVEEVVEQPVAEASVEEVVEQPVAEASVEEVVEQPVVEAPVEEVVEQ
                     PVVEAPVEEVAEQPVVEAPVEQPVVETPQVTALSTTTTSTSAYDVGLQPQVAAFRAEV
                     ANAFGITSFSGYRPGDSGDHGKGLAIDFMVPQSSALGDQVAAYAVVNLASKNINYIIW
                     KQRFYAPYDSIYGPAYTWNLMPDRGSVTENHYDHVHVSFN"
     gene            complement(5727..6710)
                     /locus_tag="U1396_001120"
     CDS             complement(5727..6710)
                     /locus_tag="U1396_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM5342315.1"
                     /translation="MEVQMKYKWATLGTGVIANELVQALQDMGGNLYSVANRTYDKGV
                     EFAQKYGIEKVYREIDEVFEDPEVDIIYISTPHNTHINYLRKALKAGKHVLCEKSITL
                     NSEELAEAIQLAEENQVVLAEAMTIFHMPIYRQLSEVIASGKLGDLKMIQMNFGSYKE
                     YDMTNRFFNKNLAGGALLDIGVYALSFVRWFMTEKPNQVLSQVKLAPTGVDEQVGILL
                     SNDAGEMATTALTLHAKQPKRGTIAYDKGYIELYEYPRGQKAVITYTEDGSQEVIEAG
                     ETARALSYEVADMEKAVAGIENTMHLAFTQDVMEIMTQLRKEWGLVYPEEM"
     gene            6795..7685
                     /locus_tag="U1396_001121"
     CDS             6795..7685
                     /locus_tag="U1396_001121"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000146880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HEM5342316.1"
                     /translation="MNTVVLKASAQQKQAMMAHYDRYRQTSKNPYIEAFFKLTGASLS
                     IYTSGKVVFQGEMAEQEAGLWGYEPESSGQTTIPGQNLPMIGTDEVGNGSYFGGLAVV
                     ASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIPHQALLLSPKKYNEVIEQG
                     YNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKYLKKEANQFANPVTLEE
                     KAEGKYLAVAVSSIIARAMFLENLVQLGQLVGMNLPSGAGSKSDQVAASILKQYGMAG
                     LNQTAKLHFANTQKAQKLLK"
     gene            7695..8324
                     /gene="lepB"
                     /locus_tag="U1396_001122"
     CDS             7695..8324
                     /gene="lepB"
                     /locus_tag="U1396_001122"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5342317.1"
                     /translation="MGAIQKTKRSPLVAFLAEWGIFLLFMAAFFASRYFIWNPVSVDG
                     HSMDPTLQHQEKLIMLKTTSIDRFDIVVASETDSDGKEKLIVKRVIGMPGDTIRYEND
                     VLYVNDQKVDEPYLDEYLAAFQKDKLQEVYSYNKQFQAVAQSAEAFTQDANGYVDFTV
                     TVPEGQYYLMGDDRLVSLDSRSVGTFSRENIKGEVVFRMWPLNRIGTVD"
     gene            8388..10877
                     /locus_tag="U1396_001123"
     CDS             8388..10877
                     /locus_tag="U1396_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HEM5342318.1"
                     /translation="MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVT
                     GTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERSKPTSAGLVKYFSSEHFKGIGRK
                     TAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
                     GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRF
                     RAGMLFSLIHRSMETGDTYVEARDLLEATLELLEKSRHTELDPAAVAKELTGLIADDK
                     VQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAAIAELESISSLTYDN
                     IQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAP
                     TGRAARRMNELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQ
                     LFQNISSQTQVLIVGDAEQLPSVSPGQVLADLLKIDKLPSITLERIYRQSDDSTIVTL
                     ASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQILAPMY
                     RGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGY
                     ITDLLPAKYTDSKQDEITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILP
                     ITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAVKNAGTVRKTYLVPRFQGEMA
                     EQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPKKTSPQ
                     PTEYILTVDNLLTIDPMIGIEQADIEEFFKA"
     gene            complement(10916..11857)
                     /locus_tag="U1396_001124"
     CDS             complement(10916..11857)
                     /locus_tag="U1396_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEM5342319.1"
                     /translation="MFSLSITISVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSG
                     QTIKTLQGVNTIVFDKTGTITEGKPQVTDIHLLSTKNREQVLQLAASSEQYSEHPLAQ
                     ALLRSAEEESIPLLASQDFQALSGRGLSVTIAEQTIYLGNERLMREQGIDVSKGRAVA
                     ETFAHQAKTPVFLASQQEVLAVIAIADKVKETSRQAVQALQTMELEVVMLTGDNEKTA
                     QAIAKEVGIEQVVSQVLPDDKANQVKFLQEQGKTVAMVGDYDHAFGKSYGVLMREWNL
                     LARAVFVLNADNEIVYVEYLDNVNEHPDYKAALEAVK"
     gene            complement(11914..12661)
                     /locus_tag="U1396_001125"
                     /pseudo
     CDS             complement(11914..12661)
                     /locus_tag="U1396_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636211.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
     gene            complement(12810..12989)
                     /locus_tag="U1396_001126"
     CDS             complement(12810..12989)
                     /locus_tag="U1396_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5342320.1"
                     /translation="MKQASYPIQGVTCASCAMTVEKALNKLDGIQNASVNLATEKTNI
                     QYDPAHLSLSDIDSC"
BASE COUNT         3657 a         3137 c         2755 g         3537 t
ORIGIN      
        1 aacgcttgca ttattttttg aaatcggata caatgataac acaaaagaaa tttgtccgta
       61 caaatttcaa aaaagacata cttttgggag atgtctaaaa aatatagggt gacggattcc
      121 ataagccgtc tagaaggaaa aatatatggg aaaatttgaa aaagaagcca aacagctcct
      181 agaagctatt ggcggaaaag agaatgtcaa tgcagtaaca cactgtgcaa cacgcatgcg
      241 ctttgttctt gcagatgaga aaaaagcaaa cgtaaaagtc attgaagaca ttccagcagt
      301 aaaaggaaca tttacaaacg caggtcaatt ccaagtcatc atcggtaacg atataccaat
      361 cttctacaat gactttacag ctgtgtctgg tatcgaaggc gtatcaaaag aagctgcaaa
      421 gtcagccgct aaaagtaacc aaaatgccat ccaacgtgtc atgaccatgc tggcggaaat
      481 cttcacaccg atcattcctg cccttatcgt cggcggtttg attctcggtt tccgtaacgt
      541 cttggaaggt gttcagatgg aatggcttgg acaagctatg aaagatgggc agttggtctt
      601 cgatgctgat ggtaaccctg tatggaacac catcgttcag gtttctcctt tctggaatgg
      661 tgtcaatcac ttcctctggt tgccaggtga agccatcttc cacttcttgc cagtaggtat
      721 cacttggtcc gtatctcgta aaatgggaac ttcacaaatc cttggtatcg tccttggtat
      781 ctgtttggtt tctccacagt tgctcaacgc ttatgctgta cctggtacag atgcagcaac
      841 cattgccagc gactggtctt ggaacttcgg tgcatttagt attgcccgta tcggttatca
      901 agcacaagtt atccctgccc tccttgctgg tttggcactg tcttacctag aaatcttctg
      961 gcgtaaggtt gttccagaag tggtctcaat gattttcgta ccattcctat cacttcttcc
     1021 agcaattatc ttggctcaca ctgtccttgg tcctatcggt tggacaatcg ggcaatggtt
     1081 gtcaacagtt gtattagctg gtttgactgg tccattgaaa tggctcttcg gtgcgatatt
     1141 cggtgccctc tatgcaccat tcgttatcac tggtcttcac cacatgacaa atgccatcga
     1201 tacacaattg attgcggatg ctggtggaac tggtctctgg ccaatgattg ccctttctaa
     1261 cattgctcaa ggttcagcag tatttgccta cttcctcatg aaccgtcaca atgaaaaaga
     1321 agcgcaagtt tctcttcctg caactatttc tgcttatctt ggtgttactg aaccagccct
     1381 ctttggtgtc aacgtgaaat acgtttaccc attcgtagct gctatgattg gttcaagtat
     1441 cgcaggctta ctctctgtaa ccttcaacat ccaagcagct tctatcggta tcggtggtct
     1501 tccaggtatc ttgtctatca aagctgaata ctggggtgca ttctttatga caatgattgt
     1561 tgcgattgtt gtcccaatga ttttgacagc tgttttcaaa cgtacaggtg cattttcaaa
     1621 aaaagaagaa actgttgaag aagttgtagc tccaactgaa gcagttgttg aaactggcgc
     1681 tgctatcgaa ttgattagcc cacttactgg tcaaaccaaa gaattgtcac aagctactga
     1741 ccctgtattt gcatcaggtg tcatgggcca aggtgtcctt attgacccaa cggaaggtct
     1801 tctggtagca cctgttgacg gagaaatttc tgtcctcttt ccaactaacc atgctgttgg
     1861 tatcactgct acaaacggag ttgagttcct tatgcacatt ggtatggata ctgttggatt
     1921 ggaaggtaaa ggctttacag cccatgtcaa acaaggtgac aaggttaaag caggtgacaa
     1981 attgattagc tttgacatcg atgtcatcaa ggctgctggt ctcgtcgcgg aaacaccagt
     2041 tatcgtgacc aaccaaactg actttgacac tcaagttatc ggaaatcttc ctcgtgccat
     2101 ctcgcaaggc gaagctattc tgacagttac aaagaattaa tgttctagga gggcgcaagg
     2161 taacttgcac ctcctatcat tgcttatgca agaaggaaaa atcaagaaag agagagcaaa
     2221 atgacaatag acaaacgaaa ggttgtttat caaatctacc caaaatctta caaggataca
     2281 actggaaatg gtgtagggga tctgcgtggg attattgaaa aacttccata tctaaaagag
     2341 ctaggcattg atatgatttg gctcaaccct ttctacccaa gtcctcaacg ggacaacggc
     2401 tatgacattt ctgactatac agctgtcaat cctgactttg gcaccatggc tgactttgaa
     2461 gacatggtgg ctgtcggcaa agagctaggt atcgaattca tgctagacat ggtcctcaac
     2521 cactgctcga cagaccacga gtggttccaa aaggccctag ctggcgacaa atactaccag
     2581 gatttcttta tcctgcgtga ccagccaact gactgggttt ccaagttcgg cggcaatgcc
     2641 tggggaccct ttggcgacac cgggaaatat tacctccacc tctttgatgt gacccaagcc
     2701 gacctcaatt ggcgaaatcc gcatgtccgc gaagaactct tcaaggtggt caacttctgg
     2761 aaagacaagg gtgtcaaggg cttccgcttc gatgttatca accttatcgg caaggatgaa
     2821 gtcctagaag attgcccaat caacgatggc aaaccagcct acaccgaccg tccgattacc
     2881 cacgactacc tcaagatgat gaacaatgct acttttggta gcgaaaaagg cttcatgacc
     2941 gttggggaaa tgtctgccac caccattgaa aactgcattc tctacacagc tcctgagcgg
     3001 gaagaattgt ccatggcctt caacttccat cacttgaaag tggactacaa ggacggtcaa
     3061 aaatggacca ttatggactt tgactttgag gaactcaaac gcctcttcca cacttggggc
     3121 gaggagatgt cagctggtaa tggctggaat gccttgttct acaacaacca cgaccaacct
     3181 cgtgccctca atcgctttgt tgatgtagag aatttccgaa acgaaggagc aaccatgctg
     3241 gccgcttcta tccacctgtc acgcggaacc ccttacatct acatgggcga ggaaatcggc
     3301 atgattgacc ccgactacga tagcatggac gactatgtcg atgtggagtc tatcaatgcc
     3361 taccagatgc tcttggacca aggtcacacg cctgagcagg ccttcaagat tatccaggcc
     3421 aagtcccgtg acaattcccg caccccgatg caatgggact cttctgacaa tgcaggcttc
     3481 tcaacaggcg ccccttggct aaaggctggc aaatcctatc caaccattaa cgttgaacag
     3541 gaaaaaacag gcccaatctt caccttttac caagaactca tccgtctgcg taaagaactg
     3601 ccactcatct cagaaggaga ttacaaggcg gcctataacg acagccagaa agtctatgcc
     3661 tttgagcgtt tactaaacgg tgaaaaatta ctggtcctca acaatttctt tgcagaagag
     3721 gttgaactag atctggcaga cgactatgcc cacggccaag tcctcatcag caactatcct
     3781 gacaacaaac taggcaaaaa aatcattctc aaaccttacc aagcattggc aattcaagtt
     3841 aaataaacga taaaacatcc gaaaataaca ctctacatgt caattttaat tttcctaaaa
     3901 ttagaccctg ccttcacagc tcagtaggtt acttgtgaag gcaagttctt ggtttaaggt
     3961 ttcttttagg aatatatttt atactgtaat ttgcgcacga aacagctatc tggggggaga
     4021 tagttgtttc tttttttata gtcatttgaa ttaactttgg tacatcgcca ctttcggctt
     4081 gccatactct acgaaagtga cttgtttcgc aagtcttatt ttcaacctag aacagcctct
     4141 aggctgttct agctacctgc acctcagttc cttgtctgaa agttcattca ttcgactata
     4201 ttactacata taaagcaata accgtttcag ataaggctga aacggttatt tttgtaagtc
     4261 taattaaaag atacatgcac atgatcgtag tggttttctg taacgctacc acggtctggc
     4321 atcagattcc atgtataggc tggaccatag atactgtcat acggcgcata gaagcgctgt
     4381 ttccaaatga tgtagttgat atttttagaa gctaagttta caactgcata agccgccact
     4441 tgatccccaa gtgctgaact ttgtggtacc atgaagtcaa ttgccaatcc cttaccatgg
     4501 tcgccagaat caccaggacg gtaacctgag aaagaagtaa taccgaaggc attagctact
     4561 tctgcgcgga aggctgctac ctgaggttgc aaaccgacat cataagcact tgtacttgtt
     4621 gtagtggttg atagggctgt cacttgtgga gtttcaacta caggctgttc tacaggtgct
     4681 tctacgacag gttgttctgc aacttcctct acaggtgcct caaccacagg ttgctctaca
     4741 acttcctcta caggcgcttc tactacaggt tgctctacaa cttcctctac agacgcttct
     4801 gctacaggct gttctacaac ttcctctaca gacgcttctg ctacaggttg ctccacaact
     4861 tcctctacag gtgctgagtc ggtaactgat gaaatttgat ccaacggaac aaccgtatcc
     4921 tcaaccgtta cttgattggt tgttaggtca acagttgcct gaacggtctc atttgtgttt
     4981 ccctgaacag gagcttcaat ctcaacctga gtcacttgat tggttgttag gtcaacagtc
     5041 gtcgtcagta ccgtatcagg gaaaatcaag ttgacatctg caatttgatt tattttcgcc
     5101 agcaagtcca tatcaatatt catagctgag gcgatggcag ataaggtatc tccatactga
     5161 acagtatagg tcatctttcc ttcttcttgt acaatttctg ggctaatttc agaaacagta
     5221 cgtggagccc attcgatggc taaaacattt gtcgaaatca tccctgtact aaagagggaa
     5281 agagccaatg aagatgtgta taacatcttc ttattgtttt tcatgatggg tgtttttctc
     5341 ttgcgacgca tatgttgtgg tttatttgtt ctcttacgtt tcataatctt attccttctt
     5401 tatttttgag atggttctat cttacctaaa ttaaatctga aaaacaagcc ttcaaccttt
     5461 cttttaaata aactgtctcc actatgtaat cttaggactt ttctgtcaca caatcaatat
     5521 aaatgtcatc tgactgtcat attattagat aatactcaat gaaaatcaaa aacagactcg
     5581 gagatgcaga tagaactaac gttcaccaaa tcaagtcaac aacgtctgga ttttcgaaga
     5641 ctataattaa aaaataagag taaggcagta atccaacaat tggctactag ctcactctca
     5701 tttctatttt cggattagtc aagatcctac atttcttcag gataaaccaa gccccattct
     5761 ttacggagtt gggtcataat ctccataaca tcttgggtaa atgctaggtg catggtgttt
     5821 tcgatgcctg cgacagcttt ttccatatcc gccacttcat aagaaagggc cctggctgtc
     5881 tcgcccgctt cgattacctc ttggctaccg tcttcagtat aggtaatgac tgctttctga
     5941 ccacgtgggt actcgtaaag ctcgatgtag cctttatcgt aggcaatagt gccccgtttt
     6001 ggctgtttgg catggagggt cagggcggtg gtcgccattt ctcctgcatc attgctgagc
     6061 aaaatcccta cctgctcgtc cacacctgtc ggagccaatt tgacctgaga taggacttga
     6121 tttggctttt ccgtcataaa ccaacggaca aaggacagag cgtagacacc aatatccaag
     6181 agggcaccgc cggccaagtt cttattgaaa aagcggttgg tcatgtcgta ttccttgtag
     6241 ctgccaaagt tcatctgaat catcttcaaa tctcccagct tgccacttgc aatgacctca
     6301 ctcaactgac gatagattgg catgtggaaa atggtcatgg cctccgccaa gacgacctga
     6361 ttttcctcag ctaattgaat agcttctgcc aattcttctg aattaagcgt aatagacttt
     6421 tcacagagga catgctttcc agccttcaaa gcttttctca aataattgat atgggtattg
     6481 tgaggcgtag aaatatagat aatgtctact tcaggatcct caaacacttc atcgatttct
     6541 cgataaactt tctcgatgcc atatttttgc gcaaattcca cacccttgtc ataggtacgg
     6601 ttggctaccg aataaagatt tcctcccata tcctgcaagg cctgaaccaa ttcgttggca
     6661 atgacacctg ttcccagagt cgcccattta tacttcattt gcacttccat agtgtacctc
     6721 actttcttct accattatag taaattccac ccttttctgc acactctaac tagcatttgt
     6781 gttacaataa gaacatgaat accgttgtac taaaggcctc tgcccagcaa aaacaagcca
     6841 tgatggctca ctatgaccgc tatcggcaga ccagcaaaaa tccttacata gaagcatttt
     6901 tcaaactgac cggtgccagc ctgtccatct acacttctgg aaaagtcgtt tttcaggggg
     6961 aaatggcaga gcaggaagca gggctctggg gctatgagcc agaaagctct ggacagacga
     7021 ccatacctgg tcaaaacctg cccatgattg gtaccgatga ggttggaaac gggtcttatt
     7081 ttggaggttt ggcagtcgtt gctagttttg tccgcccaga agaccatgcc tttctcaagt
     7141 cgcttggtgt ggatgattct aagaaaatga cagaccaaaa aatctgccaa atcgctcctc
     7201 tcttaaaaga gaaaatcccc caccaagctc tgctattgtc accgaaaaaa tacaacgaag
     7261 tcatcgagca aggctacaat gcggtgtctg tcaaggtggc cctacacaat caggctattt
     7321 tcctactctt gcaaaagggt gtccagcctg agaagattgt cattgatgcc ttcacttcca
     7381 gtcaaaatta tcaaaagtac ttgaagaagg aagccaacca atttgccaac cccgtcactc
     7441 tagaagaaaa ggctgagggc aagtatctgg ctgtggcagt atcttctatc attgctagag
     7501 ctatgttttt agaaaatctt gtccagcttg gtcaactagt tgggatgaat ctgccgtctg
     7561 gtgcgggcag taaatccgac caagtcgcag caagcatctt aaaacaatat ggtatggctg
     7621 gtctcaacca aactgccaaa ctccactttg ccaatacgca aaaagcacaa aaattattga
     7681 aatgaggaaa aaatatggga gcaatccaaa aaacaaaacg ctcaccacta gtcgccttct
     7741 tagctgaatg gggcatcttt ttactgttta tggcagcttt ttttgccagt cgatacttta
     7801 tctggaatcc tgtctctgtc gatggccatt ccatggaccc aacgcttcaa caccaagaaa
     7861 aactcatcat gctaaaaacg acctctatcg accgctttga tattgttgta gccagtgaga
     7921 cagacagcga cggcaaggaa aaactgattg tcaaacgtgt gattggtatg ccaggtgaca
     7981 ccattcgcta cgaaaacgat gtcctctatg ttaacgacca aaaagtggac gagccttact
     8041 tagatgaata tctagctgca ttccagaaag ataaacttca agaagtctat tcttacaaca
     8101 aacaattcca agctgtggcc caatctgctg aagctttcac acaagatgcc aatggttacg
     8161 tagactttac cgtgacagta ccagaaggac aatactacct gatgggagat gaccgccttg
     8221 tctcactaga tagtcgtagt gtaggaacat tttcccgtga aaacatcaaa ggagaagttg
     8281 tctttcgcat gtggcctctc aaccgtattg ggactgttga ttaatacaaa caagtttgga
     8341 gcaatccgtt ccaaacttct ttttcattat tattggaact aaactctatg aacgaagtgt
     8401 attttaccgg cactattgac cggattattt ttgaaaatcc tagtaatttt tataaaatcc
     8461 ttctccttga aatcgaggag acagacgcag actatgatga ctacgaaatt attgtgaccg
     8521 gaacgattgc cgatgtcatt gaaggagaag actatcgttt ctatggcaat ctggtcaccc
     8581 atcccaagta tggtcagcag ctgcaaattt cgcgttacga acgcagcaag cctacctcag
     8641 ctggtctggt caagtatttc tccagcgagc atttcaaggg aattggacgc aaaacagctg
     8701 aaaaaatcgt tgagctctat ggcgaagata ccattgataa gattttagct gaacctgaaa
     8761 aactaaccca aatcacaggc ctatccagca agaacatgca ggcatttgtc gaaaaactcc
     8821 gcctcaatta tggaaccgag ttgatcttgg caaaactagc cgagtatggc attcccaata
     8881 aattggcctt tcaaatccaa gaccagtata aggaaaaaac acttcagatt attgaagaaa
     8941 atccctatca actggtcgaa gatgtccagg ggctcggctt taccattgcc gataggattg
     9001 cggaaaatct aggaattgcc agtgattcac cccaacgttt tcgggctggc atgctcttta
     9061 gtctcattca tcgctccatg gaaacaggcg atacctatgt ggaggccaga gacttgctgg
     9121 aagcaaccct tgaactgctg gaaaaatccc gccatacaga gctggacccc gctgctgttg
     9181 ccaaagaatt gacgggactg attgcagacg acaaggtaca gcaagaaggc acaaagattt
     9241 ttgacaacag cctctacttt gccgaacatg gtatccatac aaacctaact cgcctgatgg
     9301 gaaaaaacgg cttcaagccc ttcccacgcg cagacgtcga ggctgccata gcagagctgg
     9361 aaagcatatc ttctctcacc tacgataaca ttcaaaaaga agccattgtc caagccatta
     9421 ccaatccgct tttcattctg acaggcgggc cagggactgg aaagacaacc gttatcaacg
     9481 gtattatcgc ggtctatgcc atcttgcata agattgacct gactcgcaac cgagaagaat
     9541 gcccagtcct cctagccgct ccaactggac gagcagccag acggatgaat gaattgacag
     9601 ggctgccttc cgccaccatc caccgccatc tcggtctggt agaaggacag gaggaatcct
     9661 accgtgatga ttatttggat gccgacttta tcatcgtgga tgagttttct atggtagata
     9721 cttggttggc aaaccagctc ttccagaata tctcctccca gacccaagtt ctgattgtcg
     9781 gcgatgccga gcaattgcct tctgtcagcc ccggtcaagt acttgctgac ctcttgaaaa
     9841 ttgacaagct gcccagcatt actctagaac gtatctatcg tcaatccgat gattcgacca
     9901 ttgttaccct agccagccag attcgacagg gtgctctgcc tagcgatttt cgtgagaaaa
     9961 aggctgaccg ttcctatttt gaagcccaga atgaacaaat tccagccctg attgagcgca
    10021 ttgtcggcgc agccatcaag tcaggtattc ctgcaaacga ggtacagatc ctcgctccca
    10081 tgtaccgtgg ggccgcaggc atcgaccaac tcaacactat gacccaggcc ctgctcaatc
    10141 cactggaaga gggagagtta gaattcctgc ataacgagca agccttccgc caaggcgacc
    10201 gggtcattca tttagtcaac gatgccgagg ccaatgtctt caatggtgat ttaggctaca
    10261 tcaccgacct ccttcctgcc aagtacaccg actccaagca ggacgaaatt accatcaact
    10321 tcgacggtag cgaggtcacc tatccccgaa acgaatggta caagattacc ctggcctatg
    10381 ccatgtccat ccacaagtcc caaggcagcg agtttcaggt agtcatcctc cccatcaccc
    10441 gcaccagcca ccgtatgctc cagcgcaatc tggtctacac cgccatcacc cgctccaaga
    10501 gcaagctcat cctcctaggc gaaatctccg ccttcgacta cgccgtcaaa aacgccggca
    10561 ccgtccgaaa aacctatctg gtcccacgtt tccaagggga aatggcagag caggaaagca
    10621 aggaaagcct gattaaaaaa gacgaaagca aaacagctac aaccacgcaa acccagcccc
    10681 ctactcagcc agacagaaaa gaacaggtta aagtagtcaa agaaaacaac caacaactct
    10741 cccttcttga tcaagaccag ccaaaaaaaa caagtcccca acccacagaa tacattttga
    10801 ctgtagacaa cctactaacc atcgacccca tgattggcat agaacaggca gatattgaag
    10861 aattttttaa agcataaaaa ccagcaagtc agtagatgaa caccgttata ttcttttatt
    10921 tgacagcctc taaagctgct ttataatctg ggtgttcgtt gacattgtct aggtattcta
    10981 cgtagacgat ctcattgtcg gcattaagga caaagaccgc acgcgccagc aaattccact
    11041 cccgcatgag cacaccgtag gattttccaa aggcatggtc atagtcccct accatggcga
    11101 ctgtcttgcc ctgttcttgt aagaacttga cttggttggc cttgtcatct ggcaggacct
    11161 gactgaccac ctgctcaatg ccgacttcct tggcaatagc ctgggcagtt ttttcattat
    11221 ctcctgtcag catgacaacc tctagttcca tggtttgcag agcctggaca gcctgacggc
    11281 tggtctcttt tactttatca gcaatggcaa tgactgctag tacttcttgc tggctggcta
    11341 ggaaaacagg cgtcttagct tgatgggcaa atgtttccgc aactgcacgt cctttggaaa
    11401 catcaattcc ctgttcccgc atcaaccgtt catttcccag atagatggtc tgctctgcta
    11461 ttgttaccga aagaccacga ccagaaagtg cctgaaaatc ttggctggca agtaagggaa
    11521 ttgattcctc ttctgctgaa cgtaagaggg cttgagccaa tggatgctcg gagtattgtt
    11581 cactgcttgc tgccagttgg agaacttgct cacgattttt agtagacaaa aggtggatgt
    11641 ctgtcacttg tggcttgccc tcagtaatgg tcccagtctt gtcgaagaca atggtgttca
    11701 caccttgtag ggttttaata gtttgaccag acttgaacaa aagaccattt tctgcccctt
    11761 ttccagtccc aaccatgata gcggttggtg tggcaaggcc caaggcacac gggcaggcaa
    11821 tgacaaggac ggagatggta atggaaagtg agaacatcta gggctcttgt cccaagaagt
    11881 accaagcaag gccagaaagg acggctaatc ccattacaat tggaacaaag actgctgaaa
    11941 cgcggtcagc caactgcgca atcggagctt ttgacccctg tgcttcttcc accaaacgaa
    12001 taatttggga caatgtggta tctgctccaa cttttgtcgc ttccatttgg aaagcaccat
    12061 gttgattgag agtcgcacca acgactgtat ccccgatgtt tttttaacag gcaaactttc
    12121 ccctgtcagc atggattcat caattgtcga ttggccttct actattatcc catcaactgg
    12181 aatctgttca ccagggcgga cttgaaggac atctcctact ttgacttggt ctaaggggag
    12241 ggtcacttct tgaccttcac agagaacgcg tgcagtttta ggggcgagat tcatcagttt
    12301 actgatagct tctgaagtac gctcttttga taatgcctcc atgtattttc caagagtgat
    12361 aagggttaaa ataacagctg ccgattcaaa atagagctca ggatgtccat gttgggtggc
    12421 tacttggttg gtagcaatca aaatcgtcag tcataatgat cccttgaaac aaggcagcac
    12481 ttgtcccaac ggcaatcaaa ctatccatat tgggatgacc ggcaaacagg gttttaaacc
    12541 ctttttgata aaatgcacga ccaacatata ggactggtaa tacaagaatg agctgaacta
    12601 gggcaaaaac tagcggctgg tgtaagatag ctggcaatgg caatccccca cctggtaaca
    12661 taggtcccat tgcaatgtag agtagtggaa gcgtgaaaat ggttgaccag ataaatctgt
    12721 gccataaatc atttttgtgt tgttcttttc cgcttggttg agcttctgac tcttgtgttt
    12781 ttggcagtac cgctttataa cctgcttttt caacagctgt cgatatctga taagctcaga
    12841 tgggctggat catactgaat gtttgttttt tccgttgcta gattcacact ggcgttttgt
    12901 attccatcta gcttattcaa ggctttctcg actgtcatag cacaggaagc gcaggtcacg
    12961 ccttgaatgg gatagcttgc ttgtttcata gattactcct tttctgacta catttgtaaa
    13021 cgaattatac aacatccgac tacatttgta aacaattttg attaaaaaaa tgagagaatc
    13081 ttctct
//
LOCUS       DASGBY010000054        13072 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.054, whole genome shotgun sequence.
ACCESSION   DASGBY010000054 DASGBY010000000
VERSION     DASGBY010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13072
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.054"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(235..483)
                     /locus_tag="U1396_001127"
     CDS             complement(235..483)
                     /locus_tag="U1396_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3165 family protein"
                     /protein_id="HEM5342321.1"
                     /translation="MFYLILAIMLVLFYIFIAPRNIKGTMNLIAAVFLLVALAIALVL
                     GFLRIMQFPKEIWVGLLMILIGFWAMRDIYQLNDDTKF"
     gene            complement(501..2348)
                     /gene="typA"
                     /locus_tag="U1396_001128"
     CDS             complement(501..2348)
                     /gene="typA"
                     /locus_tag="U1396_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEM5342322.1"
                     /translation="MTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDERTQLDER
                     AMDSNDIEKERGITILAKNTAVAYNGTRINIMDTPGHADFGGEVERIMKMVDGVVLVV
                     DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPEEVVDEVLELFIELGADDDQ
                     LEFPVVYASAINGTSSLSDNPADQEETMAPIFDTIIEHIPAPVDNSDEPLQFQVSLLD
                     YNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFGFFGLERKEIQEAKAG
                     DLIAVSGMEDIFVGETVTPTDAVEPLPVLRIDEPTLQMTFLVNNSPFAGREGKWVTSR
                     KIEERLLAELQTDVSLRVDPTDSPDKWTVSGRGELHLSILIETMRREGYELQVSRPEV
                     IIKEIDGVKMEPFERVQIDTPEEYQGSVIQSLSERKGDMLDMVATGNGQTRLVFLVPA
                     RGLIGYSTEFLSMTRGYGIMNHTFDQYLPVVQGEIGGRHRGALVSIDQGKATTYSIMR
                     IEERGTIFVNPGTEVYEGMIIGENSRENDLTVNITTAKQMTNVRSATKDQTSVIKTPR
                     ILTLEESLEFLNDDEYMEVTPESIRLRKQILNKAERDKAAKKKKLATEE"
     gene            complement(2481..3473)
                     /locus_tag="U1396_001129"
     CDS             complement(2481..3473)
                     /locus_tag="U1396_001129"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HEM5342323.1"
                     /translation="MKKSFIHQQEEISFVKNTFTQYLKDKLEIVEVQGPILSCVGDGM
                     QDNLSGVENAVTVNVKLIPDATYEVVHSLAKWKRHTLARFGFNEGEGLFVHMKALRPD
                     EDSLDPIHSVYVDQWDWEKVIPDGRRNLAYLKETVEQIYKAIRLTELAVEARYDIESV
                     LPKKITFIHTEDLVKNFPDLTPKERENVVAKEYGAVFLIGIGGELADGKPHDGRAPDY
                     DDWTSPSEAGYKGLNGDILVWNEALGSAFELSSMGIRVDEEALKRQVAITGDEDRLEF
                     DWHRALLNGLFPLSIGGGIGQSRLAMFLLRKKHIGEVQSSVWPQEVRDNFENIL"
     gene            complement(3558..4607)
                     /locus_tag="U1396_001130"
     CDS             complement(3558..4607)
                     /locus_tag="U1396_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM5342324.1"
                     /translation="MSRQIAHLPSLIPFGFILADNRYTYREVFMEGQFEAVVEVDEAG
                     QLSSYVWDCEMEEVYTAHLVTAPAGAFVGQVRESYQSILARVEEACCIALPFTKDQSN
                     RIAQLIKEQWGDLPDYPFAKLPTYGAFRHPNNNKWYALVSQIPRDKLDGSGSKEEVEI
                     VNLKVDGREIAELLSQSGIFPAYHMSKKTWVSVLLDDTVEDQMVFALLEKSRYLVGPK
                     SYKAEQGPDYWVIPANPKVYDIDTEFAENMVVYWPQKSTIQAGDIVAIYVTAPVKAIR
                     YVCRVLGANLENHGESDIPTEKKLMQVELLAQFSDDVLPRARMMDLGVKAVRGPRRLT
                     EGVIEVLTSEVKNLH"
     gene            4682..5074
                     /locus_tag="U1396_001131"
     CDS             4682..5074
                     /locus_tag="U1396_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(deoxy)nucleoside triphosphate
                     pyrophosphohydrolase"
                     /protein_id="HEM5342325.1"
                     /translation="MSKKIISVVAAAIEKDGKIFCAQRPEGKSLGGYWEFPGGKLEAN
                     ETPEEALVREIKEEFDSEIEIVSFINEASYEYDFGIVTMKTYLSKLVTGDLTLLEHQD
                     SKWLPIEDLETLEWAPVDIPAVKCLQQK"
     gene            complement(5098..7971)
                     /locus_tag="U1396_001132"
     CDS             complement(5098..7971)
                     /locus_tag="U1396_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5342326.1"
                     /translation="MSNNNLFQDQLLHSLQYGFIDREIFQEGVYSPKILINDTETHRY
                     VLNDIQEELSKAQSFAFSVAFITQSGLALIKSQLSDLADEGIQGRILISPYLDFNDPI
                     AMKELLKLKNVQVRITPVNLQMHAKFYLFEQKDKQVIISGSSNLTHTALKINYEWNVK
                     LTSTHNGDFIQNAKEEFDRIWEKSIVLDLEAINAYSARRQTVIKTAMIRDESIASYQE
                     TIRPNKMQEQALEGLATVRKNGAQKALVISATGTGKTYLSAFDVKQYNPDRMLFIVHR
                     EQILQKSLKDFQKVLGFEDDEGCIYKSGMDISQKRYIFATIQTISRADNLQAFDPTFF
                     NYILIDEVHKAGADSYKKVMNYFQPDFYLGMTATPERTDGQNIYELFDYNIAYEIRLQ
                     EALDNDMLCPFIYYGVSDIKIDGQLIDEKATFSNLVSEQRVNHILEKIAYYGVSGEAV
                     KGLIFCSSVNEAKELEGQFNARGLRTSALSGEHSQKERQRVVQDLENGNLDYILTVDI
                     FNEGIDIPSVNQVVMLRNTQSSIIFIQQLGRGLRKHDSKEYVTIIDFIGNYQNNYLIP
                     VALFGDQSMNKDNYRREVREPNILKGLTTINFEKVAKEQIFSSITNTTLSSIKILRDA
                     FKDLENKLGRVPYLSDFIKLNSIDPLVFFENSSFQNYGDVINKFSEETILLSEVEKRF
                     LNFITFEILNGKRKHELYLLKLLVENEGLVSSDKWFECIIEHDLDFQTDVLDSVTRVL
                     DLSFLKAQEQKKYGTDALVTFDGELYRLNEEIQESLVNNTKFTQLFLDVIETGILKSK
                     DYPEIFTLGQKYTRREVLKLMNVAKDEPPLNIGGYKIDKDTNSCPIFITYHKSEDISD
                     TIKYDDELLNESTLKWFSKNKRTLDSNDVSTITQSNENGLRLELFVIKDDSEGGEFYY
                     LGPLSYVENSASEVMKNGDSVVQMLFKLDSPVETNLYKYLTDK"
     gene            complement(8056..9318)
                     /locus_tag="U1396_001133"
     CDS             complement(8056..9318)
                     /locus_tag="U1396_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342327.1"
                     /translation="MDNNLVSLNYLIDQLNNLEDFSMSLNGEVPSEISELKSSVFNFS
                     QESALFMENFSQQGWCLYESMDFDIVQRVNSEYEKNGIDKAERILIDYFKNEVRKKVH
                     WIKKSSKVLLDRSHLIDVFFEEHFKGNYICSVPLGLIIVDGAVNDFTKNKDNKCLFAE
                     GLELNVWDSFVGSNKSLKEIVSIFTSSRRKTNKDEIRLPYRNGILHGRDINFGNEYVS
                     CKCVSLLFAVADWIKQKTNEVERKDSFVKSQTNESIVDLINRYQELKKFEDEIANWKR
                     RDIILGTDIPVSGVRDDYGEYSYLYPILDMFEYWRDGNYGQLSKLLEDAKNMNTSNGK
                     WAGQIREIFNEKKYNSFEFITIDEKTYAKSEITVKVEWEQDSSIRTESLRFNCVYTGL
                     KEEDNLVAPWRENGEWRLIPLDVEKIFY"
     gene            complement(9405..12056)
                     /locus_tag="U1396_001134"
     CDS             complement(9405..12056)
                     /locus_tag="U1396_001134"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014623308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEM5342328.1"
                     /translation="MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDAEAKPYSIVIP
                     PPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQG
                     VTRYDLGREKFLDKVWEWKDEYAATIREQWGKLGLSLDYQRDRFTLDEGLSKAVRKVF
                     VELYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVAT
                     TRPETMFGDVAVAVNPEDPRYKDLIGKNVILPIVNKPIPIVADEHADPEFGTGVVKIT
                     PAHDPNDFLVGQRHNLPQVNVMNDDGTMNELAGEFAGMDRFEARKATVAKLQELGALV
                     EIENRVHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTADKVEFYPPRFNDT
                     FLQWMENVHDWVISRQLWWGHQIPAWYNESGEMYVGEEAPAGDGWVQDEDVLDTWFSS
                     ALWPFSTMGWPDENAADFQRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGSQPFKNVL
                     IHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDA
                     SWNFINKIWNISRYILMNNEGLTLDAARENVAKVAAGEAGNVTDRWILHNLNETIAKV
                     TENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVMTRSVLLYTLDQI
                     LRLLHPIMPFVTEEIFAQYAEGSIVVAAYPVVNPAFENAEAHKGVESLKDLIRSVRNS
                     RAEVNVAPSKPITILIKTADSELETFFKANENYIRRFTNPEQLEISSSIAAPELAMSA
                     VITGAEIFLPLADLLNVEEELARLDKELAKWQKELDMVGKKLSNERFIANAKPEVVEK
                     EKEKQADYQAKYDATVGRIAEMKKLVK"
     gene            complement(12232..12663)
                     /locus_tag="U1396_001135"
     CDS             complement(12232..12663)
                     /locus_tag="U1396_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342329.1"
                     /translation="MKSLTQTFTKKQKLVVVIVVILSVAIGFWKWRDTFFNTYYPDDT
                     SIQGQLFPNVANTKIETVENVLPFSDVKYDKIIIRIGSLSSEYDDSNQSSKANNIINR
                     KTLDENFIQWLIEAFDEEEAKKISDHIEVYYRGEIISEISY"
     gene            complement(12660..>13072)
                     /locus_tag="U1396_001136"
     CDS             complement(12660..>13072)
                     /locus_tag="U1396_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342330.1"
                     /translation="QDIWIDSLNKDELEEEFGSYKVYYDGNLIIENGASYTSEGATKN
                     QIISMKETIVTELDTNKEFKKYTFKKYYIPDEGTDPTEIKIIEDGFAIETVFEQKDLI
                     PNIAFGPTLYTVRAEFIKENNKLVLRKGSMEVYK"
BASE COUNT         3723 a         2898 c         2389 g         4062 t
ORIGIN      
        1 ttaaatgact gtactaagaa cttgctattt ttgggatttc attgagtatt aaaatttatc
       61 tacataaaaa caccttgaaa atacgcttgt catttattat aaataacgag agcttcttca
      121 agatgtatca cagaatataa tttctttagc taatagattg ccactactgt ccaaaaagct
      181 ggataaaatt ccttagtaat atcgtattac ggtattcaaa aatcaaagac tctgctaaaa
      241 ttttgtatcg tcatttaatt gataaatatc ccgcatcgcc caaaaaccaa tcagaatcat
      301 tagtagacca acccaaattt cctttggaaa ttgcatgatt cttaaaaatc caagtaccaa
      361 ggcaatcgct aatgctacca gtaaaaatac tgccgcaatc aaattcatag tccccttaat
      421 attgcgaggt gcaataaaaa tataaaaaag tactaacatg atggcaagga ttaaataaaa
      481 catgcttctt ctcctagaaa ttattcctca gtcgctaatt ttttcttctt cgcagcctta
      541 tcacgctctg ccttgttcaa gatttgctta cgaagacgga tagattctgg cgttacttcc
      601 atgtattcat catcgttcaa gaattctagt gattcttcaa gagttaagat acgtggtgtc
      661 ttaattacag acgtttggtc tttggttgct gaacgaacgt tggtcatttg ttttgcagtt
      721 gtgatgttaa ctgtcaagtc attttcacgc gagttttcac cgataatcat tccttcgtac
      781 acttcagtac ctgggttgac aaagatggta ccacgctctt caatacgcat gatagagtat
      841 gtcgttgcct taccttggtc gatagagaca agggcaccac ggtgacgacc accgatctca
      901 ccttgaacaa caggcaagta ttggtcgaaa gtatggttca tgataccgta accacgagtc
      961 attgaaagga attctgttga ataaccaatc aaaccacgcg caggaacaag gaatacaaga
     1021 cgagtttgac catttcctgt cgcaaccata tccaacatat cacccttacg ctcagagagg
     1081 gattggataa cagaaccttg gtattcttct ggtgtatcga tttgcacgcg ctcaaatggc
     1141 tccatcttca cgccgtcgat ttccttgatg ataacttctg gacgtgatac ttgaagctca
     1201 tagccctcac gacgcatggt ttcaatcaag atagacaagt gcaattcacc acgacctgaa
     1261 acagtccatt tatctggaga gtcagtaggg tcaacacgga gagaaacgtc tgtttgcaac
     1321 tcggccaaaa ggcgctcttc gattttacgt gatgtcaccc atttaccttc acgacctgca
     1381 aacggtgagt tgttcaccaa gaaagtcatt tgaagagttg gctcatcgat acgaagaact
     1441 ggaagtggct caaccgcatc agttggtgtt acagtttcac caacgaagat gtcttccata
     1501 ccagaaacgg caatcaaatc accagctttt gcttcttgga tttctttacg ctcaagaccg
     1561 aagaaaccaa agagttttgt aacgcggaag tttttcgttg taccatctag tttagaaagg
     1621 gtaacctggt caccaacttt aacagtacca cggaagacac gaccgatacc gatacgacct
     1681 acgaagtcgt tgtagtccaa aagggatact tggaactgca aaggctcatc tgagttatcg
     1741 actggtgcag ggatatgctc gatgatggta tcgaaaattg gtgccattgt ttcttcttgg
     1801 tccgctggat tgtcagacaa tgaagaagta ccgttgatag ctgatgcata aactactggg
     1861 aattccaatt ggtcatcgtc tgcaccgagt tcgatgaaga gttcaagcac ttcatccact
     1921 acttcctctg gacgagcaga aggcttatca atcttgttga caaccacgat tggtgtcaag
     1981 ttttgttcaa gtgctttttt caatacgaaa cgagtctgtg gcatagtccc ttcgtaggca
     2041 tctacgacaa gcacaacacc gtcaaccatt ttcatgatac gctcaacctc accaccgaag
     2101 tccgcgtgtc ccggtgtgtc catgatgttg atacgagtac cgttgtaagc tacggcagtg
     2161 tttttagcca ggatagtgat tccacgctct ttttcgatgt cgtttgagtc catggcacgc
     2221 tcatccaatt gcgtacgttc atcaagtgtt tgggattgtt tcaataattc atcaacgagg
     2281 gttgtttttc cgtggtcaac gtgggcaata atggcaacgt tacggatgtc ttctctaagt
     2341 tttgtcataa tatcctctat atattttaat ttaactaaaa aagtatatca tagattggcg
     2401 caaaaatcac agataatctt gttgtaaatg ttttcagata gcagattgaa agcagaagaa
     2461 aagagattga agccaatctc ttataaaatg ttctcaaaat tatcgcgcac ttcttgtggc
     2521 caaacactgg actggacttc accaatatgt ttcttacgaa gcaagaacat ggccaaacgg
     2581 gattgaccga taccgccacc gatagacagc gggaagagac cattcaaaag ggcacgatgc
     2641 caatcaaatt ccaaacggtc ctcgtcacct gtaatagcaa cctggcgctt cagcgcttcc
     2701 tcgtctacac gaatccccat tgaggataac tcaaaggctg aaccaagtgc ttcgttccaa
     2761 accaagatgt ccccattgag tcctttgtag cctgcttctg atgggcttgt ccagtcatca
     2821 tagtctggtg cacgtccgtc atgtggttta ccatctgcca gttcaccgcc gataccgatt
     2881 aggaagaccg caccgtattc tttggcaacc acattttcac gctctttggg tgtcaagtct
     2941 gggaagttct tgaccaaatc ctctgtgtgg ataaaggtga ttttctttgg taaaacagac
     3001 tcaatgtcat aacgagcctc cactgccaac tctgtcagac ggatagcctt gtaaatctgc
     3061 tccactgttt ctttcaagta agctaaattc cgacgaccat caggaataac cttctcccag
     3121 tcccattgat ccacgtatac tgagtgaatg ggatccaagg aatcctcgtc aggacgaaga
     3181 gccttcatgt gaacaaagag cccttctccc tcattaaaac cgaaacgagc caaggtatgg
     3241 cgcttccact tagcaagtga gtgaaccact tcataggtcg catctggaat taacttcaca
     3301 ttaacagtaa ccgcattctc cacaccggac aaattatcct gcataccatc cccgacacaa
     3361 ctcaaaatcg gtccttgcac ttctacgatt tctagcttgt ctttcaaata ctgagtgaat
     3421 gtatttttga cgaaagaaat ctcctcttgc tgatgaatga agcttttctt cataccttac
     3481 ctcctcgtaa atttatacac cttattatac tcttttttac ccacttgtaa agtcttttta
     3541 ttaaatattc tgataattta atggaggttt ttcacttcag atgtcagcac ttctatcacg
     3601 ccctctgtca agcgtctagg tccacgcacc gccttgactc ccaagtccat catgcgtgct
     3661 ctcggcaaca catcatcgga aaactgagca agcaattcca cctgcatgag tttcttttct
     3721 gtcggaatat ctgactcccc gtgattttct aaattcgccc ctaagacccg acagacatag
     3781 cgaatagcct ttaccggcgc cgtgacataa atggcaacga tgtccccagc ttgaatggtt
     3841 gatttttgtg gccaatagac taccatattt tccgcaaact cggtatcaat atcatagacc
     3901 tttggattgg ctggaatgac ccagtaatct ggtccctgct ctgccttgta ggattttggt
     3961 cctaccagat aacggctctt ctcaaggagg gcaaaaacca tctggtcctc caccgtatca
     4021 tccagcaaga ccgacaccca ggtcttctta gacatgtgat aggctgggaa gatgcccgac
     4081 tgactcagca gctctgctat ttcccgacca tcgaccttga gattgacaat ctccacctct
     4141 tctttagacc cgctcccatc cagcttgtcc ctcggaatct gactgaccag ggcgtaccac
     4201 ttgttattgt tgggatggcg aaaagcccca taggtcggca acttggcaaa gggatagtca
     4261 ggaaggtcgc cccactgctc cttgatgagc tgggctatgc ggttactttg gtctttggta
     4321 aatggcagag cgatacagca ggcctcctct acccgagcca aaatggactg ataactttct
     4381 ctcacctgcc caacaaaagc cccagctgga gcagtcacca gatgggcggt atagacctcc
     4441 tccatctcac aatcccagac atatgaagac agctgaccag cctcatcaac ctccacaacc
     4501 gcctcaaact gcccctccat gaagacctca cggtaggtgt aacgattgtc ggcgagaata
     4561 aaaccgaaag ggatgaggga ggggaggtgg gcaatttgtc tagacatttt aactccttta
     4621 aagtaatata tagagaaagt ataacaaaat ctgtaaaaga atttattgtg gaggtcaaat
     4681 cttgtcaaaa aaaattatta gtgtggtagc tgcagcaatt gaaaaagatg gaaaaatatt
     4741 ttgcgctcag cgccctgaag gaaagagttt aggagggtat tgggaatttc caggaggaaa
     4801 actcgaagcc aatgaaactc ctgaagaagc cttagttcgt gaaatcaaag aagaatttga
     4861 ttccgaaatc gaaatagtat ctttcatcaa cgaagcatct tatgaatatg attttggtat
     4921 cgtgacaatg aaaacctacc tttcaaaatt agtcacgggt gatttaactt tattagaaca
     4981 ccaggattct aaatggctcc ccatcgaaga tttagagaca ttagaatggg ctccagtaga
     5041 tattcctgcc gtcaaatgtt tgcaacaaaa atagagattc gctggaatct ctatttttta
     5101 tttatctgtc aaatacttat acaagtttgt ctccactggt gaatccaact taaataacat
     5161 ttggacaact gaatctccat ttttcattac ttcacttgca ctattttcaa cgtatgatag
     5221 tggaccaaga taataaaatt ctccaccttc tgaatcatct tttatgacaa aaagttctaa
     5281 cctcaatcca ttttcattag attgagtaat cgtcgataca tcattagaat ctaatgtacg
     5341 tttgttcttt gaaaaccact tcaaagttga ctcatttaga agttcgtcat cgtattttat
     5401 ggtatcacta atatcctcac ttttatggta agtgatgaaa atcggacaag aattggtgtc
     5461 cttatcaatt ttgtatccac caatatttaa aggtggttcg tcttttgcga cattcattaa
     5521 tttaagcact tcacgtcgag tatatttctg accaagtgtg aaaatttcag gataatcttt
     5581 cgattttaga atccctgttt caatgacatc caaaaataat tgagtgaatt tggtattatt
     5641 caccaaagat tcttggattt cttcattcaa ccgatacagt tcaccgtcaa aagtaaccag
     5701 tgcatccgta ccatatttct tttgctcctg ggcttttaga aatgataggt ccaacactct
     5761 tgttaccgaa tctaaaacat ctgtttgaaa atctaaatca tgctcaataa tacattcaaa
     5821 ccatttatct gacgaaacta gtccctcatt ttcgacaagc aacttcaaca aatacagttc
     5881 atgttttcgt ttgccattca agatttcaaa tgtaataaaa ttcaaaaatc gcttttctac
     5941 ttctgataga aggattgttt cttctgaaaa tttattgatg acatctccgt aattttgaaa
     6001 actagagttt tcaaaaaaga caagcggatc aatgctgttt aattttatga aatctgatag
     6061 atacggaact ctacccaact tattctctaa gtctttaaaa gcatctcgta aaattttgat
     6121 tgatgagagt gtcgtatttg tgatagaaga aaaaatttgt tctttggcaa ccttctcaaa
     6181 gttgattgtc gtcaatcctt ttaaaatgtt gggctctctg acctcacgac gataattgtc
     6241 tttgttcata gactgatcgc caaatagtgc aacaggaatt agatagttgt tttgatagtt
     6301 tccaatgaaa tcaataatcg taacatattc tttcgaatcg tgctttcgca agcctcgacc
     6361 taattgttga ataaaaatga tactcgattg ggtattgcga agcatgacaa cctggttgac
     6421 actcggaata tcaattccct cattaaaaat atcaaccgtc agaatatagt ctaagtttcc
     6481 attttctaag tcttgaacta ctctctgtcg ttccttttgg ctatgttccc cagaaagagc
     6541 gcttgtacgg agtcctcttg cattaaactg cccctctagc tcttttgctt catttactga
     6601 agaacagaaa atcaatcctt ttaccgcctc accacttact ccatagtaag caattttttc
     6661 taaaatatga ttgacacgtt gttcagaaac taaatttgaa aaagtggctt tttcatcaat
     6721 taattggcca tcaatcttaa tgtctgaaac accgtagtat ataaatggac aaagcatatc
     6781 attatcaagt gcctcttgta aacggatctc ataggcaata ttatagtcaa aaagctcata
     6841 aatattttgt ccatctgttc gctctggtgt tgctgtcatc cctaaataaa aatctggctg
     6901 aaaataattc atcacttttt tataggagtc tgcacctgct ttatgaacct catcaatcaa
     6961 aatatagtta aagaaagttg ggtcaaaagc ttgaaggtta tctgctctcg aaatcgtctg
     7021 aatagtcgca aagatatacc tcttctgtga tatatccatc ccactcttat aaatacagcc
     7081 ctcatcatcc tcaaatccta acaccttttg aaagtctttt aatgattttt gtaggatttg
     7141 ttctcggtgg actataaata acattcgatc tggattgtat tgtttgacat caaaggcaga
     7201 aagataggtt ttacctgttc cagttgcact aatgaccaga gctttttgtg caccattttt
     7261 cctaacggtt gcgagacctt ctagagcttg ctcttgcatc ttgttgggac gaatggtttc
     7321 ttggtaagat gctattgact cgtcccgaat catcgctgtt tttatcaccg tctgcctacg
     7381 agctgaatat gcattgattg cttctaggtc taaaacaatt gatttttccc aaatacgatc
     7441 aaactcttct tttgcattct ggataaaatc accgttatgt gttgaagtca atttcacatt
     7501 ccactcatag ttaattttca aggctgtatg agttaaattt gaactaccag aaatgataac
     7561 ctgtttatct ttttgctcaa acagataaaa ctttgcatgc atttgcaaat tgactggtgt
     7621 tatccgtact tggacatttt tcagtttaag caattctttc atcgctatgg gatcgttgaa
     7681 atccagatac ggagaaatca aaattctccc ttggatcccc tcatccgcca aatctgataa
     7741 ttgactttta attagggcta gtccagactg agtaataaaa gccacactga aggcaaaaga
     7801 ttgggccttg cttaactctt cttgaatatc atttaaaaca tagcgatgag tctctgtatc
     7861 atttattaaa attttaggcg aatagacccc ttcttgaaaa atctctctat caatgaaacc
     7921 atattgcaaa gaatgaagaa gctggtcttg gaataagttg ttgttggaca tgataggttt
     7981 cctttatctc tatatagaat tattatctgt aaaattcaga aaattgtaaa gtcaggaaac
     8041 aaattattta ataacttagt agaaaatttt ctccacatcc aagggaatga gcctccactc
     8101 tccattttcc ctccacggtg caaccaaatt atcctcctct ttaagaccag tataaacgca
     8161 gttgaatctc aaagattcgg ttcttatcga actatcttgt tcccattcta ctttcacagt
     8221 aatctctgac tttgcatatg ttttttcatc aatcgttatg aattcaaatg aattatattt
     8281 cttttcatta aatatttctc ttatttgacc tgcccatttt ccattggaag tattcatatt
     8341 ttttgcatct tctaataact tcgaaagttg tccataattt ccatctctcc agtattcgaa
     8401 catatctaat atagggtata aatatgaata ctcgccataa tcatctctta caccacttac
     8461 gggaatatca gtaccgagaa ttatatcccg tcttttccaa tttgctattt catcctcaaa
     8521 cttctttagt tcctgatatc tattaatcaa atccacaata gattcgtttg tttgtgattt
     8581 aacaaaacta tcttttctct caacctcatt tgttttttgc tttatccaat cagcgacagc
     8641 aaaaagtaat gaaacacact tgcaagatac atactcatta ccaaaattta tatcccttcc
     8701 atgtaatata ccatttctgt atggtaatct aatttcatct ttattcgttt ttcgtcgact
     8761 agatgtaaaa attgatacta tttcttttaa cgacttatta ctacccacaa atgaatccca
     8821 tacatttagt tctaaacctt ctgcaaacaa acacttgtta tctttatttt ttgtaaaatc
     8881 attaactgca ccgtcaacaa tgattaaacc aagtggcacg ctacaaatat aattgccttt
     8941 aaaatgttcc tcaaaaaata catctatcaa atgagaccta tctaaaagaa ctttggaact
     9001 ttttttaatc caatgcactt tttttcttac ttcatttttg aagtaatcta tcagtattct
     9061 ttctgcttta tcaataccat ttttttcata ttccgagttt actctctgca ctatatcaaa
     9121 gtccatactt tcatagagac accaaccttg ttgagaaaaa ttttccataa atagggcaga
     9181 ttcttgagaa aaattaaaaa ccgaactttt taactcagaa atttctgacg gcacttctcc
     9241 attcaatgac atagaaaaat cttccaaatt attaagttga tctattaaat aatttaatga
     9301 taccaaatta ttatccactt gattggcctc ttatacataa tatattaaag aaattatacc
     9361 acaaaaccca gccattttag gttgggcttt ttatcgtatt ctacctactt aaccaatttt
     9421 ttcatttctg cgatacgtcc tactgtcgca tcatacttag cttggtagtc ggcttgtttt
     9481 tctttttctt tttcaacgac ttctggtttg gcgttggcga tgaagcgttc gttgctgagt
     9541 tttttgccga ccatgtctag ttctttttgc cacttggcaa gttctttgtc tagacgagcc
     9601 aactcttctt cgacgttgag gaggtcggcg agtggcaaga agatttcagc accggtgata
     9661 acggctgaca tggctagttc tggtgcggca atgcttgagc tgatttccaa ctgctctggg
     9721 tttgtaaagc gtcggatgta gttttcattt gccttgaaga aggtttcaag ctcgctatct
     9781 gccgtcttaa tcaagatggt aatcggctta gaaggagcaa cgttgacctc tgctctgcta
     9841 tttcgcaccg aacgaatcag atccttaagg ctttccactc ccttgtgagc ttcagcgttt
     9901 tcaaaggctg ggttgacaac agggtaagct gccaccacga tagagccctc tgcgtactga
     9961 gcgaagatct cttccgtcac aaacggcatg atagggtgga ggaggcgaag gatttggtcc
    10021 agcgtgtaga gaaggacaga gcgggtcatg actttctcag cctcgttgtc gctgtaaagc
    10081 acctccttgg tcagctccac ataccagttg gcgaactctt cccagatgaa gttgtagagg
    10141 atgtggccag ccacaccaaa ctcaaacttg tcgaagtttt cagtgacctt agcgatggtt
    10201 tcgttaaggt tgtggagaat ccagcggtcc gtcacgttgc cagcctcacc agctgcgact
    10261 ttggcaacat tctcacgcgc cgcatccaaa gtcaagcctt cattgttcat gaggatgtag
    10321 cgggaaatgt tccaaatctt gttgatgaaa ttccaagaag cgtccatctt ctcataagag
    10381 aaacgaacat cttgaccagg ggcagagcca tttgacaaga accaacgcaa agcgtccgca
    10441 ccgtatttct cgatgacatc catcgggtca atcccgtttc cgagtgattt agacatcttg
    10501 cgaccttctt cgtcacgaat caaaccatgg atcagcacgt tcttgaatgg ctgactgcct
    10561 gtgaactcaa gcgattggaa aatcatacga gacacccaga agaagatgat gtcgtagccc
    10621 gttaccaagg ttgaagttgg gaagtaacgc tggaagtccg ccgcattttc atcaggccag
    10681 cccatagttg agaatggcca aagggcagag ctgaaccagg tgtctaggac atcctcatcc
    10741 tgtacccaac cgtcacctgc tggggcctct tctccgacgt acatttcgcc agattcgtta
    10801 taccatgctg gaatctgatg gccccaccaa agctgacgag aaatcaccca gtcgtgtaca
    10861 ttttccatcc attgaaggaa agtatcgttg aaacgtggtg ggtaaaattc taccttatca
    10921 gctgtgtctt ggttggcaat ggcattctta gccaattggt ccattttaac aaaccattga
    10981 gttgacaaac gtggctcgac taccacacct gtacgctcag agtgtccaac agaatgcaca
    11041 cggttttcga tttccacaag ggctcccagt tcttgcaact tagcaaccgt tgccttacga
    11101 gcttcaaagc ggtccatacc tgcaaattcg cctgccaact cgttcatagt accatcgtcg
    11161 ttcataacat tgacttgtgg cagattgtgg cgttgaccta cgaggaagtc atttggatcg
    11221 tgggcaggtg tgattttcac aacccctgta ccaaattcag gatccgcgtg ctcatccgca
    11281 acgatcggga ttggcttgtt gacgattggt aggataacat ttttgccaat caagtccttg
    11341 taacgtgggt cttctgggtt aaccgccacc gcaacgtcac cgaacatggt ttcaggacga
    11401 gttgtcgcaa cttgaagggc acgagaaccg tcttccaaca tgtaattcat gtggtaaaag
    11461 gcaccttcta cgtccttgtg aataacttct atatctgaaa gggctgtgcg agctgcaggg
    11521 tcccagttga tgataaattc gccacggtag atccagcctt ttttgtagag ttcaacaaag
    11581 accttgcgaa cagcttttga caagccttcg tccagcgtaa agcggtcacg ttggtagtcc
    11641 aaagacagac ccaacttgcc ccattgctca cgaatggtcg ctgcgtattc atccttccat
    11701 tcccagactt tgtcgaggaa tttctcacgg cccaagtcat aacgagtcac accttgctca
    11761 cgcaagcgct cctcaacctt agcctgagtg gcaatccccg cgtggtccat acctggcagc
    11821 cagagggtgt caaagccctg catacgtttc tggcggataa taatatcttg aagggtggta
    11881 tcccaagcat gtcccaagtg caacttacca gttacgtttg gtggcggaat gacgatagaa
    11941 tacggcttag cctccgcatc gcctgacggc ttaaagacat cttggtccaa ccaagtttgg
    12001 taacgaccag cctcaacctc agctggatta tattttggtg ataattcttt tgacattaat
    12061 ttttctcctt tagtattctt taagaaaatt ggtttatact atcctcaagc tagaaatagc
    12121 aaaacttttc tttttcatat aatctcctag aaatagtcag tcctttgggc tggctatttc
    12181 gtttttcatt cttgaaccct gcatctacgg gcgagagagg tttgtgtaac gttaataact
    12241 aatttcgctt attatttcgc cacgatagta cacttcgata tgatcagata tttttttagc
    12301 ttcctcttca tcaaatgctt ctatgagcca ttgtatgaaa ttttcgtcta atgtttttct
    12361 gtttatgata ttatttgctt tcgatgattg attagaatca tcgtattctg aagacaggct
    12421 accaattctg ataattatct tatcatattt cacatctgaa aatggcaaga cattctcaac
    12481 ggtttcaatc ttcgtgtttg caacattggg aaacaactgc ccttggattg aagtatcgtc
    12541 aggataatac gtattgaaaa aagtatcacg ccatttccaa aaacctattg ctacggatag
    12601 tatcactaca atcaccacta ctaatttttg tttcttggtg aaggtttgtg tcaaactttt
    12661 catttgtata cctccatgct ccccttcctc aataccagtt tattgttttc ctttataaac
    12721 tccgctctca ctgtgtacag agtaggacca aaagcaatat tagggatcaa atctttttgt
    12781 tcaaacaccg tttcaatagc aaatccatct tctataatct taatttctgt tggatctgta
    12841 ccctcgtctg ggatataata ttttttaaat gtgtattttt tgaattcctt gtttgtatct
    12901 aattcagtga caatcgtttc tttcatagat attatttgat ttttagtagc accctcgctt
    12961 gtataggatg caccattttc aataatcaaa ttaccatcat agtaaacttt gtaggaaccg
    13021 aattcctctt caagttcatc cttatttaaa gagtctatcc aaatatcttg ta
//
LOCUS       DASGBY010000055        12482 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.055, whole genome shotgun sequence.
ACCESSION   DASGBY010000055 DASGBY010000000
VERSION     DASGBY010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12482
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.055"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(40..2208)
                     /locus_tag="U1396_001137"
     CDS             complement(40..2208)
                     /locus_tag="U1396_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5342331.1"
                     /translation="MKKFLSFEFWQKFGKCLMVVIAVMPAAGLMVSIGNSIPLISPES
                     ELLIRIGNIIAQIGWGIIGNLHLLFALAIGGSWAKEKAGGAFSAGLAFILINLITGHF
                     FGVTTDMLADAAATVTTVFGTEIPVSGYFVNILGQPALNMGVFVGIIAGFVGATTYNK
                     YYNYRKLPDVLTFFNGKRFVPFVVIYRSVLVALGLAIFWPVVQTGINSFGKWIASSQD
                     TAPILAPFVYGTLERLLLPFGLHHMLTIPMNYTSLGGTYDILTGAQAGAQVFGQDPLW
                     LAWITDLINLKDAGDMAQYNDLLANITPARFKVGQMIGSSGILMGLTYAMYRNVDEDK
                     KHKYKGMFISSALAVFLTGVTEPIEFMFMFAAMPLYVVYAFVQGAAFAMADVVNLRMH
                     SFGNIEFLTRTPMAIKAGIGMDVINFIWVTALFAVGMYFIANFMIKKFNLATAGRNGN
                     YDTETTDVVSNSNVDTADANSQVVQIINLLGGRDNIADVDACMTRLRVSVKDVAQVGD
                     ENAWKQAGAMGLIIKDSGVQAVYGPKADVLKSDIQDLLESGVAIPRTEIVATEEVAPE
                     TQFKGVTETVYSVAEGQAIAITEVKDPVFSQKMMGDGYAVEPSSGNVYAPVSGIVTSV
                     FPTKHAVGILSDKGVEVLVHVGLDTVALNGAPFSAKVTDGQRVEAGDLLLVADLDAIR
                     SAGRETTIVVAFTNTAEIKSVSLGNLGQVSQDSQVATVEL"
     gene            complement(2242..3033)
                     /locus_tag="U1396_001138"
     CDS             complement(2242..3033)
                     /locus_tag="U1396_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEM5342332.1"
                     /translation="MKLLTINVHAWLEERQDEKLDVLAKTIAEKAYDVIALQEVNQLI
                     TADLVTKDLKADNYGLILLEKLRALGQFDYSYYWSNSHIGYDKYEEGIAFLTKLPVYE
                     VDPFYCSQNKSVDSILSRKIMGLTVFYQDQLIDLYSCHINLPGSEEEDQLDNVRTIVE
                     RTGNRRFKILMGDFNTDAFSDREAYEAITELGLYDSYNLAMEKDQGITVEKAIDGWAG
                     HSQEKRLDYIFLNQKKEVLSSLVIFNGENRPIISDHFGVEVEINV"
     gene            3232..3939
                     /locus_tag="U1396_001139"
     CDS             3232..3939
                     /locus_tag="U1396_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HEM5342333.1"
                     /translation="MSKYKKVYQDIKKKIEEQVWSTGQALPTENELMEVYSYSKDTIR
                     KALSLLEMDGYIQKKQGKSSIVIEHGLMKDQYLSEIKTAGELNKRSQHQIQTQLTSLY
                     IIQGQEDLMSTFEVDDKVDFYRVSRVRTIDGERLEYDISYFDRRVVPYLSKEIAESSI
                     YRYLEEELHLTISHSRREISFRFANEEEKQLMDLGDYDMVVVVTSITYLSNGQAFQYG
                     TISYRPDKVSFVSMAKR"
     gene            complement(4166..6430)
                     /gene="glgP"
                     /locus_tag="U1396_001140"
     CDS             complement(4166..6430)
                     /gene="glgP"
                     /locus_tag="U1396_001140"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM5342334.1"
                     /translation="MTKFTTFAETNTSKKLADLTNEEIYLQLLNYVKDAAASKPKNTG
                     KRKVYYISAEFLIGKLLSNNLINLGVYKDVQAELAAAGKSLAQVEDVEPEPSLGNGGL
                     GRLASCFVDSMSTLAINGEGVGLNYHCGLFRQVFKKNEQEAEPNFWIENDSWLIPTTI
                     SYDVPFKNFTLKSKLDRLDILGYKKETKNYLNLFDIESVNYDLITDGISFDKTDIKEN
                     LTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLLIDEAVERGSNLHDLADYAYVQINDT
                     HPSMVIPELIRLLTEKHGIEFAEAVAIVKNMTGYTNHTILAEALEKWPLEFLEEVVPH
                     LVDIIKELDALIRAEIKDPAVQIIDESGRVHMAHMDIHFSNSVNGVAALHTEILKNSE
                     LKAFYELYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLLAFA
                     DDKEVHAKLAEIKFNNKLALKRYLKDNKGIELDENSIIDTQIKRFHEYKRQQMNALYV
                     IHKYLEIKNGNLPKRKITVIFGGKAAPAYIIAQDIIHLILCLSELINNDPEVSKYLNV
                     HLVENYNVTVAEKLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIA
                     ELAGMDNIYTFGKDSDTIIDLYDKAGYVSADYYNGDANIKRAVDFIVSDEVKALGNEE
                     RLGRLHHELISKDWFMTLIDLAEYIEVKEQVFADYEDQDSWNKKVVHNIAKAGFFSSD
                     RTIEQYNQDIWHSN"
     gene            complement(6423..7931)
                     /gene="malQ"
                     /locus_tag="U1396_001141"
     CDS             complement(6423..7931)
                     /gene="malQ"
                     /locus_tag="U1396_001141"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019312918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM5342335.1"
                     /translation="MTNRTSGILMHITSLPGKFGIGTFGQSAYDFVDFLVETKQTYWQ
                     ILPLTTTSYGDSPYQSFSAIAGNTHLIDFDLLVEDGLLATEDFQDVNFGDNPEKVDYA
                     LIYQVRRPILEKAVQAFLQDDKKKAAFLEFEKANSSWLTDYAEFMAIKEYFGNKALQE
                     WEDKKVVARNEEALDKYRLELANQIDYYKVTQYFFFSQWKQLKEYANKHHIKIIGDMP
                     IYVSADSVEVWTKPQLFKLDSERKPLYVAGVPADNFSADGQLWGNPIYDWPEHEKTGY
                     NWWIYRIHESFKLYDVLRIDHFKGFSDFWQVDGKAEVAKVGTWEPGPGYNLFKAVKET
                     LGDLPIIAEDLGNIDAKARKLLADCGYPGMKILEFGFFDVTGKSIDAPHRCIPNSVAY
                     TGTHDNEVVNGWYNNLEPEQQEYVDAYSNRKPIEKVSQAMLRMLFATVSDTAIATMQD
                     VLDLGEESRMNMPSTIGGNWEWRMKAEDLTQERKDFLTKMTLLYQRGNENHD"
     gene            complement(8113..10212)
                     /locus_tag="U1396_001142"
     CDS             complement(8113..10212)
                     /locus_tag="U1396_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5342336.1"
                     /translation="MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEF
                     AMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRNLTQDAREGKLDPVIGRNKEIQE
                     TAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
                     GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPAL
                     SRGELTVIGATTQDEYRNTIHKNAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHH
                     NIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQHPVTDIQTLEAEMAE
                     AKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIP
                     VSQMGASDIERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVG
                     PTGVGKTELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYDDNSHTL
                     TERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNA
                     GFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNN
                     TLAKKGIQLTVTEAAKGFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYL
                     EADVVDGSIQIKEQSFA"
     gene            complement(10627..11037)
                     /locus_tag="U1396_001143"
     CDS             complement(10627..11037)
                     /locus_tag="U1396_001143"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM5342337.1"
                     /translation="MIQPIMKDIFFLQQKSEPATQLDVQVGQDLQDTLSANAHACVGM
                     AANMIGIKKRIIIVNMGFTNLVMYNPVLISKAKPYQTEEGCLSLEGTRPTTRYQEIEV
                     EFLDASWKKISLKLTDFQAQIVQHELDHLEGIII"
     gene            complement(11057..12436)
                     /locus_tag="U1396_001144"
     CDS             complement(11057..12436)
                     /locus_tag="U1396_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342338.1"
                     /translation="MKEKICKKLKELAKKPVRRIDWSGERWFVRRYKQGLALAWIVYF
                     LLREELVKEILKPVSNYLMNFSCIQWFYVNKLTVLLVFTALLFLAKSIFSILRWCEVI
                     RYFPLGKKKYPEYDFPFQEELVSFLNRKEERGRNIFWLDGSWGSGKTHFIRTFFENQL
                     YKPREIYYISCFGIRTREQAEKALIEEIEQHSTFGSLDHIPVVSSLVKWSYKILGLDL
                     MKKYSLIIFDDLERVAYSEKQKDKPEDFNDLLGFIDHLANHRNQKVLVLMNKEDMGNT
                     YQKIVEEKFKPVVTNIPSQKDIIKNMTEEYDDMSREFIRNIYLFQHEFGFINLRAIPF
                     MYSVFESVRQNGVYSVEWFVTTLNNQMREYMTSIMREVRGEVGEEVIYIDEYLNDNAY
                     WKGYLDELNKEDYLNMENKLDIYGEILKQLDKEFNSEKNLIIIKYRDSVYEFAIDNDT
                     LRLIESTYS"
BASE COUNT         3579 a         2710 c         2347 g         3846 t
ORIGIN      
        1 gagttgacta caatcatctt ttcaatcttt ttttactttt tacaactcaa ctgtcgcaac
       61 ttgactatct tgactaacct gtccaagatt tccaaggctg acagatttga tttcagcagt
      121 atttgtgaag gcaacaacga tggttgtttc acgtcctgct gagcgaatgg catccagatc
      181 tgcgacaagg agcaagtctc ctgcttcaac gcgttgccca tctgttacct tagctgagaa
      241 tggggcaccg tttagtgcaa ccgtatctag gccgacgtgc accaagactt ctacaccctt
      301 gtcagacaaa atcccgacag cgtgtttggt tgggaagaca ctggttacga tacctgaaac
      361 tggtgcgtaa acattgccgg agctaggctc aactgcataa ccgtcgccca tcattttttg
      421 tgagaagacc ggatctttca cttctgtgat ggcaatggct tgcccttcag caacagagta
      481 aactgtctcc gtcacacctt tgaactgagt ctcaggagca acttcttctg tcgcaacaat
      541 ttccgtacga gggatggcta cgcctgattc tagtaagtct tgaatgtctg atttgagaac
      601 atctgctttt ggtccgtaga ctgcttgaac acctgagtct ttgataatca agcccatagc
      661 accagcctgt ttccaagcat tttcatctcc aacctgtgcc acatctttaa cactaacgcg
      721 aagacgagtc atacaagcat ccacatctgc gatattatca cgaccaccaa gcaagttgat
      781 gatttgaacc acttgtgaat tggcatccgc agtatctacg tttgagtttg aaaccacatc
      841 cgttgtttct gtatcatagt taccattgcg tccagctgtt gctaggttga atttcttaat
      901 cataaagttg gcaatgaagt acataccaac cgcaaagagg gctgttaccc agataaagtt
      961 aataacatcc ataccgatac cagctttgat cgccatcggt gtacgtgtaa ggaattcgat
     1021 attaccaaat gagtgcatac gcaagttgac aacgtcagcc atggcaaaag ccgcaccctg
     1081 tacaaaagca taaacgacat agagtggcat tgctgcaaac atgaacataa actcaattgg
     1141 ttctgttaca cctgtcaaga atacggcaag tgctgaagaa ataaacatac ctttgtactt
     1201 atgtttttta tcttcatcca cattgcggta catagcgtaa gtcaatccca tcaaaatccc
     1261 tgatgaacca atcatttgac caactttgaa acgggctgga gtaatgtttg caagaaggtc
     1321 attgtactga gccatatcac cagcgtcttt gaggttgatc aagtctgtaa tccaagccaa
     1381 ccagagcgga tcttgtccaa atacttgtgc acctgcttgt gcacctgtca agatgtcata
     1441 ggtaccacca agtgatgtat agttcattgg aatggtcaac atgtggtgca aaccaaatgg
     1501 aagaagcaaa cgttccaagg taccataaac aaaaggtgca agaattggtg ctgtatcctg
     1561 tgagcttgca atccacttac caaagctgtt gattcctgtt tgaacaactg gccaaaagat
     1621 agctaatcct agcgctacaa gaactgagcg atagataacc acaaatggta cgaagcgttt
     1681 accgttaaag aaggtcaaaa catcaggtaa tttgcggtaa ttgtagtatt tgttataggt
     1741 tgttgcccct acaaaaccag cgatgatacc aacgaagaca cccatgttca gagcaggctg
     1801 acccaagatg ttgacgaagt agcctgaaac cggaatctct gttccaaaaa cagtggttac
     1861 ggttgccgct gcatctgcaa gcatgtcagt cgtcactcca aagaagtgac ctgtaatcaa
     1921 gttaataagg atgaaggcaa gacctgctga gaaggcacca ccagcctttt ccttagccca
     1981 gctaccaccg atagccaagg caaagagcaa gtgaaggttt ccgataatcc cccaaccgat
     2041 ttgggcgata atattcccga tacgaatcaa gagttctgat tctgggctga ttaacggaat
     2101 agagtttccg atagaaacca tcagacctgc tgcaggcata actgcaatca cgaccattaa
     2161 acacttaccg aatttttgcc aaaattcgaa actaagaaat tttttcattt tttctccttt
     2221 attttttggc tctgtgccat tttatacatt aatttcaact tccacaccaa aatggtctga
     2281 aataatcgga cgattctctc cattgaaaat cactaagctg gataaaactt cctttttctg
     2341 atttaagaaa atgtaatcca atcgtttttc ctgactgtga ccagcccagc catcgatagc
     2401 cttttcaacc gtaatcccct ggtctttttc catcgctaga ttgtatgaat cataaagccc
     2461 gagctctgta atcgcttcgt aggcctcgcg atctgagaag gcatcggtat taaaatctcc
     2521 catgagaatc ttaaaacgtc tattgccagt ccgttccaca atcgtacgaa cgttatcaag
     2581 ctggtcttcc tcttcactcc ctggaagatt gatgtgacaa gaatacaggt cgatcaactg
     2641 gtcttgatag aagaccgtca agcccataat ttttcgtgat aggatggaat caacagattt
     2701 attctgacta caataaaatg gatccacttc ataaactggc aacttggtaa gaaaggcaat
     2761 cccttcttcg tacttatcgt agccgatatg tgagttgctc caataatatg aataatcaaa
     2821 ttgtcccaag gctcttaatt tttctaataa aatcaagcca taattatccg ccttcaagtc
     2881 tttcgttacc aaatcagcag ttatgagctg attgacctct tgaagagcga tgacatcata
     2941 agccttttca gctattgttt tggctaaaac atctagtttt tcatcctgcc tttcttctaa
     3001 ccaggcatgg acattaattg ttagtaattt cattgctccc cctctctctg aaaatgcgta
     3061 accgttttct tttatagaaa tagtataacg taaacgtttg cattagtcaa tagcttttcc
     3121 gtaatatttc aaacttttac gtaaaagttg tgtattctac taaataaaat agatgtattg
     3181 cccctttctg gctcttttat gatacactaa tgggtagaaa gacaggaaac tatgagtaag
     3241 tataaaaaag tttatcaaga tattaagaaa aaaatcgaag agcaggtttg gtcaactgga
     3301 caggccctac cgacagaaaa tgaattaatg gaagtgtatt cctactccaa ggacaccatt
     3361 cgcaaagcac tatctcttct tgaaatggat ggttatattc aaaagaaaca ggggaaatct
     3421 tctattgtta tcgaacatgg tctaatgaag gaccaatatc tttctgaaat taaaacagcg
     3481 ggcgaattga ataaaagatc acagcaccaa attcagaccc agcttacttc gctttatatt
     3541 attcaaggcc aagaagattt aatgtcaact ttcgaagttg atgataaggt agatttctat
     3601 cgagtgagtc gggtacggac aattgacggt gagcggttgg aatatgacat ttcctatttc
     3661 gaccgtaggg tcgttccata tctcagtaaa gaaattgccg aaagctctat ttaccgctac
     3721 ttagaagaag aactccattt aacaatttct cattccagac gtgaaatctc cttccgtttt
     3781 gcaaacgaag aagaaaaaca attgatggac ttaggagact atgacatggt cgtcgtggtc
     3841 actagtatca cctatctttc aaatggtcaa gctttccagt atggaacaat tagttaccgt
     3901 ccagacaaag ttagctttgt atcaatggcg aaacggtaaa aggaaacttt cgattttttt
     3961 gaccaagtgt acaaaacttc tagaatttta tagttataaa aagaatgtct ccgcttttgc
     4021 agagacattc tttgcattta tatactaagg agagcaccaa taatggtaaa aactggcagt
     4081 ttttattctt caacacatag gaagaattga tctgataagt tttggagtgg ttcaatcaac
     4141 tttcctacta attgttggaa ttcaattagt tactgtgcca gatgtcttga ttgtactgtt
     4201 caatggtacg gtcagatgag aagaatccag ctttggcaat gttatgaaca actttcttgt
     4261 tccatgaatc ttgatcttcg taatctgcaa agacttgttc ttttacttca atgtattcag
     4321 ccaagtcaat caaggtcatg aaccagtctt tcgaaatcaa ttcatggtgc agacgaccaa
     4381 gacgttcttc gttaccaagt gcttttacct catcgctaac gataaagtca actgcacgtt
     4441 tgatattggc atcgccattg tagtagtccg cagatacata tccagcctta tcgtacaagt
     4501 cgatgatggt atctgaatct ttaccaaatg tatagatgtt gtccatacca gccaactcag
     4561 caatctcaac gttggcacca tccatggtac caagtgtcaa cgcaccgttg agcatgaatt
     4621 tcatgttacc agtacctgac gcttctttag aagccaatga gatttgttct gaaatatctg
     4681 ttgcagggat gagtttctca gcaactgtta cgttatagtt ttccaccaaa tgaacgttga
     4741 ggtacttgct cacttctggg tcattgttaa tcaactctga caagcaaaga atcaagtgaa
     4801 tgatgtcttg tgcaatgatg taggcaggtg ccgctttacc accgaagata acagtgattt
     4861 tacgtttcgg aaggttacca ttcttgattt caaggtattt atggataaca tacaaggcat
     4921 tcatttgttg gcgtttgtac tcgtggaaac gtttgatttg tgtatcgatg atagagtttt
     4981 catccagctc gataccttta ttgtctttaa ggtaacgttt gagagccaac ttattgttga
     5041 acttgatttc tgccaactta gcatgcactt ccttgtcatc agcaaaggca agcaattttt
     5101 caagtttagt cgcatctgtc aagtattcat cgccaatcaa ttctttgatg tagtcagcga
     5161 ggtcttggtt ggcaaattcc aaccaacggc ggaaagtgat accgtttgtt ttattgttga
     5221 atttttctgg gtaaagctcg tagaaagctt tcaattcaga gtttttgagg atttctgtgt
     5281 gaagcgcagc tacaccgttc actgagttag agaagtggat atccatgtga gccatgtgta
     5341 cacgacctga ttcatcaatg atttggactg ctgggtcttt aatttctgca cgaataaggg
     5401 catccaattc tttgatgata tcaaccaagt gtggcaccac ttcttcaagg aactcaagtg
     5461 gccatttttc aagtgcttcc gccaagatag tgtggtttgt gtaaccagtc atattcttaa
     5521 cgatggcaac tgcttccgca aattcaatac catgcttttc agtcaaaaga cggatcaact
     5581 caggaatcac cattgatggg tgagtatcgt tgatttgcac ataagcgtag tcagccaagt
     5641 catgcaagtt tgaaccgcgc tcaactgctt catcaatcaa aagttgagca gcatttgata
     5701 ccatgaaata ttgttggtag atacggagca attcaccatt cttatcagaa tcatctgggt
     5761 acaagaagag agtcaagttt tctttaatat cagtcttgtc aaatgaaata ccgtctgtaa
     5821 tcaagtcata gtttactgac tcaatatcaa acaaattgag gtagttctta gtctcttttt
     5881 tatagccaag aatatcaaga cgatccaatt ttgatttcaa agtgaagttt ttgaatggaa
     5941 catcatagct gatagttgtt ggaatcaacc aagaatcatt ttcaatccag aagtttggct
     6001 ctgcttcttg ctcatttttc ttaaatactt ggcggaaaag accacagtgg tagttcagac
     6061 caacaccttc accgttgata gcaagtgttg acatagaatc aacgaaacat gaagccagac
     6121 gtcccaaacc accgttacca agtgatggtt ctggttcaac atcttcaact tgcgccaatg
     6181 atttaccagc tgctgccaat tctgcttgaa cgtctttgta cacgcccaag ttaatcaagt
     6241 tgtttgacaa gagtttaccg ataaggaact cagctgagat atagtaaact ttacgctttc
     6301 ctgtgttttt tggttttgaa gctgctgcat cttttacgta gttcaacagt tgaagataga
     6361 tttcttcatt tgtcaaatca gctaatttct tcgaagtatt tgtttctgca aatgttgtaa
     6421 atttagtcat ggttttcatt tcctcgttgg tatagtaatg tcatttttgt caagaagtct
     6481 ttgcgttctt gggtcaagtc ttcagctttc atgcgccatt cccagtttcc accgatagtt
     6541 gacggcatat tcattcgact ttcttcaccc aagtctagga cgtcttgcat ggttgcaata
     6601 gctgtatcac tcactgttgc aaacagcata cggagcatag cttggctaac tttttcaatc
     6661 ggcttacggt tgctgtaggc gtccacgtat tcttgttgtt ctggctcaag attgttgtac
     6721 cagccattga caacctcatt atcgtgagtt ccagtgtagg caactgaatt tggaatgcaa
     6781 cggtgtggag catcgatact cttacctgtt acatcaaaga aaccaaattc taagattttc
     6841 atgcctggat agccacaatc cgcaagcaat ttgcgagctt tagcgtcaat gtttccaagg
     6901 tcttctgcaa tgattggaag gtctccaagt gtttctttga cagccttgaa gagattgtag
     6961 ccaggacctg gttcccaagt acctactttt gccacctcag ccttaccatc gacttgccag
     7021 aagtctgaga aacctttgaa gtggtcaatc cgaaggacat cataaagttt gaaactttca
     7081 tggatacgat aaatccacca gttatagcct gttttttcat gttctggcca atcgtaaata
     7141 ggatttcccc ataattgacc atctgccgag aagttatcag ctggtacacc agctacataa
     7201 agcggcttgc gttcactgtc caatttgaat agttggggtt ttgtccacac ttcaacgcta
     7261 tcagcagaaa catagattgg catgtctccg atgattttga tgtggtgttt gttggcatat
     7321 tctttcaatt gtttccattg gctgaagaag aaatactgtg tgactttgta gtagtcgatt
     7381 tgatttgcca attctaagcg gtatttatca agagcttcct cgttgcgagc tacaactttt
     7441 ttatcttccc attcttggag agctttatta ccaaagtatt ccttgatagc catgaactcc
     7501 gcataatctg tcaaccaaga tgagttagcc ttttcaaact ctagaaaagc agctttcttc
     7561 ttatcatctt gtaaaaatgc ttgaactgcc ttctccaaaa ttggtcggcg aacttgatag
     7621 ataagagcat agtctacttt ttcaggatta tctccaaaat ttacatcttg gaaatcttct
     7681 gttgccaata agccatcttc aaccaagagg tcaaagtcta tcaagtgtgt atttcctgca
     7741 atagcagaga aagactggta aggagaatct ccatagcttg tagttgttag tggtaaaatc
     7801 tgccagtagg tttgcttggt ttccaccaag aaatctacaa aatcataggc agactgtcca
     7861 aaagtaccaa taccaaactt acctggaagt gaggtaatat gcatcaaaat tccactggta
     7921 cgatttgtca taaaaacgtt ttcctttctg tcggttacga atatagttta acgcaaacgt
     7981 ttgcacttgt caaggatttt ataaaaaaag ttttaatgta ctctagaaag cctattttat
     8041 agcatttgtt agcgaataac aaaaaagaaa aatcagatat ttctatccga tttttcaaat
     8101 tcttcactat ttttaagcaa agctttgctc ttttatttgg atgcttccat caaccacatc
     8161 cgcttccaga tatttgacat caacatgatc caaatagtaa tctgttacct tgtctcgaat
     8221 ctgattttca atcacacgac gcagaggacg ggctcccatg gccttgtcat agccttcttc
     8281 catcaagaat cctttggcgg cttccgttac cgttaattgg atgcctttct tcgccagggt
     8341 attattgacc tgggccaaga gtaattctac aatggctttg agatcatctt tatccaagtg
     8401 cttgaattcg ataactgcgt taaaacgatt aaggaactcc ggacggaaga atggtgcgat
     8461 acggtccatg atgtcttgat tttcttcacc ttctgccatt ccataaccaa aacctgcatt
     8521 agaagtcgcg ataataatgg tatttttaaa gttaacttgg ttgccctgtc catcagtcaa
     8581 atgcccgtca tctagcactt gcaagagaag ggtaatcact tgtggatcag ctttttcaat
     8641 ctcatccaga agaacgattg agtacggatt gcggcggaca cgctcggtaa gagtatggga
     8701 attgtcatcg tagccaatgt agccagctgt ggtaccgatt aatttggaaa cggctgtccg
     8761 atcgctgtat tcagacatat ccaaacgaat aatggcatcc ttgttaccaa acaagtctag
     8821 tgctagttgc ttagccagct ctgtcttacc cacacctgtc ggaccgacaa agaggaagga
     8881 accaatcgga cggttgccat catcaaaacc tgcacgattc cgacgaatgg cacgagatac
     8941 agcttccacc gcatcgtctt gaccgataac gttagctgcc agacgatttt tcaattcctt
     9001 gagtcgttca atgtcagaag ctcccatttg agagactgga attcctgtca tccgctcaac
     9061 cgcctgagcc acatcattaa cagtcgccac cactttctgt tgctccgtat gattatcaat
     9121 ctgtttttgt agcttatcaa tacggacttt ttcattcaag gctttttcat aatcctcttt
     9181 ctcagccgct tccaactgca actgttttgc ctcagccatt tctgcttcca aggtctgaat
     9241 atctgtcaca ggatgttgtg cagccaagtg tgcagcggtc acatcgatca ggtcaatagc
     9301 cttatcaggc aagctacgtt gtggaatata ttggacagaa taatcaaccg cagctctcaa
     9361 aacctcatct ggcaattcaa tattgtggtg ggcttcataa agcggcttaa tccctttcaa
     9421 aatctggtag gtgtcttctg cggacggagc attaaccttg acttcattga aacgacgagc
     9481 cagtgcggcg ttcttatgaa tggtattgcg gtattcgtcc tgtgtagtgg caccgataac
     9541 cgtcaattcc ccacgggata aagctggttt gagaatatcc gctaaaccct tggaacctga
     9601 gtctccgcca gtgctaccag ctcccaaaat ctgatgaatt tcatcaaaga agagaatgat
     9661 atttccagct tttttgactt catccacaag attttgcaca ttttcctcaa aagctccacg
     9721 gtactgggtc cctgcctcca agccagaaat gtcaatggag atgatttcct tgttcttaat
     9781 ggctgctggc acatctccgt tgacaatggc ttgagccaat ccttctacta ccgcagtttt
     9841 accaacacca gcatcaccga ccaaaacagg attatttttc gtacggcgag ccaaaatttc
     9901 cgctgtttct tggatttcct tgtttcgtcc aatgactgga tccaacttac cttcacgcgc
     9961 atcttgggtc aaattgcgcc ccagttttgc aagaatccca tctgacttta tctgaccttt
    10021 agcctgtgtt tgagccactt cttcggtctg tggcaggcga ccagtctgac ggtacatagc
    10081 gaattcctcc ggtgtcactt cacgcccatt gatagaatag cgacgtcgtt ctgtactgta
    10141 tccacccatg ttccccataa gttgattgaa aatatcgtcc atattgttaa aattattgaa
    10201 attgttgttc atagtagtta cctcgtttaa gtttcagtta tttttgactt ttactgacct
    10261 ttgtcagaaa ataaaatcta atagggtata atcctgtctt tcatagcaac ctcctcagaa
    10321 gtttgtcttt tactgaccaa taggttcaag agtaagtcaa accgttctcg tttgacctaa
    10381 actgaccttt tgttcaaaga atttgtaagg ccctttacct tacgaatctt attttacatc
    10441 attggtcagt aaaagtcaat gattttgttt gacctttttt gactttttat agtcgaatga
    10501 attagctttc agacaaggaa ctgaggcgca ggctatacta aagtatggca aggcaaaagt
    10561 gacgatgtat caaagttaat tcaaatgact ataaaaaaat ctacctgacg gtagatttgg
    10621 tagctactag ataataatcc cttccagatg atctagttca tgctgaacaa tctgggcttg
    10681 gaagtctgtc agctttaggc tgatcttttt ccaagaagca tccaaaaact ccacttcaat
    10741 ctcctgatag cgtgtggtcg ggcgagtacc ttccagcgac aggcagccct cttctgtctg
    10801 atagggcttg gccttgctga tgaggacggg attgtacatg actaggttgg taaaacccat
    10861 attgacgatg ataatccgct ttttgatgcc aatcatgttg gctgccatgc ccacgcaggc
    10921 atgagcgttg gctgacaaag tatcctgcaa atcctgaccg acctgcacat ctagctgagt
    10981 cgcaggctca gacttctgct gcaagaagaa aatatctttc ataataggtt gaatcatggg
    11041 gtagctcctt gctttgttat gaatatgtac tttctattaa tcggagagta tcgttatcaa
    11101 tagcgaattc atagacagaa tctctatatt ttataataat aagatttttc tcactattaa
    11161 attctttatc caactgttta agaatctccc cataaatatc taatttattt tccatattaa
    11221 gataatcctc tttgtttaat tcgtccaaat accccttcca gtatgcatta tcgttcaaat
    11281 attcatcaat ataaataact tcttctccta cttctcctct cacctctctc atgatactag
    11341 tcatatattc tctcatttga ttatttagtg ttgtaacaaa ccactctact gagtacactc
    11401 cgttttgccg aacactttca aatacactat acataaaagg aatggctctt aaatttataa
    11461 aaccaaattc atgttgaaag agatagatat ttcttataaa ttcccgactc atatcgtcat
    11521 actcctctgt catatttttt atgatgtctt tctgacttgg aatatttgtc acaaccggct
    11581 taaatttctc ttcaacaatc ttttgataag tattccccat atcctcctta ttcatcaaga
    11641 caagtacttt ttgattacgg tggttggcaa ggtggtctat gaaaccaaga agatcgttaa
    11701 agtcttcagg tttatctttt tgcttttcac tataagctac acgttccaaa tcatcaaaga
    11761 taataagaga atattttttc atcaagtcta agcccaaaat cttataagac catttgacta
    11821 aactactaac aacgggaata tggtctaaac ttccaaaggt cgaatgttgc tcaatctctt
    11881 caatcaatgc cttctccgcc tgttccctgg tccgaatgcc aaaacaggag atataataaa
    11941 tctcacgcgg tttgtaaagt tgattttcaa agaatgtgcg aataaagtgg gttttcccac
    12001 tcccccacga accatctaac caaaagatat tcctacctcg ttcttccttt cgattcaaga
    12061 aagaaaccag ttcctcttga aaagggaagt catattcagg gtattttttc ttacccagtg
    12121 gaaaatagcg gataacctcg caccatcgca agatggaaaa gatactcttc gcaaggaaaa
    12181 gcagagcggt aaatactaac aaaacagtca gcttatttac ataaaaccac tgtatacagg
    12241 aaaaattcat taaatagtta ctaacaggtt taagaatttc cttcaccaac tcttctcgca
    12301 aaagaaaata gacaatccac gccaaagcta aaccttgctt gtatcttcgg acaaaccatc
    12361 tctctccgct ccaatctatt cgtcgtacag gctttttggc gagttctttt aacttcttac
    12421 aaattttttc tttcataact tcctcctcag tttagtatac caaaaaaagc ctagttctca
    12481 cc
//
LOCUS       DASGBY010000056        12302 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.056, whole genome shotgun sequence.
ACCESSION   DASGBY010000056 DASGBY010000000
VERSION     DASGBY010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12302
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.056"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..3066
                     /locus_tag="U1396_001145"
     CDS             <1..3066
                     /locus_tag="U1396_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342339.1"
                     /translation="RNGIEVDIKNIKMEKGLLATDYSLSYEDLRSEIATYKRSAEESS
                     AELSRQIQLADGKAVEAKTYAQQTAEGFKTRLESLETYKDGESTRASQYFTASRAETA
                     KQLSAERAAIATNYVAKSTYDENVRGTTLKLNEIKSTADTAKQNLATYQNTVDRKLEE
                     LTSSTQTLDGKINTASAKVDTVAGQIRTEIGTVEAKIPTEAGGRNYILKSQAEISSTG
                     RWVSKPFNLSSDLLSNLSKIKTVTISCDVEGINVSALNSRKRYGLACSVEINGVVNYW
                     EVWQTQDTTKKRISQTFTVPEGKVITKFHSPTLWIQAAGDIKVSNPKIEFGRVPTDHT
                     LAPEDFANELSSVKTTITQTASGVEQLSTSLATTDNKVTTAEAKIRQLISDVSSKVSQ
                     TDYNTLTGRVDDAETAITQNATEISKRLTKTQVDKAITDKGFQTASQVDTAIAGKGYQ
                     TKSDVDNNITGRGYITSSALQPYALSTTVQNLVKETAGSFERQITETRGLIPTEVNQN
                     LFDVVFSDLRATGGASFVQSDDGWIEVTIKNRWSGFHWYYSDDINPSKKQYVVSYEAY
                     LVDTVAETARLESDFGSPDQLTLINKTPKRYTVVLNRPANIYNYINFVCNSSETGKKF
                     RIRNIKLEEGIVATPYIAPFPTTVLFNAVKDTVDAHKRLIGNGDSISQAIQSANKFER
                     SISSGGDVYQAIETAKGLVTEVSGTNGLKIQVSQLAGSWAVQNLTSSGQILNQINLLA
                     NGTNRIDGRLTHITGQTLIDNGVIINAMIGNLDAGKIKTGTLDAARIRANSIDGSKIV
                     FDQAFLNKMTANEALFKQLFAQSAFITSVQAVAVSAKQIAGGIAKALNGGMDVNFDES
                     KINFYTNVAAIRRIYTGHPTQFIKFETEGNYSRTIIGSNRNGGEVFNSATFAGIVVEN
                     TNNINTEDNVRIYGDNTLLRHAQGDVGWNINSVTQRIVPANMNAESEIWSKHFVAPDK
                     NSKPVRLDTAVAALWDIWNHIIYNNFEFNAALRTHIKARRDNWKFELNL"
     gene            3075..3293
                     /locus_tag="U1396_001146"
     CDS             3075..3293
                     /locus_tag="U1396_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342340.1"
                     /translation="MNQEQITQALRLTNNDLVTKLSEEMTTKNLLAVQLTEAQQTIAN
                     LRAEITDLTQQLDEATKPEEIIDQEEGE"
     gene            3296..3640
                     /locus_tag="U1396_001147"
     CDS             3296..3640
                     /locus_tag="U1396_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342341.1"
                     /translation="MTETTNNTLLNLEETTQPFDLATALQYMKENGEFIRCKNATNDF
                     YMYRDVQKRPAIVNGRRKFVDVETIWAFNQWGGTAATINIADMLNEEYWIMKFDENGN
                     PDWTDPTAGAEA"
     gene            3644..3943
                     /locus_tag="U1396_001148"
     CDS             3644..3943
                     /locus_tag="U1396_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000215499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342342.1"
                     /translation="MPIEHAERIAQSQVAWAILFILLFGFVIRYLIKTSDKREAKLMD
                     FHEQAKEESNKREDRLMNHLEKTTAEMGAMAREIGGLKGEVSLMSDRIEKIEKGE"
     gene            3946..4284
                     /locus_tag="U1396_001149"
     CDS             3946..4284
                     /locus_tag="U1396_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001186237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM5342343.1"
                     /translation="MNQLTEIIIGSATGILAIVAGMIVHEVKKYLIAKGGKRAVEITE
                     ILARNAVNAVEQITKLDQDKHVDKLDMAKRRVTGQLAKYNIYMTDTQLETFIESAVKQ
                     MNDAWKETDK"
     gene            4281..5000
                     /locus_tag="U1396_001150"
     CDS             4281..5000
                     /locus_tag="U1396_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008090834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEM5342344.1"
                     /translation="MTTVNEVVSFAKDLANRGQGVDYDGWYGNQCVDLPNWICGKYFG
                     KALWGNAIDLIKSAKQHGFEVHYMPTSESPRPGAIFVKNYWAGDGINYGHTGLIIGVN
                     GNTVQTIEQNLVGNLSVGGPAQYSSQQISNLVGWFYPPYSDSTAVATQSSSGNLGKVK
                     DEQGTMTVKVSLLNVRDKPGLDGKVVATYTYDEQFNYDSIYIADGYIWVSYVSRSGVR
                     RYVAAGEESNRRNVVPYGTFK"
     gene            5196..5357
                     /locus_tag="U1396_001151"
     CDS             5196..5357
                     /locus_tag="U1396_001151"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342345.1"
                     /translation="MADNQKSNKDTVIRARVDSKTVEQLEYIEKKTNRKKSEVIRDGI
                     QKIYDEIKK"
     gene            5560..5739
                     /locus_tag="U1396_001152"
     CDS             5560..5739
                     /locus_tag="U1396_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342346.1"
                     /translation="MTTQKKIGRPTANPKIKSTRIRLTEEQDQKLTECSEVLKISRTD
                     VLIKGLDTVYQDIKK"
     gene            5863..6093
                     /locus_tag="U1396_001153"
     CDS             5863..6093
                     /locus_tag="U1396_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002984380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342347.1"
                     /translation="MTKSDVLDNYEELLNYTEEVRNSLFILERWLSKTHDNYDATVLR
                     EEYSALLNLATKRLDSLIFEHTTIIENAMKGN"
     gene            6095..6844
                     /locus_tag="U1396_001154"
     CDS             6095..6844
                     /locus_tag="U1396_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011017860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HEM5342348.1"
                     /translation="MELQIFKNEQFGEVQLVELNNEPWFIGKEIAEILGYKNSRDALS
                     KHVDEEDKGVAKRDTLGGSQDQVIINESGLYSLILKSKLPQAKQFKRWVTSEVLPAIR
                     KHGGYLTDNKLEEALLNPDTLISLATQLKEEREARKQLQVANSQLMVDNQIMQPKAQY
                     FDDLVARNLLTSFRDTAKMLKIKEREFINWLLDKKFLYRDKKGKLVPFANKNDGLFEI
                     KETKNESTAWKGTQTLVTPKGRETFNILLRV"
     gene            7019..7234
                     /locus_tag="U1396_001155"
     CDS             7019..7234
                     /locus_tag="U1396_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012679954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Paratox"
                     /protein_id="HEM5342349.1"
                     /translation="MLEYEELKQAVDDGYITGDTVNIVRRDGKIFDYVLPGEEVRPWE
                     VVREEKVVDVMRELKSSPQIRPKSFKK"
     gene            complement(7353..8567)
                     /locus_tag="U1396_001156"
     CDS             complement(7353..8567)
                     /locus_tag="U1396_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEM5342350.1"
                     /translation="MSNKMKQAIQLLFFSNLIGVGAGIITTLFGKILLGIGDLRSEYF
                     TFLIPFLPLAGGVIVFIYQKWGREVQAGMGLVFKAGQGEKAQISPVLIPLIISTTWLS
                     HLVGASVGREGVAVQLGASLSHWLKKHGFTHLPKDMITKIGMAAGFAGLFQTPLAASF
                     FAIEVLIVGQYSWTSLPYCLVAAFTASTTSHLLGLEKFSHTVATTSFYFTDSFKWLFI
                     ALCFGFIGNLFAWFLAQAKSISTRWLPNPYIKIAIMGVGLTVLLFFFHQGHYTGLGTN
                     LIDASLAGEQVFAFDWLLKLLLTCLCLAAGFQGGEVTPLFAIGASSGVVLAGLLGLPT
                     ELVAALGYCAVFGTATNTLLAPLFISYEVFGANILPYAIPVLAIAYLINRKQTIYGQQ
                     LRKFNNAKKPII"
     gene            complement(8557..8835)
                     /locus_tag="U1396_001157"
     CDS             complement(8557..8835)
                     /locus_tag="U1396_001157"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEM5342351.1"
                     /translation="MNLDCIREQINTIDSQLVELLENRMELVDQVTAYKRATGKPVLD
                     TSRENAVLERVGKLVQKDDYRSAIQATFSDIMAQSRTYQSSKLANHEQ"
     gene            complement(8917..9186)
                     /gene="rpsN"
                     /locus_tag="U1396_001158"
     CDS             complement(8917..9186)
                     /gene="rpsN"
                     /locus_tag="U1396_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEM5342352.1"
                     /translation="MAKKSKMARYQRQLELIERYADLRKSLKEKGDYQALRKLPRDSN
                     PNRLKYRDRTDGRPHAYMRKFGVSRITFRELAHLGQLPGVKKASW"
     gene            complement(9326..9787)
                     /locus_tag="U1396_001159"
     CDS             complement(9326..9787)
                     /locus_tag="U1396_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM5342353.1"
                     /translation="MALAKIVYASMTGNTEEIADIVASKLEELGLEVQVHECTTIETE
                     EILDADLIVVASYTYSYGGDGELPDEIVDFYADLADLDLTGKVYGVCGSGDTFYDDFC
                     SAVDDFDVMLGSRGATKGAENVKVDLAAEDEDIVNLEQFATDLVAKLDTMN"
     gene            9882..10826
                     /locus_tag="U1396_001160"
     CDS             9882..10826
                     /locus_tag="U1396_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEM5342354.1"
                     /translation="MTIYSKIIKKIHEYDTIIIHRHKRPDPDAIGSQVGLQKLLQKNF
                     PEKTIKVTGFEEPNLAWMAGMDVVADQDYQGALVIVTDTANTARVDDDRYTQGDFLIK
                     IDHHPNEEPYGDLLWVNTEASSCSEMITELAIQSQLELDGDIARLLYAGIVGDTGRFL
                     YPATSSRTFEIVARLRQEDFDFARMSRQMDTIDFKIAKLTGYVYDNLEVDEHGAARVI
                     LTQDILEKYGVTDADTSFIVGAPGRIGIVQSWGIFVEQTDGNYRVRLRSKYLPINEIA
                     KRHDGGGHPLASGANSYSLSENEQIYQEIQEVVRNASK"
     gene            10813..11841
                     /locus_tag="U1396_001161"
     CDS             10813..11841
                     /locus_tag="U1396_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM5342355.1"
                     /translation="MQASSRSLRLMGTIIETRIWYPQAETILDQVEELLYLYKDRFSA
                     NDLTSELMEVNLNAGVQAVPVADDLYELIKLGKEHSLAQGSFLNITIGPLVQSWRIGF
                     SDAKLPTQEMISEKLQLINPRDIELDDEEQTVYLKKEGMAIDLGALAKGYVADKIVDF
                     LKRIGVEAGLINLGGNVLTFGQAPHNADGYWRIGIQDPQKLRGENALVLKIGEESVVT
                     SGIYERTLTVNGKTYHHILSPETGYPMESQLASLTIVSKQSVDGEIWTTRLFGQEITR
                     IYKMVEETDGIEAVLIGLDGRILVTSGLSEKVLAGEERISDSLGSPSRGGFGARVTSD
                     LASGASVL"
     gene            11921..12202
                     /locus_tag="U1396_001162"
     CDS             11921..12202
                     /locus_tag="U1396_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEM5342356.1"
                     /translation="MARKESMAERNFKMKKDIHPEYRTVVFMDTTTGYKFLSGSTKKS
                     NETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK"
BASE COUNT         3988 a         2385 c         2709 g         3220 t
ORIGIN      
        1 cgaaatggta tcgaagtcga tataaaaaat ataaagatgg aaaaagggct tttagcaaca
       61 gactactctc tatcttacga agacctccgt tcagaaatcg caacctacaa gcgctctgct
      121 gaggaatcca gtgcagagtt atcccgtcaa atccaattgg cagatggcaa ggctgtcgag
      181 gctaagacct acgcccaaca gacggctgaa ggctttaaga ctcgtctgga gagcctcgaa
      241 acctacaagg atggcgaaag tacgcgagct agtcagtatt ttacagctag tcgtgccgaa
      301 acggccaagc agttatctgc cgaacgtgcc gcgattgcta ctaactatgt ggctaagtct
      361 acctacgacg aaaatgtcag aggaacaacg ctaaagctaa acgaaatcaa gtcaacagct
      421 gacactgcta agcaaaatct agcgacctat caaaatacag ttgataggaa actggaagaa
      481 ttgacctcaa gtacacagac acttgacggc aaaattaata cggcgagtgc aaaggttgat
      541 actgtggccg gtcagatacg gactgagatt ggcactgttg aggcgaagat tccgactgag
      601 gcaggcggaa gaaattacat tttgaaatct caagccgaaa tcagtagcac aggtaggtgg
      661 gtaagcaaac catttaattt gtcgagtgac ttactatcta atttgtcgaa aatcaaaact
      721 gtcacaatat cttgtgatgt cgagggtatc aatgtttccg ctttaaattc acgaaaaagg
      781 tatggtttag cttgttcagt tgagataaac ggtgtagtga attattggga agtttggcaa
      841 acgcaagata ccacgaagaa gcgaattagc cagacgttta ctgttcctga agggaaagta
      901 attaccaaat ttcactcgcc gacattatgg atacaggcag ccggagatat aaaagtttcc
      961 aatcccaaaa tcgagtttgg aagggtacct acagatcaca cattggcgcc tgaagatttt
     1021 gccaatgaat tatcatcagt caaaaccaca atcactcaga ctgcatccgg tgtagagcag
     1081 ttatcaacta gcttagctac gactgataac aaagtcacga ctgctgaggc taaaatccga
     1141 cagttaatta gcgatgtgtc aagcaaagta tcgcaaacgg actacaatac gctgaccggc
     1201 cgtgtggatg atgctgaaac agctattact caaaatgcga ccgagattag caagcgattg
     1261 acaaagacgc aagttgataa agcaatcaca gataaagggt ttcagactgc atcgcaagta
     1321 gacactgcaa tcgctggtaa aggttaccag accaagtctg atgttgacaa caacatcaca
     1381 ggtcgtggat acattactag tagtgctctg caaccttatg cgctatctac gaccgtacaa
     1441 aatcttgtga aagagacagc tggtagcttt gagcgtcaga ttacagaaac aagaggtctg
     1501 ataccgacgg aagtcaatca aaatcttttt gatgttgttt ttagtgattt aagagcaact
     1561 ggaggtgcta gctttgtaca atctgatgat ggttggattg aggttacgat taaaaatagg
     1621 tggtctggat tccattggta ttactcagat gatatcaacc cgtcaaaaaa acaatatgtg
     1681 gtcagttatg aagcttattt ggttgatact gttgcagaaa cagcacgact tgaatcagac
     1741 tttggcagtc cagaccagtt gacactcatc aacaaaacac cgaagcgtta tacagttgta
     1801 ttaaatagac ctgctaatat ctataattac atcaattttg tgtgtaattc ctcagaaact
     1861 ggtaaaaaat ttagaattcg aaatattaag cttgaggaag ggattgttgc gactccttac
     1921 attgcgccat tcccaacaac agtattgttt aatgctgtta aagacaccgt agacgctcat
     1981 aagcggctta ttggcaatgg cgatagcata tcgcaagcaa tccaatctgc aaacaaattt
     2041 gagcggtcta tttcaagcgg tggtgacgtt tatcaagcga ttgagacggc taaaggacta
     2101 gtcacagagg tgtctggtac taacggactc aagatacaag tcagtcaatt agctgggtct
     2161 tgggcagtcc aaaacttgac tagtagcggt cagatattaa accaaattaa cttacttgcc
     2221 aatggcacaa acaggattga cggtcgattg acgcacatca caggtcaaac tttaattgat
     2281 aatggcgtca tcatcaacgc aatgattggc aatttagatg cagggaaaat caagacaggc
     2341 acgcttgatg cagcacgcat tcgggctaac tcgattgatg gcagtaagat agtctttgac
     2401 caggcgtttt taaataagat gaccgctaac gaagctttgt ttaagcagct gtttgctcaa
     2461 agcgcattta tcacaagcgt ccaggcagtg gctgtgtcag ctaaacagat tgctggcggt
     2521 attgctaaag cactcaacgg tggtatggat gtcaatttcg acgaaagtaa aatcaacttt
     2581 tacacaaacg tagctgcaat aagacgtatc tatactggac accctactca atttataaaa
     2641 ttcgaaaccg aagggaatta ctcgcgaaca atcatcggga gtaaccgtaa tggaggagaa
     2701 gtttttaatt cggcaacatt tgcagggatt gttgtagaga acacaaacaa tataaacaca
     2761 gaagacaatg tgaggattta tggagataac acgctattaa gacatgcaca aggcgatgtc
     2821 ggttggaata tcaattctgt cactcaacgt atagtcccag ctaacatgaa cgcagagtcc
     2881 gaaatttggt ctaagcactt tgtggctccg gataaaaatt caaagcctgt ccgattggat
     2941 acagcagtgg cagcattatg ggacatttgg aatcacatca tctacaacaa ttttgagttc
     3001 aacgcagcgc ttcgcacaca cataaaagct agacgggaca actggaaatt tgaattaaat
     3061 ttataggagg aatcatgaat caagaacaaa tcactcaagc gctacgcttg actaataacg
     3121 acctcgtgac aaaactgtca gaggagatga cgacgaaaaa cttgctcgct gtgcaactaa
     3181 ctgaggcaca gcagaccatc gctaatctgc gggcagaaat tactgactta actcagcaac
     3241 tggatgaagc tactaaacca gaggaaatca ttgaccaaga agaaggagaa taatcatgac
     3301 agaaactact aacaacacat tgcttaattt ggaagaaaca acacaaccat ttgaccttgc
     3361 gactgcattg cagtatatga aggaaaacgg ggaattcatt cgctgcaaga atgcgacaaa
     3421 tgatttttat atgtaccgtg atgtgcaaaa acgtcctgca attgtgaatg gtcgtcgcaa
     3481 atttgtggat gtggaaacta tctgggcctt taatcagtgg ggcggtaccg ctgcgacaat
     3541 taatattgct gacatgctca acgaagagta ttggatcatg aaatttgatg aaaacggaaa
     3601 tccagattgg acagacccaa cagcaggagc ggaggcgtag cctatgccaa tcgaacacgc
     3661 agaaagaata gcccaaagtc aagttgcttg ggctattttg tttattttat tattcggatt
     3721 cgtcatccgt tatctgatta agacgtcaga caagcgagaa gctaagctca tggatttcca
     3781 tgagcaggcc aaggaagaaa gtaacaagcg ggaggaccgc ttgatgaatc atcttgaaaa
     3841 gactaccgca gaaatgggag ccatggctcg tgaaatcggt ggcttaaaag gtgaagtgtc
     3901 attaatgagt gaccgtattg aaaaaatcga aaaaggagaa taagtatgaa tcaacttaca
     3961 gaaattatta tagggtctgc tactggtata ttagctatcg ttgccggtat gattgtccat
     4021 gaggtcaaaa agtatctgat tgccaagggc ggtaagcgag cggtcgaaat tacagagatt
     4081 ctggcacgga acgccgtcaa cgcagttgag cagattacca aattagacca agataagcac
     4141 gtcgataagc tagatatggc caaacgtcgt gtaacaggtc aacttgctaa atacaacatc
     4201 tatatgacag acacgcagtt agagaccttt atcgaatcag cagtgaagca aatgaatgat
     4261 gcctggaagg agactgacaa atgacaacgg taaatgaagt agttagcttt gccaaagacc
     4321 tagccaatcg aggtcaaggt gtagactatg atggttggta tggtaatcaa tgcgttgacc
     4381 tacctaactg gatttgtgga aaatatttcg gcaaggctct ttggggcaat gccattgatt
     4441 tgataaagtc agccaagcaa cacggctttg aggtgcatta tatgcctacc tctgagagtc
     4501 cgcgtccggg agctattttc gtcaaaaact actgggcagg tgacggtatc aactatgggc
     4561 atactggtct aattatcgga gttaatggca atactgtcca aactattgag cagaacctag
     4621 ttggtaatct gtctgtaggt ggtcctgctc agtattctag tcagcaaatc agcaatcttg
     4681 ttggctggtt ttatccacct tacagcgact ctactgcagt ggcaacacag tcaagcagtg
     4741 gcaatctcgg taaggtcaaa gacgagcagg ggacaatgac cgttaaagta tctctactca
     4801 atgtccgaga caagcctggt ctagacggta aagttgtagc tacttacact tatgacgagc
     4861 agtttaatta tgattcgatc tatattgccg atggatacat ttgggtatcg tatgttagcc
     4921 gtagcggtgt acgtcgctat gtagcagcag gcgaggaatc aaaccgtcgc aatgttgtgc
     4981 cttatggcac gtttaaatag attttcattt ttaaattttt tcgcattttt accatttttg
     5041 cgctttttga gaaatataat taaggacatg atagctatca atcactgtcc tttgaaaatt
     5101 gaataatatt ttgaagtttt ttcaaaaacc tcttgacaat gtagctacat ttatctataa
     5161 ttaaaaatgt agccacataa caaggaggtg agacaatggc tgacaatcaa aaatccaaca
     5221 aggataccgt cattcgtgct agggttgata gtaagaccgt agaacaatta gaatacatag
     5281 aaaaaaagac caacagaaaa aaatctgagg tcattcgtga cggtattcaa aagatttatg
     5341 atgaaatcaa aaaataaggt ataacccgca atcgccaaac cgtaggtcat accttatcgc
     5401 ccgaaagaaa ctctttctga aatcattata tcagaaacga gcttctttgt catacccaaa
     5461 ggagtttttt ggtatggtga aaaaagtttt gaaaatcgct tgacttttgt atccacttaa
     5521 tttataattt attttgtgga tacgaaaggg gtgataaact tgaccacaca aaaaaagatt
     5581 ggtagaccga ctgctaatcc taagataaaa agtactcgta tcagattgac cgaagaacaa
     5641 gatcagaagc tgacagaatg cagtgaggtt ttgaaaatta gtcgaactga cgtgcttatc
     5701 aaaggattgg atacagtcta tcaggatata aaaaaataac gtacgacctg ctcccgccaa
     5761 gaatagggtc atacgttatc gctcaacaca aatagtgtct gtaaatatta taccatacag
     5821 acttctattt gtgtacctcg aaaacagata ggagttttta ttatgactaa aagtgatgta
     5881 ttggataact atgaagagtt attaaactat acagaagaag tgagaaatag cttatttatc
     5941 ttagagagat ggctgtctaa gacgcatgat aattacgatg caacagtgct tcgtgaggag
     6001 tatagcgcac ttcttaatct tgcaacaaaa cggttagata gccttatttt tgaacataca
     6061 acaattatcg aaaatgcaat gaaagggaac taatatggaa ctacaaattt ttaagaatga
     6121 acagtttgga gaagtgcaac tggtggaact caacaacgag ccctggttca ttggtaaaga
     6181 gattgcggag attttggggt ataaaaattc tcgtgatgca ttgagtaagc atgttgacga
     6241 agaagataag ggggtcgcaa aacgcgacac ccttggagga agtcaagacc aagttatcat
     6301 caacgagagc ggtctatact cgcttatctt gaaatctaag ttgccacaag ccaagcagtt
     6361 caaacgttgg gtgacatcag aagtcttgcc agctattcgg aagcatggtg gctatctgac
     6421 agataacaag ctagaggaag cgttgcttaa tccagatacg ctcatatcgt tagcaactca
     6481 actgaaagaa gaaagagaag cacgtaagca gcttcaagta gcgaatagtc aactaatggt
     6541 tgataaccag attatgcaac caaaggccca gtattttgat gacctagttg ccagaaattt
     6601 gctgacaagt ttccgagata cagctaaaat gctaaaaatc aaagagcgtg agttcattaa
     6661 ttggttactg gacaagaagt ttctgtaccg agacaagaaa gggaaacttg taccatttgc
     6721 caacaaaaat gacggactct ttgaaatcaa agaaaccaag aacgaaagta cagcttggaa
     6781 aggtacacag accctcgtaa cacctaaagg acgagaaacc tttaacattt tattgagagt
     6841 ataaatgcag aattccccag cgtttgctgg gcttttttgt tgaccgaatt tcaaaaaaat
     6901 agcgtttttt tgattttcga tagcaaaaca cttgctttta tcacggatat ttttaaaaat
     6961 tgccgatttt tgagattttt cgtaattttt ttcgaacaaa caagtaggag gatttaaaat
     7021 gttagaatac gaagaattaa aacaagcagt agatgacgga tatattacag gcgatacagt
     7081 aaatatcgta cgtcgtgacg gcaagatatt tgattatgtt ttgccaggcg aagaggtcag
     7141 accatgggaa gtagtgagag aagagaaagt agtggatgtg atgagggaat tgaagtcgtc
     7201 gccccaaatc cgccccaaaa gttttaaaaa atgagtatag ataggtcaaa aatataacaa
     7261 aaatagctaa aatcagcgta ttttttaaaa catacaacaa cgtgttttgc tataaaattc
     7321 ctgcagggga gatgaagagt atacgaaaaa gcctagatga taggcttttt tgcattattg
     7381 aatttcctca actgctgtcc ataaatagtc tgttttctgt ttataagata agctatggca
     7441 agtacaggaa tagcataggg caggatatta gcgccgaata cttcataact aatgaagaga
     7501 ggagccagta aggtattggt ggctgttcca aatacggcac aatacccaag ggctgcaaca
     7561 agttcagttg gtagacctag taatcctgct aaaacaaccc cagaacttgc tccaatcgca
     7621 aagagcggag taacttcgcc cccttgaaaa cctgcagcca aacaaagaca ggttagtagg
     7681 agttttagta gccaatcgaa agcaaacacc tgttccccag ctaaactggc atcgatcaaa
     7741 ttggttccta gaccagtata atgaccttga tggaagaaaa atagtagaac agtcagtcca
     7801 actcccatga tagctatttt aatgtaagga tttggaagcc atcgagttga gatgcttttt
     7861 gcttgcgcca gaaaccaagc aaataaattg ccgatgaaac cgaagcaaag ggcaataaat
     7921 agccatttaa aactatctgt aaaatagaat gaggtagtag cgacggtatg cgaaaatttc
     7981 tctaatccca ataaatggga agtagtagaa gccgtgaaag cggcaactag acaatagggg
     8041 agactagtcc aagaatattg gccaacgatt aatacctcaa tggcaaagaa actagcagcc
     8101 aacggtgttt gaaatagccc tgcaaaacct gcggccatac caatctttgt tatcatgtct
     8161 ttgggcaagt gtgtgaaacc atgttttttt aaccaatgtg agagactggc tccaagttgg
     8221 acagctacac cttcgcgacc aacggaagca ccgacaagat gactgagcca agttgtagag
     8281 atgatgagtg gaatgagaac tggagaaatt tgcgctttct ccccttgtcc agctttgaag
     8341 actaagccca tacctgcttg gacttccctt ccccattttt gataaatgaa aacaatcacc
     8401 ccccctgcaa gtggcagaaa ggggattaga aaagtaaaat attcagaccg taggtctcca
     8461 atccctagta gaattttccc aaaaagtgtg gtgattattc ctgcaccgac tccaattaag
     8521 ttggaaaaga aaaggagttg gatggcttgt ttcatcttat tgctcatgat tcgctaactt
     8581 ggaagattga taggttcttg attgggccat aatatcgcta aaggttgctt gaatggcaga
     8641 acggtaatca tccttttgaa ctaattttcc aactctttca aggacagcat tttctcggct
     8701 ggtatccaaa acaggcttac ctgttgctcg tttataggct gtaacttggt cgaccaactc
     8761 cattcgattt tcaagtagtt caaccaattg gctatcaatc gtgttaatct gttcgcggat
     8821 gcaatccaaa ttcatcttat aaacctccgt atattgtttc agttgttttt tagtatagca
     8881 aaaaacaagg cagaatacta gccttgtttg aggaagttac caacttgctt ttttaacccc
     8941 aggaagttga ccaagatggg ctaattcacg gaaggtaatc cgactcacac cgaattttcg
     9001 catataagca tgcggacggc catcggtcct gtcgcggtat ttcagtcgat ttggatttga
     9061 gtcgcgaggc aattttcgaa gtgcttgata gtcacctttt tctttgagac ttttacgtaa
     9121 atccgcatag cgctcgatta actccaactg tctctgatag cgtgccattt ttgatttttt
     9181 agccataaaa ttctcctttt tcaaaaaact taaccagtta attatatatc aaaactatta
     9241 agattgcaag caataggtgt acaatcttaa taaaaggcta aaagaaaaca gactagacct
     9301 attgataagc cagtctgttt gtcagttaat tcattgtatc tagtttagca acaaggtctg
     9361 tcgcgaattg ctcaaggtta acaatatcct catcttcagc ggcaagatct accttaacat
     9421 tttcggcacc cttagttgca ccacgtgaac ccaacatgac atcaaagtca tctactgcac
     9481 tacagaagtc atcatagaag gtatcgccag aaccacaaac accgtagacc ttaccggtca
     9541 aatctaagtc agctaggtca gcatagaaat caacaatttc atctggaagc tcaccgtctc
     9601 caccgtaaga ataggtgtag ctggctacca cgatgaggtc cgcatccaag atttcttcgg
     9661 tttcaatagt cgtacattcg tgaacctgta cttccaaacc taactcttct agcttactgg
     9721 cgacgatgtc agcaatttct tctgtgttac cagtcatact agcgtaaact atttttgcta
     9781 gtgccataat ttcctccaaa ttacatagta atcccattat accacactcc catcattttc
     9841 aaaaggggaa gtttatgcta aaatgatgaa aaggagttgc tatgacaatt tacagtaaaa
     9901 ttattaaaaa aattcacgaa tacgacacga ttattattca ccgacataaa cgaccagatc
     9961 cggatgccat tggtagtcaa gttggcttgc agaaactctt gcagaagaat tttcctgaaa
    10021 aaaccatcaa ggtaaccggt tttgaggaac caaatcttgc ttggatggca ggaatggacg
    10081 tagttgcaga ccaagattat caaggagcct tggttatcgt gacagacact gccaatacgg
    10141 cgcgtgtgga tgacgaccgc tatacccaag gagatttctt gattaaaatc gatcatcacc
    10201 ccaatgaaga gccttatggt gacctgctct gggtcaatac ggaagccagc tcatgcagtg
    10261 aaatgattac ggaactagcc atccaaagcc aactggaact cgatggagat attgctcgtc
    10321 tactctatgc aggaattgtg ggcgatacag gtcgctttct ctatccggca accagctcgc
    10381 gcacctttga gattgttgct cgtctccgcc aagaagattt tgactttgca aggatgtctc
    10441 gccagatgga taccatcgat ttcaagattg ccaagttgac aggttacgtc tacgacaact
    10501 tggaagtgga tgaacatggt gcggcgcgtg ttattttgac acaggacatt ctcgaaaaat
    10561 acggggtgac cgatgcggac acttccttta tcgtaggtgc gccaggacgg attggaatcg
    10621 ttcaatcttg ggggattttt gtggaacaaa ctgacggaaa ttacagagtc cgtttgcgca
    10681 gtaagtatct tccaatcaac gagattgcca aacgccatga tggcggtggc cacccactag
    10741 caagtggtgc taactcttat tcactctccg aaaatgagca aatataccaa gaaatccaag
    10801 aggtagtgag gaatgcaagc aagtagtcgc tcccttcgtc ttatgggaac catcattgaa
    10861 accagaatat ggtatcctca ggcagaaacg attttggatc aggtagaaga gcttctctat
    10921 ctctacaagg atcggttttc tgccaatgac ttgacctctg aattaatgga ggtcaacctc
    10981 aatgcgggtg ttcaggcggt tcctgttgcc gatgacctgt atgaattgat taaattgggc
    11041 aaagaacaca gtctggctca gggatctttt ttgaatatta ccattggtcc ccttgtacaa
    11101 agctggcgga ttggatttag cgacgccaaa cttccaaccc aagaaatgat cagtgaaaaa
    11161 ctccagctca tcaatccaag ggacatcgaa ttagatgatg aggagcagac agtctatttg
    11221 aaaaaagaag gtatggcgat tgatctgggt gctcttgcta aaggatatgt agcagataag
    11281 attgtggact tcttgaaaag aataggtgtg gaggctggac tgattaatct gggtggcaac
    11341 gtcctgacct ttggtcaagc tcctcacaat gcagatggct attggcgaat tggtatacag
    11401 gatcctcaga aactacgtgg tgaaaatgcc ctcgtcctaa aaataggaga agaatcagta
    11461 gtcacctctg gtatttacga aagaaccctt actgtgaatg gaaagaccta tcatcatatt
    11521 ttgagtcctg agaccggcta tccaatggag tcgcagctgg ctagtttgac cattgtgtcc
    11581 aaacaatctg ttgacggtga gatttggacg actcgactgt ttggtcaaga aataactcgg
    11641 atttataaga tggtagaaga aactgatggt atcgaagcgg ttctgattgg gctggatggc
    11701 aggattctag tgacctcagg gctttctgag aaagttcttg ctggtgaaga aagaatttct
    11761 gatagcttgg gcagtccttc aagaggggga tttggcgcca gagtaacttc tgaccttgct
    11821 tcaggtgctt ccgtactata acttgaaaaa atattaaaaa aataggtaaa aagacttgcc
    11881 ataagaacaa acttttggta aacttaaatg gttataatct atggctcgga aagagtccat
    11941 ggcagaaagg aattttaaaa tgaaaaaaga tatccatcca gaatatcgca ctgttgtctt
    12001 catggacaca actactggct acaagttcct tagcggttca actaagaaat ctaacgaaac
    12061 agttgaattc gaaggtgaaa cttacccatt gatccgtgtg gaaatttcat cagactcaca
    12121 cccattctat actggacgtc aaaagttcac tcaagcagat ggacgtgtgg atcgcttcaa
    12181 caaaaaatac ggtctcaaat aaaaaaacag tccttaacgg actgtttttt cacgagcttg
    12241 aaaataaaag agcgagttat ggtccagtgg accatttttt ctttgcctat agaaataaaa
    12301 ga
//
LOCUS       DASGBY010000057        12252 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.057, whole genome shotgun sequence.
ACCESSION   DASGBY010000057 DASGBY010000000
VERSION     DASGBY010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12252
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.057"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            193..894
                     /locus_tag="U1396_001163"
     CDS             193..894
                     /locus_tag="U1396_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM5342357.1"
                     /translation="MGKISKEALKEQIKDGIIISCQALPGEPLYREEGGIMPLLVKAA
                     QEAGAVGIRANSVRDIKEIKEVTTLPIIGIIKRDYPPQEPFITATMREVDELAALDIE
                     VIALDCTKRERYDGLDIVDFINQIKEKYPEQLFMADISTFEEGLTAYEAGIDFIGTTL
                     SGYTSYSRQEEGPDIELVDRLCRAGIDVIAEGKIHYPDQVKIIHDLGVAGIVVGGAIT
                     RPKEIAERFISALHK"
     gene            922..2430
                     /locus_tag="U1396_001164"
     CDS             922..2430
                     /locus_tag="U1396_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5342358.1"
                     /translation="MNFKKFSQLGQAFMLPISILPVAGLLLGIGGALSNSNAVAQFPV
                     LDQAWLQAVFTIMSTAGSAVFANLALIFAIGVAVGLADADKGTAGLSAGVAYLVYTAT
                     ISGFLTLFADKGASIDTGVLGALAIGITVATLHNKYRKIELPAFLGFFGGSRFIPIIS
                     SFAAIAIGSIFYIIWPPIQNLLVDFGKAIAEMGSFGTFLYGFGLRLTGAFGLHHTIYP
                     MFWYTSLGGSEVVAGETIQGAQNIFFAQLADANHTGLFTYGTRFFAGRFATMIFGLPA
                     SCLAMYHAIPKENRKKVGSFYSSSALTSLLTGITEPIEFSFLFVAPWLYVVHAFLDGL
                     SFLVADLLQIRIGNSFSGGLIDYLIFGVFQGNDKTNWIYVIPVGLLWAAVYYLVFKFL
                     VTKFHVLVPGMESSDQASHSEKVLSNGSSLRDNAIAIIDALGGADNIENVTACATRLR
                     VSLRNSGLVDKGVIQSIGATAVLDVKGGIQAIFGGKAILYSQEINQILGLEE"
     gene            complement(2534..3346)
                     /locus_tag="U1396_001165"
     CDS             complement(2534..3346)
                     /locus_tag="U1396_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM5342359.1"
                     /translation="MLQTPKHITAIIESHLDQMTRLEKQIASYFTQLDPSSADLSQEN
                     TIQQLHISPSALTRFAKKCGFSGYREFVFAFQNNQQYLDKHFEKLQRSLTKKVLVDYE
                     EILTATNKLVDEEKLEEIAKLIDSSKRVYFYGIGSSGLVAMEIKSRFMRLGVVCDAIT
                     DENNLIWTTNILDDSCLVIGLSLSGQTEEVMEHLQLAAQKGIPTALLTTKSFPHPTFD
                     QIIPVASVRHLNYGNRISPQIPLLIMLDIIYAYFLAIDKEKKENIFKQTIRE"
     gene            3446..3943
                     /gene="ybeY"
                     /locus_tag="U1396_001166"
     CDS             3446..3943
                     /gene="ybeY"
                     /locus_tag="U1396_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEM5342360.1"
                     /translation="MYIEMIDETGQVSAQMQEQITELLQFAAEKIGKQNKEMAVTFVD
                     NKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVFDEEDLLDNPELAEMMEDFDAYIGEL
                     YISIDKAREQAEDYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
                     GLTRE"
     gene            3924..4325
                     /locus_tag="U1396_001167"
     CDS             3924..4325
                     /locus_tag="U1396_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEM5342361.1"
                     /translation="MDLQENNSKNRWKNRELIASLEFAVTGLLTAFKEERNMKKHLAS
                     AILVVLAGLIFQVSVTEWLFLLLSISLVIAFEIVNSAIENVVDLASDYHFSMLAKNAK
                     DMAAGAVLFVSGFALLTGLIIFVPKIWDFIF"
     gene            4342..5241
                     /gene="era"
                     /locus_tag="U1396_001168"
     CDS             4342..5241
                     /gene="era"
                     /locus_tag="U1396_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEM5342362.1"
                     /translation="MTFKSGFVAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKI
                     MGIYTTEEEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGD
                     DMIMERLKQAKVPVILVVNKIDKVHPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNR
                     LMEILKENLDEGFQYFPADQITDHPERFLVSEMIREKVLHLTREEIPHSVAVVIESMK
                     RDEFTDKVHIRATIMVERDSQKGIIIGKQGAMLKKIGSMARRDIELMLGDKVFLETWV
                     KVKKNWRDKKLDLADFGYNEKEY"
     gene            5929..6756
                     /gene="mutM"
                     /locus_tag="U1396_001169"
     CDS             5929..6756
                     /gene="mutM"
                     /locus_tag="U1396_001169"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEM5342363.1"
                     /translation="MPELPEVETVRRGLNRLVKGKIISKVEVTYAPMIKTGVDAFCQD
                     LIGQEILDVDRRGKYLLIYLTDHVLISHLRMEGKYNFFPDQVPANKHFHAFFTFSDGS
                     TLVYQDVRKFGTMELLGKADVDAYFISRKIGPEPTEEDFDLEEFAKKLAKSRKPIKSH
                     LLDQSLVAGLGNIYVDEVLFKAKVHPAQTSNQLSAEQVADLRQATIEVLQLGIEKGGS
                     TIRTYKNALGMDGTMQDYLQVYGKTGQACPRCQTEIVKIQLGGRGTHFCPKCQVKHG"
     gene            6749..7351
                     /locus_tag="U1396_001170"
     CDS             6749..7351
                     /locus_tag="U1396_001170"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEM5342364.1"
                     /translation="MAKIIGLTGGIASGKSMVTAFLREQGYSVIDADAVVHELQAKGG
                     KLYQVLVKEFGQDILSDDGNLDRAKLGQAVFADSKLRARLSDLQDQIIRQELLDRRDA
                     LKQTEDVIFMDIPLLYEADYSGEVNEVWLVYVDRAQQLERLMKRNGLAVQDAENRMAA
                     QLSLEEKRSQAQVVIDNSGAVEATLVQVARLLEELKDGRR"
     gene            7338..8543
                     /locus_tag="U1396_001171"
     CDS             7338..8543
                     /locus_tag="U1396_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM5342365.1"
                     /translation="MDDGSSYWKQNLKVAWLGNFLTGTSFTLVMPFISVFVEELGVGP
                     GQVEYYAGLAVSVNALAAALMAPIWGSLADRYGRKPMMVRAAFAMIFTMGGMAFVPNV
                     FWLLVLRVLNGVFTGYIPNATALIASQVPKDKTGYALGTLSTGAVAGNLIGPTLGGIL
                     AEMFGVHMVFLLVGLLYAIVVLLTVFYIREDFVPIKKGEEMSVKEVFEQVKDRQMLVG
                     LFVTSMIIIAAAQAVVPILTLYVRHLGQTDNLLFVAGFIISLPGMASLVTSGYLGKIG
                     DHIGNHRLLLIALTYSLLINVFCVFAENPFQLGLLRFMYGFGTGALLPSVNSLLTKLT
                     PKEGISRIFSYNQLFNNLGSVVGPMMGSAVAAHMGYDWVFYLSSGLVLFNLIWSLTNF
                     RNYLKVRDV"
     gene            8543..8692
                     /gene="rpmG"
                     /locus_tag="U1396_001172"
     CDS             8543..8692
                     /gene="rpmG"
                     /locus_tag="U1396_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5342366.1"
                     /translation="MRVKINLQCSECGSKNYLTSKNAKTHPDKIEVLKYCPKERKVTL
                     HLETK"
     gene            8739..8972
                     /gene="secG"
                     /locus_tag="U1396_001173"
     CDS             8739..8972
                     /gene="secG"
                     /locus_tag="U1396_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEM5342367.1"
                     /translation="MYQALLAILLILSVILIVVIFIQPAKNQSSNVFDSSSGALFERT
                     KARGFEAVMQRITAILVFLWMLDALALVIISSK"
     gene            9403..11772
                     /gene="rnr"
                     /locus_tag="U1396_001174"
     CDS             9403..11772
                     /gene="rnr"
                     /locus_tag="U1396_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEM5342368.1"
                     /translation="MKNDIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEG
                     SRQLVFDNAGRITLPAPKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNF
                     AIEGDRVEIAIKKVADRLKGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSK
                     NQKIAQKIYIKKSPLVLTGTEILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIAVLE
                     VLESMDIVSEFPDEVLAEANRVPESPSEQDFAGRLDLRDEIIFTIDGADAKDLDDAVH
                     IKQLKNGNLELGVHIADVSYYVTEGSALDQEAIKRGTSVYVTDRVVPMLPERLSNGIC
                     SLNPNVDRLTQSAIMEIDRKGKVVKHWIGQTVIKTNFRMTYSDVNDMIAGNQEKLDKY
                     KTIVPSVELMVKLHETLETMRYKRGALNFDTAEAKIIVNKDGLPVDIQLRQRGIAERM
                     IESFMLVANECVAEHFAKLDLPFIYRIHEEPKSDKLQKFIDYATSFGLTVYGTASSIS
                     QDALQDLMERVKDEPYADVLNMMLLRSMQQARYSEHNHGHYGLGAEFYTHFTSPIRRY
                     PDLLVHRMVRDYGHNPAEKAEHFEQVIPELAKSSSSLERRAIEAEREVEAMKKAEFMQ
                     EFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHITNLNEYYQFHERTLTLQGEKSGRVF
                     RVGQPIRIKLTRADKMTGEIDFAHVPSELDIVEKALKAKRRTASHSNRDRDDRSGRGR
                     GKHHKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEVAKKNKKKRR"
     gene            11775..12242
                     /gene="smpB"
                     /locus_tag="U1396_001175"
     CDS             11775..12242
                     /gene="smpB"
                     /locus_tag="U1396_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEM5342369.1"
                     /translation="MAKGEGNVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRI
                     NLKDGFAQIKQGEAWLVNVHIAPYDEGNIWNQEPTRTRKLLLRKKQIESLGNEVKGTG
                     MTLVPLKVYIKDGFAKVLIGLAKGKHDYDKRESIKRREQDRDIKRTMKAINSR"
BASE COUNT         3402 a         2295 c         3052 g         3503 t
ORIGIN      
        1 agatggcctt tgttttttaa aactagtttt agaagaggta taaaatgttg aaactagttt
       61 caaaagaaga ctattttctt tcaaaataga aattagattt taaatgagga actgggattg
      121 aaaaaaagtt aatgtgctat ataataatat tgtaagcgct atccagaatc cgggaataga
      181 aaggaaaaat taatgggcaa gatcagtaag gaagctctaa aagaacagat aaaagatgga
      241 attatcattt cctgtcaggc tttgccaggc gaacctctgt atagggaaga aggcggtatt
      301 atgcctttac tagtcaaggc tgcccaagaa gcaggggctg tcggtattcg ggccaatagt
      361 gtacgagata ttaaggagat aaaagaagta actactttac caattatcgg aattatcaag
      421 cgagactatc ctccacaaga gccctttatt acggctacga tgcgagaagt agacgagtta
      481 gcagctctag atattgaagt cattgctctt gattgtacca agcgtgagcg ttatgatgga
      541 ctcgatattg ttgatttcat taatcaaatc aaggaaaaat accccgaaca actttttatg
      601 gcagatattt caacctttga ggaaggatta actgcttatg aagcaggcat cgatttcatt
      661 gggacaacac tttcggggta tacatcctat agtaggcagg aggagggacc agatattgaa
      721 ttggttgacc gcttgtgccg agcaggtatc gatgtgatag cggaaggaaa aatacactat
      781 cctgaccaag taaaaattat tcatgattta ggtgtggcag gaattgttgt aggcggtgca
      841 atcacacgtc caaaggaaat cgcagagcgg tttattagtg ctttacataa ataataaata
      901 ggttatagaa aggaatggag tatgaatttt aagaagtttt ctcagctagg gcaggccttt
      961 atgctgccaa tctcaatttt gcctgttgct ggtctcttac tgggaattgg aggcgcctta
     1021 tcaaatagta atgctgtagc acaattccct gtattggatc aagcgtggtt gcaagctgta
     1081 ttcactatca tgagtacggc aggtagtgcg gtatttgcga atttagcatt gatttttgca
     1141 attggtgttg ctgtaggttt ggcagatgct gataagggga ctgctggcct atctgctggg
     1201 gttgcatact tggtttatac ggctactatt agtggatttt taactctttt tgcagataag
     1261 ggagcaagca ttgatactgg agttttgggc gctttagcga ttggtatcac tgttgcaact
     1321 ttacacaata aatatcgaaa aattgaatta ccagcctttc ttggtttctt cgggggctct
     1381 cgctttattc caattatttc atcatttgca gcaattgcga ttggctccat tttttatata
     1441 atttggccac cgattcagaa tttgttagtt gattttggta aggcaatagc agagatggga
     1501 agttttggaa ctttcttata tggttttgga ttacgtttga caggtgcatt tggcttgcac
     1561 cataccatct atccaatgtt ttggtatact tcattaggcg gaagtgaagt ggtagcaggt
     1621 gagacaatcc aaggtgcgca aaatattttc tttgctcaat tagcagatgc gaatcacaca
     1681 ggcttattta cttatggaac tcgatttttt gctggtcgat ttgcaacgat gatttttggt
     1741 ctaccagcat cttgtttggc tatgtatcac gcaattccta aggaaaatcg taagaaggtt
     1801 ggcagttttt attcaagtag tgcattaact tccctattaa caggaattac cgagccaatc
     1861 gagttttctt tcttgtttgt tgctccatgg ctatatgttg ttcacgcatt tttagatgga
     1921 ctatcattct tagtcgcaga tctcctgcaa attcgtattg ggaactcatt ttctggtggg
     1981 cttattgatt acttgatttt tggtgttttc caaggaaatg acaaaaccaa ttggatttac
     2041 gtgattcctg ttggcttgct ttgggcagca gtttattatc tagttttcaa atttttagta
     2101 accaaatttc acgtgctagt tcctggtatg gaaagtagtg accaagcatc acattctgaa
     2161 aaagttttat caaacggttc tagtcttcgt gataatgcaa ttgctatcat cgatgctctt
     2221 ggtggtgcag ataatattga gaatgtaact gcctgtgcaa ctcgattaag agtatcgctc
     2281 agaaatagtg gtcttgtgga taagggagtt attcagtcta taggtgcaac ggctgttttg
     2341 gatgtaaaag gaggaataca ggctattttc ggaggtaagg ctattctgta tagccaagaa
     2401 atcaatcaaa ttcttgggct tgaagaatag agttatattt aagcgaatta aaagcattca
     2461 aactgtacct atcgggtatt tttgaatgct ttttgtttta ttaagattgt tgtgaaatag
     2521 aaagacggat gaattattct ctaatggttt gcttgaaaat attctctttt ttctccttgt
     2581 caatagctaa aaaataggcg tagataatat ctagcatgat gagcaggggg atttggggtg
     2641 agatacgatt gccgtaatta aggtggcgga cagaggcgac tggaatgatt tggtcaaaag
     2701 tcggatgggg aaaactctta gttgttaaca gggcggtagg aatccccttt tgagcagcca
     2761 gctggagatg ttccatgacc tcttctgtct gaccagacag agaaagaccg ataaccaggc
     2821 aactatcatc cagaatattg gtagtccaga tgagattgtt ttcatcagta attgcatcac
     2881 agactacacc cagtcgcata aagcgggatt tgatttccat tgcaaccaaa ccagaactgc
     2941 cgattccgta aaaatagaca cgcttgctac tgtcaatcag tttggcaatt tcttccaatt
     3001 tttcctcatc taccagttta ttggtagcag ttaggatttc ctcatagtct accaagactt
     3061 tttttgttag gctccgctgt aatttttcaa aatgtttatc caagtattgt tggttattct
     3121 gaaaggcaaa gacaaattct cgataaccgg aaaatccaca ttttttggca aaacgggtaa
     3181 gagcagatgg agaaatgtgg agttgctgta tagtgttttc ttggctaaga tcggcgctag
     3241 atgggtctaa ctgagtaaaa taactggcaa tctgcttttc aagtctagtc atctgatcca
     3301 gatgagactc aatgatggca gtgatgtgtt tcggtgtttg taacattttc cattcctctg
     3361 atagcttctg aggacattat accactaaaa ccccctcatt gataggtttt atgatataat
     3421 ggaaacgtaa aaggaatgta agattatgta tattgaaatg attgatgaaa cagggcaggt
     3481 ttctgctcaa atgcaggagc agattacgga attgctccag tttgctgccg aaaaaattgg
     3541 caagcagaat aaggaaatgg ctgtgacctt tgtggacaat aagcgtgtcc atgaggttaa
     3601 cttggagtat cgaggaattg accgtccgac agatgttgtc agcctagaat ataagccaga
     3661 gtcggagatt gtttttgatg aggaagactt actggacaat cctgaattgg ctgaaatgat
     3721 ggaagatttc gatgcctata ttggtgaatt gtatatttct atcgataagg cgcgtgagca
     3781 agctgaagat tatggtcata gctacgagcg cgaaatgggc tttttagctg tacacggttt
     3841 tctgcatatc aatggctatg atcattatac gccagaagaa gaagcagaaa tgtttggttt
     3901 acaagaagaa attttgacgg cctatggact tacaagagaa taattcaaaa aatcgctgga
     3961 aaaaccgaga gctgattgcc agtctagaat ttgcagtaac gggtttgttg acggctttca
     4021 aggaagaacg caatatgaag aagcaccttg cttctgctat tcttgtggtg cttgcgggac
     4081 ttattttcca agtatctgtg acagagtggc tcttcctctt gctcagtatt agtctggtta
     4141 tcgcttttga aattgtgaat tcggctattg aaaatgtggt ggatttggct tcagactatc
     4201 atttttctat gttggcgaaa aatgccaagg acatggcagc aggggcagtc ttgtttgtgt
     4261 caggatttgc cttgctaaca ggattgatta tctttgtgcc gaaaatttgg gactttattt
     4321 tttagaatat aaggagaata catgacattt aagtcaggtt ttgtggcgat tttaggtcgt
     4381 ccaaacgttg ggaaatcaac ctttctcaac tatgtaatgg ggcaaaaaat tgccatcatg
     4441 agcgacaagg ctcaaacaac ccgtaacaag attatgggca tttatacgac agaagaagaa
     4501 cagattgtct tcattgacac accgggaatt cacaagccta agacagcttt gggcgatttt
     4561 atggtggagt ctgcttatag cacccttcgt gaagtggaca cggtcctctt tatggtgcca
     4621 gccgatgaaa aacgaggcaa gggtgatgac atgattatgg aacggctcaa gcaggccaag
     4681 gttccagtta ttctcgttgt taacaagata gacaaggttc atccagacca gcttttggaa
     4741 cagattgatg atttccgtca acagatggac ttcaaggaaa ttgtgccaat ttctgctacc
     4801 caagggaaca atgtcaaccg acttatggaa attctcaagg aaaacctgga cgaaggcttc
     4861 cagtatttcc cagcggacca aatcactgac cacccagaac gtttcttggt atctgagatg
     4921 attcgggaga aggttctaca cctgactcgt gaggaaattc cgcactctgt ggccgttgtc
     4981 atcgagtcca tgaaacgtga tgaatttacc gacaaggtcc acattcgtgc tacgattatg
     5041 gtagagcgtg atagccagaa aggcatcatc atcggtaagc aaggagccat gctcaagaaa
     5101 atcggctcca tggctcgtcg tgatattgaa ctcatgctag gtgacaaggt cttcctcgaa
     5161 acctgggtca aggtcaagaa aaactggcga gacaaaaaac tcgacctcgc cgactttggt
     5221 tataatgaga aagagtatta aaaacgtccg ggggagtgaa acagtctagg aatagactgt
     5281 ttcagctggt cacctagaaa tgtgaaagtg accatttgaa aacccgagca tagaaattgg
     5341 aaggcgagat agcctgggga taggctgtct aagtcaatca cttagaaata gttagcagaa
     5401 aagccgaaag gcttttactg cgttatggag aaatcttttt agtaaacaag aaaggaaagt
     5461 cgattaggtg ttgtcttgaa cacgcctacg actctttgaa aaaagataac cgtgacctag
     5521 gtgccgaagc accatcggtc aggtttctat ttgctttgta attttgttag aaaggacgag
     5581 tgtttgcgta cttgaacccg agctaaaagc tcggaaaata gatagagctc cttatgtgca
     5641 agtcacatag cgtcgctctc ctaattttac tatatttaga aaggaaagcc gattaggtgt
     5701 tgtaattgaa cacgcctagg cctccttgaa aatcacaacc gtgacctagg tgccgaagca
     5761 ccgtcggtca ggtttctatt tgctttgtaa ttttgttaga aaggacgagt gtttgcgtac
     5821 ttgaacccga gctaaaagct cggaaaatag atagagctcc ttgtgtgcaa gtcacacagc
     5881 gtcgctctcc taattttcag tcgcttttta cgctcttggt atcgtacatt gcccgaattg
     5941 cctgaggttg agacggttcg tcgtggtttg aatcgtttgg tcaagggaaa aattatttcc
     6001 aaggtggagg tgacctatgc tcccatgatt aagacaggtg tggatgcctt ctgtcaggac
     6061 ttgattggtc aggagatttt agatgtggac cgtcgtggca agtatctctt gatttacctg
     6121 acagaccatg tcctcatttc tcatttgcgg atggaaggta agtacaattt ctttcctgac
     6181 caggtgcctg ccaacaaaca tttccatgcc ttttttactt tttcagatgg ctcgaccttg
     6241 gtctatcaag atgtccgcaa gtttggcaca atggaactgc tgggcaaggc agatgtggat
     6301 gcctatttta tcagtcgaaa aattggtcct gagccgacgg aggaagattt tgacttagaa
     6361 gaatttgcca aaaagttagc taagtcgaga aaacccatta agtcgcatct tttggaccag
     6421 tctttggtgg ctggtttggg caatatttat gtcgatgagg tcttgttcaa ggccaaagtt
     6481 catcctgcac aaacgagtaa tcagctatca gcagagcagg tggcagatct ccgccaagct
     6541 accatagaag ttctacaact gggaattgaa aaaggtggtt caaccattcg gacttacaaa
     6601 aatgccttgg gcatggatgg gactatgcag gattatttac aagtttacgg aaagacaggg
     6661 caggcctgtc cccgttgcca gacagagatt gtcaaaatcc agctgggcgg acgggggaca
     6721 catttctgtc ccaagtgtca ggtgaaacat ggctaaaatt atcggtttaa caggcggaat
     6781 cgcctctgga aaatcaatgg tcacagcttt tttgcgagaa cagggctatt cagtcatcga
     6841 tgcggatgcg gttgttcacg aattacaggc caaaggtggc aagctctatc aggttttggt
     6901 gaaagagttt ggtcaagaca tcttatcaga tgatggaaat ttggataggg ctaagctggg
     6961 ccaggctgtt tttgcggata gcaagttgcg ggctcgcctg tctgacctgc aggaccaaat
     7021 tatcaggcag gagctgttag acagaaggga tgccctcaag cagacggagg atgtgatttt
     7081 tatggatatt cctttgctct acgaggcgga ttatagcggg gaagtaaatg aagtctggct
     7141 agtttatgtc gatagagcgc agcagttgga acggcttatg aaacgcaatg gcttagctgt
     7201 tcaagatgca gaaaatcgta tggctgctca gctttcttta gaggaaaaac ggtcgcaagc
     7261 ccaggtggtg attgacaata gcggagcggt tgaggcgacc ttagtgcagg ttgctcggct
     7321 tttggaggaa ttaaaggatg gacgacggta gtagttattg gaagcagaat ttgaaggtgg
     7381 cttggttggg aaatttccta acagggacga gttttacctt ggttatgcct tttatctcgg
     7441 tttttgtgga agagttggga gtgggccctg gacaggtaga atattatgcg gggcttgcgg
     7501 tatctgttaa tgcccttgca gcagccttga tggcgcctat ttgggggagt ttggctgacc
     7561 gctatgggcg caagcctatg atggttcggg cggcttttgc tatgatcttt accatgggtg
     7621 gaatggcttt tgttcccaat gttttctggc ttcttgttct tcgtgtactt aacggtgtct
     7681 ttacgggtta tattccaaat gcgacagctc tgattgccag tcaggttcca aaggataaga
     7741 cggggtatgc tctgggtacc ttatcaacag gtgcggtagc gggtaatttg attggtccga
     7801 ccctaggtgg tatcttagca gagatgtttg gcgtacatat ggtatttttg ctggtgggac
     7861 ttctttatgc tatcgttgtg ttactgaccg ttttctatat tcgagaggat tttgttccaa
     7921 tcaaaaaagg cgaagaaatg tcggttaaag aggtatttga gcaggtgaaa gatcggcaga
     7981 tgctggttgg gctttttgtg acatctatga ttattattgc agctgctcag gccgtcgttc
     8041 ctatattgac cctctatgtg cggcatttgg gacagacaga taatctgtta tttgttgctg
     8101 gttttatcat ttccttgcct ggtatggcat cgctagtgac atcaggttat ttagggaaaa
     8161 ttggtgatca cattggtaat catcgacttc tattaattgc tttgacttac agtctgttga
     8221 ttaatgtttt ctgtgttttt gcagaaaatc ctttccagct tggtttgttg cgattcatgt
     8281 atggttttgg gacaggagca ttgttgcctt cggtcaattc tcttttgacc aagttgaccc
     8341 ccaaagaagg gatttcaagg atattttcct acaaccaact ctttaataat ctaggttctg
     8401 ttgttggtcc catgatgggg tctgcggtag ctgctcacat gggttatgac tgggttttct
     8461 atctgtcgag cggacttgtc ctctttaacc ttatctggtc tttgaccaat tttagaaact
     8521 atttgaaagt aagggatgtt tagtgagagt taaaatcaat ttacaatgtt cagaatgtgg
     8581 tagtaagaac tacttgacta gcaaaaacgc caagactcat ccagataaga ttgaagtcct
     8641 taaatactgc ccaaaagaga gaaaagtaac cctccacctt gaaactaagt aggttttatg
     8701 gtataatgtc ataagttatt gtagaaagtg aaaaaaatat gtatcaagca ttattagcaa
     8761 ttctgttgat tttatctgtt attttgattg tagtgatttt tattcaaccg gctaaaaacc
     8821 agtctagcaa cgtctttgac tcttctagtg gagccttatt tgaacgtaca aaggcccgtg
     8881 gttttgaagc ggtgatgcaa cgcattacag ctattcttgt ttttctttgg atgctggatg
     8941 cgctggcgct tgttatcatt tcaagtaagt agataaatca gactgggact tgttcttggt
     9001 ctattttttt gggagtgggc cagaactcga caagtataaa gagttcgtct gcctaccccg
     9061 cacaagttga ataggtatgg ttcggagcgt tattcgcgaa ctattgagat ttgctttgca
     9121 aatcctatct cccacctcca acaatcattt gattgttgga gcaatcaacc actgcgtctg
     9181 gatataacgc aaaatacagt cttttagttt gcttttagta ctaggcaacg agctgcagac
     9241 tgtactgaag tacgacaaag cgagttcaaa taatgatgaa attatttgaa gttggaaata
     9301 gggaaacgga gtttcctcgt acgtcgcagt aataaaagat aaactaaagg actgaaagag
     9361 aaatagtgct aggtttttat cctgcactct ggtaaataca acatgaaaaa cgatattatt
     9421 aactatatta aagaagttgg tcctgtgacc atggaccagc tggcagatca gtttggagcc
     9481 agttctgcta agagctttac agacttggtc aagctggttt ctagcatgga aggcagtcgt
     9541 caacttgtct ttgacaatgc tgggcggatt actcttcctg ctccaaaaat ctccaagaac
     9601 aaggtgacct tacagggtat tttccgtgcc cacaagtcgg gttttggctt tgtgaccatt
     9661 gacgaggagg aagatgatct ctttgtcagc cgtgacgatg ttaactttgc tatcgaaggt
     9721 gacagagttg aaattgcaat caaaaaggtt gcagatcgtc tcaagggaac tgccgcggaa
     9781 gcggaagtca ttgatatttt ggaacatagc ctgaaaacag cggtgggctt gattgtcttt
     9841 gacgaagata agccagaata tgcaggctac atcaagtcta aaaaccagaa aattgctcag
     9901 aagatttaca tcaagaagtc acctctggta ttgaccggaa cggaaatcct aaaagttgat
     9961 atcgaagctt atccaaacaa gaaacgggac cactttgttg cgaccattcg ggacgtggtg
    10021 ggccacaagg acgatgtggg catcgctgtc ttggaagttt tggagtccat ggatatcgtg
    10081 tcggagtttc cagatgaagt cttggcagag gccaatcggg taccagaaag tccgtctgaa
    10141 caggactttg caggacgttt ggacctgcga gatgaaatta tcttcaccat agacggtgcg
    10201 gatgccaagg acttggacga tgcggtccat atcaagcagc ttaagaacgg caatctggag
    10261 ctaggtgtcc atatcgctga tgtcagctac tatgtgacgg aaggctctgc cttggatcaa
    10321 gaggccatca agcgtggaac gtctgtctat gtgaccgacc gtgtggtgcc aatgttgcca
    10381 gaacgtttgt caaacggcat ctgctctctt aatccaaacg tggaccgtct aacccagtcg
    10441 gctattatgg aaattgaccg caagggcaag gttgtcaagc actggattgg ccaaacggtc
    10501 atcaaaacca acttccgcat gacctattct gatgtcaatg acatgattgc gggaaatcag
    10561 gaaaagctgg acaaatacaa gacaatcgtg ccaagtgttg agctcatggt caaactccat
    10621 gaaaccctgg aaaccatgcg ctacaagcgt ggggctctca actttgatac agctgaagct
    10681 aaaatcatcg tcaacaagga tggtctgcca gtcgatatcc agctacgtca gcgaggcatt
    10741 gctgagcgga tgattgagtc cttcatgctg gttgccaatg agtgcgttgc tgagcatttt
    10801 gccaaactgg acctgccttt catctatcgg atccacgagg agcctaagtc agacaagctg
    10861 caaaagttca tcgactatgc gaccagcttt ggtctgacgg tctatggtac ggccagctct
    10921 atcagccagg acgcccttca ggacctcatg gagcgggtca aggatgaacc ctatgcggat
    10981 gtcctcaaca tgatgttgct gcgttctatg cagcaggcac gctactcgga gcacaaccac
    11041 ggccattacg gtctgggtgc cgagttctac acccacttta ccagccctat ccgtcgttat
    11101 cccgacttgc tggttcaccg catggtgcgg gactatggtc ataatcctgc ggaaaaagca
    11161 gagcattttg agcaggttat acctgagctt gccaagtctt cgtccagttt agaacgccgt
    11221 gccattgagg cagagcggga agtcgaagcc atgaagaagg cagagttcat gcaagaattt
    11281 gttgggcaag agtttgatgg tgtcgtatct agcgtagtca agtttggtct ttttgtagag
    11341 ttaccaaaca cggttgaagg cctgattcat atcaccaacc tcaacgaata ctatcagttc
    11401 cacgagcgaa ctctgacctt gcagggtgag aaatcaggtc gggtcttccg tgtcggtcag
    11461 ccaattcgta tcaagctaac gcgggcggac aagatgacag gggaaatcga ttttgcccac
    11521 gtgccgtccg agctggatat tgtcgaaaaa gctctgaaag ccaaacggag aactgctagt
    11581 cactctaacc gtgaccgtga tgatcggtca gggcgaggac ggggcaagca ccacaaacaa
    11641 gaagctgctg gtcgcgacag cggacgtcac aagtctggaa aagaccacaa gtcaaaaagt
    11701 ggcaaaaaag acaagaaaaa gaaaccattt tacaaagaag tggctaaaaa gaacaagaag
    11761 aaaaggagat aggcatggcc aagggtgagg gcaatgtgat tgcgcaaaat aaaaaagccc
    11821 gccacgacta taccattgtc gatacagtgg aggcggggat ggtcctgacg gggacggaga
    11881 ttaagtctat tcgtgcgggg cggatcaacc ttaaggacgg ctttgcccag atcaagcagg
    11941 gcgaggcttg gttggtcaat gtccatatcg ctccctacga tgagggcaat atctggaatc
    12001 aggagccaac gcggacccgc aagctcctct tgcggaagaa gcagattgag tctctgggca
    12061 atgaggtcaa gggaacaggg atgactctgg tgcccctcaa ggtctatatc aaggatggct
    12121 ttgccaaggt tttgattggg cttgccaaag ggaagcacga ctacgacaag cgggagtcaa
    12181 ttaaacgccg tgagcaagac cgtgatatca aacggaccat gaaggctatc aatagtcgat
    12241 agaggctggg ag
//
LOCUS       DASGBY010000058        12186 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.058, whole genome shotgun sequence.
ACCESSION   DASGBY010000058 DASGBY010000000
VERSION     DASGBY010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12186
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.058"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            16..1323
                     /locus_tag="U1396_001176"
     CDS             16..1323
                     /locus_tag="U1396_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HEM5342370.1"
                     /translation="MFKKKATQIVSETSIKKSRKFLNRKTAGITGGILLTTFIGSQLM
                     TAELPKKDDLYGQQYVTVVKHLQEAGFKNIQGVELSDLEFGKIGESNLVELVSVDGED
                     WKEGRALKNIPITISYHVPKKDAVEFNLPASKNLADVEKELKDSGFKQVELTPVLLVE
                     EGNADKKDKIDRLQIGNHTYQSNHFYSTSLPVTLTYFDVSKDNIKLPENLAEAKTKPE
                     LEKQLKTAGFTDIKWTAVADKDKAKHEKIQKINLGGAEIQLPTKQEIISKKSTPIVIT
                     YYDFSSFAELPSSISTKTATDTKKLFTDGGFSQVSEVATETNEIAKNGQIIAVEIDGK
                     SFNEMNDTVIKKDSKVIIKYWNAEKAIAEKARKEEEERLAAEAQKVAEAQSQVQQFAA
                     TPSQNTYYPNCKAVRQAGAAPIYRGEPGYGSHLDRDGDGVGCE"
     gene            1385..1609
                     /locus_tag="U1396_001177"
     CDS             1385..1609
                     /locus_tag="U1396_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342371.1"
                     /translation="MAYKYRMILSFLLAGLCLYLVATVFAKSIWEGPLFLAFSFYSLI
                     YGCVMLYKWKPTAAKIIFQCIGEFLSLPWS"
     gene            1708..2289
                     /locus_tag="U1396_001178"
     CDS             1708..2289
                     /locus_tag="U1396_001178"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEM5342372.1"
                     /translation="MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRD
                     AFGVVSSRIGMRRDAVAIDDDMDIFGFIEKMEPRPYCVLIDEAQFLRRHHVYALARVV
                     DELDVPVMAFGLKNDFRNELFEGSQHLLLLADKLDEIKTICQYCSKKATMVLRTQDGK
                     PTYEGEQIQIGGNETYIPVCRKHYFSPEIKELP"
     gene            2570..3649
                     /gene="prfA"
                     /locus_tag="U1396_001179"
     CDS             2570..3649
                     /gene="prfA"
                     /locus_tag="U1396_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEM5342373.1"
                     /translation="MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEAATR
                     DTVTAYREYKTVLQNMVDAEEMIKESSGDADLEEMAKEELKQAKADKEAYEEKLKILL
                     LPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGG
                     IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDI
                     DPKDLRVDIYHASGAGGQNVNKVATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIR
                     ARVADHFAQIAQDEQDAERKSTIGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTIL
                     SGKMDEVVDALVLYDQTQKLEELNK"
     gene            3649..4482
                     /gene="prmC"
                     /locus_tag="U1396_001180"
     CDS             3649..4482
                     /gene="prmC"
                     /locus_tag="U1396_001180"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEM5342374.1"
                     /translation="MNYAQLFAAYEEQLVAIGEEAESLSFTFRGLKGLNFTEFLLLLR
                     QEVTPTDKEEIDAIFQQLSQHRPAQYIIGKADFHGLEFAVDERVLIPRPETEELVNLI
                     LQENSGAGLRILDIGTGSGAIAISLAKARSDWEVVAVDISKDALAVAQENARTNQVSV
                     HFLESDVFQAVTGQFDLIVSNPPYISPDDTDEVGLNVLASEPHLALFAEEDGMAIYRQ
                     IAEQAGAFLKEKGKLYFEIGYKQGQDLTDLLALHFPKKRIRVLKDQFGQDRKVIADDN
                     G"
     gene            4469..5077
                     /locus_tag="U1396_001181"
     CDS             4469..5077
                     /locus_tag="U1396_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEM5342375.1"
                     /translation="MTMDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQ
                     RPRDKAMNLNVSNLNDIYFFSQNTPFFLEKLYNRFMPGPLTIILKANENVPFWVNSGL
                     DTVGFRLPNHEQTLRLISETGPLIGPSANISGNESGKKFSDIQAQFSVDLPGIEDDQA
                     LTGIDSTILDLSGQKARILRQGAISREEIQKAIPEIEFEVVL"
     gene            5074..5505
                     /locus_tag="U1396_001182"
     CDS             5074..5505
                     /locus_tag="U1396_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342376.1"
                     /translation="MIRPIEKGDLVVIREINAQSLGYDCSLEQTERQFFRCTSTLGHI
                     LLVYIDDISGAVQGYIHAQVYESLYSDTGLNILGLAVLPGHQVQGIGASLLKAVEQIA
                     QKEGYHFIRLNSAESRLQAHLFYEKNGYHSDKMQKRFIKHI"
     gene            5529..6788
                     /locus_tag="U1396_001183"
     CDS             5529..6788
                     /locus_tag="U1396_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEM5342377.1"
                     /translation="MIFDKVNYKEFDKEVWEAIQAEEKRQQNNIELIASENVVSKAVM
                     AAQGSILTNKYAEGYPGRRYYGGTECVDVVESLAIERAKEIFGAKFANVQPHSGSQAN
                     CAAYMALIEPGDTVMGMDLAAGGHLTHGASVSFSGQTYNFVAYNVDEETGLLDYDAIL
                     KQAKEVQPKLIVAGASAYARTIDFAKFREIADAVGAKLMVDMAHIAGLVAAGLHPNPV
                     PHAHITTTTTHKTLRGPRGGLILTNDEELIKKINSAIFPGIQGGPLEHVIAAKAVSFK
                     EVLDPDFKDYAQKVIENSKAMAEVFLANPNFKVITGGTDNHLFLVDVTKVVENGKVAQ
                     HLLDEVNITLNKNSIPYEKLSPFKTSGIRIGSAAITARGFGVEEARKVAQLTIKALEN
                     AENEKALEEVRQEVRALTDQFPLYEGL"
     gene            6788..7762
                     /locus_tag="U1396_001184"
     CDS             6788..7762
                     /locus_tag="U1396_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HEM5342378.1"
                     /translation="MDIFVKKAIIHQFSPDDTELVLSDQLLTVSPKIEEYLRKKIERV
                     FSDEAKTGQFNPDNPFLDYLDGDLLTNSVKIANLWKEAFSISENLKTNDLIFIEFERN
                     GVEHFTFLRISLRENLAHVGLESGSPLKITQNNLPGAGSAPDEALIVNLQTRKYHLIE
                     KRIKHNGSFLNYFSDNLLQVTPAISAKKSIKAVEQTAQKIADNFHQGDFQFQSKIKSA
                     IFNNLEEDNELSPEKLADQLFDNNLTARLNFVDQLKEVIPDKISFDEIDSSRQLKKFE
                     NQKLSLSNGIELIVPNAIYEDAESVEFIQNDNGTYSILIKNIEDIKSK"
     gene            7763..8362
                     /locus_tag="U1396_001185"
     CDS             7763..8362
                     /locus_tag="U1396_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme family protein"
                     /protein_id="HEM5342379.1"
                     /translation="MKKLIRTLILLLLIFLGYKFYQTYSAVKQVMTYQTMVQEVLAEN
                     DTPANEELVLAMIYTETKGQEADVMQSSESATGYANTITDSRESIRQGIIYLTENLRL
                     AEEKGVEVWTAVQAYNFGPAYIDYIAEHGGEHTLSLAKEYSRTVVAPSLGNTTEETYT
                     YFHPLALLNGGKLYVNGGNIYYARQVRFNMHLMRLINLF"
     gene            8463..9221
                     /locus_tag="U1396_001186"
     CDS             8463..9221
                     /locus_tag="U1396_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5342380.1"
                     /translation="MKRNVLITGASSGIGKAIAYVFAANGDNIIITGRRLDKLEEIKQ
                     DIEKQYHVQVSVHSFDITNMEQTIVNCQKILEEVGQIHILVNNAGLALGLDKFQDYDL
                     TDMMTMIDTNIKGLLTVTRQLLPQMVENNEGHIINIGSTAGIYAYAGAAVYAATKSAF
                     KVLSDGIRIDTIDKNIKVTTLQPGIVETDFSQVRFHGDKERAATVYQGIDALQANDIA
                     SCTLFVANQPAHVQISDITIMATKQATGFTIHRD"
     gene            9238..9990
                     /locus_tag="U1396_001187"
     CDS             9238..9990
                     /locus_tag="U1396_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor 1 (IF-1)"
                     /protein_id="HEM5342381.1"
                     /translation="MKRKYLALALGLLTIMSLSACQTEKKGSSASTSTADTQVSNANT
                     STSSTIQREISLSSMDIDALMQGNYDSILGTWQNSQGNSLVFNSKGLVADSQSLLGRG
                     KITDGIFETGYVDATIGDVTLLMIPKGTQANTTETDTTDSTRDRMIVISQETTADVVD
                     VYYRLTNSATSGIDPLKNTETGVQLDSGPKTIDYANSILGENNWRVIEGNYTRTESIP
                     YNILEGDDNARYTIYQNGVIINADYQIVYQPQ"
     gene            9987..10319
                     /locus_tag="U1396_001188"
     CDS             9987..10319
                     /locus_tag="U1396_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
                     /protein_id="HEM5342382.1"
                     /translation="MILNVQDFHLAAFAYYDGLDVIDQLKPGTPVQLVGEPSNPHDSE
                     AVAIFYQGTKLGYIPSDKNSLISRLIYFGHGDILEARIQMSNTENHPDRQFRVVVKLK
                     DNRKNDSR"
     gene            complement(10340..11287)
                     /locus_tag="U1396_001189"
     CDS             complement(10340..11287)
                     /locus_tag="U1396_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342383.1"
                     /translation="MDVFPSFFIFLFNKLNIFVDLKNIFCYTCVMKTSTLGKLLELPN
                     FHHFYTVPIRENTESSGNYIIVFEQDKQPVFVDLKNETGHTREVRFASHFDSAGLLVG
                     LGAIPINYWPTCQILGVQKNNNRRGLSLSSLMDGYGRLPIFKEMAERYRARGQSTIYD
                     PYRYSYTIDEKKVIKDNQLTLIPKKEYEKIKDFHPFLQTKHGNVYAVPCFYQDRKRNQ
                     TIKIYIIGWYFYEKQLKISWKPSHSRKSRWRSSLVSVDKLSDRFFFQGELYKKGTYPV
                     FLEDLTIKNKAYQHRLDREFAAFLSIIEEQKRRAQLRVK"
     gene            complement(11315..12103)
                     /locus_tag="U1396_001190"
     CDS             complement(11315..12103)
                     /locus_tag="U1396_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342384.1"
                     /translation="MAVLKYSKARLLVLLIATGLSCIGIYWLGKEQNRLLNEQCHALN
                     IRIINDLGAKIDAIGGPQNPRIIGFFQQDDTTAISQRIGTASEEELKIAKPDNLFQKE
                     WIVLYPQTRSSPFENTSAYAVMKTSIKADWLHVTTSSETELDIFYEKADESLLTLEDL
                     VQDKESFHATLKTILVSAKNEAEIQVQKDILEMFESDDWSAIPFAYTEKSLILEKAVI
                     SVSAFVDSLNPYYFSEQTLADLRLSEESRQALEDSVDKTIITYP"
BASE COUNT         3961 a         2380 c         2461 g         3384 t
ORIGIN      
        1 taaggagaat gatttatgtt taagaaaaaa gcaactcaga tagttagcga aacgtcaatt
       61 aaaaaatcta gaaagtttct taatcggaaa acagcaggaa taactggtgg catcctactt
      121 acaacattta tcggttcaca attaatgact gctgagcttc caaaaaaaga tgacctttat
      181 ggacaacagt atgtaacagt cgtaaaacat cttcaggaag caggttttaa aaatattcag
      241 ggggtggaac ttagtgattt agaatttgga aaaataggtg aaagcaatct tgtcgaactc
      301 gtctctgttg acggagaaga ttggaaggaa ggacgtgctt taaaaaacat cccaattaca
      361 atctcctacc atgttcccaa aaaagatgcc gttgaattca acctaccagc ttctaaaaat
      421 ttagcagatg tcgaaaaaga gctgaaagat tcaggtttta agcaagtcga actaactcct
      481 gttctgctag tagaagaagg caatgcggac aaaaaagata aaattgatcg ccttcaaatc
      541 ggaaatcaca cctatcaatc caatcatttt tactctacta gtctccctgt tacattaacc
      601 tattttgacg ttagcaaaga taacatcaaa ctaccagaaa atctagcaga ggctaaaaca
      661 aaaccagagc tcgaaaaaca actaaaaaca gcaggattta cagacatcaa gtggactgct
      721 gttgcagaca aggataaagc aaagcacgaa aaaattcaaa aaattaatct aggtggtgca
      781 gagattcaat tgcccaccaa acaggagatt atcagcaaaa aatcaacccc aattgtgatt
      841 acctactacg atttctctag cttcgctgaa ctgccatcat ccatttcaac gaaaacagct
      901 acagatacta aaaaattgtt taccgatggt ggtttttctc aagtatctga agtagcaaca
      961 gagaccaatg aaattgctaa aaacggacaa atcattgcgg tcgagattga tggaaaatct
     1021 tttaacgaga tgaacgatac ggtcatcaaa aaagatagca aagtcattat caaatattgg
     1081 aatgctgaaa aagctattgc tgagaaagca cgtaaagagg aggaagaacg cctcgctgcc
     1141 gaagcgcaaa aagtagcaga agcacaaagt caagttcagc aatttgctgc tacaccatct
     1201 caaaacacat attatccaaa ttgtaaggca gttagacaag caggagctgc accaatctat
     1261 cgtggagaac caggttacgg tagtcattta gaccgtgatg gagatggagt tggatgcgag
     1321 taagaaaaaa cattgacaac gtttacattg catgctatac tgctcttata aggagggatt
     1381 actcatggcc tataaatacc gtatgatttt atcgttccta ctcgctggat tatgtttgta
     1441 tctagtagca actgtttttg ccaagagtat ctgggaagga ccgttgtttc ttgcattttc
     1501 tttttacagc ctgatatatg gttgtgttat gctctacaag tggaaaccaa cggcagctaa
     1561 aatcattttc caatgtattg gagaatttct ctctttacca tggtcttaat atcaaacaag
     1621 ctcaaaacgg gcttgttttt ctatttccta aatggtcaat ttatgataga atggaaggag
     1681 tgaaaattta agattggaaa gagaaaagtg gctcaattat attataaata tgggacaatg
     1741 aactcaggaa aaaccattga gattttgaag gttgcccaca actatgaaga acaaggaaaa
     1801 cctgttgtta tcatgacatc tgcacttgat actcgtgatg cctttggtgt tgtatccagt
     1861 cgtattggca tgagaagaga tgcagtggcg attgacgatg atatggatat ctttggtttt
     1921 attgaaaaaa tggaaccgcg tccttactgt gttctcattg atgaagcaca atttcttcga
     1981 cgtcatcatg tctacgcact tgctcgcgta gtcgatgaat tagatgtacc cgttatggct
     2041 ttcggtctta aaaatgattt ccgaaatgaa ctatttgaag gttcccaaca tttgctctta
     2101 ttggctgata aattagatga aatcaaaaca atctgccaat attgttctaa aaaagcgaca
     2161 atggttttga gaacacagga tggaaaacct acttatgaag gagaacaaat ccaaattggt
     2221 ggcaatgaaa cctacattcc tgtctgtcgc aaacattatt tttcaccaga aattaaagaa
     2281 ttaccctaat ttttgaaaat gaaatgagaa gcgactgtaa attgagcaac tgtatagaac
     2341 tgaatttgcc tatgactctg tgccaatttt catgacttac atactacggc aaaggaattg
     2401 aacacgccct acaagctaac tagaagtgtg ttctgtcaaa tatttagaaa ggaattgaat
     2461 acgggctacg aactgtgcaa aaaagatagt ttttcctagg acgctttcgt ccttcgtcaa
     2521 aactcctatt tttgctttgt tcgtttaacg cccttaatat cttaaaatta tgaacatcta
     2581 cgatcaatta caggcggtgg aggaccgcta cgaggaactt ggtgaattgt tgtctgaccc
     2641 tgatgtagtc agcgatacca agcgttttat ggagttgtct aaggaagaag ctgcaactcg
     2701 tgatacagta acagcctacc gcgaatataa gactgtactt caaaacatgg tcgatgcaga
     2761 agagatgatt aaagaatcct ctggcgatgc tgatttggag gaaatggcta aggaagaact
     2821 caaacaagct aaggctgata aagaggctta cgaagaaaag ctgaaaatcc ttcttttacc
     2881 aaaagaccct aacgatgaca aaaacattat cttggaaatc cgtggtgccg caggtggtga
     2941 tgaagccgcc ctctttgctg gagacctttt gaccatgtat caaaagtatg cagaaggtca
     3001 aggctggcgt tttgaagtca tggaggcttc ttataatggt gtcggcggta tcaaggaagt
     3061 ggttgccatg gtctctggtc aatccgttta ttcaaaactc aagtatgaat caggagctca
     3121 ccgtgtccaa cgtgtccctg tgacagaaag ccaaggtcgt gtccacacct caacagcaac
     3181 tgtcctcatc atgccagaag ttgaagaagt ggaatatgac atcgatccaa aagatcttcg
     3241 tgtcgatatt taccacgctt ctggtgctgg tggacagaac gtcaacaagg ttgcaactgc
     3301 cgtgcgtatc gttcacttgc caaccaacat caaggtagaa atgcaggaag aacggaccca
     3361 gcagaaaaac cgtgaaaagg ctatgaagat tatccgtgcc cgtgtagctg accactttgc
     3421 acagattgcc caagatgagc aggatgcaga gcgtaaatca actatcggta caggtgaccg
     3481 ctcagagcgt atccgtactt acaatttccc acaaaatcgt gtgacagacc accgtatcgg
     3541 cttaaccttg caaaagctcg ataccatctt gtcaggtaag atggacgaag tcgtagatgc
     3601 ccttgttctc tacgatcaaa cgcaaaaact agaagagctt aacaaataat gaattacgct
     3661 caattatttg cagcatacga agaacaatta gtcgcaatcg gtgaagaggc agaatccctg
     3721 tccttcacct ttcgtggctt aaagggattg aactttacgg aatttctcct cctgctccgt
     3781 caggaagtta caccgactga caaagaagag attgatgcga tttttcagca actttcccaa
     3841 caccgacctg cccagtacat tatcggcaag gctgattttc atggcttgga gtttgcggtg
     3901 gatgagcgag ttttgattcc aagacctgaa acggaagaat tagttaattt gattttgcag
     3961 gaaaatagcg gagcgggttt gcgtatctta gacatcggta caggaagcgg tgccatagct
     4021 atttcccttg caaaagctag atctgattgg gaagtggtag cagttgacat ttcaaaggat
     4081 gccctagcag tggctcagga aaatgcaaga accaaccaag tctctgttca ctttctagaa
     4141 tcggatgtct tccaagcagt gacagggcaa tttgacctca ttgtttctaa tccgccctat
     4201 atctcaccag atgacacaga cgaagttgga ctcaatgtat tggcttctga gcctcatctg
     4261 gccttatttg cggaagaaga tggcatggct atctatcgac aaattgcgga gcaagcaggg
     4321 gcatttttga aggaaaaagg aaaactctac tttgaaatcg gctacaagca agggcaagac
     4381 ctaactgact tactcgctct gcatttcccc aaaaagcgaa ttagagtcct caaagaccaa
     4441 tttggacagg atagaaaggt catagcggat gacaatggat aaactccgaa caattcttga
     4501 aaatggtggt gctgttatcc ttccaactga aacagtctat gggctttttg cccaagcctt
     4561 gaatgaagat gcagtcaatc gtgtctatca gttgaaacag cgtccgaggg acaaggcaat
     4621 gaacttaaat gtctcaaatc tgaacgatat ttattttttc agtcaaaata caccattttt
     4681 tctggagaaa ttgtataata gatttatgcc aggaccacta acgattatcc tgaaagcgaa
     4741 cgaaaacgtc cctttttggg ttaattctgg actggatact gttggatttc gtcttcccaa
     4801 tcacgaacaa accttacgtt tgatttcaga gactggccca cttattggac cgtccgccaa
     4861 tatttcagga aacgaaagtg gcaagaagtt ttcggacatc caggcacaat tttcagttga
     4921 tttgcctggc attgaggatg accaagctct gacaggcatt gattcaacga ttttggacct
     4981 ttctggacag aaagcgcgga ttttgcgcca aggtgctatc agccgtgaag agattcagaa
     5041 agccattccc gaaatagaat ttgaggtagt tttatgattc gtcccattga gaaaggtgac
     5101 ttggtagtca tccgagaaat caatgctcaa tccttagggt atgattgttc attggaacaa
     5161 actgagcgac aattttttag atgtacgagt acattggggc atatcttgtt ggtctatata
     5221 gatgacataa gtggcgcagt gcaaggttac attcacgcac aagtctatga aagtctctat
     5281 tcggatacag gcctcaatat tctcggacta gctgttttgc ctggtcatca agtacaaggg
     5341 attggagcaa gcctgctgaa agctgttgag caaattgcac agaaagaggg ctaccatttt
     5401 attcgcctca attctgctga aagtcgtctc caagcccatc ttttctacga aaagaatggc
     5461 tatcactccg ataaaatgca gaagcgtttt atcaagcaca tttagcccaa tacaaaggag
     5521 taccgtatat gatttttgac aaagttaact acaaagaatt tgataaagaa gtttgggaag
     5581 ctatccaagc tgaagaaaaa cgccaacaaa ataatatcga attgattgcg tctgaaaacg
     5641 ttgtttctaa agctgttatg gcagctcaag gttctatttt gaccaataaa tacgcagaag
     5701 gttacccagg tcgtcgttac tatggcggta cggaatgcgt tgacgtagtt gaaagtttag
     5761 ctattgaacg tgctaaagaa atattcggtg cgaaatttgc taacgttcag ccacactcag
     5821 gaagccaggc caattgtgct gcctacatgg ccttgattga gccaggagac actgttatgg
     5881 ggatggactt agctgcaggt ggtcacttga ctcacggtgc atcagttagc ttctcaggac
     5941 aaacttacaa ctttgtagct tacaatgttg acgaagaaac tggcttgctt gattacgatg
     6001 caattttaaa acaagcaaaa gaagtacagc caaaattgat tgtagcaggt gcttcagcct
     6061 atgcacgtac aattgacttt gctaaattcc gcgaaattgc agatgcagtg ggtgccaaac
     6121 tgatggtgga tatggctcat attgctggtc ttgtagcagc aggtcttcat ccgaacccag
     6181 tgccacatgc ccatattaca acaactacga ctcataaaac tcttcgtggg ccacgtggtg
     6241 gtttaatttt gaccaatgat gaagagctta tcaagaaaat caactcagcc atcttcccag
     6301 gcatccaagg tggtccatta gagcatgtta ttgctgcaaa agccgtatct ttcaaagaag
     6361 ttttggaccc agatttcaaa gactatgctc aaaaagtgat tgaaaacagc aaggccatgg
     6421 ctgaggtctt ccttgcaaac cctaacttta aagtcatcac aggaggaaca gacaaccatc
     6481 tcttcctcgt tgacgtgacc aaagttgttg aaaatggtaa agttgctcag catctcttgg
     6541 atgaagtaaa tattactctc aataaaaact caattcctta cgaaaaactc tcaccattca
     6601 aaacaagcgg tatccgtatt ggctctgcgg ccattactgc tcgcggtttt ggagtagagg
     6661 aagctcgcaa agttgcacaa ctaactatca aagcacttga aaatgcagaa aatgaaaaag
     6721 ctcttgagga agtccgtcaa gaagtgcgtg ctttgacaga tcaattccca ctttacgaag
     6781 gtttataatg gatatatttg taaaaaaagc catcatacat caatttagtc ctgatgatac
     6841 agagctggtc ctttccgacc agcttttgac tgttagccca aaaatagaag aatatttgcg
     6901 taaaaagatt gaacgtgtct tttctgatga agcaaaaaca ggacaattta accccgacaa
     6961 tccttttctt gactatttag atggtgacct actgaccaac tctgtcaaga ttgctaatct
     7021 atggaaagaa gcattttcaa tttctgagaa tttaaaaacc aatgacctca ttttcataga
     7081 gtttgaacga aatggtgtgg aacattttac ctttttgaga atctcactgc gtgaaaatct
     7141 cgcccacgtt ggtctggaaa gcggaagtcc tttaaaaatc acccagaata atttacctgg
     7201 agcaggttca gcacctgatg aagccttgat tgtcaatctt caaacgcgga agtatcattt
     7261 gattgagaaa agaatcaaac acaatggatc cttcctcaat tatttctcag ataatcttct
     7321 gcaagttaca ccagctattt ctgcaaaaaa atcaatcaaa gcagtagagc aaactgcaca
     7381 gaagattgct gacaatttcc atcaaggcga ttttcaattt caatcgaaaa tcaagtcagc
     7441 tattttcaac aatttagaag aagataatga gctttcaccc gaaaaattgg ctgatcagtt
     7501 attcgataac aacctgaccg ctcgtttaaa tttcgtcgat caactgaaag aggtcatacc
     7561 tgataagatt tccttcgatg aaattgatag tagccgtcaa cttaagaaat ttgaaaatca
     7621 gaagctatct ttatcaaacg gaattgagtt gattgtgcca aatgcaatct atgaggatgc
     7681 agaatcggtt gagtttattc aaaatgacaa cggaacctat tctattctta tcaaaaatat
     7741 tgaagacata aagagcaagt aaatgaaaaa actgatacgt acgctgatac ttcttttact
     7801 gatttttctc ggttacaaat tctatcaaac ctacagtgca gtcaagcaag tgatgaccta
     7861 tcaaactatg gtacaagaag tattggcaga aaacgacaca ccagctaatg aagaactagt
     7921 cctagcaatg atttacacag aaaccaaagg acaagaagca gatgtcatgc aatcaagtga
     7981 gtccgctact ggctatgcta acactatcac ggatagtaga gagagtatca ggcaaggaat
     8041 tatctaccta acagaaaacc tacggttggc tgaggaaaaa ggagtagagg tttggacagc
     8101 agttcaggca tataatttcg gtccagccta tattgactat attgctgagc atggtggaga
     8161 acatacactc tctttagcta aagaatactc cagaacagta gtagcaccaa gcttagggaa
     8221 tactacagaa gaaacatata cctattttca ccccttggct ttgctaaatg gtgggaagtt
     8281 atatgtaaat ggtggaaata tctactatgc tagacaggtt cgttttaata tgcatctgat
     8341 gcgcctcatt aatttatttt aatacctatc aaactcatcg gaaatctgat gagtttttaa
     8401 ctacagcatt tttacaaact aggtaaaatt gtagtataat aaagagaata ggagacagag
     8461 tgatgaaacg aaatgtattg attacaggtg caagtagtgg tattggcaaa gcaatcgctt
     8521 atgtgtttgc tgctaatggt gataatatca tcattacagg acgaagattg gacaaactag
     8581 aagaaattaa gcaagatatt gaaaagcaat accatgttca ggtatcagtt cattcatttg
     8641 atattacgaa tatggaacaa acaattgtaa attgtcaaaa aatcttagaa gaagttggac
     8701 aaattcatat tttggtaaac aatgctggtc tggcattggg attagacaaa ttccaagact
     8761 atgatttgac tgacatgatg acaatgattg ataccaatat taaaggatta ctaactgtga
     8821 cacgtcagtt attgccacaa atggttgaaa acaatgaggg tcatattatc aatattggct
     8881 caacggccgg tatttacgcc tatgcaggag ctgctgtcta tgctgcaacc aaatcagctt
     8941 tcaaggtgct ttcagacggg atccgtattg acacgattga taaaaatatc aaggtaacta
     9001 cgttacaacc cggtatcgtt gagactgatt ttagccaagt ccgttttcat ggagataaag
     9061 agagagcagc gacagtctat caaggaattg atgctcttca agcaaatgat attgccagct
     9121 gtactctatt tgtcgcaaat caacctgcac acgtgcagat ttctgatata accattatgg
     9181 caaccaaaca ggcaactggc tttactattc atagagatta gaggggagat agctagaatg
     9241 aaaagaaaat atttagcact cgctcttggc ttgctcacta tcatgtcgct ttctgcctgt
     9301 caaactgaaa agaagggcag ttccgcaagt acctcaactg ctgatactca ggtttctaat
     9361 gccaatacaa gcacgtcatc aacaatccaa cgtgagattt ctcttagttc tatggatata
     9421 gatgctctaa tgcaaggcaa ttacgatagt atactaggca cctggcaaaa tagccaagga
     9481 aattcactag tcttcaatag taaaggatta gtagcagata gccagtcctt acttggccgc
     9541 ggaaaaataa ctgacggaat ttttgaaaca ggctatgtag acgcaacgat tggcgatgta
     9601 acactattaa tgattcccaa aggaacacaa gcaaatacaa ctgagacaga cactactgac
     9661 tctacgcgcg atagaatgat tgtaataagc caagaaacaa cagcagacgt ggtagatgtc
     9721 tattatcgct tgaccaattc agccactagc ggtatagacc cattaaaaaa tactgaaacg
     9781 ggcgtccagt tggatagtgg accaaaaacg attgattatg ccaactcaat tttaggcgaa
     9841 aacaattggc gcgtcattga aggtaactac acgcgcaccg aatctattcc ttataatatt
     9901 ttggaaggcg atgataatgc ccgttacact atttaccaaa acggtgttat tatcaatgca
     9961 gattatcaaa ttgtttatca accacaatga ttctcaatgt tcaagatttt catttggcag
    10021 cctttgccta ctatgatgga ctagatgtaa tcgaccaact caagccagga acacctgttc
    10081 agctagtcgg agagccttca aacccacatg actcagaagc tgtagcaatc ttttatcagg
    10141 gcacaaagtt aggatatatc ccatcggata aaaactcact aatcagtcgg ttaatctatt
    10201 ttggacatgg cgatattcta gaagcacgta ttcagatgtc caatacagaa aatcatcctg
    10261 atcgccagtt tcgagtcgtt gtaaaactaa aagataatcg taaaaatgat agtcggtaat
    10321 ttaccaacct acccattttc tacttaacac ggagctgtgc tctccgtttt tgttcttcaa
    10381 taatacttaa aaaggctgca aactccctat ccaggcgatg ttggtaggcc ttatttttta
    10441 ttgtgagatc ttccaggaac actggatagg ttcctttttt atacaattct ccctgaaaga
    10501 agaagcggtc cgataattta tcaactgaaa caagagaaga acgccagcgg cttttacgag
    10561 agtgagaagg tttccaagat atttttaatt gcttctcata aaagtaccag cctataatat
    10621 agattttaat agtctgattt cgttttctgt cttgatagaa acaaggaact gcataaacat
    10681 ttccatgctt tgtttgcaaa aaaggatgaa aatcttttat cttttcgtat tctttctttg
    10741 gaataagggt taattgatta tccttaataa ccttcttttc atcaatagta tatgaataac
    10801 ggtaggggtc ataaatggtt gattgtccac gtgctctata acgctctgcc atttccttaa
    10861 aaataggtag acgtccataa ccatccatca gactagatag actaagtcct cgtcgattat
    10921 tatttttctg cacaccaaga atctggcagg taggccaata attgatagga atggctccta
    10981 agccgaccag aagaccggcg ctgtcaaaat gactggcaaa gcgtacctca cgagtgtgac
    11041 cagtctcatt tttcaaatca acaaatacag gttgcttgtc ctgttcaaaa acaattatat
    11101 aatttccaga agactccgta ttttctctaa ttggaacggt gtagaagtgg tgaaaatttg
    11161 gtaattctag taactttcca agtgttgatg ttttcataac acaagtataa caaaaaatat
    11221 ttttcaaatc cacaaaaatg tttaatttgt taaacaaaaa tataaagaag ctgggaaaga
    11281 catccatgac gactttccca ctcccaccgt ttattcaagg ataggtgata attgtcttat
    11341 ctaccgaatc ttctaaagcc tggcgcgatt cttctgataa acgcaaatct gcaagggttt
    11401 gttctgaaaa atagtaggga tttagactat ctacaaatgc agaaactgaa atgacagctt
    11461 tctccaatat cagagatttt tcagtgtaag caaagggaat agcagaccaa tcatcactct
    11521 caaacatttc taaaatatct ttttgaactt gaatttcagc ctcattttta gctgaaacta
    11581 ggattgtttt tagtgtagca tgaaaacttt ccttgtcttg caccaagtct tccaaggtca
    11641 gcaagctttc atctgccttc tcataaaaaa tatctaattc cgtctctgac gaagtagtca
    11701 catggagcca gtcagccttg atactggttt tcattactgc ataggcagaa gtattttcaa
    11761 agggactgct gcgcgtttga ggatagagaa caatccactc tttctggaat agattgtcag
    11821 gtttagctat tttcagttcc tcctcagaag cggtaccaat ccgctggctg atagcagtag
    11881 tgtcatcttg ctgaaagaat ccaatgatac gcggattttg cggaccgcca atggcatcaa
    11941 tttttgctcc cagatcatta ataatgcgta tgttcaaggc atgacactgc tcatttaata
    12001 gtctattttg ctcttttccg agccagtaga ttccgataca agatagacca gtggcaataa
    12061 gcaagacaag taaccgcgct ttcgagtatt tcaacacagc catcacacct ttctaaaacg
    12121 ctttcagtca tatattatca tatataaata tcaaaagaaa ctattttatt ttaaggtacc
    12181 acatta
//
LOCUS       DASGBY010000059        11586 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.059, whole genome shotgun sequence.
ACCESSION   DASGBY010000059 DASGBY010000000
VERSION     DASGBY010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11586
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.059"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(355..750)
                     /locus_tag="U1396_001191"
     CDS             complement(355..750)
                     /locus_tag="U1396_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000282448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM5342385.1"
                     /translation="MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGER
                     EADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTRKYEKDGSNHYVTEILGQSFQLL
                     ESRAQRAMRENNAGDDLADLVLEEEELPF"
     gene            805..1584
                     /locus_tag="U1396_001192"
     CDS             805..1584
                     /locus_tag="U1396_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2785 domain-containing protein"
                     /protein_id="HEM5342386.1"
                     /translation="MKEFLMEKIHTSQPYTNAELAWLLENISHPDPAIRDELVYASFC
                     HIFLEGLITREQAQSLLQFSQETNHLSLESSTLKRSFTCLLYCLLLSVDNERDSVYFA
                     FLSTNDRELLFQQALDYLAIENDWSGYDEKLGWIHTAAHGADFLLATSCHDQFPAEKS
                     KEVWQTIVTCLTRQSKVFSAGEEIRLAQIPVYLLLNEKVTSKELTEWISKLDFPNQEP
                     VDYFRWLNLQHFLSSLYFQLRSHQASTEEIEQAIEGKIEPA"
     gene            complement(1618..2241)
                     /locus_tag="U1396_001193"
     CDS             complement(1618..2241)
                     /locus_tag="U1396_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011284429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 and tRNA-binding domain-containing
                     protein"
                     /protein_id="HEM5342387.1"
                     /translation="MIFTYNKEHVGDVLMVIVAEDKGQPVQFERKGQVARVFLEETGK
                     TVAWNIFEASSLVELAGNGQVFMTDEQVATLNAELAKEGFTESLVNDNSPKFVVGQIV
                     ELVPHPDSYHLNICQVNVGDKTVQIVAGAPNAAQGLKTIVALPGAMMPSGSLIFPGKL
                     RGEDSFGMMCSPRELALPNAPQVRGIIELDDSAVVGEALDPAKHWKG"
     gene            complement(2260..3216)
                     /locus_tag="U1396_001194"
     CDS             complement(2260..3216)
                     /locus_tag="U1396_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1002 domain-containing protein"
                     /protein_id="HEM5342388.1"
                     /translation="MKKSLGKILLAPVVLGLSLSLAPLVQAEIQTDVINEKWGKPTLV
                     YGGGLSDAQATEVNNLFGISDVNNVSRQVVVGTDMDQYLGTSGADTASLYSSVLVQKQ
                     DAGKGVVVDIKTPQNITLITETQYANAAITAGATDVLIDVAAPIQVTGESALTGVYKA
                     LAANGDTVDTARTEVAQQELTTVNEVATAHAGDEQFDSSALDKAVAEIKTALADYKKS
                     NGQVASEADINTIINDVLTQNGLENVITADEISKLVTFAKAYQETSAIDSAEVAAQLN
                     QFKQQAEQQISEAYKNLQDSGILEKIGAFFENLWKGLTGLFA"
     gene            complement(3261..3581)
                     /locus_tag="U1396_001195"
     CDS             complement(3261..3581)
                     /locus_tag="U1396_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM5342389.1"
                     /translation="MIFPTNLEEVAGLIEDGKPTVFLFVTTWCGDCHYIKPHLSAIEE
                     AFPDFRFVQLDRDDFMPLAQEWAILGIPSLVVLENGQEIGRFVDKNRKTKEEIMNFLS
                     GLGR"
     gene            complement(3578..3862)
                     /locus_tag="U1396_001196"
     CDS             complement(3578..3862)
                     /locus_tag="U1396_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4651 domain-containing protein"
                     /protein_id="HEM5342390.1"
                     /translation="MKKKRTALLAGLLGAGVLTASAQFYRKVQEDRKKAQALQEVRDF
                     FANVGEIATVYVDETASTQDSLVGGVVMEAGQVFLFENAQGSIQYREEER"
     gene            4075..5136
                     /gene="pepA"
                     /locus_tag="U1396_001197"
     CDS             4075..5136
                     /gene="pepA"
                     /locus_tag="U1396_001197"
                     /EC_number="3.4.11.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl aminopeptidase"
                     /protein_id="HEM5342391.1"
                     /translation="MTLFEKIKEVTELQSLPGFEGQVRNHIRQKITPHVDRIETDGLG
                     GIFGIKDTTVENAPRILVAAHMDEVGFMVSQIKPDGTFRVVELGGWNPLVVSSQAFTL
                     QLQDGRTIPAISGSIPPHLTRGGNAPGVPAIADIIFDAGFTNYDEAWAFGVRPGDVLI
                     PKNETILTANGKNVISKAWDNRFGVLMVTELLESLSGQALPNQLIAGANVQEEVGLRG
                     AHASTTKFNPDIFLAVDCSPAGDIYGDQGKIGDGTLLRFYDPGHIMLKNMKDFLLTTA
                     EEAGVKFQYYCGKGGTDAGAAHLKNHGVPSTTIGVCARYIHSHQTLYSMDDFLEAQAF
                     LQAIVKKLDRSTVDLIKNY"
     gene            complement(5181..6437)
                     /locus_tag="U1396_001198"
     CDS             complement(5181..6437)
                     /locus_tag="U1396_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM5342392.1"
                     /translation="MNYLEMRQWLSSRPASDLEHGVARVNWILERLDNPQLQVSTIHF
                     VGTNGKGSTLNALQSILQSSDYTVGRFTSPSIIDFREQIVFEQEMISEEDFVRIVTDL
                     QPLIEDLDQTAGLDAISEFEIVVVAMFVYFAHYQRPDILLVEAGMGGLQDATNVLAPL
                     AVVCPSIGLDHQAFLGETHAAIARHKVAVLRERVPLLYATDQPEVVAVFEDHASQLQS
                     PTYAVGREIILENSRAGFAVSSPLGRVEELKVLMQGRHQEVNAALAVTTAQLLSPDFP
                     KITNETIRQGLSQAIWPGRLELMKPRLMIDGAHNNESIAVLTELLEEKYADRDIEILF
                     AAINTKPVDQMLSQLSQFGPVSVTTFDDFRAVQLEDYPSGYERVQTYQEWLEQADLDN
                     PQKLYLITGSLYFITYVRKYILEELV"
     gene            complement(6491..7042)
                     /locus_tag="U1396_001199"
     CDS             complement(6491..7042)
                     /locus_tag="U1396_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate family ECF transporter S component"
                     /protein_id="HEM5342393.1"
                     /translation="MEKKIPKLTVQLLAAIAMTLALVMIVENYFSIRISDTLQVQFTF
                     VPNTILGAIAGPVWAAVFAAISDPVFVLFSGQTVLFTWILIEAVSAFIYGWFFYRKPL
                     DTKNKADWLYVAGVVVLIQVVISFIMTPIALHFHFGTPWIVLYSSRLIKAVFEIPLRI
                     VVTMLVLPSLQKIPELAKLMGIK"
     gene            complement(7357..8544)
                     /locus_tag="U1396_001200"
     CDS             complement(7357..8544)
                     /locus_tag="U1396_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM5342394.1"
                     /translation="MSKTIAINAGSSSLKWQLYQMPEETVLAAGIVERIGLNDSISTV
                     KYDGKKESEVLDIPNHTVAVKILLEDLLKHNIIVAYEEITGIGHRVVAGGEVFKESAV
                     IGPKEVEQIEELSALAPLHNPAHVAAMRAFEEVLPEVLNVAVFDTAFHTTMPKHAYLY
                     PIPQKYYTDHKVRKYGAHGTSHYYVAHEAAKVLGRPIEELKLITAHIGNGVSITANYH
                     GQSVDTSMGFTPLAGPMMGTRSGDIDPAIIPYLIANVDELKDAADVVNMLNKQSGLLG
                     VSGYSSDMRDIESGLEAKNPDAVLAYNIFIDRIKKFIGQYFAVLNGADALVFTAGMGE
                     NAPLMRNDVVEGLSWFGVEIDPAKNVRGANGDISTPESKVRVLVIPTDEELVIAREVE
                     RLK"
     gene            complement(8594..9547)
                     /locus_tag="U1396_001201"
     CDS             complement(8594..9547)
                     /locus_tag="U1396_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5342395.1"
                     /translation="MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQH
                     ETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV
                     DQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
                     ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSL
                     KYLEKDGFAILLAPNDLLTSPQSDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFV
                     LQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI"
     gene            complement(9604..10014)
                     /locus_tag="U1396_001202"
     CDS             complement(9604..10014)
                     /locus_tag="U1396_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGG"
                     /protein_id="HEM5342396.1"
                     /translation="MLLKKKVKAGILLYALLMLAVFSLLLQFYLHRQEAESRLVQVAR
                     QETTAYIMAQMVLDEVEQDLQVEKIVTGAVVNEKEANLTTGSKQKENRGRVSFQEGQA
                     RYQLKGDQLLVTVELTSDGLYTYQFPLGLSSEGG"
     gene            complement(9992..10426)
                     /locus_tag="U1396_001203"
     CDS             complement(9992..10426)
                     /locus_tag="U1396_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGF"
                     /protein_id="HEM5342397.1"
                     /translation="MLKSKIPAFTLLECLVALIILSGSLLVFEGLSKLLVQEAHYQGQ
                     TVQKEWLVFSSQLRLEWDQSDLVKVENGKVYVNKVEQALAFGKSRSDDFRKTNDRGQG
                     YQPMLYQVDSAAIYQENQLVRIDFSFKNGEERTFIYAFKEKS"
     gene            complement(10413..10706)
                     /locus_tag="U1396_001204"
     CDS             complement(10413..10706)
                     /locus_tag="U1396_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002282213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HEM5342398.1"
                     /translation="MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAW
                     ELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTADKIIVFREGKEVLSVVKK"
     gene            complement(10678..11085)
                     /locus_tag="U1396_001205"
     CDS             complement(10678..11085)
                     /locus_tag="U1396_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM5342399.1"
                     /translation="MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIF
                     LWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQAVQVPRNIEVLEGKTITLEEDG
                     GNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE"
     gene            complement(11066..11347)
                     /locus_tag="U1396_001206"
     CDS             complement(11066..11347)
                     /locus_tag="U1396_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM5342400.1"
                     /translation="MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSKQKDAVQE
                     KGNAAVVKVVESQMELYELEHDEEATVEDLQQAGYITEKQAKQYATAKK"
     gene            complement(11349..>11586)
                     /locus_tag="U1396_001207"
     CDS             complement(11349..>11586)
                     /locus_tag="U1396_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM5342401.1"
                     /translation="KTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNR
                     AMQLIQPLVFLFVALMVVLIYAAMLLPIYQNMEL"
BASE COUNT         3250 a         2800 c         2274 g         3262 t
ORIGIN      
        1 attttttaga gagctaaaaa cagattacct agaaagccgt ttttccgttc acgaaagttt
       61 tgcagaatgg tttttaaaac gtaaattagg ctttttgggg aaaataatgt tcgactatct
      121 actctggcta gtctggttgc ttctcttttc ccaccctcat tacatcatct ttttcttcta
      181 cggagttctc ctactttctc taattatcat gctgatagaa tggtggaaat atagaaaata
      241 agtagcaaaa aacgccaact ttcgtcagcg tttttaagga gatatgaaaa atatttagga
      301 ttgactatag tatagcctat ttttcaatac gctccatcgg tcttgggact gatattaaaa
      361 cggtaattcc tcctcttcta agaccaaatc agctagatca tcgccagcat tattttcacg
      421 catagcacgt tgggcccgac tttcgagcag ctggaaggat tgtcctaaga tttctgtcac
      481 atagtggttg ctgccgtctt tttcgtattt tcgcgttcgc aattcaccat caatggaaat
      541 tagactacct ttattaccat aggaaacaag cgtttccgcc agtttgcccc agaaaatgac
      601 attaagaaaa tctgcttcac gttcgccatt ttccgtctta aaacggcggt tgactgcgac
      661 agtaacacgg gtcagatttt tgccgttagg ggtttgagtg agttcaggtt gggccgtcaa
      721 gcgaccgatt aaaataactt tattatacat tttatatcct cctacttatt tattcgtaga
      781 aggattagaa aaggagcgaa aattatgaaa gaatttttga tggaaaagat acacacctcc
      841 caaccatata ctaatgccga actagcttgg ttgctggaaa acatcagtca tcctgatcct
      901 gctatacgcg acgaactggt ttatgctagt ttttgccaca tctttttgga gggcttaatc
      961 acaagggagc aagcacagtc gctactacaa ttctctcaag aaaccaatca cctttcccta
     1021 gaaagttcca cactaaaacg aagttttact tgcttgctct actgtctttt gctatctgtt
     1081 gataatgagc gagattctgt gtactttgca tttttaagca ctaacgaccg tgagctactc
     1141 ttccagcagg ccttggatta tttggcgatt gaaaatgact ggtctggcta cgatgaaaaa
     1201 ctcggctgga tccacaccgc tgcccacgga gcagattttc ttctggccac aagctgtcat
     1261 gatcaatttc ccgctgaaaa aagcaaagaa gtctggcaaa ctattgtcac ttgtctaact
     1321 agacaaagta aagttttctc agctggcgag gaaatccgtc tggcacaaat tcctgtatat
     1381 ttactactga atgaaaaagt aaccagcaaa gagttgacag aatggattag caagctggac
     1441 tttccaaatc aagaaccagt agactacttc cggtggctca atctccaaca ttttctgtct
     1501 agtctttact tccaacttag gtcacatcaa gcatcgaccg aagaaatcga acaggctatt
     1561 gaaggaaaaa ttgaaccagc ataaaagaat tggccaaagc gaccaattct tctttttcta
     1621 tcccttccag tgtttagctg gatcaagtgc ttctccgact actgcggagt cgtccaattc
     1681 gataatgcca cggacttgtg gtgcgtttgg cagagccaat tcacgcggac tacacatcat
     1741 accaaagcta tcttcaccac gcaatttccc tgggaaaatc aggctaccgc tcggcatcat
     1801 tgcccccgga agagccacaa tagttttcaa tccttgggca gcatttggtg ctccagctac
     1861 gatttgaacg gttttgtcac caacattgac ctgacagata ttgaggtggt agctgtctgg
     1921 atgcggaacc agttccacaa tctgaccgac aacgaatttc ggactattgt cgttgactaa
     1981 gctttcagta aaaccttcct tagccaattc agcattcaag gtcgcaactt gctcgtctgt
     2041 catgaaaacc tgaccatttc cagcaagctc aaccaaactt gatgcttcaa agatattcca
     2101 ggctactgtt tttcctgttt cctctaggaa aacacgcgcc acttgaccct tgcgttcaaa
     2161 ctgaacaggc tgacccttgt cttcagccac aatcaccata agaacatcgc cgacgtgttc
     2221 cttattatat gtaaaaatca tttctttttc atttctcctt tatgcaaata gaccggtcaa
     2281 gcctttccaa agattttcaa agaaggcacc gattttttct aaaatccctg aatcttgtag
     2341 attcttatag gcttctgaaa tttgttgctc cgcctgttgc ttgaactggt tgagttgggc
     2401 agcaacctca gccgaatcaa tagcagaggt ttcctgataa gctttggcaa atgtgactag
     2461 cttagaaatt tcatctgctg tgatgacatt ttctaaaccg ttttgggtca aaacatcatt
     2521 gatgatggtg ttgatgtcag cctcagaagc cacctgacca ttggactttt tgtagtcggc
     2581 aagagcagtc ttgatttccg ccactgcctt atccaaagca gagctgtcaa attgttcatc
     2641 accagcatgg gctgtcgcta cttcattaac agttgttaat tcttgttgag ctacttcagt
     2701 tcgagcggta tcaactgtgt caccattggc tgcaagagcc ttgtaaacac ctgtcagagc
     2761 ggactctccc gtcacctgaa tgggtgccgc aacgtcaatc aagacatctg tcgcaccggc
     2821 agtaatggcc gcattggcat actgcgtttc agtaatcaaa gtgatgttct gcggtgtctt
     2881 aatgtccacc acaacccctt tgccagcgtc ctgcttttgc accaagacag atgaatagag
     2941 ggaggctgtg tccgctccag atgtacctaa atattggtcc atatccgtgc caacaaccac
     3001 ctgacggcta acattattaa catccgaaat accaaataga ttgttgacct ctgtcgcctg
     3061 cgcatctgac aaacctccac cgtagactag tgttggcttg ccccattttt cattgataac
     3121 atctgtttga atctcagcct gcaccaaggg agcaaggctc aaactcaacc ccagcaccac
     3181 aggtgctaga aggatttttc ctagtgattt cttcatgttc tttcctttct tttgggaaat
     3241 ggcagagctt ctctgctaat ttatctaccc agtccagata agaagttcat gatttcttcc
     3301 ttggtcttgc gattcttatc gacaaaacga ccgatttcct gaccattttc caaaacaact
     3361 agacttggaa tgcctaaaat agcccattcc tgcgccaaag gcataaagtc atctcggtct
     3421 agttgcacaa aacggaaatc tggaaaagcc tcttcgatag ctgacaaatg cggtttgata
     3481 tagtggcagt ctccacacca agtcgtcaca aatagaaaaa cagtcggctt accatcttca
     3541 atcaagccag ctacttcttc aagatttgtt ggaaaaatca tctttcttcc tccctgtatt
     3601 gaatagagcc ttgggcattt tcaaatagaa acacctgtcc tgcctccatc acaactcctc
     3661 caacgagaga gtcttgcgtt gaggctgttt catccacata gaccgtcgca atttctccta
     3721 cattagcgaa aaagtcacgc acctcctgca aagcctgtgc ttttttacgg tcttcctgaa
     3781 ccttacggta aaattgagca ctagcggtga gcacacctgc ccccaataag cctgctagca
     3841 aggctgttct tttctttttc atgttgacta ttttatcata tttcctctga attttcccaa
     3901 aaatgccatt ggacttgtga cagctgagac aaactctcca caaacatatg aaaaagattc
     3961 agttttcaga aagcatgatt tcatcatgtg tttattgtat atttttccat attttcaaga
     4021 caagtctatc tcttcgtgat aaaatagtag taatcatgtc atggaggaag aagaatgact
     4081 ctttttgaaa aaattaaaga agttacagaa ttacaaagct taccaggctt tgaaggacag
     4141 gttcgcaacc atatccgcca gaaaatcaca ccgcatgtag accgcatcga aacagatgga
     4201 ctaggtggaa tttttggcat caaggataca actgttgaaa atgctcctcg catcttagtg
     4261 gctgcacata tggatgaagt cggctttatg gttagccaga tcaaaccaga cggtactttt
     4321 cgtgttgtcg agctaggtgg ttggaaccct ttggtcgtat cgagtcaagc ctttacgctt
     4381 caactacagg acggtcggac cattcctgcc atttcaggtt ccatccctcc acatctaaca
     4441 cgcgggggca acgctccagg cgtacctgcc atagctgata ttattttcga tgctggtttt
     4501 accaattatg acgaagcttg ggcgttcggc gttcgtccgg gggatgtcct cattcccaaa
     4561 aatgaaacca ttctaacagc caacggaaaa aatgtcattt ctaaggcttg ggacaaccgc
     4621 ttcggtgtcc ttatggtgac cgaactacta gaaagcctat ccggtcaagc gttgccaaat
     4681 cagttgattg ctggggcaaa tgtgcaagaa gaggttggtc ttcgtggtgc tcatgcctct
     4741 acaaccaagt tcaatccaga cattttcctc gctgttgatt gctcgcccgc aggtgatatt
     4801 tatggcgacc aaggaaaaat tggtgacgga actctgcttc gtttctatga tccaggtcat
     4861 atcatgttaa aaaacatgaa agacttcctc ctcacaactg ccgaagaagc aggtgtcaaa
     4921 ttccaatact actgtggtaa aggtggaaca gatgccggtg cagcccactt gaaaaaccat
     4981 ggtgttccat caacaactat cggtgtctgc gctcgttaca tccactccca tcaaactctc
     5041 tacagcatgg atgacttctt agaagctcaa gccttcttgc aggctatcgt taaaaaacta
     5101 gaccgctcaa cggttgattt gattaaaaat tattaaaaca aaagactttg ctgggttgaa
     5161 tgcccggcaa agcctttttt ctatacaagt tcttctaaaa tgtacttcct cacataggta
     5221 atgaaatata gcgagcctgt aatcaggtag agtttttggg gattgtccaa gtccgcctgc
     5281 tccaaccact cctgataggt ctgaactcgt tcataacctg acggataatc ttctaactgt
     5341 accgctctga aatcgtcaaa tgtcgtaacg ctgacaggtc caaattggct aagctgggac
     5401 aacatctggt ccactggctt ggtattgatg gctgcaaaga gaatttcaat atctctgtca
     5461 gcatactttt cttccaagag ttctgtcagg acggcgatgc tttcattatt gtgggctccg
     5521 tcaatcatga gccttggttt catcaattct aagcggcccg gccagatggc ttgggacaag
     5581 ccctggcgga tggtttcatt ggtaatcttt ggaaaatcag ggctgagaag ctgagctgtt
     5641 gtcactgcca aggctgcatt gacctcctgg tgacgaccct gcatcaagac tttcaactct
     5701 tccacacggc cgagagggct tgaaactgca aagcctgctc tgctattttc caaaataatc
     5761 tcccgcccta ccgcataggt cggactctga agctgactgg cgtgatcctc aaatactgcc
     5821 accacttctg gctggtcggt cgcatagagg aggggaaccc gctcacgcaa gacagcaacc
     5881 ttgtgacggg ctatagcagc gtgggtctct cccaaaaaag cctgatggtc caagccgatg
     5941 gacgggcaaa cgactgccaa gggggcaagg acattggtcg catcctgcaa accgcccatg
     6001 cctgcctcca ccaagagaat gtcgggacgc tggtagtggg caaagtagac aaacatagcc
     6061 actactacaa tctcaaactc cgagatggca tccagtccag ccgtctggtc caagtcctca
     6121 atcaagggtt gcaagtctgt cacaatcctc acaaaatcct cctccgaaat catctcttgc
     6181 tcaaagacaa tctgctctcg aaaatcaatg atagacggtg atgtaaagcg gccgacggtg
     6241 taatccgaag actgcaagat agactgtaag gcgttgaggg tcgagccctt gccatttgta
     6301 ccaacaaagt gaatagtcga cacttgaagc tggggattgt ccaagcgttc caaaatccag
     6361 ttgacacgtg caacgccatg ttctaaatca gaggccgggc gactagacaa ccactgcctc
     6421 atttctaaat aattcatgtt tccctctcta taaaaagcaa cagggggatg acctgttgct
     6481 tgatactgtt ttatttaatg cccattaact tggccaattc aggtattttt tgtaaacttg
     6541 gtaagacaag catagtcacg acaatccgta atggaatttc aaaaactgcc ttaatcaagc
     6601 gactgctata cagaacaatc caaggtgttc caaaatggaa atggagggca atcggtgtca
     6661 tgataaagga aatcacaacc tgaatcaaga caacaacccc tgcaacatag agccaatcag
     6721 ccttgttctt ggtgtctagc ggttttcgat agaagaacca gccgtagata aatgccgaca
     6781 ccgcctcaat caaaatccaa gtgaagagga ccgtttgccc gctaaacaag acaaagactg
     6841 ggtctgaaat agccgcaaag acagctgccc aaaccggacc agcaatagct cccaaaatag
     6901 tattgggaac gaaggtaaac tgaacctgta aagtatcaga aatccgaata gagaaatagt
     6961 tctccacaat catgaccaag gcaagggtca tcgcaatagc agccaacagc tgcaccgtta
     7021 gttttggaat tttcttttcc ataaaaaatg ctcctttttc aaaaaatgga gctgtcgtgt
     7081 gtattcgaca gcggatgcaa tggtttaccg cgctactctc agccagatcc aatgttccta
     7141 ctctaggaga catcagatac aagcaaagat cagcttcgtt atgtggcaac atcccatcca
     7201 catacacttg acgcaaacca tctactctgt gcaaatttct ttgctagtct attgtatcac
     7261 acactatata ttttgaccac ttgctaaaaa ctataccttt ctaaaggtat aaactataag
     7321 agaaactggc agtctccgac taccagttcg tttttcttat ttcaaacgtt caacttcacg
     7381 cgcaataacc aattcttcat ccgttggaat aaccaagaca cgaacttttg attctggcgt
     7441 tgaaatgtca ccattcgcac cacgaacatt cttagctggg tctatttcaa caccgaacca
     7501 agacaaacct tctactacgt cattgcgcat aagcggtgca ttttcaccca tacctgctgt
     7561 aaagacaagg gcatctgcac cattcaaaac agcaaagtat tgaccaatga atttcttgat
     7621 acggtcgata aaaatgttat aagccaaaac agcatctggg ttcttagctt ccaaacctga
     7681 ttcaatgtca cgcatatcgc ttgaataacc cgatacacca agcaaacctg attgtttatt
     7741 cagcatgttc acaacatccg cagcgtcctt caactcatca acatttgcaa tcaagtaagg
     7801 aataatcgct ggatcaatat ctcccgaacg agttcccatc attggaccag ctagaggagt
     7861 gaagcccata gaagtgtcaa ctgattgacc gtggtagttg gcagtaatag atacaccatt
     7921 tccgatgtga gccgtaatca attttaattc ctcaatcgga cgtcccaata cttttgctgc
     7981 ctcatgcgct acataatagt gactagttcc gtgagctcca tacttacgaa ccttgtggtc
     8041 ggtatagtac ttttgtggaa tcggataaag ataggcatgc tttggcatcg tagtgtgaaa
     8101 ggctgtatca aaaacagcta cattcaaaac ttctggtagt acttcctcaa atgcacgcat
     8161 tgctgctacg tgagcagggt tatgaagcgg tgccaaagca cttagttctt caatttgctc
     8221 aacctctttt ggtccaataa cagctgattc tttgaaaacc tctccacctg caacaacacg
     8281 gtgtccgata ccagtaattt cctcgtaagc aacgatgatg ttgtgtttaa gcaagtcttc
     8341 taggagaatc ttaaccgcaa ccgtatgatt aggaatatct aaaacttcac tttctttctt
     8401 cccatcatac ttaactgttg agatggaatc gttcaaaccg atgcgctcaa caatccctgc
     8461 cgctaatact gtttcttctg gcatttgata aagttgccat tttagacttg aactacctgc
     8521 attaattgca attgtttttg acatatctta cctcttttaa agcgttttcc taactagtat
     8581 aacagatttt cacttaaatt gcattctctt gcttccaatt tttgaaattg agcatgaact
     8641 tctgaatagc ttctggttct tgaagacttt gtaagggata aacaaacggc gtcaacgacc
     8701 ttgcagcttt cttttgcaag acaaaaatag acttggccat agcagccttc ccaaagagat
     8761 ttggtggcag ggcaatcatg gcaacaatat tggcttgctc ctgtaaccaa cctttcagca
     8821 aatcgctttg cggactagtc aataaatcat ttggagccaa caaaatcgca aagccatctt
     8881 tttccagata tttgagggat tgttccatga gtaaatgatg ggcgtaggta tgttcatttg
     8941 ggctggcgac ctgatagcgg ctagcaatct ggtcatctgg atagtagcca ataggcaaat
     9001 ctcccaaaat tacttgactt tccttcaaaa tctgcggacg taccgcatct ccctgagcaa
     9061 aagaaatatc tgcctgcatg acatccgcaa tacttgccga caaatcaatc aagaggtcgt
     9121 ccacttcaat ccccagatag tccaagtctt tctgactggc gttaagaatg gtctgagcta
     9181 gattgcctgt ccccgaacca atttctagaa ccgtcacctt ttgagtcggc accaattggt
     9241 ctactagaaa agataggata aatccgatag agtctggtgt gaactggtga ttgtactgca
     9301 tgggttcagt ctgattggcc ttgatgagca ggaattggta ggcacgacgc cattcttcct
     9361 tggttaaatc tagttgtttc aaggtctgat tgttattgac aacaaggtcc gtctcatgct
     9421 gattagctac gtaagcagca ttttgctcaa tcatggcatc atagatattg gtacctagct
     9481 ggttttggat ggtctgtacg ttttctaata gcaggtcgta agcctgttcg atcttttcaa
     9541 aattcatact cctatcttat caaaatttca cagactttgc accaaaaagg aaagcaagtc
     9601 aactcaccct ccttctgagg atagccccaa aggaaattga taggtataca gaccatcact
     9661 tgttaactca actgtaacca atagttggtc tcctttaagt tgataacgag cctgtccctc
     9721 ttgaaaggag acccttcctc tattctcctt ctgcttagaa cctgtggtta aatttgcttc
     9781 cttttcattc actaccgctc ccgtaactat tttttctact tgcaggtcct gctcgacctc
     9841 atccaagacc atctgagcca tgatgtaggc agtcgtttct tgccttgcca cctgtaccaa
     9901 gcgactctca gcctcttggc ggtggagata aaactgaagc aaaagactaa aaaccgccag
     9961 catcaaaagg gcataaagca ggatgcccgc cttaactttt ttctttaaaa gcataaataa
    10021 aggtccgctc ctctccgttt ttaaagctaa agtcgatgcg caccagctgg ttttcttggt
    10081 aaatggctgc gctatccacc tgatagagca tgggctggta accctgtccc ctgtcatttg
    10141 ttttccgaaa atcatccgac cgtgacttgc caaaggccaa agcctgttcg actttgttga
    10201 catagacctt gccattttca accttgacca agtccgactg gtcccactcc aaccgcaact
    10261 ggctagaaaa gaccaaccat tccttttgaa cggtctgacc ttgataatgc gcttcttgga
    10321 ccagcagttt tgacaagcct tcaaagacca gaagacttcc tgataggatg attaaagcta
    10381 ccaagcattc caagagagta aaagcaggaa ttttactttt taacaaccga taaaacctcc
    10441 tttccctcgc ggaaaacaat gatcttatcc gctgttcgtt gaacctgaac tgtaacaccg
    10501 tttaaggcta ggttatcttg cccggtctga acagccatct gtgctagatt gagaacctcc
    10561 tgttgttcca attcccaagc ctgtcgccta cgacctgcat ccacagctga taaaatcaag
    10621 ctgcaaatag tcactagggt cgcaagggca accagacttt ccagcaaaat ataagcctta
    10681 ttcttctgtt ttcttatagc gaccactccc tatatataat tgatacgtga ctattttttg
    10741 actaagccga aaacgaatct tggtcagaga agaatttcca ccatcttctt caagtgtaat
    10801 ggtcttccct tccaacactt ctatatttct gggtacctgt acagcctgat aaccatttgt
    10861 aacctcctgt ccaccgatag caaggttcac tttttggtgg aaactagctg ccaatttctg
    10921 actgtcttta tagatggcct caaattccca gagaaaaatt tcttcctgaa cagaccgaaa
    10981 gaccgtttgt actgttcctg ataaggaaac agctaaaaaa ctgacaacca acaaggtcag
    11041 caggctttca aacagggtaa aagccttatt ttttcgccgt agcatactgt tttgcttgtt
    11101 tttcagtaat ataacctgcc tgttgcaaat cctccaccgt tgcttcctcg tcatgttcca
    11161 attcgtagag ctccatctga ctctccacta ctttgacaac ggcagcattt cctttctctt
    11221 gaacagcatc cttttgtttg ctcaaatttg gcacaaataa gagcaagagc aggctaatga
    11281 tccccaaaac gactaacatt tccaccagag tgaacccttt taccttcatt tcaactaatt
    11341 ttttcatttt acaactccat attttgataa atcggcagca acatggctgc gtagatgaga
    11401 acgaccatta aggccacaaa gagaaagacc agcggttgaa tcaactgcat ggctctattg
    11461 acccgagaga aaaaatcctc ccaacactcg gctgcataaa ctgtcaactc gccacccaac
    11521 ttggacttga cctgaccata ctcgacaatc aaactcagct cccgcttaaa aaaggcgtag
    11581 gtctta
//
LOCUS       DASGBY010000060        11559 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.060, whole genome shotgun sequence.
ACCESSION   DASGBY010000060 DASGBY010000000
VERSION     DASGBY010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11559
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.060"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            165..980
                     /locus_tag="U1396_001208"
     CDS             165..980
                     /locus_tag="U1396_001208"
                     /EC_number="1.1.1.69"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 5-dehydrogenase"
                     /protein_id="HEM5342402.1"
                     /translation="MNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFN
                     DINQELVDRGMAAYRAAGINAHGYVCDVTDEAGIQAMVAQIESEVGIIDILVNNAGII
                     RRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETV
                     SAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQ
                     FIIAKTPAARWGEAEDLMGPAVFLASDASNFVNGHILYVDGGILAYIGKQPEA"
     gene            1032..1673
                     /locus_tag="U1396_001209"
     CDS             1032..1673
                     /locus_tag="U1396_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HEM5342403.1"
                     /translation="MKIALINENSQAAKNSLIFETLKSVTDAKGYHVFNYGMYGKEGE
                     SQLTYVQNGLLASILLVSKAADFVITGCGTGVGAMLAANSFPGVVCGFAVDPTDAYLF
                     SQINGGNALSLPFAKGFGWGAELNLKLLFERLFAEEMGGGYPRERVIPEQRNARILNE
                     MKAVTYKDLLTVLQEIDQDFLKETISGEHFQEYFFANCQDESIAAYLKTVLES"
     gene            1690..2691
                     /locus_tag="U1396_001210"
     CDS             1690..2691
                     /locus_tag="U1396_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEM5342404.1"
                     /translation="MKKVLLIGEPLIRITPTNYQELTDGVESRVFFGGSEINVACNLQ
                     GFGCETKLLTALPQGSLGDRFLDFLDGKGIDTSSVQRKGERVGVYYMEAGFGCRSSQV
                     YYDRGQSSLEAIQVEHFDMEQLFLEVGLVHFSGITVAIGSAVRAWLVQVLKEAKRRKI
                     PISMDLNWRSKMIGLRDAKKVFSQFATYADYCFGLEPIMANEKDWELFERDTATVHTI
                     RERMQTLKEAYKFQAIFHTIRQTDELGRNLYKAYGLADEFCCSQELKTQVLQRVGSGD
                     AFVAGALYKLLEGTSLKAVLDFAVASGTYKCSIEGDHMRQSLSKVESLLEGKNDIIR"
     gene            2702..3343
                     /locus_tag="U1396_001211"
     CDS             2702..3343
                     /locus_tag="U1396_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEM5342405.1"
                     /translation="MSPSQIISKLKEQGLVVVVRGDDKEVGFKTAQACIAGGITAIEV
                     AYTNPDANMIITELSRCHKDDVSVLIGAGTVLDSVTARQAIMAGASYIVSPSFNIEVA
                     KICHLYAVPYLPGCMTLTEITNALEAGCEMVKLFPGSVLGTNYITAIKGPLPHVSIMV
                     TGGVKLDNVSEWFNAGATVLGIGGEFNQLATKGEFGTIQELASSYASVRDKMK"
     gene            3629..4063
                     /locus_tag="U1396_001212"
     CDS             3629..4063
                     /locus_tag="U1396_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5342406.1"
                     /translation="MIKVIVVAHGQFASGILTSLKLIAGEVENIEAIDFSEGMSAQEL
                     KARIKSAILGEREVLILTDLLGGTPFKVSVELAAEQKEQNVVVLSGLNLAMILEANFS
                     RLTDDLEQLVGKLITTSKDGIVDSVSLLAEDNHDEELFEDGI"
     gene            4075..5265
                     /locus_tag="U1396_001213"
     CDS             4075..5265
                     /locus_tag="U1396_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEM5342407.1"
                     /translation="MIKDVLIESIAKKREFRNSTLLSKKEVEAAIELAIQQLVINCEY
                     FGESFPTPATFDNHYPKMDNTEWTNGFWTGELWLGHEYSLNNEMKALAKKNTTSFLER
                     VKQRIELDHHDLGFLYSPSTVADYKLTGSKEALEASLLAADKLMERYQEKGGFIQAWG
                     QLGKAEDYRLIIDCLLNLQLLFFAYEETGEQKYYDVALSHFYASVNTVIRDDASTFHT
                     YYFDPETGKPLKGVTRQGFSDDSSWARGQSWGIYGIPLAYRKIKDPACLNLFKGVTNY
                     FLNRLPEDNVSYWDLIFNDGSGHARDSSATAIAVCGIHEMLKYLPEVDEDKETYKYAM
                     HTMLRSLIDNYANRELAPGRPLLLHGVYSWHSGKGVNEGNTWGDYYYLEALLRFYKDW
                     ELYW"
     gene            5275..5766
                     /locus_tag="U1396_001214"
     CDS             5275..5766
                     /locus_tag="U1396_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HEM5342408.1"
                     /translation="MATPNIVMARIDERLIHGQGQLWVKSLGCNTVIVANDKVSEDKI
                     QQTLMKTVIPDSVAMRFFSLQKVIDVIHKANPAQTIFLVIKDLQDALTLVKGGVPITE
                     LNIGNIHNAPGKTQVTRSIFFGSEDKAIVRELNDVYKIRFNTKTTPSGNDGAVEVNIL
                     DYI"
     gene            5786..6562
                     /locus_tag="U1396_001215"
     CDS             5786..6562
                     /locus_tag="U1396_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000026606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5342409.1"
                     /translation="MTISLIQAALIGLWTAFCFSGLLLGLYTNRCIVLSFGVGIILGD
                     LPTALAMGAISELAYMGFGVGAGGTVPPNPIGPGIFGTLMAITSAGKVTPEAALALST
                     PIAVGIQFLQTSAYTLHAGAPESAIKHLRAGNLSKFKRVANGTVITFAFLGFALGFLG
                     AYSMDTLLKLVEMIPPVLLTGLSVAGKMLPAIGFAMILSVMAKKELIPFVLLGYVCAA
                     YLQLPVIGIAIVGSIFALKEFFNKPEQVAVKQEEAHDDWI"
     gene            6549..7364
                     /locus_tag="U1396_001216"
     CDS             6549..7364
                     /locus_tag="U1396_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5342410.1"
                     /translation="MTGSKLTKKDYLNTSLRAFFLQNGFNYSNYQGIGYANVMYPAFK
                     KHFGDDKEGLTKALEENCEFYNTNPHFLPFITSLHLVMLENDLPEEETRGIKMALMGP
                     LAGIGDSLSQFVLAPLLSTIAASLAGQGLVMGPILFFLGMNIILTSIKLLTGLYGYKF
                     GTSVIDKLSDQMATISKVANIIGVTVISGLAVTFVKISVPITFAAGELTEGADQKIVT
                     IQGMLDKIAPALLPALFTILVYYLIKNKKWTTYKLVILTVIIGILGSWLGILA"
     gene            7371..7679
                     /locus_tag="U1396_001217"
     CDS             7371..7679
                     /locus_tag="U1396_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM5342411.1"
                     /translation="MEQQTLYYVLIILVALSTILPVLTSYINRKRQQKALEEQLEKRQ
                     RYLSTLQAGDEVILFSGLHGKIIKLTDSLVELQIAEGVLVYVEKESIMGKAKELLFTK
                     "
     gene            7776..11270
                     /locus_tag="U1396_001218"
     CDS             7776..11270
                     /locus_tag="U1396_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5342412.1"
                     /translation="MGFFISQSKQHYGIRKYKVGVCSALIALSILGTRVAANQLPSTE
                     TASPQSSQLVETTPETTEAVMTSEVSSEVSPVTSTETQPSSTTAETLASPQAVQATKE
                     EKNLVANGEFISTTAPSGNWKELAATNWETWIPANVKKENGQVRIDEGRLHISSTASY
                     RVAVHQTVDVDPNKRYLFSYDVETKDLKGSGVRVRLRSLTAEGKDLSPQEFAYTPYKN
                     GSQAEHIEQILTVSPETRKLKVELFFENSVGQAWLDNISLVEYVEKTPETPEQSPELV
                     QPETGQISLASNKVYLPVRPDLTYRIADAAVATVEKNMIRPLAAGKTQVDVYDKDTKL
                     SSFELIVTEHQATVFDTLRNNWEDISLANKRYQSNDAQMKAFLGRLDAGVASSLEKWV
                     EPTEQSKTIFNDIDFSKSSHLTTVYRRLEQMAQVVENPDSAYYHDRSLIDLVRKGMNW
                     LYTNVYNENKSIDGNWWDYEIGTPRAVVNTLIYMHPYFSQEEILTYTKPISKFVPDPT
                     TIRKTLTNPVPAVGGNQTDLSKVAILEGALREDADRVRAGAQGLTTIMKFVDKGEGFY
                     RDGSFIDHTNVAYTGAYGNVLIEGFSQLLPVIQPTEFALKEEQTNILYEWIEKAFMPI
                     LVRGELMDMTRGRSISRATGESHVQAMEILRSLVRIAESAQPEQKTKLLSFVKAQLTS
                     DTFYDSYRSLKSYKDIDLVNKLLADNQIPAEVDKDYIAAFNNMDKFVYRSAQEGFTFA
                     LSMYSSRTQNYEDMNNENRKGWYTADGMVYLYNDDLSHYSNHYWATVDPYRLPGTTTT
                     KDKREDGSGEVTLASDFVGASQLGNRLATIAMDFNNWNNSLTARKAWIVLGNKIVFLG
                     TDIQHQSAQGAETTIENRKLLTGEKYSYYINGQPVDLSKEVVTDKTQSFYMTNGKDNQ
                     SIGYVFLNQLPTHAKLDQRTGKWSDINYNQSKEEVSNSFVSLWHEHAQTSSNYAYVLV
                     PNQSMEKVNQAAASVKLLHQDRDLQVVYDQEQNVWGVVKYTDTAYKLTDDITLTDAGL
                     YTIQKVEGGYRIAFYNPSTRTVKNGIELTKAGSSLTVEMEPTAAYPSTVWKVTMPEGS
                     DKQTGSVEKTEKEEKQLKENQPSSEVKQVVHHAAEKTKPSKPRLPQTGEEASLGLGFL
                     GLLTLGAVVDFKCRRSHS"
BASE COUNT         3513 a         2031 c         2687 g         3328 t
ORIGIN      
        1 ttattgtttg gggaatgaag atactcgaat tttataagat tatatcaaga ttcgttttga
       61 aagtatttaa aataaatgat aaaaaccgtt gacaaaaccg gtttactata ttacaataca
      121 atttgtaaac gctttacaaa tcaaaataca aaggagttac gaatatgaat cagcaatttt
      181 cattggatca attttctcta aagggaaaaa ttgctttggt aacaggggcg tcgtatggga
      241 ttggctttgc gattgcatcg gcctatgcaa aagcaggggc gacaattgtt tttaatgata
      301 ttaatcaaga gttggttgat aggggaatgg cagcctatag ggcagctggt attaatgcgc
      361 atggctatgt ttgcgatgta actgatgaag ctggaataca ggctatggtt gctcaaattg
      421 aatcagaggt tggaattatt gatattctag tgaataatgc tggtattatt cgtagagttc
      481 caatgattga aatgacagcg gctcaatttc gccaagttat tgatattgac ctaaatgctc
      541 cgtttattgt ttctaaagcg gttattccat ctatgattaa aaaggggcat gggaagatta
      601 tcaatatttg ttccatgatg agtgagttag gacgagaaac agtgtctgct tatgcagcgg
      661 ctaagggtgg gcttaagatg ttgacgaaga atattgcgtc ggaatacggt gaagccaata
      721 tacaatgtaa cggcattggt cctgggtata ttgcaactcc acaaacagct ccgttacgtg
      781 aactccagaa ggatggttct cgtcatccat ttgatcaatt tattatcgcg aagacccctg
      841 cagctcgttg gggtgaagct gaggatttga tgggtccagc agtcttttta gcaagtgatg
      901 ctagtaattt tgtgaatggg cacattcttt atgttgatgg gggaattcta gcttacattg
      961 gtaaacagcc ggaagcgtaa taaacgaatt aacaaattta acaaattttg atataagaag
     1021 ggaaaaaaac gatgaaaatt gcacttatta atgaaaatag tcaggctgct aaaaatagtc
     1081 ttatttttga aacattgaag tcagtaacag atgctaaagg gtatcatgtt tttaactatg
     1141 gaatgtatgg taaagaggga gaaagtcagt tgacttatgt acaaaatggt ctgttggctt
     1201 caatccttct agttagtaag gcagcggatt ttgttattac aggttgtggc acgggggtag
     1261 gtgccatgtt ggcggctaat agttttccag gggtagtttg tggcttcgcg gtagatccga
     1321 cggatgcata cctcttttca cagataaatg gaggaaatgc tttgtctctg ccatttgcaa
     1381 agggattcgg ttggggagct gaattaaatc tcaaattact ttttgagcga ctgtttgcag
     1441 aggaaatggg gggcggatat ccccgtgaac gcgttattcc ggaacaacga aatgctcgta
     1501 ttttgaatga aatgaaagca gtcacctata aagacttact gacagtactt caggaaattg
     1561 atcaagattt tttgaaagaa actatttcag gtgaacattt ccaagaatat ttctttgcca
     1621 actgtcagga cgagtcaatt gcagcatatt taaaaacagt attagaaagt taaagagtgg
     1681 ggggcggtta tgaagaaggt attactgatt ggtgaacctt taattcgcat tacaccaaca
     1741 aattatcaag aattgacaga tggtgtagaa agtcgtgtgt tttttggagg ttcagaaatc
     1801 aatgtcgctt gtaatcttca aggatttgga tgtgaaacca agcttttgac cgcactacca
     1861 caaggctctc taggtgatag atttttagat ttcttagatg ggaaagggat tgatacttcc
     1921 agtgttcaac gtaaggggga acgtgtgggg gtatactaca tggaagcagg atttggttgc
     1981 cgttctagtc aagtctacta tgatcgtggc cagtctagtt tggaagctat tcaagtcgaa
     2041 cattttgata tggaacaatt atttttagag gttgggttgg ttcactttag tggtatcacc
     2101 gtggctattg gttcagctgt tagggcatgg cttgttcaag tattaaaaga agcaaagcgt
     2161 cgtaaaattc cgatttcgat ggatcttaat tggcgttcta agatgattgg attaagagat
     2221 gcaaaaaaag tgttctcgca atttgcgacc tatgcagact attgttttgg tctggaacct
     2281 attatggcta atgaaaaaga ttgggaatta tttgaaagag atacggctac tgtccataca
     2341 ataagagaac ggatgcaaac tttaaaggaa gcctataagt tccaagcaat tttccatacg
     2401 attaggcaga cagatgaact aggcagaaat ttgtataagg cttacggatt ggctgatgaa
     2461 ttttgttgct ctcaagaatt gaaaactcag gtgttacaac gtgttggcag tggtgatgcg
     2521 tttgttgctg gggcattata taaattgtta gaggggacat cgttaaaggc tgttttagat
     2581 tttgcagttg ctagcgggac ttataaatgc agcatagaag gggatcacat gcggcaatct
     2641 cttagcaaag ttgagtcttt attagagggg aaaaatgaca ttatacgata aaggagaaaa
     2701 aatgagtcca tcacaaatta tttcaaaatt gaaggagcaa gggcttgttg tagtcgttag
     2761 aggagatgac aaagaagtcg gatttaagac ggcacaggcc tgtattgcag gaggaattac
     2821 agctatagag gttgcttata caaatcctga cgcgaatatg attattacag aacttagtcg
     2881 atgccataaa gatgatgttt ctgttttaat tggggctgga acggttctag attctgtaac
     2941 ggcacggcaa gccattatgg caggagcaag ttatattgtt tcaccatctt ttaatataga
     3001 agttgcaaaa atctgtcatc tttatgcagt gccatatctt ccgggctgta tgactttaac
     3061 ggagattaca aatgctttgg aagcaggctg tgaaatggtt aaactgtttc ctggtagtgt
     3121 tttggggaca aactatatta ctgcaatcaa aggaccatta ccgcatgttt caatcatggt
     3181 aaccggtgga gtaaagcttg ataatgtttc agaatggttt aacgctggtg caactgttct
     3241 tggtattggt ggggaattta atcaattagc tactaaagga gagttcggta caattcaaga
     3301 attagcgtcc tcttatgcaa gtgttagaga taagatgaag tagtttattt caaaataagg
     3361 actgtatttt taacgttttc actttctcct gcctccaacg gggttgaatg tgggagaaag
     3421 tgagatgtta caggggaaat tttgaacgga aacatggaga tatttggtac tcctgtttat
     3481 gaaaagaggg agctggagaa tattttttaa ataaaagtcc aacaaaatat aaaacgctta
     3541 cattttttat aaaatctatt gacaagtggt tgtcaatagt ctacaataca aagtgtaggt
     3601 aaaccggtaa agttaaaagg agagaattat gattaaagtg attgtcgttg ctcatggaca
     3661 gtttgctagt gggattctta cttcactaaa gttaattgca ggagaggtgg agaatattga
     3721 ggcaattgat tttagtgaag gaatgtcggc gcaagaacta aaagcacgca tcaaatcagc
     3781 tatattaggc gaaagagaag ttttgatttt aactgattta ctaggaggta cgccttttaa
     3841 agttagtgta gaattagcag cagaacagaa agagcagaat gttgtcgttc tttcaggttt
     3901 aaatcttgcg atgattttgg aagcgaattt ttcacggtta acagatgatt tagaacaatt
     3961 ggttggtaaa ttgattacca cctctaaaga tggaatcgtt gattcggtca gtctgttagc
     4021 agaggataac catgatgaag agttatttga agatggtata tgagggagaa atgcatgatt
     4081 aaggatgttt tgattgagtc aattgctaaa aaaagagagt ttagaaattc cactctattg
     4141 agtaagaaag aagttgaggc tgcaatagaa ttggcgattc aacaacttgt tatcaattgt
     4201 gaatattttg gtgagtcgtt cccgactccg gccacatttg ataaccatta tccaaagatg
     4261 gataatacag agtggacaaa tggtttttgg acgggcgagc tttggttagg acatgagtat
     4321 tctttgaaca atgaaatgaa agcgttagca aaaaagaata cgacatcttt cttggaacgt
     4381 gtcaaacaaa gaattgaatt agatcatcat gatttgggat ttctgtattc accatcaacg
     4441 gtagctgatt ataaattgac aggtagtaaa gaggctttag aggcttcgct cttggctgct
     4501 gataaattaa tggagcgcta tcaagaaaaa ggaggtttta ttcaggcctg ggggcaactt
     4561 ggtaaagcag aagattatcg gttgattatt gattgtttgc tgaatttaca attacttttc
     4621 tttgcttatg aggagacagg tgagcagaaa tattatgatg tagctcttag tcatttctac
     4681 gcttctgtta atacagttat tcgagatgat gcttcaacat ttcataccta ttactttgac
     4741 cctgaaacag gaaaaccgct caaaggggtt acccgacaag gatttagtga tgactcttcc
     4801 tgggcgcgtg gtcaatcttg gggtatttac ggtattccgt tagcttaccg taaaattaaa
     4861 gatcccgcat gtttaaattt gtttaaagga gtaaccaact actttcttaa tcgtttgcca
     4921 gaggataacg tttcctattg ggatttaatt tttaatgatg gtagtgggca cgctcgtgat
     4981 tcttctgcga cagcaatagc ggtttgtggt attcacgaga tgcttaaata tttgccagaa
     5041 gttgatgagg acaaggaaac ttataaatat gctatgcaca cgatgctacg gtccttgatt
     5101 gataactatg ctaatcgtga gttagctcca ggtcgtccat tgcttttaca tggggtctac
     5161 tcttggcatt caggaaaagg tgtcaatgaa ggaaatactt ggggcgatta ttattactta
     5221 gaagctttgc ttcgttttta taaagattgg gaattatatt ggtaggaggt taaaatggca
     5281 acaccaaata ttgtaatggc tcgtattgat gagcgactaa ttcatggaca gggacaacta
     5341 tgggttaaat ccttaggttg taatactgtc atcgtggcaa atgataaggt tagtgaagat
     5401 aagattcagc agacattaat gaaaacggtt attccagatt cagtagctat gcgtttcttc
     5461 tctttgcaga aagtgattga tgtgattcat aaggctaatc ctgctcaaac tattttctta
     5521 gttattaaag atttgcaaga tgcactaact ttggttaaag ggggagtacc aatcacagaa
     5581 ttaaatattg gaaatattca taatgcgcct ggaaaaacgc aagtaacacg gtctatcttt
     5641 tttggttcag aagataaggc tatagtgaga gagttgaacg atgtttataa gattcgcttc
     5701 aacacaaaga caacgccttc tggtaatgat ggggcagttg aagttaatat attggattat
     5761 atttaaaaaa ataaggagaa ttatcatgac gatcagtcta attcaagcag ctcttattgg
     5821 tctgtggaca gctttctgtt ttagcggtct attattgggg ctttacacaa accgatgtat
     5881 cgtgctttct tttggggtcg gaatcatttt aggagatcta ccaacggctt tagctatggg
     5941 cgctatcagt gagctggcat acatgggatt tggtgttggt gctgggggga ccgttcctcc
     6001 aaatccaatc ggacctggta tttttggtac tttgatggct attacaagtg ctggaaaagt
     6061 aacaccagaa gcagctttag cactttcaac acctattgcg gtaggtattc aattcttaca
     6121 aacttcagca tatactttac atgcgggtgc tccagaatca gctatcaaac atcttcgtgc
     6181 aggaaacctt tctaaattta aacgtgttgc aaatggtaca gtgattactt tcgccttttt
     6241 aggatttgct cttggtttct tgggtgccta ttcaatggat actcttttga aattggttga
     6301 aatgattcca ccagtattat taaccggatt gagtgtagca ggtaagatgc ttccagctat
     6361 cggttttgca atgattttgt ctgtaatggc taagaaagaa ttgatcccgt ttgtattgct
     6421 tggctatgtt tgtgcagctt atctacaact gcctgtaatt ggtatcgcaa ttgtcggtag
     6481 tatctttgca cttaaagaat tctttaataa accagaacaa gtggcagtga aacaggagga
     6541 agcacacgat gactggatct aaactaacta aaaaagatta tctcaacact tctttacggg
     6601 ccttcttctt gcagaatggt ttcaattaca gtaattatca agggattggc tatgcaaatg
     6661 tcatgtatcc agcttttaag aagcattttg gtgacgacaa agaaggatta actaaagctt
     6721 tagaagaaaa ctgtgagttt tacaatacca atccacattt tcttccattc attactagtc
     6781 ttcatttggt catgttagaa aatgatctcc cagaagaaga gactcgtggg attaagatgg
     6841 ctctgatggg gccgttggca ggaattggtg actcactttc acaatttgta ttagccccac
     6901 ttttatctac gattgctgcc tctctagcag gtcaaggact ggttatggga ccgattcttt
     6961 tcttccttgg aatgaacatt atcttgacct ctatcaagtt gttgactggt ttgtatggct
     7021 ataaatttgg taccagcgtg attgataagt tgagtgacca aatggcaaca atttctaagg
     7081 tagccaatat catcggtgtg acagttatct ctggtttagc agtaaccttt gtaaaaattt
     7141 cggtgccaat cacctttgcg gcgggtgaat taacagaagg agcagatcag aaaattgtaa
     7201 ccatccaggg aatgttagac aagattgccc ctgcgttgct tccagccttg tttacgattt
     7261 tggtttatta tctcatcaag aacaagaaat ggacaaccta caaactagtt atcctgacag
     7321 ttatcatcgg tattttgggt agctggctgg gcatccttgc ataagcgcct atggaacaac
     7381 aaactctcta ctatgtacta attattttag tagctctatc gaccatactt cctgtactca
     7441 cttcttatat caatcgtaag cgacaacaaa aggcacttga ggagcaactg gaaaaacgcc
     7501 aacgctactt atcaacctta caggctggag atgaggttat cctcttctct gggctgcatg
     7561 ggaaaatcat caaactaaca gacagcttgg tagaattgca gattgcagaa ggtgttcttg
     7621 tttacgttga aaaagagtcg attatgggaa aagccaaaga actacttttt acgaagtagt
     7681 tcttctttct tgcctccgca aggaagcggt tgcaggatta aaattatacc cctgggacat
     7741 tgttttgccc cgcataaaaa ggaaaggaaa caccaatggg attttttatc agtcaaagca
     7801 agcagcatta cggcatccgg aaatataagg tgggtgtctg ctccgccctt atcgcgctgt
     7861 ctatcttggg aacaagggtt gcagccaatc aactgccaag tacagaaaca gctagtccac
     7921 aaagcagtca gttagtggaa acaactccag aaacgacaga agcagtaatg acaagcgagg
     7981 tcagctctga ggttagtcct gttacatcaa cagaaaccca gccttcaagc accactgcag
     8041 aaactcttgc cagtccgcaa gctgttcagg cgacaaaaga agagaagaac ctagtagcca
     8101 atggggagtt catcagtaca acggcaccat caggaaactg gaaagaattg gcagctacaa
     8161 actgggaaac atggattcct gcaaatgtga agaaagaaaa cggacaggtt cgcattgatg
     8221 agggacggct gcatatctct tcaacagcta gctatcgagt ggcagtgcac caaacagtgg
     8281 atgtagaccc taacaagcgc tatctcttta gctatgatgt agaaaccaag gacctgaagg
     8341 ggagcggtgt tcgtgttcgc ttgcgcagtt tgactgcaga aggcaaggac ttgagtccac
     8401 aagaatttgc ctatacacct tataaaaatg gaagtcaggc ggagcacata gagcagatct
     8461 tgacggtatc tccggaaact cgtaaattga aggtggaact gttttttgag aatagtgtcg
     8521 gccaagcctg gctggataac atctcgctgg tcgaatacgt agaaaagaca ccagaaacac
     8581 cagagcaaag cccagaactt gtccaacctg aaacagggca aataagtctt gccagcaaca
     8641 aggtctacct gcctgttcgg ccagacctga cctatcggat tgcggatgcg gctgtggcca
     8701 cagtagagaa aaatatgatt cgtccgcttg cggctggaaa gactcaggta gatgtctatg
     8761 ataaggacac caagctatct agtttcgagc tgatagttac agagcatcag gcaacagtct
     8821 ttgatacctt aaggaacaac tgggaagata tttctttagc caataaacgc taccaatcta
     8881 acgatgctca gatgaaagcc tttctagggc gtttagatgc cggtgtagct tcttctcttg
     8941 aaaaatgggt tgaaccaaca gagcagagca aaacgatttt caacgatatt gactttagta
     9001 aatccagcca tctgacaaca gtctatcgcc gcttggagca gatggctcaa gtagttgaga
     9061 atccagactc agcctattac cacgaccgct cacttatcga tttggtcaga aaaggaatga
     9121 actggcttta caccaatgtt tataatgaaa ataagtcaat tgatgggaat tggtgggatt
     9181 atgaaattgg aactccgcgt gcggttgtca acaccttgat ctacatgcat ccctacttta
     9241 gtcaggagga gattctaacc tataccaaac cgatttcaaa atttgtacca gatccaacca
     9301 ctatccgtaa aacattgacc aatccagtcc cagcagttgg cggtaatcaa acggatttga
     9361 gcaaggtggc catcttggaa ggagctcttc gcgaagatgc tgaccgtgtg agggctggtg
     9421 cgcaaggttt gacaacgatt atgaaatttg tagacaaggg agagggattc tacagggatg
     9481 gctcctttat cgaccacacc aatgttgcct acacaggggc gtacggaaat gtcctcattg
     9541 aaggtttttc acagttacta ccagttattc agccaacgga gtttgccctc aaggaagaac
     9601 agaccaacat tctttatgaa tggattgaaa aagcctttat gccaatattg gttcgcggtg
     9661 aactgatgga tatgacccgc ggtcgttcca tcagtcgggc aactggtgaa tcacatgttc
     9721 aggccatgga gattttaagg tctttggtcc gcattgcaga atcagctcag cctgagcaaa
     9781 aaaccaaact tctctccttt gttaaggcac agctgacctc tgataccttc tatgacagct
     9841 accgcagcct caaatcctat aaggatattg atttggtcaa caagctttta gctgataatc
     9901 aaatccctgc tgaagtggat aaagattata ttgcagcctt caacaatatg gataagtttg
     9961 tttatcgaag tgctcaagaa ggctttacct ttgccttgtc tatgtactct tctagaactc
    10021 aaaactatga agatatgaac aatgaaaacc gcaagggttg gtatacagca gatggcatgg
    10081 tttacctcta caatgatgat ttgagtcatt acagtaacca ctactgggca acagttgacc
    10141 cgtatcgctt accgggaacg acaacgacca aggacaaacg agaagatggc agtggcgagg
    10201 taactcttgc aagtgacttt gttggagcaa gccagttagg caaccgctta gcgacgattg
    10261 caatggattt caacaactgg aacaatagtc tgactgctcg taaggcttgg attgttctgg
    10321 gaaataagat tgttttccta ggtactgata tacagcatca atctgctcaa ggcgccgaga
    10381 caacgattga aaaccgtaaa ctcttgaccg gagaaaaata tagctattac ataaatggcc
    10441 agccagttga tttgtccaaa gaagtagtga cagataagac tcaatccttt tacatgacca
    10501 atggcaagga caaccagtcc atcggttacg tcttcttgaa ccaactgccg acccatgcca
    10561 aattagacca gcgaactggc aaatggagtg acatcaacta caaccagtcg aaagaagaag
    10621 tgagcaattc ctttgttagc ctatggcatg aacatgcaca gacttcaagt aactatgctt
    10681 acgtccttgt tccaaaccaa tctatggaaa aagtgaatca ggcagctgct agtgtgaaat
    10741 tgcttcatca agacagggat ttgcaagtgg tatacgacca agaacagaat gtctggggcg
    10801 ttgtgaaata cacggataca gcctacaagc tgacagatga tattacctta acagatgccg
    10861 gtttgtatac cattcagaaa gtcgaaggtg gctatcgcat cgccttttac aatccgtcta
    10921 cccgaaccgt aaagaatggc attgagttga caaaggcagg ttctagtctg actgttgaga
    10981 tggagccgac tgcggcttat ccatccactg tctggaaggt tactatgcca gaaggttctg
    11041 ataaacaaac tggaagtgtc gaaaaaacag aaaaagaaga aaaacaactc aaggaaaacc
    11101 aaccaagttc agaggtgaaa caagtggttc atcatgctgc cgaaaaaaca aagccgagta
    11161 agccccgtct gccccagaca ggagaagaag ccagtctggg tcttggtttc ttaggtttgc
    11221 taaccttggg ggcagtggtg gatttcaagt gtcgcagatc gcactcctaa atgaaattcg
    11281 tgggtgaagg gggagcggga aagaactcga ctagtcaaaa aagagttcgt caacaagtct
    11341 ttatttctag ttgttgagct gaaacagtct atccccagac tgtttcactc ccacccccgc
    11401 atagttgatt aaatcagatt cggagtatga aatacgaatt gctgaaattt gttttggaac
    11461 tcctatctcc aacctttaac agtccactga actgttaaag ccaatcaatc actgcgctaa
    11521 gatgttgata tgaactttga ggagtggatc tgggctttg
//
LOCUS       DASGBY010000061        11519 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.061, whole genome shotgun sequence.
ACCESSION   DASGBY010000061 DASGBY010000000
VERSION     DASGBY010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11519
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.061"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..428
                     /locus_tag="U1396_001219"
     CDS             <1..428
                     /locus_tag="U1396_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5342413.1"
                     /translation="SQAVEPSSWSKGWFAQDLINLDEEKTAFENVSCTSLQDRMTILN
                     LLGMLGLSYDKAQQKVANLSGGERVRLSLAKVLLADANLLILDEPTNFLDMAAIEALE
                     TFLKEYEGSVLLVSHDQQFVETSVHRQWEIVQACLVKKS"
     gene            520..2595
                     /locus_tag="U1396_001220"
     CDS             520..2595
                     /locus_tag="U1396_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEM5342414.1"
                     /translation="MKKRKNKPLEHDGNFISLRLNILFSIVIFLFLVLILRLADMQII
                     NHDFYSNKLSTASQKIISNGSIRGQIYDAQGKPLVENEIQQVVSFTRPNKMSAQEMKE
                     VANKLLQWVNVSDVTITQRDKADYYLADEEVYRQVVEALPKDKKYDSDGNYLSESTIY
                     SNAVDSIPAEALQYSEQDNKAIELFKQMNGATYFSTVNLVTDTLTSEQVAHIVANESQ
                     LPGISTTNNWQRTILPTSLSSIIGTVTSEQAGLPAEDAEYYLSKGYSSNDRVGTAYLE
                     KQYEEVLQGQREKKQINLDRNGNIESIETIQEGQQGNNIKLTIDLAFQDGVNAILRKY
                     FESELATGSALYSEGVYAVALNPSTGAVLAMSGYSHEKGSSTITEDALGTITSVFTPG
                     SIVKGATISSGWENGVISGNQVQLDEPIYFAGSAPITSWYGAYGSFNIDATEALEYSS
                     NIYMVKIALGLLGQTYSANMYLNDGDTLKNAMTKLRSTFAEYGLGASTGIDLPLESTG
                     FLPDKYTTANFITNAFGQFDNYTPMQMAQYAATIANNGTRISPHLVEGIYGNNAQGGL
                     GELIETVSGKEMNQVNISAEDMSLLRQGFYQVVNGSGRFNTGSAIGRGAAVTISAKTG
                     TAETYTTTASGDVVTAINTNVVAYAPSDNPQIAVAVVLPNLTNQSSTTTKTITQEIIN
                     LYQSLHPMN"
     gene            2604..3200
                     /gene="recR"
                     /locus_tag="U1396_001221"
     CDS             2604..3200
                     /gene="recR"
                     /locus_tag="U1396_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEM5342415.1"
                     /translation="MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFA
                     KNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQSTILIVEDSRDVTALENIQEYHG
                     LYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
                     KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL"
     gene            3305..4351
                     /locus_tag="U1396_001222"
     CDS             3305..4351
                     /locus_tag="U1396_001222"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEM5342416.1"
                     /translation="MSKETLILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIS
                     QTGDFIKTQEFSQTPSADEKLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGS
                     IQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVAVIEGENIDDKIAE
                     IEGKLTYPVFVKPANMGSSVGISKAEDLAGLHKALDLAFKYDSRVLVEQGVNAREIEV
                     GLLGNADVKTTLPGEVVKDVAFYDYDAKYIDNKITMEIPAKIDEAIMDTMRDNAAKAF
                     RAIGGCGLSRCDFFLTEDGDIFLNELNTMPGFTQWSMYPLLWDNMGLAYPDLIEELVR
                     LAKEMFEKRESHLI"
     gene            4439..4819
                     /locus_tag="U1396_001223"
     CDS             4439..4819
                     /locus_tag="U1396_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM5342417.1"
                     /translation="MYQTIVKGEGLFQALSQGYGESIRTFGVTEKGETPVSLVNIGLA
                     ACITMCVQGYYASQEGNKTMPVQVESRLDNQRFEVLIGIGESVSAQKQKEILAYVEKK
                     CKVKALLREDLQFETSFYVLESVE"
     gene            4821..5897
                     /locus_tag="U1396_001224"
     CDS             4821..5897
                     /locus_tag="U1396_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342418.1"
                     /translation="MFLAIEEMRQNKLRYGLILGLLILISYLVFFLTGLAYGLMQENR
                     TAVDKWQADYVLLNSESNRLITASKIDTSLLDQVDASDKALIRQQAGVAYVDENATSD
                     EKEKVNIFAVESDSFIVPNIVEGRLYEKTGEVLVDKTLSEVEGFGLGDQIYLSGSDEK
                     VTIVGYTDNAYFGVAPVVYMDFTAFAELMQADKQQAATSNLASAIVVRGDAASLPNEL
                     EKVAIADFIENLPGYKAQNMTFGFMIGFLIVISAIVIGIFIFVLTTQKSPIFGLMKIQ
                     GLSNGYISGSVLAQTFLLAGVGTVLGLAGTYLSSLVLPSAVPFENNWTFYIAIGLALV
                     VFALLGASFSVRSIFKVDPLRNLS"
     gene            5907..6575
                     /locus_tag="U1396_001225"
     CDS             5907..6575
                     /locus_tag="U1396_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342419.1"
                     /translation="MKTLIFENISKTFQDGSQTITALKPINFSIEEGEFVAIIGPSGS
                     GKSTFLTLAGGLQTPTTGRVLINQSDYSDLPEKKRAKLRYKDIGFVLQASNLIPFLTV
                     EKQLTLVDKVNKKADPSKRNELLSELGVDHLKNKFPKDLSGGERQRVAIARALYNDPA
                     LILADEPTASLDSNRAFEVVELLAKEAKERNKSIIMVTHDQRMIEKCDKVYEMKDGVL
                     TQIR"
     gene            6944..8305
                     /locus_tag="U1396_001226"
     CDS             6944..8305
                     /locus_tag="U1396_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEM5342420.1"
                     /translation="MKLTLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVP
                     LKGARDGHDFIPVAFENGCVVTLSEVSLDVPHILVEDCLAALQQLAAYYLEKTGVEVI
                     AVTGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQ
                     DHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPA
                     YPIADKLLPSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATN
                     AMVASYVGKTLGVSNEAIKSALASLNLTRNRTEWKKAANGADILSDVYNANPTAMRLI
                     LETFSSIPANEGGKKIAVLADMKELGSQSVELHNQMILSLSPDVLDTVIFYGQDIEGL
                     AQLASQMFPIGKVYFFRKNAEQDQFGDLVKQVKEVLGGKDQILFKGSNSMNLGKVVEA
                     VEK"
     gene            8396..9094
                     /locus_tag="U1396_001227"
     CDS             8396..9094
                     /locus_tag="U1396_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02206 family membrane protein"
                     /protein_id="HEM5342421.1"
                     /translation="MSDFFSNQISEAPNLNVLEHLFLMIIWFFMLHLCFRCYQKRWVH
                     IVFWWLQFIQIVSLYTWYIVADSPLSESLPFYHCRLAMLFILWAKPGPLKRYFAYLGL
                     FGSLAAFIHPVFDPFAFPHLTFFTFVIGHYALTVNCMLYLLSDLEGEMLKGKEVVKYT
                     LIMNMLILGVALLTGGNYGFLRQAPLVNTNNLPLNFFLVTCLLCFSILSVQAMLIAYL
                     KKESKQMDSQILKK"
     gene            complement(9125..11461)
                     /locus_tag="U1396_001228"
     CDS             complement(9125..11461)
                     /locus_tag="U1396_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5342422.1"
                     /translation="MNKQIKGLSTKEVQERIQNQQTNHFKTKTSASNWEIFRRNVFTS
                     FNALNFAIFLALLAVQAWSNLFFFGVIVLNAVSGMLTEWRARRMIDKLNLMNKDFIRV
                     VRDSKTLSLAPEDIVLDDVLLLSAGEQVPSDAIVLEGIAEANEAMLTGESDLIVKNTG
                     AELLSGSYLVSGQIYAKVIHVGAENYANKLMLEAKTHKPIVSRILYNMDKIAKFTGKI
                     IIPFGLALFLEAFFIKLLPLKDSVITSSTALLGMLPKGIALLTITSLLTAVIKLGMKN
                     VLVQEMYSVETLARVDVLCLDKTGTITQGKMTVENLLPLTNHYSLDTIQQILATYIQT
                     SEDTNSTAQAIRKEYGDLEHHYKASHIIPFSSDRKWGAMTIENIGRIFLGAPEMLLTQ
                     NPPSVSEAQARGSRVLILALSQQSLPSSQNQLPENIEPLALLEIADPIREDAAETLAY
                     LRSQEVTLKIISGDNPVTVSHIAKEAGFADYDSYIDCSKVDDEELIARAETTAIFGRV
                     SPHQKKLLIQTLKAQGHTTAMTGDGVNDILALREADCSIVMAEGDPATRQIANLVLLD
                     SEFRDIPEILFEGRRVVNNISHIAPIFLIKTIYSFLLGLICIASIALGKAEYLLVFPF
                     IQVQMTLIGQFVEGFPPFILTFERNIRPVEKHFLRKSLLLALPNALMVVLSVLIFHLM
                     QVFGYLNLHDMQTLSYYVLGSTGLLAVIRACLPLTKARLALIIYSVFGFFISSHFLHG
                     LIEIHPLNSHTLPIYSGLMLIFIPVFFWISYKQGAFKN"
BASE COUNT         3376 a         2141 c         2593 g         3409 t
ORIGIN      
        1 gctcccaagc agttgagcct tcaagctggt caaaaggttg gtttgcacag gatttgataa
       61 accttgatga agaaaagact gcttttgaaa atgttagttg tacctctctt caagatagga
      121 tgacgattct caatttatta ggtatgttag gactttctta cgataaggct cagcagaagg
      181 tagcaaatct gtctggtggt gagcgtgttc gtctctcctt agctaaggta ttgttggcgg
      241 atgcgaatct tttgatatta gatgaaccga caaattttct agatatggca gctattgagg
      301 ctttggaaac attcttgaaa gaatatgaag gaagtgtcct cttggtttcc catgatcaac
      361 agtttgtgga aacatctgtt cacaggcaat gggagatagt gcaagcttgt ctcgtgaaga
      421 aatcataaga aaatattttc tgaaaaggag gctctgtcta aaaaatattt tttgcctgtg
      481 gtataataag aaggatattt ctagaatgag gtctttgaag tgaaaaaaag aaagaacaag
      541 cctttggaac acgatggaaa ttttatttcc cttcgtttaa atattttatt ttctatcgtg
      601 attttccttt tcctagtttt gatattgcgt ctggcagata tgcagatcat caatcatgat
      661 ttttatagta ataaactgtc tactgccagt cagaaaatca tcagcaatgg ctctattcgc
      721 gggcagattt acgatgcgca gggaaaacct ttggttgaaa acgagattca gcaggtcgtc
      781 tccttcacac gtcccaacaa gatgtctgct caggaaatga aagaagtagc taataaactc
      841 ttgcagtggg tcaatgtttc agacgtaaca attactcaac gtgataaggc tgattattat
      901 ttggcagatg aagaggttta tcgtcaggta gtcgaggcct tgccaaaaga taaaaaatac
      961 gattccgatg gtaactactt gagcgaatca acaatttatt ctaatgcagt tgatagtatc
     1021 cctgccgaag cattacaata ttctgagcaa gacaataaag cgattgaact cttcaagcag
     1081 atgaatggag ctacttactt ctctactgtt aatttggtaa cggatactct gacttctgaa
     1141 caggttgctc atatcgtagc caatgaaagt caacttccag gcatttcaac gaccaataac
     1201 tggcaacgga cgattttacc aacttccctc agctccatta tcggtacagt aacgagtgaa
     1261 caggctggtt tgcctgcaga agatgcagaa tactatctat ccaagggcta ctcttcaaat
     1321 gaccgtgtgg gaactgccta cctcgagaaa caatatgaag aagtcttgca aggtcaacgt
     1381 gagaaaaaac aaataaacct agatagaaat ggaaatatcg aaagtattga gacaatccaa
     1441 gaaggacagc agggaaataa tattaaactg actattgatt tagcctttca agatggggtc
     1501 aatgctattt tgagaaaata ctttgaaagt gagctagcta ctggtagtgc gctttactcg
     1561 gaaggtgttt atgcagttgc attaaatcct tctacaggtg cagtacttgc tatgtcagga
     1621 tatagtcacg aaaaaggttc aagtactatt acggaggatg ctcttggtac cattacaagt
     1681 gtctttacac caggttccat cgtcaaagga gcgacaatca gctctggttg ggaaaatgga
     1741 gttatcagtg gtaatcaggt tcaattagat gaaccaatct attttgcagg ttcagcacca
     1801 attacatctt ggtatggggc ctatggtagt tttaatattg atgcgacaga ggctctggaa
     1861 tattcttcta acatctatat ggttaagatt gctttgggac tactcggtca gacctactca
     1921 gctaacatgt atttgaatga tggtgataca ttgaaaaacg ccatgactaa gcttcgttcg
     1981 acttttgcag aatatggtct tggtgcttct acaggtattg accttccact cgaatctaca
     2041 ggatttttac cagataagta tacgacagcc aactttatta ccaacgcttt tggacagttt
     2101 gataactata caccgatgca gatggcacag tatgcagcga ccattgcgaa taatgggaca
     2161 cggatttctc ctcacctcgt tgagggaatt tatgggaata atgcccaagg tggtttggga
     2221 gaattaattg agaccgtatc tggtaaggag atgaatcagg ttaatatctc cgctgaggat
     2281 atgtcacttc ttcgtcaagg tttctaccaa gttgtcaatg gtagtgggcg ctttaataca
     2341 ggtagtgcta tcggtcgtgg tgcggctgtg accatcagtg ccaagactgg tacagccgaa
     2401 acctatacaa caacagcttc aggagatgtg gttactgcga tcaacaccaa cgttgttgct
     2461 tatgcgccta gtgataatcc tcaaattgcg gtagcagttg tcctaccaaa tttgaccaat
     2521 caaagttcaa caactactaa aacaattact caagaaatta tcaatttata tcaatcactt
     2581 cacccaatga attaaggagg cttatgcttt accctacacc tattgccaag ttaattgata
     2641 gctattctaa attgccaggt atcggtataa aaacggctac ccgtttagct ttttatacta
     2701 ttggcatgga ggatgatgtc gttaatgagt ttgcaaaaaa tttattggca gccaagcgag
     2761 acctatctta ttgctctatt tgtggtaatt tgacagatca ggacccctgt gctatttgcc
     2821 aggactcaac gcgagaccaa tctactattt tgattgtaga ggatagtcga gatgttacag
     2881 ccttggaaaa tattcaagaa taccacggtc tttatcatgt cttgcatggc ttgatttctc
     2941 ccatgaatgg tattggacca gatgatatta atttgaaaac cctcctcact cgcctgatgg
     3001 acaatgaggt tacagaagtt attgtggcga ccaatgcaac agcagatgga gaagctacat
     3061 ctatgtatat ctcacgtgtc ctcaaacctg cgggaatcaa agtaacccga ctagctcgtg
     3121 gcttagcggt aggcagtgat attgaatatg cagatgaagt gaccctgttg agggctattg
     3181 aaaaccgcac agagctatag ctgttctgta gttagatacg ttcctaattt taagatagga
     3241 tagatatgat ttgttaaatt atgctatact aagagtaata gcgttgatac aggaaggaaa
     3301 atatatgtca aaagaaacct tgattttact atatggtggg cgttctgcag agcgtgaggt
     3361 atctgttctg tctgccgaaa gcgtcatgcg tgctatcaat tatgataaat tttttgtcaa
     3421 aacctatttc attagccaga caggggactt tattaagacg caagagtttt ctcaaacacc
     3481 gtctgccgat gaaaaactca tgacaaacgc gacgattgtt gaagagcaaa aaatccgtcc
     3541 gagcgatatt tatgaagaaa aggcggttgt tttccctgtt cttcatggcc caatgggaga
     3601 agacggatct attcaaggct tcttggaagt gcttcgtatg ccttatgttg gcactaatat
     3661 cttgtcttca agcgttgcta tggacaaaat cactaccaag cgcgtacttg aatcagcagg
     3721 aatctcccaa gtaccttatg tggcagttat cgagggtgaa aatattgacg ataagatcgc
     3781 agagattgaa ggaaaattga cttatccggt ctttgtaaaa ccagctaata tggggtcaag
     3841 tgtcggtatc tcaaaagctg aggatttagc tggcttgcat aaggcacttg atctggcctt
     3901 caagtatgac agccgtgtcc tcgttgagca gggtgttaat gcgcgtgaga ttgaggtcgg
     3961 tcttttggga aatgctgacg tgaaaaccac ccttcctggc gaagtagtca aagacgttgc
     4021 tttttatgac tacgatgcca aatacatcga caacaaaatc accatggaaa tcccagctaa
     4081 gattgacgag gctatcatgg acaccatgcg tgataatgct gccaaggcct tccgtgccat
     4141 cggtggttgt ggactttctc gctgtgattt cttcctgaca gaagacggcg acatcttcct
     4201 gaatgagctc aataccatgc caggctttac ccagtggtct atgtatccac tcctttggga
     4261 taatatgggc ctagcttatc cagacttgat tgaagagctt gttcgtttgg ccaaagaaat
     4321 gtttgaaaaa cgcgaaagtc acctcattta attattatca agattggaat cattccaatc
     4381 ttttttcttg caaaggtttg caaaaaggaa taaaatggaa caagttctgg aggtgtttat
     4441 gtatcaaacg atagtaaaag gggaaggtct gtttcaggct ctttctcaag gttatggcga
     4501 atcaattcgt acctttgggg taacggagaa gggtgagact ccggttagtc tagttaatat
     4561 tggcttagct gcctgtatca ccatgtgtgt gcagggctac tatgccagcc aagaaggcaa
     4621 taaaaccatg cctgttcagg tggagagtcg cttggacaat cagcgttttg aggtgttgat
     4681 tggaattggt gagtcggttt cagcgcagaa gcagaaagag attcttgcct atgtggaaaa
     4741 gaaatgtaaa gtcaaagctc ttttgaggga agacttgcag tttgagacaa gtttttatgt
     4801 cttagaaagt gtggagtaag atgtttttag caattgaaga aatgcgacaa aataagctgc
     4861 gttatggctt gattttagga ttattaatcc tgatttccta cctggtcttt ttcctgacgg
     4921 gtttggctta tggtctcatg caggaaaata gaacagcagt tgataaatgg caggcagatt
     4981 atgtcttgct taattcagaa agcaatcgct tgataacagc atccaaaatt gatacgagtc
     5041 tgcttgatca ggtggatgct agtgacaagg ccttgattcg ccaacaagct ggagttgcct
     5101 atgtggatga aaatgccacc tcagacgaaa aagaaaaggt aaacatcttt gctgttgaat
     5161 cagatagttt tatcgttcca aatattgtag aaggtcgttt gtatgaaaaa acgggagaag
     5221 tccttgtaga caaaaccttg tcagaagtag aaggttttgg gcttggagat caaatctatc
     5281 tgtcaggttc tgatgaaaaa gtgactattg taggttatac agacaatgct tattttggag
     5341 tggcgcctgt tgtatatatg gactttacgg catttgcaga attgatgcag gctgataaac
     5401 aacaagctgc aacgagtaat cttgctagtg ccattgtcgt tcgtggcgat gccgcttctc
     5461 taccaaatga gctggaaaaa gttgccattg cagactttat tgaaaatcta ccaggatata
     5521 aggcacaaaa tatgaccttt ggctttatga taggattctt gattgtcatt tctgccattg
     5581 ttattggtat ttttatcttt gttttgacaa cacagaaatc tccgattttt ggcttgatga
     5641 aaattcaagg tctttcaaat ggctatattt caggttctgt attggctcaa accttcctac
     5701 ttgctggtgt gggaacagtc cttggattgg ctgggactta tttgtcatcc cttgtcttgc
     5761 caagcgctgt tccatttgag aataactgga ccttctatat tgcaatcggc ctagcactag
     5821 ttgtatttgc cctattgggt gctagtttct ctgtacgttc tatctttaag gtagatccat
     5881 tacgaaatct atcttaggag gttgttatga aaacacttat ttttgaaaat attagtaaga
     5941 ccttccaaga tggcagccaa accattacgg ctcttaaacc aataaatttt agtattgaag
     6001 aaggcgaatt tgttgccatc attggaccat ctggttctgg gaagtcaaca tttttgacct
     6061 tggcaggtgg tttacaaaca cctacaacgg gtcgtgtttt aatcaatcaa tcggactatt
     6121 ctgatttacc tgagaaaaaa cgtgccaaat tgcgctataa ggacattggt tttgtcttgc
     6181 aggcttccaa tttgattcca tttctaacag tcgaaaaaca attaaccttg gttgataagg
     6241 tcaataagaa agctgatccg agcaagcgaa acgaactcct atctgaattg ggtgtggacc
     6301 atctcaaaaa caagttccct aaggatttgt caggcggaga acggcagcgt gtagctattg
     6361 ctcgtgcact ttataacgat ccagctttga ttctagctga tgaaccaaca gccagtctag
     6421 acagtaatcg cgcttttgaa gtggttgagt tattagctaa ggaagccaaa gaacggaaca
     6481 aatccatcat catggtaaca catgaccagc gcatgattga aaaatgcgac aaggtttacg
     6541 agatgaaaga tggtgtcctc actcaaattc gataaaaaat ggtataatgg gagcgggaaa
     6601 gaactcgact tgtcaaaaaa gagttcgtca acaagttttt atttctagtt gttgagctga
     6661 aacagtctat tcccagactg tttcactccc acccccgcac agctcaaact gtctgggaga
     6721 cagtttgagg ttggaaataa agcgaacact gatcgcatca gtaggtagga cagatttgga
     6781 gtgtaattac gaacagttga aatttgcttc gcaaatccca tctccaacct ttaatagtcc
     6841 actggactat taaagccaat caaccactgc gctgggatgt tgacgcaaat tttgagacgc
     6901 ggtgtggggg tggaaactag cctttagttt attggagaaa acaatgaaat taaccctaca
     6961 cgaagtcgct caggtcttgg gcgcaaaaaa tgatattagt ctttatcctg atagagcatt
     7021 caacaaggtc gagttcgaca gtcgcctgat tacagaaggg gatctttttg ttcccctcaa
     7081 gggagcgcgt gacggtcatg actttattcc tgtggctttt gaaaatggct gcgtagtaac
     7141 cctgtctgaa gttagccttg atgttcctca cattctagta gaggactgct tggctgcgct
     7201 tcaacaatta gcggcttact acctagagaa aacaggggta gaagtcattg ctgtgacagg
     7261 atcaaacggt aaaacgacca ccaaggacat gattcacgat gttctggcga cgacttacaa
     7321 gacttataag acacaaggca actacaacaa cgaaatcggt ctgccataca ccgtcctcca
     7381 catgcctgat gatacagaaa aactggtctt ggaaatgggc caagaccact tgggagatat
     7441 tcatcttcta tccgaaattg ccaaaccaag tctatcagtt attacccttt ttggtgaagc
     7501 gcatttagaa tttttcggct cacgagaaga gattgccaaa ggaaaattac agattgcaga
     7561 tggaatggag ccaggtagta aactcttgat cccagcatat ccgattgcgg ataagctctt
     7621 gccgagccat gtagacctca ttcgcttcgg tgagcaggct gatttgcagg tgactagtct
     7681 ggtcgagtca aaagatagcc tgaccttcac cgtcaatttt atggacggcg acattttcct
     7741 cccggtaacg ggcaagtaca atgccaccaa tgctatggta gcaagctatg tgggcaagac
     7801 cttgggtgtg tctaatgagg ccatcaagtc agccctagcc agtctaaact tgacccgcaa
     7861 ccgtaccgag tggaagaagg cggcaaatgg agcagatatt ctcagcgatg tctacaatgc
     7921 caatccaacg gctatgcgct tgattttaga aaccttctct agtattccag ccaatgaagg
     7981 cggtaagaaa attgctgtgt tagcagacat gaaagaactt ggcagtcagt cggttgagct
     8041 tcataatcag atgattttga gcttgtcgcc tgatgtgcta gacaccgtca ttttctacgg
     8101 tcaggatatt gaaggcctgg cccagttggc tagtcagatg ttcccaatag gaaaagtcta
     8161 tttctttagg aaaaatgcag agcaggacca atttggagac ctggtgaaac aagtcaagga
     8221 agtcctcggt gggaaagacc aaatcctctt taaaggctct aattccatga atcttgggaa
     8281 agtagtggaa gcagtagaaa agtagagagg cgagacctct cttttttggc aagtcttgtc
     8341 aaaacatcga aaagttgata tactgacttt tggggaaaga gaggaattta ataagatgag
     8401 tgattttttc agcaatcaga tttctgaagc accgaacctg aacgtattgg aacatctgtt
     8461 tctcatgatt atttggtttt tcatgctcca tctttgtttt cgttgttatc aaaaaagatg
     8521 ggttcatatt gttttttggt ggcttcaatt tatacagatt gtctcccttt atacttggta
     8581 tatcgtagct gattctcctc tttcagagag tcttcctttt tatcattgtc gcttggctat
     8641 gctttttatt ctttgggcga agcccggacc tttgaaacgt tattttgcct atctcggtct
     8701 ttttggatcg cttgcggctt ttattcatcc agtatttgac ccgtttgctt ttccacatct
     8761 aaccttcttt acttttgtta ttggccacta tgctttgacg gttaattgta tgttgtacct
     8821 gttatctgat ttagaagggg agatgttgaa gggaaaagag gtagtgaaat atacgcttat
     8881 tatgaatatg ctgattctag gagtagctct tttaactggc ggaaattatg gatttttgag
     8941 acaggcacct ttagtgaata ctaataatct tcctttgaat ttcttcttgg taacttgcct
     9001 actctgcttc tctattttga gtgtacaagc tatgttaatt gcctatttga aaaaagaaag
     9061 caaacaaatg gattcgcaga tattgaaaaa ataagacttg aaattagttt ttcaagtctt
     9121 atttttagtt tttaaatgcg ccttgtttgt agctaatcca gaaaaagaca gggataaaaa
     9181 tgagcattaa tccagaatag attggcaatg tgtgactgtt tagggggtgg atttcaatca
     9241 gaccatgtag gaaatgggag ctgatgaaga aaccgaaaac ggaataaata ataagagcca
     9301 gtcgagcttt tgtcagtggc aaacaggcac gaatgacagc cagtagacct gttgaaccaa
     9361 gaacataata agagagggtt tgcatgtcat gcaagtttaa gtatccaaat acttgcatta
     9421 aatggaaaat aaggacactg agaacaacca tgagagcatt tggtagggct aagagaagag
     9481 attttctgag aaaatgtttt tctacagggc ggatatttcg ttcaaaagtt aggataaaag
     9541 gaggaaaacc ttcgacaaat tgaccaatga gggtcatttg tacttgaata aatgggaaaa
     9601 ctaacaaata ttctgcttta cctagggcaa tactagcgat acagataagg ccaagtaaga
     9661 aagagtagat tgttttgata agaaagatgg gagcaatgtg ggagatgtta ttaacaacgc
     9721 gtcgtccctc aaagagaatc tcaggaatat cgcgaaattc agaatctagg aggactagat
     9781 tagcgatttg tctagtagcc ggatcgcctt ctgccataac aatggaacaa tcagcttcgc
     9841 gtagtgcaag aatatcattg accccatcac cggtcattgc agtagtatgt ccctgtgctt
     9901 tgagggtttg gatgagcaat tttttctgat gtggggatac gcgaccgaaa atggcggttg
     9961 tttcagctct ggcaattagt tcttcgtcgt caactttgga acaatcgata tagctatcgt
    10021 agtcagcaaa tccagcttcc ttagcaatgt gtgagaccgt cacaggattg tcaccagaga
    10081 ttatttttag tgtcacttct tgcgagcgaa gataggccag tgtttctgcg gcgtcttctc
    10141 ggatagggtc agcaatttct aatagagcta gaggttcaat attctcaggt agctgatttt
    10201 gagaagaagg aagggactgt tggctaagcg caagaatcag gacacgggaa ccacgagcct
    10261 gtgcctcaga aacagaagga ggattttgtg ttagtaacat ttctggtgcc cctagaaaaa
    10321 tgcgaccaat gttttcgatt gtcattgctc cccattttct atcgctagaa aatggaatga
    10381 tgtgactagc cttatagtgg tgctctaaat caccatattc ttttcgaatg gcctgagctg
    10441 ttgaattagt atcctcactt gtctggatat aggtagcgag tatctgttgg atagtgtcaa
    10501 gtgaataatg gttggttaag gggagcaggt tttcgacggt cattttcccc tgagtaatcg
    10561 ttccggtctt atctaaacaa agaacatcaa ctcgggcaag tgtttcgacg gaatacattt
    10621 cttgtacgag gacatttttc attcccagtt tgataacagc agttaagaga gaagtgatgg
    10681 tcagcagagc aattcccttt ggtaacatac ctagtagggc agtagagcta gtaataactg
    10741 agtcttttaa gggaagaagt ttgatgaaaa atgcttctag aaaaagagca agtccgaatg
    10801 gaatgataat ttttcctgta aatttagcaa ttttatccat attgtaaaga atacgagaga
    10861 cgataggttt gtgagttttc gcctcaagca tgagcttatt ggcatagttt tccgcgccaa
    10921 catggatgac ttttgcataa atctgtccgc taactagata gctaccagac aataattcag
    10981 ccccagtatt tttcacaatc aagtcgcttt caccggttaa catggcctcg tttgcctcgg
    11041 ctataccttc taaaacaata gcatcactag gaacttgttc gccagcagac agcaagagaa
    11101 catcatctaa aacaatatct tctggtgcaa gagagagtgt cttactgtca cgaacaactc
    11161 ggataaaatc cttgttcatc aggttgagtt tgtcaatcat tcgtcgtgct cgccattctg
    11221 tcagcattcc tgaaacagcg ttgaggacaa taactccgaa gaagaaaagg ttggaccatg
    11281 cctgaacagc tagtaaggct aagaaaatgg caaaattgag tgcgttaaaa gatgtaaaca
    11341 catttcgtct gaagatttcc caattactag cactggtctt tgtcttaaaa tgattggttt
    11401 gctggttttg aatacgttct tgtacttcct tggttgataa accttttatt tgtttgttca
    11461 ttattttatc tttctttttc tagtatatag aatacatctc atacttattg taacatatt
//
LOCUS       DASGBY010000062        11104 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.062, whole genome shotgun sequence.
ACCESSION   DASGBY010000062 DASGBY010000000
VERSION     DASGBY010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11104
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.062"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(173..1324)
                     /gene="recA"
                     /locus_tag="U1396_001229"
     CDS             complement(173..1324)
                     /gene="recA"
                     /locus_tag="U1396_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEM5342423.1"
                     /translation="MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLG
                     ERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGG
                     IAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
                     AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG
                     NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEA
                     VVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIF
                     DEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED"
     gene            complement(1376..2557)
                     /locus_tag="U1396_001230"
     CDS             complement(1376..2557)
                     /locus_tag="U1396_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEM5342424.1"
                     /translation="MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGD
                     NEQRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQILATFLGRNLVFDELAMAKLDRF
                     FASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
                     FSESLLPLLSQSQQQLYSRILRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTL
                     RLSTKATSQEEANLRLNQLEEEILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIA
                     IVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEADCIRQELQADLGLA
                     VSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNT
                     L"
     gene            complement(2594..3163)
                     /locus_tag="U1396_001231"
     CDS             complement(2594..3163)
                     /locus_tag="U1396_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEM5342425.1"
                     /translation="MSRCAWVNLNNPLYIAYHDEEWGKSLHDEQSLFELLCLESYQAG
                     LSWEIVLNKRQAFRSAFFNYDIQKVAAMTDSELDSLLTNPDIIRHKAKLYATRANAQA
                     FLRVQEEFGTFDTYLWSWVDFTPLDNPIKSFRELPTKSELSERLSKDLKKRGFKFVGP
                     VCIYSYLQAAGLLNEHEETCEIGKKLRTN"
     gene            complement(3417..4007)
                     /gene="ruvA"
                     /locus_tag="U1396_001232"
     CDS             complement(3417..4007)
                     /gene="ruvA"
                     /locus_tag="U1396_001232"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEM5342426.1"
                     /translation="MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGKVQQEV
                     TVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIE
                     QKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
                     ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK"
     gene            complement(4046..5983)
                     /gene="mutL"
                     /locus_tag="U1396_001233"
     CDS             complement(4046..5983)
                     /gene="mutL"
                     /locus_tag="U1396_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEM5342427.1"
                     /translation="MSHIIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIE
                     ISVEEAGLKMIQITDNGEGIAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPS
                     IASVSHMIIETATADSAHGLHLEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKY
                     VRSQQAELSHIVDVVNRLSLAHPEMAFALVNEGRELIRTAGTGKLRQAISGIYGIASA
                     KKMVEIEAEDLDFQISGYVSLPELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKL
                     MVGRFPLAVISIEIDPYLADVNVHPTKQEVRISKEKELMTLIREAISQALKEQDLIPD
                     ALENLAQSSTRPKVKAEQGTLPLREPKIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEI
                     VESPAENKPTSVQFAERQSVESEDQEHPNLSAKELAKLADKLDREATSTFPELEYFGQ
                     MHGTYLFAQGKTGLYIIDQHAAQERVKYEYYREKIGQVDNSAQQLLVPYIFEFPQNDA
                     LDLVHKMDALRQVGVNLEEYGSNQFILREHPIWMKEEEIESGIYEMCDMLLLTDQVSI
                     KQYRAELAIMMSCKRSIKANHALDDYSARDLLRQLSYCQNPYNCPHGRPVLVHFSKSD
                     MEKMFRRIQENHTSLRELGKY"
     gene            complement(6101..7624)
                     /locus_tag="U1396_001234"
     CDS             complement(6101..7624)
                     /locus_tag="U1396_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol oxidase"
                     /protein_id="HEM5342428.1"
                     /translation="MTELDVVSDVVTHPEETYRRSRRASRRQQVQLNGEFHERVLKTK
                     YWPALVWSLVLSVFSVANPLLMPFATNMQTQNLYAGMAMANGQIPYGDFFGTSGLLFY
                     LLAFLGHLGGTFIIFGILQFIALLIAGVYFYKVVAYFSQSEHLATSSSHWFYVFIFAL
                     GFGGMYAEMFALPFLLTSVWFLVRYFENAVRDEAFILYGIDAALVFLIYPKSLILWLV
                     AGLVLFIFNIQHRQVTRGIYQLLATIFGFLLILYAVGYYAFEAQILGTAIQQTFLYNL
                     QLDFHHSYLYLALAIVSVFLLLSGFFKSFIQMVFSFKQGRHTYIKVLLLLTFLVQCVF
                     IIGNANFQWSQLILLLPYGFAMSVVYLRDEDVEDYRGYLRRQFFLPLAICLGIIAQPA
                     YLYLVQGDLRTDREQVANYIGEQTKDSDKIYVWDNSASIYLSSQRLSAATITTAEPYL
                     NTDDNKNSLMYNINKNEAKFVVVNKNLPILDEIKTNLESQYQSVQTTDYFTIYQKNE"
     gene            complement(7793..9034)
                     /locus_tag="U1396_001235"
     CDS             complement(7793..9034)
                     /locus_tag="U1396_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM5342429.1"
                     /translation="MLENWLNTKQGQVFHYKMEKIEYALELLGNPQFAVPVIHVAGTN
                     GKGSTIAFMRQLFQTHGLRVGSFVSPHMVSVHDRICIDSQPISDHDFQHYLQKVYDLE
                     QEVATRYEPFRYFEVMVLIMFLYFEAQQPDVALVEVGIGGLLDTTNVVAPALSVITSI
                     GMDHQDLLGSTLGEIAEQKAGIIKENVPVVLGPLCPETTAICRHIAQDKQASVYQFGQ
                     EFTYKAGQFSNADLELSELVLGLAGHHQEENAAVALQTFLLYMTNIQKDIQPQLIQQA
                     LAQTSWPGRLELVAQEPKIYLDGAHNVPAIERLIEFIQVQEEPVTILFSALRRKDFQE
                     MLELLDEKLPHTALVLTSFAYDGALSEENRQGRDYVENYRQFIEAWQSSKQGILIVTG
                     SLYFISEVRRIFKNEYLFANK"
     gene            complement(9231..9622)
                     /locus_tag="U1396_001236"
                     /pseudo
     CDS             complement(9231..9622)
                     /locus_tag="U1396_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936152.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(9672..10220)
                     /locus_tag="U1396_001237"
     CDS             complement(9672..10220)
                     /locus_tag="U1396_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342430.1"
                     /translation="MTLNTFSDTANTFTFNYTFKDHDTAQVAGHALMGYMTGTFEQPG
                     IEVYYDNDKVGGDYNRLAVEYVADTELTETFRRICDSFQGYYNDPEAETDVEDQYRLE
                     RVEQLKQSETFDSLLEKVVIYELELLDYAERLLSDDPIPTDTEMAYMTLNLIGGKGVG
                     LFKSLDEDNEYSGLAYYNAEAE"
     gene            complement(10298..10756)
                     /locus_tag="U1396_001238"
     CDS             complement(10298..10756)
                     /locus_tag="U1396_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342431.1"
                     /translation="MKEQEFFEQAEKELEELNQHRADFMTMDFKELNNADYINFLNIG
                     NRIFSEDTTLNVYELYKHPDTRAKCFATIAKIAYHVNNMFQTEERMRTMIDSLELHFQ
                     NMVKKLVHQTDSDKLAELLLEIKKDNPNMTAEQESQFIRDIAVSGLLAMQ"
     gene            complement(10769..>11104)
                     /locus_tag="U1396_001239"
     CDS             complement(10769..>11104)
                     /locus_tag="U1396_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain protein"
                     /protein_id="HEM5342432.1"
                     /translation="VDNKKTATDTNIYDYYQQRIGSLDGYQYEKLKDYLDIDKLEPEL
                     VKRAIDRGADNSKRNFGYINKILKNWAQNGIRTIAQQDEEQRQFVDSKANKQKSNDWV
                     PDPNYPPPY"
BASE COUNT         3082 a         2540 c         2092 g         3390 t
ORIGIN      
        1 ggtctgcaga cctatttttt aaaaaaactt taaattttgg gataaaaatt cggtttttat
       61 tagaaaaaag tctggaatct ccagactttt tcgttcttat actaaacaac ttcgtacaca
      121 cctataacag atatgcacaa atagttcaat attaaatcta ttttgttagg aattaatctt
      181 ctaattcaat accgccatca agatctagga taacatcttg gatttcttcc gcaacaacag
      241 gagcttcttc ggtcgcaact tcttcaactc catctgcttc aatcaagcca taatgaacac
      301 gtatcttgcg gtcaatttca tcaaagattg ctggattatc tgctaagaat ttcttagcat
      361 tttcagaacc ttggccaatt ttttctccat tatatgaata ccaagcacct gctttttgga
      421 tgatgccgag gttactacca atctcaatca attcacctgt gcgagaaatt ccttcaccgt
      481 acatgatttc aacaacagct tctttaaatg gtggcgccac cttgttcttc acaatcttca
      541 ccttggtttc cttaccaacg ttttgatctt tcttgtcgcc tgtccctttg atttgtgtgt
      601 ttccacgaac atccatacgg acagatgcat agaatttaag cgcacgtcca ccaggtgttg
      661 tttcagggtt accaaacatg acaccgactt tttcacgcaa ctggttaatg aaaatggcta
      721 ccgtcttagt tttgttgatg gatgctccga gtttgcgcat agcctgactc atcatacgag
      781 cctgcagacc aacatgacta tcaccaatat cgccatcgat ttctgcacgt ggtacaaggg
      841 ctgcaaccga gtcaacaaca accaagtcaa ccgcaccaga gtcgatcagc ttgcctgcaa
      901 tttcaagacc ttgttcccct gagtctggct gtgacaatag taactcatca atattgacac
      961 caagagctgc tgcataggct ggatccaagg cgtgttccgc atcgataaag gcagcaatac
     1021 caccatcttt ctgggcttga gctactgcat gaagggcaac agttgtctta cctgaactct
     1081 ctggaccata aatctcaatg atacgacctt tcggatagcc acccgctcca agcgcaatgt
     1141 cgattgacaa actacctgag ctcatgactt gaactttttg ttcagcacgc tcaccaagac
     1201 gcataacagc acccttacca aaatcttttt caattgattt tagggcatca tccagcgctt
     1261 ttttacgctc atcgccaaat ttctttgtaa tatcttctaa tttttttcct ggtttcttag
     1321 ccaatgattt tctcctcttt tcttagtcaa actattatag caaatatctg ctatttcaca
     1381 aagtgtttcg tacaaaatcc caggcctgca gacaagcaag ctggcgaagg tattgccacg
     1441 aataaccacc taaatctatc tctttttggg aaatacccga ggtcgtagcc aaagtgagat
     1501 atacttttgc aagtacgttg tcctctgttg attccggttt gataagcaca gacacagcca
     1561 aacccaaatc agcttgcagc tcctgccgaa tgcagtcagc ttcctctgat agcctgcccg
     1621 attctgtccc tagctgaccg atgacttttc ctccgctaaa atacggctga tcagccaaag
     1681 ccaggcttaa ttcagcttgc aagagaccac ctgtcccctg ttcgacgata gcgatggttt
     1741 gtcttttctc cgccaaacga gtcgctaccg ttttgaccaa actattgtcc tctccgtagg
     1801 catagaaata gtctgccagt ttgtcatgtt gtaagatttc ttcttccaac tgattcaaac
     1861 gtagatttgc ctcttcttgg ctggtcgctt tggtggacaa gcgtaaagtc acctctccaa
     1921 cttttgcata aggagcaaga gttgggtctg tctgcttgtc gatcaagtcc gccaaaacag
     1981 tcaccaactg gctttcacca atgccaaaaa aacgtaggat acgcgaataa agttgctgct
     2041 gagattggga cagtaaaggt aagagactct cagaaaacat ggccttgagc tcacttggtg
     2101 ggccaggcaa aacaatatag gttacaccat cttgctcaat cataccacca acagctaaac
     2161 cagctggatt ctgtagcgcc tgacttccct ccacaatctg tgcctgacgt tcattatttg
     2221 gtgtacggac acgacctggg cgactggcaa agaaacggtc taattttgcc atagccaact
     2281 catcaaacac aagatttcta cctaagaagg tcgccaggat ctgcttggtc aagtcatcct
     2341 cagttggacc caatcctcca cagagaatga ccaggtcgct ccgctgacgg gctacttcca
     2401 gtacagacag aagcctctgt tcattatctc caacagctgt gtggaaatag acatcaattc
     2461 ccagctctgc acatttctcc gaaaggaact gagcattggt attaacgatt tgacctgtca
     2521 aaatctccgt cccaacggcg attagttctg ctttcatatt cctcctctgt ctagggtgcg
     2581 attgctcgct catctaatta gttcgtaatt tctttccaat ctcgcaagtt tcttcatgtt
     2641 cattcaacag acctgctgcc tgcaaataag aataaataca gacaggacct acaaacttga
     2701 aacctcgttt cttcaaatct ttggacaatc tttctgatag ttcacttttg gtcggtagct
     2761 ctcgaaagga cttaataggg ttgtcaagag gtgtaaagtc aacccaagac caaagatacg
     2821 tatcaaacgt gccgaattcc tcctgtactc gaagaaaggc ctgagcattg gcgcgggtag
     2881 cgtatagctt tgccttatga cgaatgatgt ctggattggt cagaaggcta tctaactcgc
     2941 tatctgtcat agccgcaacc ttttgaatat catagttgaa aaaagcagag cgaaaagcct
     3001 ggcgtttatt gagaacaatt tcccaggaaa gtcctgcttg gtaggattcc aagcaaagca
     3061 actcaaacaa agactgctca tcgtgaagtg acttgcccca ttcttcatca tggtaagcaa
     3121 tataaagtgg attatttaga ttaacccaag cacaacggga catagaaact ccttttcgtg
     3181 aataactaaa gtgcgaatca ggataaactg actgaaacac ggctacgata ctttgtaaaa
     3241 ttgtcaaact gaatcctaaa tatcaccgaa taacgcagtt gacatctggc aaaaggcttc
     3301 gtcaaaactc gccttttacc tagttgtcat tgcggaggtc tcacaacgaa atttctagca
     3361 aaatttctgt tcggccgtct attttgcttt gtatcgctta acgccttagt atcctattac
     3421 ttcatcagca ttttaagggc tgacttgatg tagttttcag cggtgtcatt ggtgccttca
     3481 aagaatttct tgattttctt gagttcggct gggcggtaac caagggcttc catggcttcc
     3541 atagcttcat caagagcgat attttcactg gatggtgcta cttgttgaac aggacccgct
     3601 tcttcgctca tgacaaactt gccttccagg tccaaaatca tctgctgggc tgttttcttg
     3661 ccaatcttcg gaaacttggt caggtaggta atgtttttct gctcaatagc acgaacaagt
     3721 ccatcattat catcaacagc aataatagcc agagccgttg ttggaccaat acctgatact
     3781 gaaatcagac tcagaaagac ggatttttca ttttctgtag caaatccgta gagcaaatga
     3841 gcatcttctc gaatcacttg atgagtatag accgtcactt cttgctggac ttttccagag
     3901 tatgcgtagg gattagcaac ctgcaagata tagcctactc cttgtgtttc taccacaata
     3961 tattttgcag ttatttttgt taaaattcct ttaatatagt cgtacatata cttcctttac
     4021 taatgcgtca actttttcaa ctatgttaat acttgcccaa ttctcgcaaa ctcgtgtgat
     4081 tttcctgaat gcgacggaac attttttcca tatccgattt gctaaaatgt actaagactg
     4141 ggcgaccgtg cgggcagtta tagggatttt ggcagtaaga caattgtctc aataaatcac
     4201 gcgccgaata atcatccaaa gcatggttgg ccttgattga ccgtttacaa gacatcatga
     4261 tagccagttc tgcccgatac tgcttgattg acacctgatc cgtcaagagc aacatgtcgc
     4321 acatctcata aatgccagac tcaatctcct cttccttcat ccaaatagga tgttcacgca
     4381 gaataaattg attagatcca tattcttcca agttgacacc aacttgacga agggcatcca
     4441 ttttgtggac taggtcaagg gcatcattct gcggaaattc aaaaatatag ggcaccaata
     4501 actgttgagc cgaattgtca acctgtccaa ttttctcacg gtagtattcg tatttgaccc
     4561 tctcttgtgc ggcatgctgg tcaatgatat aaagtcctgt cttaccttgc gcaaataaat
     4621 acgtcccatg catttgacca aaatattcta actctggaaa tgtcgaggtc gcttcccggt
     4681 ctaatttatc tgccagtttt gccaattctt ttgcacttag attaggatgc tcctgatctt
     4741 ctgattccac cgactgacgt tctgcaaatt gaacagatgt aggtttattt tcggcaggcg
     4801 actcaacaat ctcttgccta tcctcttcga gaggtttgac atcctcagcg accacgtctg
     4861 gttttaagaa gaagtcttgc ttaatcgtat cataatagat ttttggctct ctgagtggta
     4921 aggtgccttg ctctgctttt acttttggtc gagtacttga ctgagctaaa ttctcaagag
     4981 catctggtat caagtcctgc tctttaagcg cttgactaat cgcctctcga atcaaggtca
     5041 tgagttcttt ttccttggag atgcgaactt cctgcttggt cggatgcaca ttgacatcag
     5101 caagataggg gtcaatttct atagaaatca ctgccaacgg aaagcgtcca accatcaact
     5161 tactgccgta accttccaaa atcgctcgat tcagcaaaaa attcttgata tagcgaccat
     5221 tgatgaaaat ggaaatgtag ttgcggttgg cacgagtcaa ctctggcaag gaaacataac
     5281 ctgaaatctg aaaatccaga tcttctgcct caatttcaac catttttttg gcagaagcaa
     5341 tcccataaat ccctgaaatt gcctgacgaa gtttccctgt ccctgcagtt ctaattaatt
     5401 ctcgtccttc gtttactaag gcaaaagcca tttccggatg agctagactc aatcgattta
     5461 caacatcaac aatatgtgat aattcagcct gttgactgcg aacatatttg agacgagcag
     5521 gggtattgta aaataaatcc gaaacagtaa tctgcgtacc aactggacga ctaactggct
     5581 cctctttctc gatgacacca cctttggcct ccaaatgaag tccgtgtgca gagtctgccg
     5641 tagctgtctc aatgatcata tgactgacag aagcaatgga aggcagagct tctccacgaa
     5701 aaccgagggt gcgaatacga aacaaatccg attgattttt tatcttactg gtggcgtgac
     5761 ggcggagggc aagcgctact tcatcagggg caatcccctc accgttatcc gtaatttgaa
     5821 tcattttaag gccagcctct tcaacactaa tttcaatctg actagcccct gcgtcaatgg
     5881 aattttccac caactcctta accacactgg ctggtcgctc aatgacctca ccagccgcaa
     5941 tctggttggc tagtatttct ggtagttcaa taatatgtga catcatttct cctacatttc
     6001 tttaataatt tttcccgaat gcttattttt acattatacc acatatccac tttccctcct
     6061 tttcccagat aggctaaaga aaaaatgact gcctgagcaa tcattcattc ttttgataaa
     6121 tcgtaaagta atccgttgtc tgaacagact ggtactgtga ttctaaattt gtcttgattt
     6181 catctagaat tggcaaattc ttattgacga ctacaaattt tgcctcattt ttattgatgt
     6241 tatacatcaa gctattttta ttgtcgtcag tattcagata gggttctgct gtagtaatcg
     6301 ttgcggcaga taaacgttga cttgaaagat agatgcttgc gctattatcc caaacataaa
     6361 tcttatccga atctttcgtt tgttcaccaa tgtaattggc aacttgttca cggtcagttc
     6421 tcaaatctcc ctgtaccaaa taaagataag caggttgagc gataataccc aagcaaatag
     6481 ctaacggaag aaagaattga cgacgcaaat acccacgata atcttctaca tcctcatcac
     6541 gcaggtaaac gactgacatc gcaaaaccat acggtaaaag aagaatgagt tggctccatt
     6601 gaaaattagc attcccaata ataaagacac attgaactaa gaaagtcaat aataggagaa
     6661 ctttgatata ggtatgtctt ccttgtttga aagaaaacac catttggatg aaacttttaa
     6721 agaatccaga taagagtaaa aatacagaca caatcgccaa ggctaaatat agataggaat
     6781 ggtgaaagtc taactgtaag ttataaagga aagtttgttg aatagctgtc cccagaatct
     6841 gtgcctcaaa agcataataa cctaccgcat atagaatcag aagaaaacca aaaatggtcg
     6901 ctaataattg atagattcct cgagtaactt ggcggtgttg gatattaaaa ataaataaaa
     6961 ctagacctgc aactaaccaa aggattagac tttttgggta aattaaaaat accaatgccg
     7021 catcgattcc gtagaggata aatgcctcat cacgcactgc attttcaaaa tagcggacca
     7081 gaaaccacac actagtcaaa agaaatggaa gagcaaacat ttctgcatac atccctccaa
     7141 aaccaagtgc aaaaataaat acatagaacc aatgactaga acttgtcgct aggtgttctg
     7201 actgactaaa ataagctaca accttataga aatagactcc cgctatcagt aatgctataa
     7261 actggaggat tccaaagata atgaaagttc ctcccagatg acctaagaaa gcaagtaaat
     7321 agaataataa cccgcttgta ccaaaaaaat caccataagg gatttgtcca tttgccattg
     7381 ccatccctgc atataaattt tgagtttgca tattggttgc aaatggcatt agcagtggat
     7441 tggctacgct aaaaacactt aaaactaagc tccaaacaag agctggccaa tactttgtct
     7501 ttaatactct ttcatgaaat tcaccattca gttgcacttg ctgtctgcgt gatgctctac
     7561 gactacgccg ataagtttcc tcaggatgag taactacgtc cgagactaca tctaattctg
     7621 tcattttctt ctccttggat ttgctttcct tattatatca aaaagcactc ccgatgtcat
     7681 ttcctatcgg gagttctgga aatttttgca aactgttcta attggcgaaa ggtatggcgt
     7741 ttgttctctt gaaattcttt taaaaaggct actttttctg catgtgtcat acctatttat
     7801 tcgcaaaaag atattcattt ttaaaaatcc gacgaacttc tgagataaag tagagagagc
     7861 ctgtgacaat caaaatccct tgcttgctag attgccaagc ttctataaac tgccggtaat
     7921 tttcaacata atctcgtcct tgtcggtttt cctccgacaa ggcaccatca taagcaaagc
     7981 tggttaatac aagggcagta tgtggtaatt tttcgtccaa taattccagc atttcttgaa
     8041 agtccttgcg ccgaagggcc gaaaagagaa tggtgacagg ctcttcttga acctgaataa
     8101 attcaatcaa gcgttcgata gcggggacat tgtgggctcc atccaaatag atttttggct
     8161 cttgagcaac caattccaaa cgaccaggcc agctagtttg ggcaagggct tgttgaatca
     8221 actgaggttg aatgtctttt tgaatattgg tcatatagag tagaaaagtt tgtagggcta
     8281 cggccgcatt ctcttcttga tgatggcctg ccagacccag aactaattct gacagttcca
     8341 agtccgcatt gctgaactgt cctgctttat aggtgaattc ctgaccaaat tggtagacag
     8401 aggcttgttt gtcttgggca atgtggcgac agatggctgt ggtttctgga caaagtggtc
     8461 ctaagacgac aggcacgttt tccttgataa tccctgcttt ctgctctgct atttccccta
     8521 aagtcgagcc tagtaaatcc tgatggtcca tgccgatgga ggtgatgacg ctgagagccg
     8581 gtgccacgac gttggttgta tccaaaagcc ctccgatacc cacctctact agtgccacat
     8641 cgggttgttg agcttcgaaa tagaggaaca taatgagcac catgacctca aaataacgga
     8701 agggctcata gcgtgtagcg acttcctgct ccaagtcgta gactttctgt aaatagtgct
     8761 gaaaatcatg gtctgaaatg ggctggctgt caatacaaat cctgtcgtgt acactcacca
     8821 tgtgaggaga tacaaaacta ccgacacgca agccgtgagt ctgaaagagc tgacgcataa
     8881 aggcaatggt cgatcccttg ccattggttc cagcaacatg aatgaccgga actgcaaact
     8941 ggggattccc tagcagttct agggcatact caatcttttc catcttgtaa tgaaaaacct
     9001 gaccttgttt ggtgtttaac caattttcta acatagccac ctcctacata ctgtctagta
     9061 taacaaaaac atactaagat tagtagtgag gaaatctccg acgggagaaa gtactcacta
     9121 ctaatcttag tatgtttttg tgtaatcacg cgcttccata cgttcgtcta ttcgtcgttt
     9181 tagaaattgc cgaagtactt cacctagata accctctcaa ccaatagtat ttatcccgca
     9241 tcttcagcaa tgattgctcg taactcttca accgtcaaat cttcaaatgg attatgaggc
     9301 gcaacggata ccataccatc atgttcaagt tttgtcttag tcttaaattc ggcatctttc
     9361 cgttctaggt accattttga caagtccaca ttcccgtctt caatcgcttt tgatatattt
     9421 agtttagctc gtgttttaac acgttgctta agtagttctt ttcggtcagt aaactgtggg
     9481 tttttcttgc aataatcata cagggttggt ttgcatacaa acaagcttct tcatcgctta
     9541 gccctcttag aaatgcttcc tctaatttct ttaccgttcc ttgtgtcatt tttgtaggtc
     9601 taccgccttt atttttcatc atgttattcc tctctaattt tagcacaaaa agaggcggtt
     9661 gcctctctct gctattctgc ctcagcgttg taataagcaa gcccgctgta ttcgttatct
     9721 tcgtccagtg acttgaatag ccctacacct ttaccgccaa ttaagtttag tgtcatataa
     9781 gccatttccg tatctgtcgg aatagggtca tcacttagca aacgttccgc atagtccagc
     9841 aactccagct cataaatcac caccttttca agcaagctat caaaagtttc tgactgcttg
     9901 agttgttcca cgcgctccag gcggtactgg tcttcaacgt cggtttctgc ttcaggatcg
     9961 ttgtagtagc cttggaaact gtcacaaatc cgcctgaagg tttcagtaag ttcagtatct
    10021 gccacatatt ccaccgccaa acggttgtaa tctccgccca ctttatcatt atcataatac
    10081 acttcaatcc caggttgttc aaatgttcct gtcatgtagc ccataagcgc gtgccctgca
    10141 acttgtgcgg tgtcgtggtc tttgaatgtg tagttaaatg taaatgtgtt tgctgtgtct
    10201 gaaaatgtgt ttaatgtcat gtctttattc tccctagttg tttgataaat ttggaaaagt
    10261 ttccttattt cggtatcatc ggtcacggtg tcgcctccta ctgcattgct aatagtccac
    10321 taactgcaat atctcgtata aactggcttt cctgttctgc tgtcatattc ggattgtctt
    10381 tcttgatttc cagtagtagc tcagccagct tgtcactatc tgtctgatgt accagtttct
    10441 taaccatgtt ttgaaaatgc agttcaagac tatcaatcat ggtacgcata cgttcttctg
    10501 tctgaaacat gttgttaacg tgatatgcaa ttttggcaat ggtcgcaaag cattttgctc
    10561 tcgtgtctgg atgcttatat agttcgtaca cgttcaaagt ggtatcttcg gaaaaaatcc
    10621 ggtttccaat gttcaaaaag tttatatagt ctgcattatt gagttcttta aaatccatag
    10681 tcatgaagtc ggctctgtgc tggtttaatt cctctaactc cttttctgct tgctcaaaaa
    10741 attcttgttc tttcatttgc gcctctttct agtatggtgg tggatagttc gggtctggca
    10801 cccaatcgtt tgatttttgt ttatttgctt tactatcgac aaactgtctc tgctcctcgt
    10861 cttgctgagc tattgtccga atgccattct gtgcccaatt ttttagaatc ttattgatgt
    10921 agccaaagtt cctttttgag ttgtcagctc ctctatcaat tgccctcttg acaagttcag
    10981 gttcaagctt atcaatatct aagtaatctt ttagtttctc atactgataa ccgtccaagg
    11041 aaccaattct ttgttgataa taatcataaa tatttgtgtc agtagcagtt tttttattat
    11101 ctac
//
LOCUS       DASGBY010000063        10792 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.063, whole genome shotgun sequence.
ACCESSION   DASGBY010000063 DASGBY010000000
VERSION     DASGBY010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10792
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.063"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            22..1425
                     /locus_tag="U1396_001240"
     CDS             22..1425
                     /locus_tag="U1396_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000388528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HEM5342433.1"
                     /translation="MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGH
                     LSWDVDFLLAKILESIRLANTSYKILSIGIDTWGVDFGLIDKEGKLLSQPVHYRDERT
                     KGVLKEISEITELEKLYSETGNQLMEINTLFQLFKVRQEFPNSFYSTNKILLMPDLFN
                     YLLTGKFATEKSIASTTQLFDPRSQKWNQNILKLFELDSSLLPEIVSEGNVLGRIKEE
                     YGLGGIPVVNVCSHDTASAIVSVPKTGDSLFISSGTWSLVGVELSSPILCTESFSYGF
                     TNEVGKDGVITFLKNCTGLWIIEELRRSFERRGKAYSFGDIKTMVEKDKGNLPLIDTE
                     STEFATESDMYKTLTEYLEHRYGTREWTDGQLFKIVYESLAETYKKTIELLEELTHKV
                     YKRIYVIGGGARASYFNQMIADRTGKEVLTGSTEATAVGNIVVQLIAIGQLKGMEEAH
                     HVIEEFLQLESYYSQKN"
     gene            1536..2174
                     /locus_tag="U1396_001241"
     CDS             1536..2174
                     /locus_tag="U1396_001241"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001286141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HEM5342434.1"
                     /translation="MSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSG
                     IDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVL
                     ACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKEMEGRRAVLLANHGILAG
                     AQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMELMAEKFKTYGQRK"
     gene            2186..2626
                     /locus_tag="U1396_001242"
     CDS             2186..2626
                     /locus_tag="U1396_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000912112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RbsD/FucU family protein"
                     /protein_id="HEM5342435.1"
                     /translation="MLKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASCANKLIR
                     CDGVNIPDLLDSILYLMPLDGYVNSSIQFMNVVSGDDIPKIWGTYRQMIEGHGTDLKT
                     ITYLRREDFYERSKKAYAIVATGETSLYANIILKKGVVVERENV"
     gene            2619..3050
                     /locus_tag="U1396_001243"
     CDS             2619..3050
                     /locus_tag="U1396_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5342436.1"
                     /translation="MFNRGILVASHGNFASGSLMTAEMFVGETTNDRVRTLGLMPGEN
                     IVEFEHYFKNQVDELLDSNQEVIVLTDLIGGSPNNVALSQFLNLDSVDIVTGFNIPLL
                     VELISSYDSKINLEEIVHNAQNSLFNVKQQLNVEEEEDLCL"
     gene            3041..3511
                     /locus_tag="U1396_001244"
     CDS             3041..3511
                     /locus_tag="U1396_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000020992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5342437.1"
                     /translation="MSIEFVRIDDRLVHGQVVTTWLKKYDIEQVIIVNDRISEDKTRQ
                     SILKISAPVGLKIVFFSVKRFVEVLNSVPIKKRTMLIYTNPKDVYDSIVGNLKLEYLN
                     VGQMSKTEKNEKVTGGVALGEEDKYYFKKIVDKGTRVEIQMVPNDKVTMLEKFL"
     gene            3534..4307
                     /locus_tag="U1396_001245"
     CDS             3534..4307
                     /locus_tag="U1396_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000899624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5342438.1"
                     /translation="MPFTQALLVTLVGIIATIDYNGPLFMIHRPLVTSAMVGLVLGDF
                     TQGVLIGSALELTWLGVTGIGGYTPPDTISGAIIGTAFGILSGQGETAGIAIAVPIAV
                     ATQQLDVLAKTLDVYFVKKADNDAKNGDYSKIGFYHYSSLVLITLFKIVPIFLAIMLG
                     GEYVADLFAKVPPIVMQGLNSAGALLPSIGFGMLLNMMLKKNMWVFLLIGFICSVYGG
                     MSTIGISLVGIAVAYFYDMIGSKPQETTSNSDVEEDLDL"
     gene            4304..5104
                     /locus_tag="U1396_001246"
     CDS             4304..5104
                     /locus_tag="U1396_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5342439.1"
                     /translation="MMNNKVTKVELKKVFKRSFMYGSSWNYERMQNLGFLYTILPVLK
                     KLYPDKDLASPAMKRHLEFFNTHQTAAPFILGVTSAMEEQEGNEGADSITGIKVGLMG
                     PLAGLGDSLFWLTLVPICFSIGASYSKDGGALGIFIALMLFNVINIPVKYFGLKYGYT
                     KGSSLIQENNTKGTLNRITSMATALGLVLVGGLIPSMVGINFGLEFKQGELVISVQEM
                     ITKLIPGFIPMALTLLMCKLIRKGKNPVVLIFSVMAIGVILVVLGILK"
     gene            5162..7453
                     /locus_tag="U1396_001247"
     CDS             5162..7453
                     /locus_tag="U1396_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 95 protein"
                     /protein_id="HEM5342440.1"
                     /translation="MKLWYKKAASNWNEALPIGNGHLGGMIYGSAVKECIQLNDETIW
                     YRGKSDRNNPDSLLHLKKVREYLLDGEIQKAEELIKLTMFATPRDQSHYELLGELYIE
                     HIDIQPSALSLYERELDLDTAISNVIFEPNSCNLQIKREYFTSFNKNILCCRIVSSVQ
                     NTLNLNINLGRNKRFNDEVSKLDSSTILMSASAGGRKGVRFKVVCHSKVTDGEVNVLG
                     ETIVIRNATEVFLYLKSMTDYWGNLDISSLQGEFSSIDYFTEKDEHVKKYQEQFNRVD
                     FKLDYSKDCLSIPTNLLLEDTKKYSNYLTNLLFHYGRYLLISSSQPNGLPANLQGIWC
                     DELNPIWGSKYTININTQMNYWMVGPCDLPEVEYPLFDMLERMREPGRLTAKKMYGAR
                     GFTAHHNTDGFGDTAPQSHAMGAAIWVLTIPWLCTHIWEHYLYFQDERILREHFEMIK
                     EAFLFFEDYLFEVDGYLMTGPSVSPENKYRLKNGIEGNACLSSTIDNQILRYFCDSCI
                     GIAKQLVDNSDFISRVKELKKKLPKTKIGSNGQIQEWLEDYEEVEPGHRHISPLFGLY
                     PYNEIDIHKTPELAEAAKITINRRLSNANFLSSQDREQAINNWLVSGLHASTQTGWSA
                     VWLIHFFARLYQGEPAYNQINGLLHNATLGNLFLDHPPFQIDGNLGLVSGICELLVQS
                     HHNWLSLIPALPSAWSAGEVKGLRVRGGYKVSFAWKNRYITFLRLEGGDSGKAVKIKI
                     GNKTNERCIETIFNSEQVIELNL"
     gene            7557..8420
                     /locus_tag="U1396_001248"
                     /pseudo
     CDS             7557..8420
                     /locus_tag="U1396_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            8461..10227
                     /locus_tag="U1396_001249"
     CDS             8461..10227
                     /locus_tag="U1396_001249"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HEM5342441.1"
                     /translation="MIQHPRIGIRPTIDGRRQGVRESLEVQTMNMAKSVADLISSTLK
                     YPDGEPVECVISPSTIGRVPEATASHELFKKSNVCATITVTPCWCYGSETMDMSPDIP
                     HAIWGFNGTERPGAVYLAAVLASHAQKGIPAFGIYGRDVQEANDTDIPEDVKEKLLRY
                     ARAALATGLMRDTAYLSMGSVSMGIGGSIVNPDFFQEYLGMRNESVDMTEFTRRIDRG
                     IYDPEEFERAMVWVKEHIKEGVDLNREDLILSKEEKEKQWEFVVKMFMIGRDLMQGNP
                     RLAELGFEEEAVGHHALVAGFQGQRQWTDHFPNGDFMETFLNTQFDWNGIRKPFVFAT
                     ENDSLNGVSMLFNYLLTNTPQIFADVRTYWSPEAVKRVTGHTLEGNAADGFLHLINSG
                     SCTLDGTGQASRDGKPVIKPFWELEESEVQAMLDNTDFPPANREYFRGGGFSTRFLTK
                     GDMPVTMVRLNLLKGVGPVLQIAEGYTLELPEDVHHTLDNRTDPGWPTTWFAPRLTGK
                     GAFKSVYDVMNNWGANHGAITYGHIGADLITLASMLRIPVNMHNVPEEDIFRPKNWSL
                     FGTEDLESADYRACQLLGPLHK"
     gene            10363..>10792
                     /locus_tag="U1396_001250"
     CDS             10363..>10792
                     /locus_tag="U1396_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM5342442.1"
                     /translation="MATFYVPAVNLIGKGVVNEVGPYIKELGYKKALLVTDKFIEGSD
                     ILPKVLKPLDTEGIEYVIFSDVEPNPTCKNVTDGVAALEEHGCDFIISLGGGSPQDAA
                     SCISIIATNGGKPQDYEGLHKSAKKGLPVVAINTTAGTSAE"
BASE COUNT         3488 a         1583 c         2333 g         3388 t
ORIGIN      
        1 ggtattggag agggttaata aatggaagcg gttttagcaa tagatttagg tgcaacttct
       61 ggaagagcaa tcgttggtta cctttctgaa aataaactag taatggaaga aataaatcgc
      121 ttttctaatc tacctattag agtaaaaggg catttatctt gggatgttga ctttctacta
      181 gctaaaattc ttgaaagcat ccgcttggct aatactagtt acaagatttt atctatcggt
      241 attgatacat ggggtgttga ttttggactt attgataagg aaggtaagct gttatcacaa
      301 cctgttcatt atcgtgatga aagaacaaag ggagtgttaa aggaaatatc tgaaattact
      361 gaattagaaa aactgtattc agagacagga aatcagctta tggagattaa caccttgttc
      421 caactcttta aggtacgaca agaatttcct aattcgtttt atagtacgaa taagattctt
      481 ttaatgccag atttgtttaa ttatctgttg acaggtaagt ttgctacaga aaaaagtatt
      541 gcttcaacaa ctcaactatt tgatcctagg agtcaaaaat ggaatcagaa tattttaaaa
      601 ctatttgaat tagattcatc tttacttcct gaaattgttt cagaaggaaa tgtccttggt
      661 aggattaaag aggaatatgg tttaggcggt attcctgttg tgaatgtttg tagtcatgat
      721 acagctagtg cgattgtatc agttcctaag acgggagata gtttgtttat ttcatcagga
      781 acttggtctt tggttggagt ggagctttct tcacctattc tttgtaccga atcgtttagt
      841 tatggattta caaatgaagt cgggaaagat ggagtgatta catttctgaa gaattgtaca
      901 gggttgtgga tcatagagga actaagacgt tcatttgaac gaagagggaa agcctattct
      961 tttggtgata taaaaacaat ggtggagaaa gacaaaggaa atcttcctct gattgatact
     1021 gaatcaactg aatttgcaac agaatctgac atgtacaaga ctttgacaga atatctagag
     1081 catcgttatg gtactagaga gtggacagat ggacaactat ttaagatagt ttatgaaagt
     1141 ctagctgaaa cgtataagaa aacgatagag ttactagaag aactaactca taaggtttat
     1201 aagagaatat atgtgattgg aggaggtgct agagcaagtt actttaatca aatgattgct
     1261 gatagaactg gtaaagaggt tcttacaggt tcaactgagg ctacagcggt agggaatatt
     1321 gttgtgcagc tcatagcaat aggacaatta aaagggatgg aagaagctca ccatgttatt
     1381 gaagagtttc tacaattaga gagttattac tcccaaaaga attagaaaga ttgagagttt
     1441 gtaaatttgc ctccctcttc ttagcttttg tgcaagaaga ggggataatt ggtgaattgg
     1501 aaaaacttta gtgttttgat atgaggagga caaggatgtc agatgtaaaa caagaattaa
     1561 ttaaatatgg taagaagtta gtagaaacag atttgacgaa aggaacaggt ggaaatctca
     1621 gcgttttcga tcgtgaaaaa caattgatgg caattacccc gtcgggtatt gatttctttg
     1681 aaatcaaaga atccgatatt gtagtgatgg acattaatgg aaatgttgta gagggagaac
     1741 gcttaccatc tagcgagtgg tatatgcact tgattcaata tcaaactcgt gatgatatcg
     1801 atgcaattat ccatgctcat acaacttatg caacagtatt agcttgtctc agagaaccac
     1861 ttccagcgag tcattatatg attgcagtgg cagggaaaga tgttcgggta gctgagtatg
     1921 caacatatgg tacgaaagaa ttagctgtta atgcagctaa agaaatggaa ggtcgtagag
     1981 cagttttact agcgaatcat ggaattttag caggtgcaca aaatttattg aatgcattta
     2041 atattgttga agaagttgaa tattgtgcaa aaatttattg tttagctaag aattttggag
     2101 agccagtagt tcttcctgat gaggagatgg agttaatggc agaaaaattt aaaacatacg
     2161 gtcagagaaa atagggagga tattaatgtt aaaacatata ccgaaaaata tttctccaga
     2221 tttattgaag actttaatgg aaatgggaca tggagatgaa atagtattag ctgacgcgaa
     2281 ttatccttct gcctcatgtg caaataagct aattcgttgt gatggtgtaa atattcctga
     2341 tttattagat tctattctgt atttaatgcc attagatggt tacgtcaata gttcaattca
     2401 atttatgaac gttgtttcgg gggatgatat tcctaagata tggggtacct atagacagat
     2461 gattgaaggt catggtacag atcttaaaac gattacttat cttagaagag aagactttta
     2521 tgagcgtagt aagaaagctt atgctattgt tgctacagga gaaacttcac tttatgctaa
     2581 tattatcctt aagaaaggag tagttgttga aagagaaaat gtttaataga ggaattttag
     2641 ttgctagtca tggtaatttt gctagcggat ctctcatgac cgcagaaatg tttgttggtg
     2701 agacaacaaa tgatagagtt aggacattag gtttgatgcc tggagagaat attgtagagt
     2761 ttgagcatta ttttaaaaat caagtggatg aactgttaga ctcaaatcaa gaggttatcg
     2821 ttttgactga cttgattgga ggaagcccta ataatgtggc tttgtcacag tttttaaatt
     2881 tggattcagt tgatattgta acaggtttta atattcctct cctagtggaa ttaatatcaa
     2941 gttatgattc aaaaatcaat ttagaagaaa ttgttcacaa tgctcaaaat agtttgttta
     3001 atgttaaaca acaacttaac gtagaggagg aagaggattt atgtctatag agtttgttcg
     3061 tattgatgac cgtctggtac atggtcaagt tgtaactacg tggctaaaaa agtatgatat
     3121 tgagcaagtt atcattgtta atgatcgcat ctcagaagat aaaacacgac aatctatttt
     3181 aaagatttct gcaccggtag gtttaaaaat tgttttcttt agtgtaaaac ggtttgtgga
     3241 agttttaaac tctgtgccaa taaaaaagag aacaatgttg atatatacca atccaaaaga
     3301 tgtgtatgac tctattgtgg gaaatttaaa attggagtac ctcaatgtag gacagatgag
     3361 taaaacggag aaaaatgaaa aggtaactgg aggtgtagct ctaggtgaag aagacaaata
     3421 ttattttaag aaaatagttg ataagggaac gagagttgaa attcaaatgg ttcccaatga
     3481 taaagttaca atgttggaaa aatttttata aataatttaa ggaggtacag tatatgccat
     3541 tcacacaagc attactggtg acattagttg ggattattgc cactattgac tataatggac
     3601 cgttatttat gattcaccgt ccgttagtta caagtgcaat ggttggctta gtcttaggag
     3661 atttcaccca aggtgttctt attggttcag ctcttgaatt aacttggctc ggtgtaacag
     3721 gtattggagg ctacactcca ccagatacta tttcaggtgc gattattggt actgcatttg
     3781 gtattttatc tggacaagga gaaactgctg gtatcgctat agcggttcca attgcagttg
     3841 ctacccaaca gttggatgtt cttgcaaaaa ctttagatgt ttattttgtg aaaaaagctg
     3901 ataatgatgc taaaaacgga gattactcaa agattggttt ttatcattat tcaagtttgg
     3961 ttttaatcac gttgtttaaa attgtgccaa ttttcctagc tattatgctt ggaggggaat
     4021 atgtggcaga cttgtttgct aaggttccac caatcgttat gcagggactt aactctgcag
     4081 gtgctttact accttcaatt ggttttggta tgcttttaaa tatgatgctc aagaaaaata
     4141 tgtgggtatt cttgttgatt ggattcattt gttctgtgta tggaggaatg tcaaccattg
     4201 ggatctcact agttggtatt gcggtagcat acttctacga tatgattgga agtaaaccac
     4261 aagaaacaac ttcaaatagt gatgttgagg aggatcttga tctatgatga ataataaagt
     4321 aactaaagtt gaacttaaaa aagttttcaa acgaagtttt atgtatggtt cttcatggaa
     4381 ctatgagaga atgcagaacc taggttttct atatacaatt cttccagtat tgaaaaaact
     4441 atatccagac aaagatttgg cttctcctgc aatgaaacgt caccttgagt ttttcaatac
     4501 tcatcaaaca gcggcaccat ttattcttgg agttacttcc gctatggaag aacaagaagg
     4561 aaatgaaggt gcagattcaa ttactggtat taaagttggc ttgatggggc cactagctgg
     4621 cctaggagat agtttgttct ggttgacact agttcctatc tgttttagta ttggtgcgtc
     4681 ttattctaaa gacggcggtg ctttaggtat ctttatcgcc ttaatgttgt ttaatgttat
     4741 taatattcct gttaaatatt tcggtttgaa atatggctat actaagggtt ctagtcttat
     4801 ccaagaaaat aatacaaaag ggacattgaa tcgcattacg agtatggcaa cagcattagg
     4861 tctagtacta gttggtggtt tgattccatc aatggttggt attaattttg gattagaatt
     4921 taagcaggga gaacttgtta tttctgttca agaaatgatt acaaaattaa tcccaggatt
     4981 tatccctatg gctttaactt tattaatgtg taaattaatt agaaaaggaa agaatccggt
     5041 tgtactaatc tttagtgtta tggctattgg agttatccta gttgttttag gaattttgaa
     5101 gtagtagaaa gtgtggaggt ggtatttggg atatcacccc attttggaag agaggtaaag
     5161 agtgaaatta tggtataaga aagctgcctc aaattggaat gaagccttgc cgattgggaa
     5221 cggtcattta ggtggtatga tttatggttc agctgtaaaa gaatgtattc aactaaatga
     5281 tgagactatt tggtatagag gaaagtcaga tagaaataat ccagactcac tattgcatct
     5341 taaaaaagtt cgggaatacc ttttagatgg agaaattcag aaagccgaag aattgataaa
     5401 attaacaatg tttgctactc caagagatca aagccactat gaattactgg gagaacttta
     5461 cattgagcat atagatattc agccttctgc tctttcattg tatgaaagag agctagattt
     5521 agatacagct atttcgaatg ttatatttga accaaatagt tgtaatttac aaataaaaag
     5581 agaatatttt acgagtttta ataagaatat tttatgttgc cgtatagtgt catcagtcca
     5641 aaacacatta aatttaaaca ttaatctggg tagaaataaa cggtttaatg atgaagtatc
     5701 taaactggat tcaagtacaa ttttaatgtc ggcctctgct ggaggtagaa aaggtgttcg
     5761 gtttaaagta gtatgtcatt ctaaagttac ggatggtgaa gtaaatgtat tgggagagac
     5821 aatagttatt cggaatgcta cagaggtatt tctttacctc aaatcaatga cggattattg
     5881 gggaaatcta gatatttctt ctcttcaggg agaatttagt agtattgatt actttacaga
     5941 aaaagacgaa catgtaaaaa aatatcagga acaatttaat agagttgatt ttaaactaga
     6001 ctatagtaaa gattgtctta gcattccaac gaatctactt cttgaagaca ctaaaaagta
     6061 tagtaactac ttgactaact tgttatttca ttatggaaga tatctgttaa tatcgtctag
     6121 tcaaccaaat ggtttacctg ccaatcttca aggaatatgg tgtgatgaat taaatccaat
     6181 ttggggttct aaatatacga ttaatatcaa tactcaaatg aattattgga tggtaggtcc
     6241 atgtgattta ccagaagtag aatatccatt atttgatatg ctcgaaagaa tgagagaacc
     6301 gggaagacta accgctaaga aaatgtatgg agctagaggt tttacagcac atcataatac
     6361 ggatggtttt ggcgatacgg ctccccaatc tcatgccatg ggggctgcaa tttgggtatt
     6421 aactattcca tggttatgta ctcatatttg ggaacactat ttatatttcc aagatgagcg
     6481 tatccttagg gaacattttg aaatgataaa agaagcattt cttttctttg aagattattt
     6541 atttgaggtg gatggctact tgatgacagg tccaagtgtc tcaccggaaa ataaatatcg
     6601 cttaaaaaat ggtattgaag gaaatgcttg tctatcatct acaattgata atcaaattct
     6661 aagatatttt tgtgattcat gtattggtat tgcaaaacaa ttagtagaca attcggattt
     6721 tattagtcgt gtgaaggagt taaaaaagaa attacctaaa acaaaaatag gtagtaatgg
     6781 gcaaatacaa gaatggctag aggattatga agaagtagag ccaggtcaca gacacatttc
     6841 acctctattt gggctttatc cttataatga gattgatatt cataaaactc ctgaattagc
     6901 agaagcagct aaaatcacta taaataggag attatcaaat gctaactttt tatcttcaca
     6961 ggatagggaa caagcgatta ataattggtt agtaagtggt ttgcatgcta gtacacaaac
     7021 aggttggagc gctgtatggt tgattcattt ttttgcgaga ctatatcaag gtgaacctgc
     7081 ttataaccag attaatggtt tgttacataa tgcgactctt gggaatttat ttcttgacca
     7141 tccaccattt caaattgatg gtaatttagg tttggtgagc ggaatttgtg aattattagt
     7201 acagagccat cataattggt tatcacttat tccagcttta ccttctgcat ggtcagcagg
     7261 agaagtgaaa gggctcagag taagaggagg atataaggta tcgtttgctt ggaaaaatag
     7321 gtatataact tttctgagat tagagggggg agattcaggt aaagcagtaa aaataaaaat
     7381 tggtaataaa acgaatgagc gatgtattga gacaatattt aattcagaac aagttatcga
     7441 attaaatttg taggtataag caaataatac tcgtggtgct agttcatttg aaactacaat
     7501 aaaaagccca aatggactat actgtaagtg acgaaacata caggaggtta gtccaaatga
     7561 gctacttaca gtatactgct aaatctcatc atttgcaatg gagtgtacgc caattatctc
     7621 aaatttgtca tcacttttac cacaactatt gcccggattc ctttaaacat cggcgtaatg
     7681 ttggcttagt taaagtttca gatgaagcgc tccttgtctt acttttgata caagcagaac
     7741 tagggataac atcacaacgc catttctaca ccatctgcca cctcttccct tgcggtcagt
     7801 tactagaaag aagtcgtttc aatcgtcggt ctaaacaatt gatttggctc gtccaattaa
     7861 tccgaaaagc tatgagcgaa atgcttccat ctgataaact agccattata gatagttttc
     7921 ctttgtcact ttgccaaccg gttcgcaacc acagagcaac tatttttaat ggattcgccg
     7981 atattggcta caacgcctct aaacatcttt ggttctacgg cttcaaagtt catatgctgg
     8041 tgaccttatc aggttatatt ctgaactatg ttgtcacgcc agcctctgtc catgatatca
     8101 aggtggttat gagctattag agggggtgta agcaatcggt tatcttaggt gatctaggct
     8161 acctaagcag tgaactcaaa aaggacttag agcaagaagg ttaccatcta tggacgccgt
     8221 ttcgtaaaaa catgactggg tccgaagaac ataacaattg gaaagtgatg gccttgagac
     8281 gaactattga aacacgtttt tctgaactgt gtcgtctctt tgacatcgaa catacattag
     8341 ctagaggtct agctggacta cagttacgaa tggaacaaat tattctagct cataacttac
     8401 gctattttga aatgaactag caccacgggt aaataatata taaaacaaga ggaaagtatt
     8461 atgatacaac atccacgtat tggtattcgt ccgactattg atggtcgtcg tcaaggtgta
     8521 cgagaatcac ttgaagtaca gacaatgaac atggctaaaa gtgtggcaga tcttatttca
     8581 agtacattga aatatccaga tggagaacct gtggaatgcg tgatttctcc atctaccatt
     8641 ggtcgtgttc cagaggctac agcttcacat gagttgttca aaaaatcaaa tgtttgtgca
     8701 acaattacag tcacaccatg ctggtgttat ggtagtgaaa ctatggatat gtctccagac
     8761 attcctcatg ctatttgggg atttaatggg acagaacgtc caggagctgt ctatcttgca
     8821 gctgttctag cttcacatgc tcaaaaaggt attccagcgt ttgggattta tggaagagat
     8881 gttcaggaag ctaatgatac agatattcca gaagatgtca aagaaaaact tttacgttat
     8941 gcccgtgcag ctcttgcaac tggtttgatg cgagatactg cttacctatc aatgggtagt
     9001 gtatcaatgg ggattggtgg ttctattgtg aatccagatt tcttccaaga atacctagga
     9061 atgagaaatg agtctgtaga tatgacggaa tttacacgtc gtattgaccg tggtatttat
     9121 gacccagaag agttcgaacg tgctatggtt tgggtaaaag aacatattaa agaaggtgtt
     9181 gacctaaatc gtgaagattt gattctctct aaagaagaga aagaaaaaca atgggaattt
     9241 gtggtaaaaa tgttcatgat tggtcgagat cttatgcagg ggaatcctcg tttagcagaa
     9301 cttggttttg aggaagaagc agttggtcac catgctttag tagctggttt tcaaggtcaa
     9361 cgccagtgga cagaccattt cccaaatgga gattttatgg aaactttcct caatactcag
     9421 tttgactgga atggtattcg taaaccattt gtatttgcaa cagagaatga ttcactaaat
     9481 ggtgtgtcta tgctctttaa ttacttattg acgaataccc cacaaatatt tgctgacgtg
     9541 cgtacttatt ggagtccaga ggctgttaaa cgtgtaacag gacatactct agaaggtaat
     9601 gccgcagatg gcttcttaca tttgattaac tctggctctt gtacattaga tggtactggg
     9661 caagctagtc gtgatggaaa acctgttatt aaaccattct gggagttgga agaaagtgaa
     9721 gtgcaggcta tgcttgataa cacagacttc ccaccagcaa accgcgaata cttccgtgga
     9781 ggaggattct caactcgctt cttgacgaag ggggatatgc cagtaacaat ggtacgtctc
     9841 aatcttttaa aaggagttgg tccagtgcta caaattgcag aaggttacac acttgaactt
     9901 cctgaagatg ttcaccatac tttagataat cggacagatc caggatggcc aactacttgg
     9961 tttgctccac gtttgacagg aaaaggtgct tttaagtctg tatatgatgt catgaataat
    10021 tggggagcta atcacggagc gataacatat ggacacattg gtgcagactt gattactttg
    10081 gcttctatgt tgagaattcc tgtcaatatg cataatgtac ctgaggaaga tatctttaga
    10141 cctaaaaatt ggtctttatt tggaacagaa gatttagaat cagcggacta tcgtgcatgt
    10201 cagttgttgg gaccactaca taagtaaaac ttgtttgtat aggaggtgag cttacgtccc
    10261 tcctatactt ttaaaaaaca cttgttaatt atttcacaaa tgtatagcat agattttaaa
    10321 aataataata gaaaaagcgc gaaggcgtag gaggaaaatt atatggctac attttatgtt
    10381 ccggcagtca accttattgg aaaaggtgtt gtaaatgaag tgggtcctta tatcaaggaa
    10441 cttggctata aaaaggcact tttggtgaca gataagttta tcgaaggaag tgacattttg
    10501 cctaaggttt taaaaccgct agatacagaa ggaatcgaat atgtcatctt tagcgatgta
    10561 gagccaaacc ctacttgtaa gaatgtcaca gatggggtag ctgctttgga agaacatgga
    10621 tgtgatttta tcatcagtct tggtgggggt tctccacagg atgcagctag ttgtatttct
    10681 atcatagcta caaatggtgg aaaaccacag gattatgaag gacttcataa gtctgctaaa
    10741 aaaggcttgc cagttgtggc tatcaataca acggcaggaa cttctgcaga aa
//
LOCUS       DASGBY010000064        10680 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.064, whole genome shotgun sequence.
ACCESSION   DASGBY010000064 DASGBY010000000
VERSION     DASGBY010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10680
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.064"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(209..1084)
                     /locus_tag="U1396_001251"
     CDS             complement(209..1084)
                     /locus_tag="U1396_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5342443.1"
                     /translation="MKIDIRIPQAFPQLTVKEVLEDYFLIPRKIRHFLRTKKHVRVNG
                     ELINWQSPITAGDLLELTFDQEDYPEKSIPLGQADLVEELYQDEHLIIVNKPEGMKTH
                     GNEPTEIALLNHVSAYVGQTCYVVHRLDMETSGAILFAKNPFILPILNRLLEDKVIYR
                     DYLALCQGQLKETDWTITDKIGRDRHDRRKRMVDNRKGQAALTQVRLLKPLGKNSLVS
                     CRLQTGRTHQIRVHLAHHGHALIGDPLYSRVAAPRLMLHAQKLSLTHPLTLEEISVEA
                     RSESFEKARDRLKIT"
     gene            complement(1086..2054)
                     /locus_tag="U1396_001252"
     CDS             complement(1086..2054)
                     /locus_tag="U1396_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5342444.1"
                     /translation="MTQVYDITIIGGGPVGLFAAFYAHLRQAKVKIIDSLPQLGGQPA
                     ILYPEKAILDIPAFPSLTGQELTDNLLAQLAPFDTTICLNETLTAIEPGETITLTTNK
                     DCHQTKTLIIAMGGGAFKPRPLEIDGADSFDNVHSHVSNIQQYANKDIVVLGGGDSAV
                     DWSLAFEKIAKTTQIVHRRDNFRALEHSVEELKQSSVTIHTPFIPKGLSGENGRASSI
                     HFDKVKSEDKLTLSFDHLFVNYGFKSSVGTLKEWGLELNRHRIVVNSKQETSVPGIYA
                     IGDCCFYEGKVDLIATGLGEAPTAVNNAMNYINPNEKVQPKHSTSL"
     gene            2207..4420
                     /locus_tag="U1396_001253"
     CDS             2207..4420
                     /locus_tag="U1396_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5342445.1"
                     /translation="MDDLQHQPIEVPEDFQIDHDDRPSRRRRGNRGSVDKPRKKSRIP
                     EPIRKFWCRYQLTKILIILMVLTFLTVGGYLFFLAKTANVGDLQQALKATTIIYDKDG
                     AEAGTLSGQKGTYVELDAISDNLENAVIATEDRSFYKNSGINYQRTILAALTLGRSGG
                     GSTITQQLAKNAFLTQDQTISRKAREFFLALEINKKYSKQEILTMYLNNAYFGNGVWG
                     VEDASQKYFGIPASDLTLEQAAVIAGMLKGPEIYNPYYSLENAVNRRDTVLQNMVNAG
                     YIDQATADAGFQVDLASQLSDTYTGKQSNYSYPSYFDAVIAEAIERYGLKESDIINNG
                     YRIYTEMDQNSQASMQVIFNDETMFPTSSFDGTHAQAASVALDPRTGGVRALVGRVNS
                     SEDAVFRTFNFATQAKRSPGSTIKPLVAYAPAVAAGWSIDMALDNHTETYGDYTLHNY
                     DYSTSDTIPMYQALALSYNLPVAYIVNTLGIDKAFEYGQKFGLDMENVEKVLGVSIGS
                     GVETNPLQMAQAYATFANKGVMKDAHLITRIETASGKVLAEHRETSTKVIDRSVADKM
                     TAMMLGTYTNGTGVTADAANYYIAGKTGTTETSFDVNLVNDQWHIAYTPDLVISQWVG
                     FEQTDENHYIDSSSYWMAPSVFQTVANSILPYTAGTQFEVENAYAQNGIVEVAPDEAT
                     QTESSLGQEQVQEISDQAKNLIEQTKQNLIDAQLPERAKTLWDNITSWFGELSNP"
     gene            4454..4606
                     /gene="rpmG"
                     /locus_tag="U1396_001254"
     CDS             4454..4606
                     /gene="rpmG"
                     /locus_tag="U1396_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5342446.1"
                     /translation="MALKKASLACTVCGSRNYSISLSSNPKPTRLEVNKFCKHCGQYT
                     VHKETR"
     gene            4616..4792
                     /gene="secE"
                     /locus_tag="U1396_001255"
     CDS             4616..4792
                     /gene="secE"
                     /locus_tag="U1396_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEM5342447.1"
                     /translation="MKFIKDIIRILKDTSWPTRKQSWTDFVSVVEYTAFFVAVVYLFD
                     LILSRGIMSLINLF"
     gene            4902..5441
                     /gene="nusG"
                     /locus_tag="U1396_001256"
     CDS             4902..5441
                     /gene="nusG"
                     /locus_tag="U1396_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEM5342448.1"
                     /translation="MYDSFDKGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEI
                     PTQTVQVEKNGEVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKP
                     TPLLEEEIRQILVSMGQTVQEFDIDVKVGDTVRIIDGAFTDYTGKITEIDNNKVKMVI
                     SMFGNDTIAEVNLSQIAEL"
     gene            5583..10661
                     /locus_tag="U1396_001257"
     CDS             5583..10661
                     /locus_tag="U1396_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM5342449.1"
                     /translation="MKQKWSQIENKQRFSIKKLSVGVASVSIGFFITGVPMVQADTSG
                     EGLESTVAVATDMDSRQNSAVEKKEDGPLSDEPVKTEQVDEPVAEEGVVEEVVDTEAG
                     EESGLLTDQAATEIKTTAGKTTDESKEKEDISGKEASAPQTIPQESQLEPEEVTRGRY
                     ILQFSEENRNLVLDKLKKIDGVKIVHEYKEVLTGASVEVGKESLSDVKAITELTSLEE
                     SRRIRPTLHTAKQLVGALKASSKYQTDGRGMVIAVIDSGLDIKHKDMRLDDGVIPKIK
                     DITPSTTGTYTLKVPHGYNYVSGNDNLYDDTHEPHGMHIAGTLAGNATDEEVASKKGV
                     DGIAPNAQLLVYKIFSNDPKNYKAETEDAAYAAIEDAIKHGADVISLSVGYYDSGLPG
                     NAYYTIAKRAAEKGIIITAAIGNAGASSSDTSFDLHTNNALGAVDTATTVGVAATPAV
                     IAVGSARNTHLVQREFMLNGQSFGYYPIGYTTLTEGKYEFVDAGNGHWEEVQGLDLAG
                     KVAVIKKDKFDLKDAVRNLKFKDVAGIIVINTDQGWNKDYYRTHQLLVDDKTLLSYSS
                     IWGISLSGEDGRRLLEVANQSQGNAGLVLKPTIGMKKLIEVPTVSGFSSWGPTVNLEL
                     KPEIVAPGEDVYATLNDNRYGSMSGTSMASPIVAGASALLLPRIRQMTPPEGMTRMDL
                     LRIILMNTATPLVDVLDSSGHALENSPRQQGAGLLQIDRAFETDVILHHRLKGGVELK
                     EIGRETEFEVTLENLGNQQRSFAISAGKVLTSQDVPVDRIGRSGKVVKEIHATEIKGS
                     SIHLSEQSIQLGPKEKRTIRLKLDAGEAKDQFAEGYIYFKSLTDGQSDISIPYFGFVG
                     DWSKERIVDAPAWETSSKLKLTSVLSSYKHNKSGRYIELGREKIQDNQSPLNPDNIAI
                     QNQHSDSQIGNAFVRFALLRDITNYDLDIVKEATEDAPVLRRIDTGTMLSRVRYVDYF
                     ESLSEYFKLRTPIELHRWDGKVYDASNDENIPAPEGQYFFRLRVKNKENGAYQYTYLP
                     VKIDNQKPEIVAIDTNRLSSHRELVVTAKDNNKVWEVRANLNGEDLLVEKVVDDAGQL
                     HYHLKEVELPLDAKNHLRVEVMDIAGNVVAVEKDLMAPVIQFKNLEDLMAIRSKKTVE
                     IKANVSAQVSDVQANLDAQAVNYSLENGQLSLQIPEQSDGHHSFELILKDKYGNPIYT
                     KTLNYLVDNEKPTIDLDIEKDEEDEEVIQIGKNGRFTLKGKVSDNVSLPKNIKLYYSN
                     LDIGKGELKIIDVKEDGSFEQDFFKSDFPRAIMLTAVDEKGNKLKDLRINTSPESLDE
                     EEETEVPITVNNWLIDPIRFNKESLGRELDSELVDFKKQEDGTYLFTFEIEAETDQAH
                     SVRINGGEKRYFEDGKLTYPVTLIEEGNVVDISVYNEEDELTYTKKYQMLVDTENPVL
                     QLENEVLPLERQVVDSEEDEDEENQYAGVLLADADGHLTLTGSAKDNGIYWSLKINED
                     FVARGGFWRQYGNNEKAFRYELHSLKDGDTVKLDLSDSFGNALVKKYKVRLNDKEVSE
                     QVPEKDLHVEQSDKDQASSIPISKSEAHVPMPKEENSLASQTEFTEIALLTGDTIEDG
                     VEHLVRLTKHEEALGISDERIEVSVPHRELFERSGRGETSALAADTSGKLPQTGDSLG
                     SVFISALLGLFGGAMALGNLKRKE"
BASE COUNT         3197 a         1935 c         2634 g         2914 t
ORIGIN      
        1 aattgaagtt cgtaaaatat taattagtaa taaaaaaata atataattta ttattcatta
       61 actatttcaa ggtagtattc tttacaaatt ggaaatcaat agagatgttg tgtaagatat
      121 ctatgatggc tttgccctca tccgtaaaag aataaaaacg aacaggaatc cctcactagg
      181 tgtataatct tagtgaggga tttgaggttc atgtgatttt tagtctgtca cgcgcctttt
      241 caaaactctc cgaccttgct tctacactga tttcttctaa agtcagcggg tgggtcaggc
      301 tgagtttttg ggcgtggagc atgaggcggg gggctgcaac tcgactgtaa agtgggtcgc
      361 cgattagagc atgaccgtgg tgggctagat gaactcgaat ctggtgggtc cttcctgtct
      421 ggaggcgaca agagaccaaa ctatttttac caaggggctt caagaggcgg acctgggtaa
      481 gggctgcctg tcctttgcga ttatcgacca tccgctttct acggtcatgc ctgtcccgtc
      541 cgattttatc ggtaatggtc cagtctgtct cttttagctg gccttggcag agggctaggt
      601 agtcacggta gatgaccttg tcttccaaga gccgattgag aatgggtagg ataaaaggat
      661 ttttagcaaa gagaatggct ccgctggttt ccatatcgag cctgtggacc acatagcagg
      721 tctgtcccac ataggcagat acatggttga gtagggcgat ttccgtcggt tcattgccgt
      781 gggttttcat gccttctggc ttgttgacga taatgaggtg ctcatcttga tagagttcct
      841 ccaccaagtc cgcctgtcct agaggaatac ttttttcagg ataatcttcc tggtcaaagg
      901 tcaattctaa caagtcgcct gcggtaatcg ggctctgcca gttaatcagc tcaccattga
      961 cacggacgtg tttcttggtg cggaggaagt ggcggatttt tctgggaatg agaaaataat
     1021 cttccaagac ctccttgaca gtcagttgtg gaaaggcttg gggaatgcga atgtcaattt
     1081 tcatcttata ggctggtcga gtgcttgggt tgcacttttt cgtttggatt gatgtagttc
     1141 atggcattgt tgacagcggt tggggcttcc cccagtccag ttgcaatcag gtcaactttg
     1201 ccttcataga aacaacagtc accgatagca tagatgccag ggacagaggt ttcttgcttg
     1261 ctgttgacca cgatgcggtg gcgattgagc tccaatcccc attctttcag cgtgccgaca
     1321 gatgacttga aaccgtagtt gacaaagagg tggtcaaaag acagggtgag tttgtcctcg
     1381 ctcttaacct tgtcaaaatg aatgctagaa gccctgccat tttccccaga aagcccttta
     1441 gggataaaag gtgtgtgaat ggtgacgctg gactgcttga gttcttccac gctgtgctcg
     1501 agggctcgga aattatcacg acggtggaca atctgagtgg tcttagcgat tttttcaaag
     1561 gctagagacc agtcgaccgc agagtcacca ccacccaaga cgacgatgtc cttgttggca
     1621 tactgctgga tattagacac gtgggaatgg acgttgtcaa agctgtcagc accatcaatc
     1681 tccagcggac gtggcttgaa ggccccgcca cccatggcga taatcagggt cttggtctgg
     1741 tggcagtcct tgttggttgt tagggtaata gtttccccag gttcgatagc agtcagggtt
     1801 tcattgaggc agatggtggt gtcaaatgga gccagttggg caaggaggtt gtcggtcaac
     1861 tcctgtcccg tcaggcttgg aaaggccgga atgtctaaaa tggccttctc aggatagaga
     1921 atggcaggct ggccacccag ttggggcagg gagtcaatga ttttgacctt ggcttgacgg
     1981 aggtgggcat agaaagcggc gaataaaccg actggtccgc caccgatgat agtaatgtca
     2041 tatacttgtg tcatgggaat cctcttattt gttcagaatg accctatttt atcatatttt
     2101 tggaaaaaat tccctgtctg ttgtcacaag ttatcgcagg cttttttctg ctagttttta
     2161 ggaaatggtg tataatggta caaaattcac tagaaagagg taaagtatgg acgatttgca
     2221 acatcagccg attgaagttc cagaagattt ccaaattgat catgatgatc gacctagccg
     2281 tcgccgcagg ggaaatcgtg gctctgttga taaaccaagg aaaaaatcac gtattccgga
     2341 gccgattcgt aaattttggt gccgttatca actgactaaa attttaatca ttttaatggt
     2401 cctgacattt cttacggtag gtggctatct attcttcctt gcaaagacag ctaatgttgg
     2461 tgatttacaa caggcgctaa aagccacaac gattatttac gataaagatg gtgcggaagc
     2521 tgggacattg tctggtcaga aggggaccta tgtagagctg gatgctatct ctgataattt
     2581 agagaatgcc gttatcgcta cagaagatcg gagcttctac aaaaattcag gcattaatta
     2641 ccagcgtacc attttggctg ccttgacgtt aggtcggtct ggaggtggtt caactattac
     2701 ccagcaattg gcaaaaaatg cctttctaac tcaggatcag accatcagtc gaaaggctcg
     2761 agaattcttt ttggctctgg aaatcaataa aaagtacagc aagcaagaaa tcctgaccat
     2821 gtatctcaac aatgcttact ttggaaacgg ggtctgggga gtggaagatg caagccaaaa
     2881 gtacttcggt attccagcca gtgatcttac tcttgagcaa gcggccgtca tagcaggtat
     2941 gctcaaggga cctgagattt ataatcctta ttattctcta gaaaatgcag ttaatcgtcg
     3001 ggatacagtc ctgcaaaata tggtcaatgc tggttatatt gatcaggcga ctgcagatgc
     3061 aggtttccaa gtagacctag ccagtcagct ttcagatacc tatacaggga aacaaagcaa
     3121 ttattcctat ccatcctatt ttgatgctgt gattgctgag gcgattgagc gatacggact
     3181 aaaagaatca gacattatta ataacggcta taggatttac acagagatgg atcaaaattc
     3241 tcaagccagc atgcaggtga tttttaatga tgagactatg ttcccaacat caagttttga
     3301 tggtacccat gctcaggctg ccagcgtagc tcttgatcct aggactggtg gagttcgcgc
     3361 cttggttggt cgagttaaca gttcagagga tgcggttttt cggactttca actttgcgac
     3421 acaagccaag cgcagtcctg gttcaacaat caagcctctt gttgcctatg ctccagcagt
     3481 agcggcgggc tggtcgattg atatggctct ggataaccat acagaaacct acggcgatta
     3541 caccttacat aactatgatt attcgacttc tgataccatt ccaatgtatc aagctttggc
     3601 tctctcttac aatttaccag tagcttatat agtgaacacc ttggggattg acaaagcctt
     3661 cgagtatgga caaaagtttg gacttgatat ggaaaatgtc gagaaagttt tgggtgtttc
     3721 aattggttct ggagtggaga ctaatcctct gcaaatggcc caggcctacg ctacttttgc
     3781 gaataagggt gtgatgaagg atgcacacct catcactcgt attgaaacgg ctagtggaaa
     3841 ggttttggca gagcatcgcg aaacaagtac caaggtgatt gaccgctctg tcgcagataa
     3901 gatgacagca atgatgcttg gtacctatac caatggtacg ggagtgacag cagatgcggc
     3961 caattattat attgctggga aaacaggaac aaccgaaacg agttttgatg tcaatcttgt
     4021 caatgatcag tggcatattg cctacacacc tgatttggtc atcagtcagt gggttggttt
     4081 tgagcagaca gatgaaaatc attatataga tagcagtagc tactggatgg ctccgtcggt
     4141 cttccagact gtagccaatt caatcttgcc atatactgct ggaactcagt tcgaagtaga
     4201 aaatgcctat gcacaaaatg gtattgtaga agtagctcca gatgaagcta cgcaaactga
     4261 atcaagcctt ggtcaagaac aggtacaaga aatttcagat caggcgaaaa acttgattga
     4321 gcaaaccaaa caaaatctaa tcgatgccca gttaccagaa cgagcaaaaa ccttgtggga
     4381 taacattacg tcttggtttg gagagttgtc aaatccataa aaacatggta gaatgaaaag
     4441 gatggagggc tttatggcac taaaaaaagc aagcctagcc tgtactgttt gtggttctcg
     4501 aaactattca atcagccttt cgagcaatcc caagccaaca cggttagaag taaataaatt
     4561 ttgtaaacac tgtggacaat acactgttca caaggaaacc agataggagt cgcgcatgaa
     4621 atttatcaaa gacattatcc gcattttaaa agatacgtct tggccaactc gtaagcagag
     4681 ctggacggat ttcgtgtctg tagtggaata tactgccttt ttcgtagcgg tggtttacct
     4741 ctttgacttg attttgtcac gaggaatcat gagcttgatc aatcttttct agaaaatact
     4801 tgccatttgt aaaatggaag tgatataata aggaaaagcg aaagccttcg ggcttttttt
     4861 agcgtctaaa aattccgtgt ttccaaagaa aggaagtaac aatgtacgat agttttgata
     4921 aaggctggtt tgttttacag acctactcag gatatgaaaa taaagtgaag gaaaacttgc
     4981 tccaacgtgc tcacacttat aacatgttgg aaaacatcct tcgtgtagaa attccaactc
     5041 agactgttca ggttgaaaag aacggtgagg tcaaggaagt ggaagaaaac cgtttccctg
     5101 gttatgtttt ggttgagatg gttatgaccg atgaagcttg gtttgtggtt cgtaatacgc
     5161 caaatgttac aggtttcgtg ggttcacacg gtaaccgttc aaaaccaact ccacttttgg
     5221 aagaagaaat tcgtcaaatc ttggtgtcta tgggacaaac cgttcaagaa tttgatattg
     5281 atgtcaaagt tggcgacact gttcgtatca tcgacggtgc cttcacagac tacacaggta
     5341 aaattacaga aatcgacaac aacaaggtta aaatggttat ctctatgttt ggtaatgata
     5401 ccattgctga agttaatttg agccagattg ctgagttgta ataagttgtt aaagcgcagg
     5461 gaagcctgtg ctttttcttg tttttgaggg ctaattcaaa aaacttgcca aagatttaaa
     5521 aattttatag aattaagtat acctaactta taaattaatt aatcttaaaa aacggaggtt
     5581 ttatgaaaca gaagtggtct cagattgaga ataaacaacg ctttagtatc aagaagttaa
     5641 gtgtcggtgt ggcatcggta tcaataggat tttttatcac gggtgttccg atggttcaag
     5701 cagatactag tggagaagga ttggagtcta cagttgcggt cgcaacggat atggatagta
     5761 ggcaaaattc tgcggtagag aaaaaagaag atggaccatt atcagatgag ccagttaaaa
     5821 cggagcaggt ggatgaacca gttgctgaag agggagtggt cgaagaagtt gtagatacag
     5881 aggcgggtga agaatcaggt cttctcacag atcaagctgc gaccgagata aaaactacag
     5941 ctggtaagac aacagatgag tcaaaggaaa aagaagacat tagcggaaaa gaagctagtg
     6001 ctcctcaaac aatcccgcag gaatcacagc ttgagccaga agaggtgaca agagggcgct
     6061 atattttaca attttccgaa gagaaccgaa atcttgtatt ggataaatta aagaaaattg
     6121 atggcgttaa aattgttcat gagtataagg aggttttaac gggagcatca gtagaggtag
     6181 ggaaagaaag tttgtctgat gtgaaggcaa ttaccgaatt aacctcttta gaagagagtc
     6241 gccgtatccg accgactctt catactgcta aacagctggt tggtgcctta aaagcaagtt
     6301 ctaaatatca gacagatggt cgcggaatgg tgattgcagt cattgactcc ggtttggata
     6361 ttaagcacaa agacatgagg ttggatgatg gtgtcattcc taaaatcaag gacattactc
     6421 catctacgac aggaacatac acactgaaag ttccccatgg atataattat gtatctggta
     6481 acgataatct ctacgatgat acccacgaac cacatggtat gcacatagca ggaactctgg
     6541 ctggaaatgc aacagacgaa gaagttgcgt ctaaaaaggg agttgatggg attgctccca
     6601 acgcacaact gctagtctac aagatttttt caaatgaccc taaaaattat aaagctgaga
     6661 cggaggatgc tgcttatgct gctattgaag atgctatcaa acacggggca gatgtcatca
     6721 gcttgagtgt tggttattat gatagcgggt taccagggaa tgcttactac acgattgcta
     6781 agagggcagc agaaaaggga attatcatta cagcggctat tggtaatgct ggtgcctcct
     6841 cttcagacac ctcctttgac ctgcatacaa ataatgcctt aggagctgtg gatacggcaa
     6901 caacagttgg tgtggcagcg actcccgcag ttatcgcggt tggttcggcg agaaataccc
     6961 atcttgttca acgagaattt atgctgaatg gacagtcttt tggttactat cctattggct
     7021 atacaacgct tacagaggga aaatatgaat ttgtagatgc tggaaatggt cattgggaag
     7081 aagtgcaagg gcttgatttg gctggtaaag tagcggttat caaaaaagat aagtttgact
     7141 tgaaagatgc tgttcgtaat ttgaaattca aggatgttgc tggaattatt gtgataaata
     7201 ctgatcaggg atggaacaag gattattata ggacccatca gttgttggta gatgataaga
     7261 ctttgctttc ctactcctct atctggggaa ttagtcttag cggggaagat ggaaggcgat
     7321 tattagaagt tgccaaccaa tcgcaaggta acgctggttt ggttcttaaa cctacaattg
     7381 gaatgaagaa gttgattgaa gtgccgactg tatcaggctt ttctagttgg ggacctacgg
     7441 tcaacttaga attgaagcca gagattgtgg cgccgggaga ggatgtttat gcaaccttga
     7501 atgacaatcg ttatggctcc atgtcaggga cttcgatggc ttcgccaatt gtggcgggtg
     7561 ccagcgcact tttattgcca cggattcgcc aaatgacacc accagaaggc atgactagga
     7621 tggatttgct gagaatcatt ttgatgaata ctgctacccc tttggttgat gttctagatt
     7681 catctgggca tgctttggaa aattctccga gacaacaagg tgctggtctg ttgcagattg
     7741 atagagcctt tgaaacagat gtgattcttc accaccgtct aaaaggaggg gtggaattaa
     7801 aagaaatagg gcgtgagaca gaatttgagg taaccttgga aaatctggga aaccaacaaa
     7861 gaagctttgc tatttcagct gggaaagtgt tgactagtca agatgttcct gttgatagaa
     7921 taggacgttc tggaaaagta gttaaagaga ttcatgcgac agaaatcaag gggtcgagta
     7981 ttcatctttc tgagcaatcc attcaactag gtccaaaaga gaagagaacc attcgcctga
     8041 aattggatgc aggagaagcg aaagaccagt ttgcagaagg gtatatttac ttcaaatcat
     8101 tgacggatgg gcagtctgac atcagcatac cttattttgg ctttgttggt gactggtcaa
     8161 aagaaaggat tgttgatgca ccggcttggg aaaccagttc taaattgaaa ctgacctcag
     8221 ttttatctag ctataaacac aataagtctg ggcgctatat tgaacttggg cgtgaaaaga
     8281 ttcaagataa tcaatcgcct ctaaatccag acaatatcgc aattcaaaac cagcattcgg
     8341 atagtcagat tgggaatgcc tttgttcgat ttgcactatt gagggatatt accaactatg
     8401 atttggatat tgtaaaagaa gctacagaag acgctcctgt tttaaggcgg attgataccg
     8461 gaaccatgct gtctcgtgtt cgctatgtag attattttga aagtctatcg gagtatttca
     8521 agcttcgtac tccgatagaa ttgcaccgtt gggatgggaa agtgtacgat gcaagcaatg
     8581 atgaaaatat accagcaccg gaaggacaat atttctttag attgcgggta aaaaataaag
     8641 aaaatggggc ctatcagtat acctatctgc cagtcaaaat tgataatcaa aagccagaga
     8701 ttgtcgcgat tgataccaat cgtctatcca gccatagaga actggtcgtc acagccaagg
     8761 ataataataa agtttgggag gttcgagcta atctaaatgg agaagatctt cttgttgaaa
     8821 aggttgtaga tgatgcaggt caactacatt accatctcaa agaagtggaa ctgccactcg
     8881 atgctaaaaa tcatctccgt gttgaggtga tggatatagc gggtaatgtg gttgctgttg
     8941 aaaaagattt gatggcgcct gtaatccagt ttaaaaattt ggaagatttg atggcaattc
     9001 gcagtaagaa aactgtagaa attaaagcga acgtctcagc gcaagtttcc gatgtacagg
     9061 ctaacttgga tgctcaggct gtgaattact ctcttgagaa tggtcaacta tctctccaga
     9121 ttccagagca atcagatgga catcatagtt ttgaattaat cttgaaagat aagtatggca
     9181 accctattta cactaaaacc ttgaattatt tggtagataa tgaaaagccg acgattgatc
     9241 ttgatattga aaaagatgaa gaggatgaag aggttatcca gattggcaaa aacgggcgtt
     9301 ttacattgaa ggggaaagtg agtgataatg ttagtcttcc taagaacatc aaactttact
     9361 attccaatct agacattggt aagggagagc tgaaaatcat agatgtaaaa gaagacggca
     9421 gttttgagca agacttcttt aaatctgatt ttcctagagc catcatgtta actgcggtag
     9481 atgagaaggg caataaatta aaggaccttc gtatcaatac aagtccagag agtctggatg
     9541 aggaggagga aacagaagtt ccgattactg ttaataactg gttgattgac ccgattcgtt
     9601 tcaataaaga aagtcttggt cgtgagctag atagcgagtt ggtcgacttc aaaaagcaag
     9661 aagatgggac ttatctattt acatttgaaa tagaagcaga aacggatcaa gctcattctg
     9721 tgcgcatcaa tggtggcgaa aaacgctatt ttgaggatgg caagttgacc tatccagtta
     9781 ctctgattga agagggaaat gttgtggata taagtgtgta caatgaggag gatgagttga
     9841 cttacacgaa gaaatatcag atgttggttg atacagaaaa tcctgtttta cagctggaaa
     9901 atgaggtgct accattggaa agacaggtag tggatagtga agaagatgaa gacgaggaaa
     9961 atcagtatgc aggagttctc ctggcagatg ctgatgggca cttgacactt accggaagcg
    10021 ccaaggataa tggaatttat tggtccttga agatcaacga agattttgta gctcgaggag
    10081 gcttctggag gcagtatgga aataatgaaa aagcctttcg ctatgagcta catagtctga
    10141 aagacgggga tacagtcaaa cttgatttga gtgacagttt tggaaatgct cttgtgaaga
    10201 aatataaggt acggttaaat gacaaggaag tatctgagca agttcctgaa aaagaccttc
    10261 atgtggagca atcagataag gatcaagcct ctagcattcc tatttcgaaa tcggaagcgc
    10321 acgtaccaat gccaaaagaa gagaattcgc ttgcttcgca aacagaattc actgaaatcg
    10381 cgctgttaac tggcgataca atagaagatg gtgtggagca tttggtgaga cttacaaaac
    10441 atgaggaggc actaggaatt tctgacgaga gaatagaagt gtccgtacct cacagagaat
    10501 tatttgaaag aagcggaaga ggagagacaa gtgcattagc ggcggatact agtgggaaac
    10561 tgcctcaaac tggggatagc cttggaagtg tctttataag tgctttgtta ggtctatttg
    10621 gtggagctat ggccctcgga aatctgaagc gaaaagaata gtaaaaaacc taggaagatt
//
LOCUS       DASGBY010000065        10100 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.065, whole genome shotgun sequence.
ACCESSION   DASGBY010000065 DASGBY010000000
VERSION     DASGBY010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10100
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.065"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(28..1038)
                     /gene="gap"
                     /locus_tag="U1396_001258"
     CDS             complement(28..1038)
                     /gene="gap"
                     /locus_tag="U1396_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008090210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEM5342450.1"
                     /translation="MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPVMLAHL
                     LKYDTTQGRFDGTVEVKDGGFEVNGKFVKVSAEREPGNIDWATDGVDIVLEATGFFAS
                     KEKAEQHIHANGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPM
                     AKALHDAFGVQKGLMTTIHGYTGDQMVLDGPHRGGDLRRARAAAANIVPNSTGAAKAI
                     GLVIPELNGKLDGAAQRVPVPTGSVTELVATLDKKVTAEEVNAAMKAAATESFGYTED
                     QIVSSDIVGISFGSLFDATQTKVIEVDGEQLVKVVSWYDNEMSYTAQLVRTLEYFAKI
                     AK"
     gene            complement(1405..3396)
                     /locus_tag="U1396_001259"
     CDS             complement(1405..3396)
                     /locus_tag="U1396_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEM5342451.1"
                     /translation="MRKKLKFSLVAVACATFLTACGTSNSSAPKAGEATPQTDFHSYI
                     NAQWLKDTKLGAGESQIDNLSQLSEKTQEAIQEMIDQLDMDYSKLQAGSDEKKLIDFY
                     RLAADFDTRNKLGLEPIKPYLEEIKKASTMEELNKILVALYGKNIRNLLHINVTQDIK
                     DSNKNTIYVDPHKLSFPKENYDGTDEFSLKNQKAFKAYLQEVFSLAGESSKEASSKAD
                     LLFNLEKEMAAVQRPKEEANNFEAMYNEKTWDEVKALVPNLPIAELVSELGLQNAPTT
                     VVSEPDALKKLNELYQEKNLDALKALLQYRVIAHYNDYLSSNLIEAKAKYDGVATGAV
                     DTPSQEEVAQAAIDANFSDMIGKVYVKHHFSEESKANILSMVQEIKATYAERIKAVQW
                     MSEETKMRALKKLDTLVVKIGYPDQWKDYSQLAIQSKEEGGSLLSNFDMVKTLELREE
                     MGQFGKPFDKSQFGMPSHTVNAYYSPTNNEIVFPAGILQAPLYDPKASPEENLGGIGA
                     VIGHEISHAFDKAGSQFDEKGNLVNWWKPEDLEKFNKKVQQAADIYSKLEVAPGYYVN
                     GEISTGEIMADLGGLTVAIDIAQKKGYDTKKVFESYGKAWREVTTKEFAIANISDEHP
                     PAKYRVNNIVNQIDQFYTDFNVKEGDPMYVKPEDRLRVW"
     gene            complement(4378..6459)
                     /gene="fusA"
                     /locus_tag="U1396_001260"
     CDS             complement(4378..6459)
                     /gene="fusA"
                     /locus_tag="U1396_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEM5342452.1"
                     /translation="MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWNNHRVNIIDTPGHVDFTIEVQRSLRVLDGA
                     VTVLDSQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFLYSVSTLHERLQANAH
                     PIQLPIGSEDEFRGIIDLIKMKAEIYTNDLGTDILEEDIPAEYLEQAEEYREKLVEAV
                     AETDEELMMKYLEGEEITNEELKAAIRKATINVEFFPVLCGSAFKNKGVQLMLDAVID
                     YLPSPLDIPAIKGVNPDTDAEEERHASDEEPFAALAFKIMTDPFVGRLTFFRVYSGVL
                     NSGSYVLNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVGLKDTTTGDSLTDEK
                     AKIILESIHVPEPVIQLMVEPKSKADQDKMGIALSKLAEEDPTFRVETNVETGETVIS
                     GMGELHLDVLVDRMRREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGGKGQFGDV
                     WIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLVESMANGVLAGYPIVDVKAKLY
                     DGSYHDVDSSETAFKVAASLALKEAAKSAQPTILEPMMLVTITAPEDNLGDVMGHVTA
                     RRGRVDGMEARGNTQIVRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYEDVPKSVQ
                     DEIIKKNGGNA"
     gene            complement(6901..7371)
                     /gene="rpsG"
                     /locus_tag="U1396_001261"
     CDS             complement(6901..7371)
                     /gene="rpsG"
                     /locus_tag="U1396_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011285383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEM5342453.1"
                     /translation="MSRKNQAPKREVLPDPLYNSKLVTRLINRVMLDGKRGTAASIVY
                     GAFDQIKEATGNDALEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTTLGLR
                     WLVTIARNRGEHTMIDRLAKEIMDAANNTGAAVKKREDTHKMAEANRAFAHFRW"
     gene            complement(7388..7801)
                     /gene="rpsL"
                     /locus_tag="U1396_001262"
     CDS             complement(7388..7801)
                     /gene="rpsL"
                     /locus_tag="U1396_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEM5342454.1"
                     /translation="MPTINQLVRKPRKSKVEKSKSPALNVGYNSRKKVQTNVSSPQKR
                     GVATRVGTMTPKKPNSALRKFARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKD
                     LPGVRYHIVRGALDTAGVNDRKQGRSKYGTKRPKG"
     gene            complement(8033..9655)
                     /gene="groL"
                     /locus_tag="U1396_001263"
     CDS             complement(8033..9655)
                     /gene="groL"
                     /locus_tag="U1396_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940029.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEM5342455.1"
                     /translation="MAKEIKFAADARESMVRGVDILADTVKVTLGPKGRNVVLEKAYG
                     SPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREG
                     LKNVTAGANPIGIRRGIEAAVATAVESLKAQASPVSNKAEIAQVAAVSSRSEKVGEYI
                     SEAMERVGTDGVITIEESRGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELENPFI
                     LITDKKISHIQDILPLLESILQTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGTVITEDLGLDLKDATIEALGQAAKVVVDKDGTTIVEGV
                     GNAEAIANRVAVIKSQIEGTTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKL
                     RIEDALNATRAAVEEGIVAGGGTALVNVIDSVAKLELKGDDETGRNIVLRALEEPVRQ
                     IAYNAGYEGSVIIDKLKNSELGTGFNAATGEWVNMMDAGIIDPVKVTRSALQNAASVA
                     SLILTTEAVVANKPEPAAPAMPQGMDGMGMGY"
     gene            complement(9667..9948)
                     /gene="groES"
                     /locus_tag="U1396_001264"
     CDS             complement(9667..9948)
                     /gene="groES"
                     /locus_tag="U1396_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEM5342456.1"
                     /translation="MLKPLGDRIVVKIEEKEQTVGGFVLAGASQEKTKEASVLAIGQG
                     IRTLNGDLVAPAVAVGDTVLIDAHAGLEVKDGEQTVHIIREADILAIVE"
BASE COUNT         2730 a         2273 c         1968 g         3129 t
ORIGIN      
        1 cgaagcctct tcgattttca ctaaggatta tttagcgatt tttgcgaagt actcaagagt
       61 acgaacaagt tgtgcagtgt aagacatttc gttgtcgtac catgaaacaa ctttaaccaa
      121 ttgctcgcca tcaacttcga taactttagt ttgagttgca tcaaacaatg aaccgaatga
      181 gatacctacg atatctgaag atacgatttg gtcttcagtg taaccaaatg attcagtagc
      241 agcagctttc atagcagcat ttacttcttc agcagttact ttcttgtcaa gagttgcaac
      301 caattcagtt acagaacctg ttggaactgg aacacgttgt gcagcaccgt caagtttacc
      361 gttcaattct gggattacca agccgatagc tttagcagca ccagttgagt taggaacgat
      421 gtttgcagca gcagcacgtg cacgacgaag gtcacctcca cggtgtggtc cgtcaagaac
      481 catttggtca ccagtgtaac cgtggattgt agtcatcaaa cctttttgaa cgccaaatgc
      541 atcgtgaaga gctttagcca ttggtgccaa acagtttgta gtacatgaag cacctgagat
      601 aactgtttca gtaccatcaa ggatgtcgtg gttagtgttg aaaacaacag tcttaacatc
      661 gttaccacca ggagcagtga taacaacttt tttagcaccg ttagcgtgga tgtgttgctc
      721 agctttttct ttagaagcaa agaaacctgt agcttccaaa acgatatcta cgccatcagt
      781 agcccagtcg atgtttcctg gctcacgctc agcagaaact ttaacgaatt taccgttaac
      841 ttcgaaacca ccgtctttaa cttcaacagt accgtcgaaa cgaccttgag ttgtatcata
      901 tttcaacaag tgtgcaagca ttactggatc tgtaaggtcg ttgatacgag taacttcaac
      961 accttctacg ttttggatac gacggaaagc aagacgaccg atacgtccga aaccgttaat
     1021 accaacttta actaccatga atgatttcct ccttatgaaa atcgagttct ttattttaaa
     1081 aggcaagcct tttaatcctt ttgtgaaaat attaacttgt aagcctacaa gcatcttttc
     1141 aacgttttta ttatataact atttaccgaa aattgcaact gcttaccggt tcatcttatg
     1201 taaaaaatag aaggccaaaa aataaaagtt aaaaatcata gccatgcgtt ttctcgggtg
     1261 gttatgactg gttaaatact taacttaata gcattgccat acctcgacac attttttacc
     1321 gattcttggt ttaccgctac ttctattttt tacctaaaaa ggtgtctacc gcccattttg
     1381 gaccgcagac acctctataa tcttttacca cactcgtagg cggtcttctg gtttcacata
     1441 cattggatcc ccttctttga cattgaagtc tgtatagaat tgatcaattt ggttgacaat
     1501 gttgttaacc cgatatttag ctggtggatg ttcgtcgctg atgttggcaa tagcaaattc
     1561 tttggtggtg acttcacgcc atgctttacc ataagactcg aagactttct tcgtatcgta
     1621 gccttttttc tgagcaatat caatggcaac cgttaaacca ccgagatccg ccatgatttc
     1681 accggttgaa atttcgccat tgacatagta gcccggagcc acttccaatt tagaatagat
     1741 atctgctgcc tgttgaacct ttttattaaa tttttcaagg tcttctggtt tccaccagtt
     1801 gacaaggttc cccttttcat caaattgaga accagcctta tcaaaggcat gggaaatttc
     1861 atgaccgata acagccccga ttccacctag attttcttcg ggactagctt ttggatcgta
     1921 gagaggagcc tgtaaaatcc ccgctggaaa gacaatttcg ttgttagttg ggctgtaata
     1981 ggcattcacc gtgtgagaag gcatgccgaa ctgcgactta tcaaaaggct tgccaaattg
     2041 ccccatctct tcacgcaatt caagtgtttt taccatatcg aagttagaaa gaagacttcc
     2101 cccttcttcc ttggattgga tagcaagttg tgagtaatcc ttccactggt ctggatagcc
     2161 gattttaaca accaatgtat ctagtttttt caaggcccgc atcttggttt cttcagacat
     2221 ccactgcact gctttgattc gctctgcata agtcgcttta atctcttgaa ccatagatag
     2281 gatattagcc ttggattctt ctgaaaaatg gtgtttaacg taaactttgc caatcatatc
     2341 ggagaaattt gcatcaatgg ccgcttgagc aacttcttcc tgactcggag tatctaccgc
     2401 accagttgct acgccgtcgt atttcgcttt tgcctcgatt aaattgcttg acagataatc
     2461 attgtaatgg gcaatcacac gatattggag cagggcttta agagcgtcta aattcttttc
     2521 ttgatagagt tcatttaatt tttttagagc atctggttct gatacgactg tcgttggagc
     2581 attctgaagt cctaactcag aaaccaactc agcaatcggt aggttgggaa ccagtgcttt
     2641 gacctcatcc caagtcttct cgttatacat ggcttcaaag ttattggctt cttcttttgg
     2701 ccgttgcact gcagccatct ctttttccaa attaaagagg aggtctgcct tagaagaggc
     2761 ttcttttgag gattctcctg ccaagctaaa cacttcctgc agataggctt taaaggcttt
     2821 ttggtttttc agtgaaaatt catctgtgcc atcataattt tcttttggaa aacttaactt
     2881 gtgagggtca acgtagatgg tgtttttgtt actgtctttt atatcttgag taacgtttat
     2941 atgaagcaaa ttgcggatgt ttttgccgta tagggctacc agaatcttgt tgagttcttc
     3001 catggtagag gcttttttaa tctcctctaa ataaggcttg ataggctcta accccaattt
     3061 gttgcgagta tcaaaatcgg ctgccaatcg gtaaaaatca ataagttttt tctcatcact
     3121 accagcttgc agcttggaat agtccatatc cagctggtca atcatctcct ggattgcttc
     3181 ttgcgttttc tcagagagtt gactcagatt atctatttgc gattcaccgg cacctaattt
     3241 tgtatctttc aaccattgcg cattgatata agaatgaaaa tccgtctgtg gtgttgcttc
     3301 acctgctttg ggagccgagg aattacttgt accacaggct gtcaaaaatg tcgcacaggc
     3361 gactgctact aatgaaaatt ttaatttttt tctcatgatt tctgtccttt ctttttattg
     3421 ttaatgtgct tagtaccact atttcatcac catacaagca tcctccttta gtaattagcg
     3481 gtcctaaact actctttcat cgatctacct tataaggatt ctaacattta tatctgcttt
     3541 tcttctgtag cctatctatt aattctctta ttttttgtaa ccattcccaa acaaagtaat
     3601 tctaaatgat ttaaaacatt tattttagca aattgagtga gagtaggcaa gaactcgaac
     3661 ggtcaaaaga gttcagcaac aattcctaat ttcaagttat taagctaaaa caatctattc
     3721 acagaccgtt ttaatccgtt tatttcacag tagccagacc tagaagtcac tgttgagttc
     3781 atcggcaaca ggaatcttat acccaatgaa atcccaaaat agcaaaccct gatcttttgt
     3841 tagccatcca cacctaaatt agggtatttt tttataaatt gtagctttct cattgtatat
     3901 ttccaaaaag gatctgacgg atacctattt tttagtcgtt tagtttgttt ttagcactca
     3961 cttcaaaggt tcagggaacc tttgaaggct agagataggg cgaagcaagt tcgcctcaat
     4021 agctgcaggt tgctagaaca gcctttaggc tgttctaagt tagaaataag acttgcctcg
     4081 cgaatcacct ctgtaaagta cggcaaagcg agttcaaata ctccagtgaa gtgttcgaag
     4141 ttgaaaatag ggaaacgaag tttcatcgct cgtcgaagta atcaaagata aactactgat
     4201 actcaataaa aatcaaaagt agcctaggaa acgaagccga agatagaact ggagttcatc
     4261 aaggcaagtt gacaacggat aattttgatt tccgaagagt atgagtatca cgctcagatg
     4321 tgtgacatat ccgtcgtacc aaaaaacacc tacccgaagg taggtgtaga taggcaatta
     4381 tgcattgcca ccgtttttct taatgatttc atcttgtaca gattttggta catcttcgta
     4441 gtggtcaaat accatcatga aggtaccgcg accttgagtt gctgaacgaa gaacagttgc
     4501 gtaaccgaac atttcagcaa gtggcacata agcacgaacg atttgtgtgt taccacgagc
     4561 ttccataccg tcaacgcgac cacgacgtgc agtaacgtga cccataacgt cacctaggtt
     4621 atcttctggt gcagtgatgg ttacaagcat cattggctca aggatagttg gttgagctga
     4681 tttagcagct tctttaaggg caagagatgc tgccactttg aaggctgttt cagatgagtc
     4741 gacatcgtgg tatgaaccat cgtaaagctt cgctttaacg tcaacgattg ggtaaccagc
     4801 aagaacaccg ttcgccatag attctacgag acctttttca accgctggga tgaattcacg
     4861 tggaaccaca ccaccgacga tagcgttctc gaactcgaaa cctttacctt cttcgtttgg
     4921 tgtgaattcg atccaaacgt caccgaattg acctttacca ccagactggc gtttgaagaa
     4981 accacgagct tgtgtagaag cacggaatgt ttcacggtat gatacttgag gagcacctac
     5041 gtttgcttca accttgaatt cacgacgcat acggtcaaca aggacatcca agtgcaactc
     5101 acccatacca gagataactg tttcaccagt ttcaacgttt gtttcaacgc ggaatgttgg
     5161 atcttcttca gccaatttag aaagggcaat acccatcttg tcttggtcag ctttagactt
     5221 aggctcaacc atcaattgga taactggttc tggaacgtgg attgactcaa ggatgatttt
     5281 tgctttttca tctgtcaatg agtcaccagt tgtagtatct ttcaaaccaa ccgcagcggc
     5341 gatgtcacca gcgtaaacag tttcaatttc ttggcggctg tttgcgtgca tttgaaggat
     5401 acgtccgata cgctcacgtt tacctttaga agtgttcaat acgtatgaac cgctgttaag
     5461 gacacctgag taaacacgga agaatgtcaa acgacctacg aatgggtcag tcataatctt
     5521 gaaggcaaga gctgcaaatg gctcttcatc tgatgcatga cgctcttctt cagcatctgt
     5581 atctgggtta acacctttaa tagcagggat gtcaagtggg cttggaaggt agtcgataac
     5641 cgcatcaagc atcaactgaa cacctttgtt tttgaaggct gaaccacaca atactgggaa
     5701 gaattcaacg ttgatagttg ctttacggat agcagctttc aattcttcgt ttgtgatttc
     5761 ttcaccttca aggtatttca tcatcaattc ttcatcagtt tcagcaactg cttcaaccaa
     5821 tttttcacgg tattcttcag cttgttcaag gtattcagct ggaatatctt cttcaagaat
     5881 atctgtacca aggtcgttag tatagatttc agctttcatc ttgatcaagt cgatgatacc
     5941 acggaactca tcttctgagc cgattggcaa ttggattgga tgagcatttg cttgaagacg
     6001 ctcatgaagt gtgcttactg aataaaggaa gtcagcaccg attttatcca ttttgttagc
     6061 gaatacgata cgtggaacac cgtattcagt tgcttgacgc catactgttt cagtttgtgg
     6121 ctcaacacct gattgtgagt caagaacggt taccgcacca tcaagaacgc gaagtgaacg
     6181 ttgtacttcg attgtaaagt ccacgtgtcc tggtgtgtcg atgatgttta cacggtggtt
     6241 gttccattga gctgttgtcg cagcagatgt gatagtgata ccacgctctt gctcttgctc
     6301 catccagtcc atttgcgatg caccttcgtg agtttcaccg attttgtgga ttttaccagt
     6361 gtagtaaaga atacgctcag ttgtcgttgt tttacccgcg tcaacgtgcg ccatgatacc
     6421 gatattacga gttttttcta atgaaaattc gcgtgccatg aggtttgttc tcctatattt
     6481 ttagatttct attctgatta taccatattt taagaaaagc gagtgggcaa atcccacccg
     6541 cttaagttct tactaatggt gtgaagtgga cgaggcaagc ctcaatccga tttgtgatgg
     6601 ttgaacgata aattgctacc ataatctcaa ttgatttatg tagaactgac ttaacgtcct
     6661 cacatcctaa ttgaactcgg gctacaactc actgacaaaa agatgaacct catcgattgc
     6721 acagcaatct gcttcgcttc cctattttgt ctaggagttg cttgacgccc tcgtatctta
     6781 atcttagttg aattttagct acaaatgtct gccaaaaaga taaaatctcc tagaaactga
     6841 agtttctgcg tcaattttcc tattttggct agcatttgtt taacgctaaa atatcctatc
     6901 ttaccagcgg aagtgtgcga atgcgcggtt tgcttctgcc attttgtgag tatcttcacg
     6961 tttcttaaca gctgcacctg tgttgtttgc tgcatccatg atttctttcg caaggcgatc
     7021 gatcatagtg tgctcaccac ggttacgagc gattgttacc aaccaacgaa gaccaagtgt
     7081 tgtacgacgc tctggacgaa cttcaactgg aacttggtag ttagaaccac cgacacgacg
     7141 tgcacgtact tcaagtacag gcatgatgtt ttccattgct gtttcaaata cttcaagtgc
     7201 atcgttacca gttgcttctt tgatttgatc aaaggcaccg taaacgattg atgcagcagt
     7261 accacgttta ccgtccaaca taacacggtt aatcaaacga gttaccaatt ttgagttata
     7321 caatggatct ggcaatactt cgcgcttagg cgcttgattt ttacgactca tttatatttc
     7381 ccctttctta gccttttgga cgtttagtac cgtatttaga acggccttgc ttacgatcgt
     7441 taacacctgc tgtatcaagt gcaccacgaa cgatatggta acgtacccct ggaaggtctt
     7501 ttacacgtcc accacgaaga agaacaacac tgtgctcttg caagttgtga ccgatacctg
     7561 ggatgtaagc agtaacctcg ataaggttgc tcaaacgtac acgagcaaat ttacgaaggg
     7621 ctgagttagg ttttttaggt gtcatagttc cgacacgagt tgcaacaccg cgtttttgtg
     7681 gtgatgaaac gtttgtttga acttttttac ggctgttgta accaacgttc aaagctggtg
     7741 atttagattt ttctacttta gacttacgtg gtttacgtac caactggtta attgtaggca
     7801 tctacattct cctgtatata ttttttattt ttggtgatag ggcattggtg acaaccccta
     7861 tctgtgtgta cttttgcaac atttgtcagc acgtccctgt acactcttga gagaccaaaa
     7921 gtaaaaagta ccgtctaata tagtaccaca ttccaaagcc attgtcaaat agatatgttt
     7981 gaaattttca agaaaaaaac acagccaatc agctgtgtca ttttgctatt ccttagtaac
     8041 ccatacccat tccgtccata ccttgtggca tagctggagc ggctggttct ggcttgttgg
     8101 caacgactgc ttctgtcgtc aaaatcaagc tggctacaga agctgcgttt tgaagggccg
     8161 aacgagtcac cttaacaggg tcaataatac ctgcatccat catattcacc cattcacctg
     8221 tcgcagcatt aaagcctgtt ccaagctcag aattcttcaa tttatcaatg ataactgatc
     8281 cctcataacc ggcgttatag gcaatctgac gtactggttc ttccaaggca cgaaggacaa
     8341 tattgcgtcc tgtttcatcg tcgcctttca actccaattt cgctacgcta tcgataacat
     8401 tgacaagggc tgtaccacca ccggcaacga tgccttcttc aactgcggca cgtgttgcgt
     8461 tgagggcatc ttcgatacgg agtttcattt ctttcaactc agtctcagta gcggcaccga
     8521 ctttgataac agcaacaccg ccagacaatt tagccaaacg ctcttgtaat ttttcacggt
     8581 caaattctga agttgttccc tcaatttgtg acttgataac agccacacgg ttggcaatgg
     8641 cttcagcatt gccaacacct tcaacaatag ttgtaccatc cttgtcaacc acaaccttgg
     8701 cagcttgacc aagtgcttca atagtcgcat ctttcaagtc caaaccaaga tcttctgtaa
     8761 tcactgtccc acctgtcaag atcgcgatgt cttccaacat agctttacga cggtcgccaa
     8821 agcctggcgc cttaacagca acaacgttga acgtaccacg aatcttattg agaacaaggg
     8881 taggaagtgc ttcaccatcc acatcgtcag caataatcaa aagcggacga ctagtctgaa
     8941 ggatgctttc caaaagtggc aaaatatctt ggatgtgaga aattttctta tcagtaatca
     9001 agataaatgg attttcaagc tccgcaacca tcttctcatt atctgttacc atgtattgtg
     9061 acagataacc acggtcgaat tgcatgcctt ctaccacatc caactcagtt tccataccgc
     9121 gagattcttc gatagtgatt acgccgtctg ttcccacgcg ctccatagct tctgaaatgt
     9181 actcaccaac tttttcagaa cgtgaagata ccgctgcaac ttgagcaatt tcagctttat
     9241 tggatacagg acttgcttgt gctttcaagg attcaaccgc agtcgcaact gctgcttcaa
     9301 tcccgcgacg gataccaatt gggttggcac ctgcagttac gtttttcaat ccttcacgaa
     9361 caatagcctg agtcaacaca gtggccgttg ttgtaccgtc accagcgatg tcattggttt
     9421 ttgatgccac ttcagatacc aacttggcac ccatattttc aaagtggtct tccaattcga
     9481 tttctttggc aatggttaca ccatcatttg taatgagtgg tgagccataa gctttttcca
     9541 agacaacatt gcgacctttt ggacccaagg ttactttgac tgtatcagcc aaaatatcaa
     9601 caccacggac catgctttca cgtgcatctg ctgcaaattt gatttctttt gccattttcc
     9661 tacctcttat tctacaattg ccaaaatgtc tgcttcacgg atgatgtgaa cggtctgttc
     9721 tccgtctttg acttccaatc ctgcgtgagc atcaatcaaa acagtatctc caactgctac
     9781 cgctggggca accaagtcac cattcaaggt acgaatccct tgaccgatcg ctaggacact
     9841 tgcttctttt gtcttttctt gacttgcacc tgcaaggaca aagccaccaa ctgtttgttc
     9901 tttttcttca atttttacga cgatacgatc gcccaatggt ttcaacatct tattacctcc
     9961 tggtcttttt agcactctac actcgcgagt gctaactcac atttcctatt gtatcacttg
    10021 gtcaaaaata gtcaagaaaa ttctttttta atttacctaa aatccgtcta gggactgagg
    10081 aaacgcaacc tgttaattat
//
LOCUS       DASGBY010000066        10019 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.066, whole genome shotgun sequence.
ACCESSION   DASGBY010000066 DASGBY010000000
VERSION     DASGBY010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10019
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.066"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(19..1353)
                     /locus_tag="U1396_001265"
     CDS             complement(19..1353)
                     /locus_tag="U1396_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEM5342457.1"
                     /translation="MLELFKAINNLVWGPPLLLLLVGTGVYFTLRLGIFQISKLPTAF
                     RLIFSSDQSGQGDVSSFAALCTALAATVGTGNIVGVATAITTGGPGALFWMWVAAFFG
                     MATKYAEGFLAIKYRTKDANGQAAGGPMHYITLGMGQKWKPLAVFFAISGVLVALLGI
                     GTFSQVNSITASLETSFGLEPPLVSVITAISIVFVVFGGIEKISDVSTKIVPFMAILY
                     ILASITVLAVHWDQLLPTLALVFKSAFTPAAAVGGFAGATVQQAIQRGIARGVFSNES
                     GLGSAPIAAAAAKSDNPVEQGLISMTGTFIDTLIICTLTGFTILVTDQWSVEGLAGAP
                     LTQAAFSTVFGQPGVLALTISLVLFAYTTILGWSYYGERCIEFLFGTKAILPYRLVFV
                     AMVALGGFLKLDLIWTIADIVNGLMALPNLIALLALSPVIIKETRQYFAKKK"
     regulatory      complement(1460..1564)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(1827..2459)
                     /locus_tag="U1396_001266"
     CDS             complement(1827..2459)
                     /locus_tag="U1396_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342458.1"
                     /translation="MFSIQSIQKKFGKRSLFSDVTLDLQAGKVYALIGASGSGKTTLL
                     NILAKLESYDAGDILYKGKDLKKLKPHLFFREELGYLFQNFGLLESQTIRENLDLGLI
                     GQKLSKDERKLRQEAALDAVGLSYLDLSQPIYELSGGEAQRVALAKVILKNPPLILAD
                     EPTAALDPKSSQEIMDILLSLKSPDRLIVIATHNPLIWERADLIIKMEDL"
     gene            complement(2461..4443)
                     /locus_tag="U1396_001267"
     CDS             complement(2461..4443)
                     /locus_tag="U1396_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM5342459.1"
                     /translation="MKGKFVLVSTIILAVFMIWLGVSQKETMLVHYYPSVTSLSVSED
                     VTYSDVRQRLEEYSQQTDSVIARRVIEPSTSGGRTFSYDNFSQSSLPRGLEEFQASEK
                     VESALLTKYFIFQGKATVEELRSLLVSLGFDEVQIRKPSTIATLLAFLTQGGQFLAVL
                     VFLITYMALVVVANVRQLRTAGIRLIAGDSRWHLFLLSLQENAKEIALTIPFAVLPAV
                     GLAYLIGLDGYSVYYLVAALVGYHFLLGLIALFFAATFTLAIRIYHFLPLLKGKMPLQ
                     GILTIMVMGQMLALLVVSLGMAQTVYYSGIWQEYQAGARQWEKEEDYYSLAWNIAADG
                     HSGLNSPENWYPLLKQALEKDGALFVKSNLNAYLMGSQLEDGTSLDSYHPAGNTLYVS
                     PNYLQIQDVDLSDEALPSLQEGEFQLLLPEKLRPESDIYLHLYQDYINRMVRPANQAS
                     SATIKGKLAYLKDGQKQFIYNHRSSQHVQYLTDPILVVLAPSSLGKESADFWLNEVDS
                     SILFKNRDKLLRELKARNLFQFVNEVRSSSSLFTELLDRIRIETISTSMGAILGIVTS
                     IILFNTMNLLYFEEFKRDIFIKEIAGMDFLGIHKKYLTFQLLSLLLALGASMVVTGHM
                     FISSISFALFMVNALCLLRWQARKDGTWNIRILKGA"
     gene            complement(4463..5948)
                     /locus_tag="U1396_001268"
                     /pseudo
     CDS             complement(4463..5948)
                     /locus_tag="U1396_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774933.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
     gene            complement(6323..6616)
                     /locus_tag="U1396_001269"
     CDS             complement(6323..6616)
                     /locus_tag="U1396_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342460.1"
                     /translation="MDLNDYYTDIDPDFSFRELRRKIERYRIVMQARVLLDKRDTIKR
                     TGKTDIQKIASETKQTIQTMRGRLETSIKGSVRTGIEEAVDKHSSLYDTITQS"
     gene            complement(6603..6992)
                     /locus_tag="U1396_001270"
     CDS             complement(6603..6992)
                     /locus_tag="U1396_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342461.1"
                     /translation="MESDVIWERIRKREQELFDLEDDYNQEKNKIEARQEDLEQRQNA
                     LKLLIEREQEEMRCFLSRHSLDYDAALSFFQELDQLQEESFYQYRQEMDQLFQQEERL
                     SQQYRTDLYRLEDTISQLRRDYSNGLE"
     gene            complement(6977..8191)
                     /locus_tag="U1396_001271"
     CDS             complement(6977..8191)
                     /locus_tag="U1396_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEM5342462.1"
                     /translation="MISDKDYRDISKVVYDVDLLKAPKTPLIQDTPVVNGSFIIIEPP
                     VDAGNGMQAMAVAPIKGYDTDNKPIPDTSQVVIAYAGTNDGDIKDWATDISMIGGGNT
                     ATFTVPGQNVPYISQSITAVAFADQIVQRYPDATITITGHSLGGSLAMYVALKKDLPA
                     ITFNGPDIHNMISEDEIEYMQQHRAQFRNYRNKYDFLGDITGNKTKSAIYPAVKNIPG
                     DAIADHMLNAWKFNKYGQLIDANGQVVSTFTGAPLEDTRLAMKRWKKQKTALSKGGLS
                     RSEEIFLDSEQARTISAGIASVADAGQMSIFAHCDDYVHQAEELWNSIDFHSYSALSY
                     WEVCALFSEYGVSQETIVREIEETMDIYRQRAEIATEKFTILDTQIIQAINTMLETDK
                     RLAGDFEKWNQM"
     gene            complement(8188..8589)
                     /locus_tag="U1396_001272"
     CDS             complement(8188..8589)
                     /locus_tag="U1396_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342463.1"
                     /translation="MSKKCPRLILVMSAICIAIGGMIMFSFHRMSEEEKLQAQIRKEQ
                     ERMVLYAVNHYEGIEKIEFVNFEKDNKTGTWDSDAIINDKFHVTFVSWGEDDITINGG
                     KSQTGDYLVPKVATTVTEISNIQVKYYKELP"
     gene            complement(8615..8890)
                     /locus_tag="U1396_001273"
     CDS             complement(8615..8890)
                     /locus_tag="U1396_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342464.1"
                     /translation="MITDQDYRWIADDVYKVDPLKTDDTLKQGGRAGQGQYVIIEPPV
                     DAGNGMQAMAVAPIKGYDSDNKPIPDTSQVVIASFPYPDSSVNTEYL"
     gene            complement(8890..9300)
                     /locus_tag="U1396_001274"
     CDS             complement(8890..9300)
                     /locus_tag="U1396_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342465.1"
                     /translation="MSPKRTRLILVMSAICIAIGGMIMFSFHRMSEEEKLQAQIRKEQ
                     ERMVLYAVNHYEGIEKIEFTSFRENRMTGAWYAGAILNDDYKVTITAMGFDGDLSMND
                     GPSDKTGLYLRIKDKPTTISNPNHIEVIYFKGDN"
     gene            complement(9378..9611)
                     /locus_tag="U1396_001275"
     CDS             complement(9378..9611)
                     /locus_tag="U1396_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342466.1"
                     /translation="MITVQDYRWIAEDVYKVDPLKTDDTFKDGDRVAQDKFVILSQPQ
                     DMINGMQAMAVAPIKGYDAENKPIPDTSQVVIA"
     gene            complement(9608..9982)
                     /locus_tag="U1396_001276"
     CDS             complement(9608..9982)
                     /locus_tag="U1396_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342467.1"
                     /translation="MLFLSIGGMMMFNFHRMSEEEKLQAQIRKEQERMVLYAVNHYEG
                     IEKIEFTSFEENKMTGSWSAGAILNDDYKVTITAMGFDGDLSMTNGPSDKTGLYLRIK
                     DKPTTISIPNQIEVIYFEGDNQ"
BASE COUNT         2949 a         2325 c         1798 g         2947 t
ORIGIN      
        1 aagtggctga cttttatctt atttcttctt tgcaaaatac tggcgtgtct ccttgatgat
       61 aacaggagag agagctagta aggcgatcaa gtttggtagg gccatgagac catttacaat
      121 atcggcaatg gtccaaatca agtctagttt gaggaaacca cccaaggcaa ccatagctac
      181 aaagaccaga cggtaaggta agatggcttt ggttccaaat agaaactcaa tacagcgttc
      241 accataataa gaccaaccca gaatagttgt ataggcaaaa agaactagac tgatggttag
      301 ggccaagaca cctggctgtc caaatactgt cgaaaaggct gcctgagtaa gaggagcacc
      361 tgccaagccc tctaccgacc actggtcagt tactagaatc gtaaaacccg ttaaggtaca
      421 gatgataagt gtatcaataa aggtacccgt catagaaatc aagccctgtt caactggatt
      481 atcagacttg gcagccgcag cagcaatagg cgccgaaccc aaaccagatt catttgagaa
      541 aaccccacgc gcaatcccac gctgaattgc ttgttgcaca gtcgcacctg caaaaccgcc
      601 cacagccgct gctggagtaa aggcagattt gaaaactaag gccagggttg gcaagagttg
      661 atcccaatgc acggccaaga cagtaatact tgctaagata tacaaaatcg ccatgaaagg
      721 aacgattttg gttgaaacat ccgagatttt ttcaatccca ccaaaaacaa cgaagacaat
      781 tgaaatagcc gttattacac tgacaagtgg cggttccaat ccaaaactcg tttccaaaga
      841 agcagtgatg gaattaactt gcgaaaaagt tccaatcccc aagagagcta ctaatacacc
      901 tgaaatagca aagaaaactg ccaagggctt ccacttctgt cccatcccca aggtgatata
      961 gtgcataggt ccaccagctg cttgaccgtt tgcatccttg gtacggtatt taatggctaa
     1021 aaatccttcc gcatacttgg ttgccattcc gaaaaaggcc gcaacccaca tccagaaaag
     1081 agccccagga ccacctgtag taatagctgt cgcaactccg acaatatttc ctgtaccaac
     1141 tgtcgctgcc aaagctgtac aaagggccgc aaagctggac acatctccct gaccagactg
     1201 gtcactggag aaaatcagac gaaaagccgt cggcaattta ctgatttgaa agattcccaa
     1261 ccgtagggta aaatagacac ccgttccgac caatagtaac aagaggggcg gtccccaaac
     1321 aagattgttg atagccttaa atagttctaa catagttcct cctaagcgtt tctaacccga
     1381 taaagctgcc ggaaaaacaa aaagaggctt aacacttcaa cctctagaat caacgtgaaa
     1441 aatacagaaa aagcctattt ttcaacgctc tgtcctttta cctgagagtt tcagtagctc
     1501 tacttttcca agcaggacta ccttgcccct tcggtgccaa aatggtctct ccagagttcc
     1561 gtccattgaa cagtcagttt cccttctacc caatatcaac cggttattca gttttatcta
     1621 gttttatttt aatctaattt cacgaaaaaa tcaagaatat tttctgatac tcaatgaaaa
     1681 tcaaaagtag cctaggaaac gaagccgaag atagaactct gttactgtct tgtttcaagg
     1741 taacaggctg aaaaggtcca ccggagcttt tcactcatca aggctcttga caacggataa
     1801 ttttgatttt caaagagtat gaatttttac aagtcttcca tttttatgat aaggtctgct
     1861 cgctcccaaa tcaaaggatt atgggtcgca atcacaatta gccgatctgg gctcttcaag
     1921 gataacaaaa tatccataat ttcttgggag ctcttaggat ctaaggcagc cgtcggctca
     1981 tctgctaaaa tcaatggagg atttttcagg atgactttag caagtgctac ccgctgagct
     2041 tcccctcctg agagttcata gataggctga gacaggtcca gataagacag accaactgca
     2101 tcaagtgccg cttcctgcct caatttcctt tcgtctttgg acaatttctg accaatcagt
     2161 cccaaatcca gattttctct gattgtctga ctttctaaaa gaccaaaatt ctgaaagaga
     2221 tagcctaatt cctccctaaa aaagagatgg ggcttcaact ttttcaaatc cttccccttg
     2281 tagagaatgt cacctgcatc ataggactcc aacttggcta aaatattcag caaggtcgtt
     2341 tttccgctac cactggcacc tatcaaggca tagacctttc cagcctgcaa gtctagcgtt
     2401 acatcagaaa acaaactgcg tttcccaaat ttcttttgaa ttgattgaat agaaaacata
     2461 ctaggctcct ttcaaaatac ggatattcca agttccgtct ttcctcgcct gccacctcaa
     2521 taaacagagg gcattgacca taaacaaggc aaaactgata ctacttatga acatgtgacc
     2581 tgtcactacc atgcttgctc caagagccaa caagagggaa agcagttgga acgttaggta
     2641 tttcttatgg attcccaaga aatccatccc tgcaatttct ttgataaaaa tatcacgttt
     2701 aaactcttcg aagtataata gattcatggt attaaacagg ataattgatg tcacaatccc
     2761 taaaatagca cccatagatg ttgaaatggt ctctatccga atacggtcta aaagttctgt
     2821 aaagagggag gaactacttc tcacttcatt gacaaactga aacagatttc ttgccttcaa
     2881 ttcgcgcaaa agtttatccc tgtttttaaa taaaatactg ctatctactt cattcagcca
     2941 aaagtcagca gattcttttc ccagacttga cggtgccagc acaactaaaa tagggtctgt
     3001 caggtattgc acatgttgac tagaacgatg attgtagata aattgcttct gcccatcttt
     3061 taaataggca agttttccct tgatggtagc tgagcttgct tgattggcag gtctaaccat
     3121 acgattgata tagtcttggt aaagatggag ataaatatcg ctttcagggc gcaatttttc
     3181 aggtaagaga agttgaaatt ctccttcttg tagagaaggt aatgcttcgt ccgacaagtc
     3241 tacatcctgt atctgcaaat aatttggact aacgtagagg gtgttgcctg ctggatggta
     3301 gctatcaagg cttgtcccat cttccagttg ggagcccatt aaataggcat tcaaattact
     3361 tttgacaaag agcgcgccgt ctttctccaa agcttgcttt agtaaagggt accaattttc
     3421 aggcgaattt agtcctgagt gaccatccgc agcaatgttc caagccaaac tatagtagtc
     3481 ctcttctttc tcccactgcc gggcacccgc ttggtattct tgccaaatcc ctgaataata
     3541 gacggtttga gccatgccca atgacaccac cagtagagcc agcatttgcc ccataaccat
     3601 aatggtcagg attccttgca ggggcatttt cccttttaac aagggtaaaa agtgatagat
     3661 tcgaatggcc aaggtaaatg tagcagcgaa aaaaagggca atcaaaccaa gcaagaaatg
     3721 atagcctact agagctgcga ccagatagta gacagaatag ccatctaatc caatgaggta
     3781 ggccagtcca actgctggaa gaaccgcaaa tgggatagtt agagctatct ctttcgcatt
     3841 ttcctgtaga gatagtagaa ataaatgcca acgtgaatct cctgcgatca aacggatacc
     3901 tgctgtgcgc aattgcctta cattggcaac cactaccaaa gccatatagg taataagaaa
     3961 gaccagtacg gctaagaatt gaccaccttg tgtcagaaat gcgagtaaag tagcaatagt
     4021 cgaaggcttc cgaatctgaa cctcgtcaaa tccaagcgaa acaagaagag accgaagctc
     4081 ctctactgtc gctttccctt ggaaaataaa atatttggtt aaaagcgcag actccacctt
     4141 ttctgatgcc tgaaattcct ccagtcctct tggtaaggaa gactgactaa aattatcata
     4201 agaaaaggta cgtccacctg atgtacttgg ctcaatcacc cgcctggcaa tcacactatc
     4261 cgtctgttga gaatattcct ctaatcgttg tcttacatct gagtaagtca cgtcctcaga
     4321 taccgacaag ctggtcacag aaggataata atgaactagc atagtctcct tttggctgac
     4381 gcccaaccaa atcataaaga cggctagaat gatcgtcgat acaagtacaa attttccttt
     4441 cattctaact tcacctcatt aactatctgc catttaatac actcaactgg attttttctg
     4501 cctttttcgc ttgtttgttc agtaacatcc aactatttat caacagagcc acaactactc
     4561 ctaggctaac aataactgac tttgtcataa acattgccaa acccatccca acaagagcgg
     4621 agccgacttg ttctcctaga taagaaccat gcaattcgat aaaacgcatc cctgctatcc
     4681 gcttgatggc tatttctctt ttgaaggtct caaagtatag aagattcatc gtattgaaca
     4741 atagtatgga agtgaatatt ccaaggattg tcggagatag ggtcataaga atttcaagtt
     4801 gaacattttt tctcagggtg ttgtactgtt gcctgctaga taacaagcta cctattgtgt
     4861 ttcgtaaatt gtatttctcc aacagctgtt ccagcatctc tttatctttg aaaaatacaa
     4921 aatctggtaa ggcattttcc caaaaatagg acgtttcttc aaaactttca ggtgatagaa
     4981 caacaatcaa cggagcctgt aaaaattgct cataatttat cggagtatga ttgtaaatga
     5041 accatcgctt ctcgtctgaa atgtaataaa cgtttgaata caaacttatg gatttttctc
     5101 catccgcaag caatttccct accatgtcct caaaataagc ttggtaaaca ctcgcatcat
     5161 tttgcaaact ctttggtaat aataatgcaa tttctccttt acctaattgc tttatctctt
     5221 ccagctgctt gaaatcgtac aggccacctt ctgattgtat atagttcggc gtcacataca
     5281 gcaccctttc tagagaaatt tccttgctgg attcaatgat ggtatgttct tttattgtgt
     5341 tatgccgttc ttaaaaaacg actagcaatc tgccaactcc tcacccctga aagcatctct
     5401 atacctgccg accgcaagta gacagtctgc ccaactactg tcaatgcaag attggtgagt
     5461 ataaagataa taaggcctaa gctcggagct cccctaccaa gaaatagact taaactgttt
     5521 aatagggtcg gtctataaat atagctatcc accaatccca gtgactgtaa gacgttttct
     5581 accactttga tgtccagatt cccttttaca acatagtaat tttcagctaa gttggcctga
     5641 ctagctacta acctatccgc tttgaccaag ccctgtggaa gctccccctt cccaaaaaca
     5701 tcataactgg tagtagttcg cccactatca tctgtttctg ttattgtctt agcaattaga
     5761 ctattttcct tttcagctaa atttgtcagg gcatccgaca cttcttcata ggtcacttct
     5821 tcccctcgac ttaatatgga aaccgatgga tagtaatgat aaattaaaga atcgagttgt
     5881 agactcacta accatataca gaagagacag acgctaaaag tagataaata agtaaatact
     5941 tttttcataa cgaacctcat ttgcacaaaa aggaggtgga ctccaccacc tccctatcat
     6001 tagaacccgt aaccaaaatc aacatgtttt ccaaagttta ttgtatcact tcgctattat
     6061 ctctatctta acatataaac aaaacaaaaa caaggttgct tgcattctta ccatgccgta
     6121 cgcatgaaga aaatgcgtat aaccatttcc tagacatctg cattttcaaa gcgttttcat
     6181 gaaaccaata cttcaaccag gatcgtcttt catttccaaa gctataaaca gttttctacc
     6241 aaaaacggat gccaacagca agaaaatagt tttgaaaacg aaaatttctt tattcgcttg
     6301 ttatgcgtaa ctatatctca gcttaacttt gggtgattgt atcatacaag ctgctgtgtt
     6361 tatccacggc ttcttcaatc cctgtacgta cactcccttt gatactggtt tccaaccgtc
     6421 ctctcatcgt ttgaatcgtt tgcttcgttt cgctggctat cttctgaatg tctgtcttcc
     6481 ctgttctttt tatagtgtcg cgtttatcca acaagactct agcctgcatt actatgcgat
     6541 agcgctctat tttccgccgt agttctcgga aagagaaatc aggatctata tcggtatagt
     6601 aatcattcaa gtccatttga atagtccctc cttaattggc taatagtgtc ttctaagcgg
     6661 tagaggtctg tccgatattg ctgggacagc ctctcctcct gttgaaacag ttgatccatc
     6721 tcttgacggt actgataaaa ggattcttct tgtaattgat ccaactcttg aaaaaaggac
     6781 aaggccgcat cataatccaa ggaatgacga ctgagaaagc aacgcatctc ttcctgttct
     6841 ctttctatca agagttttaa agcattctga cgctgttcta ggtcttcttg acgtgcttca
     6901 atcttatttt tctcttggtt atagtcatcc tccagatcaa ataattcttg ctctcgctta
     6961 cggattcttt cccatattac atctgattcc atttctcaaa atctcctgct agtctcttat
     7021 ctgtttccag cattgtgttg attgcttgaa taatttgagt gtccaagatg gtgaactttt
     7081 ctgtagctat ctctgccctc tgccgatata tatccatagt ctcttcaatc tctctgacaa
     7141 tggtttcctg actaacacca tactctgaga aaagggcaca aacttcccaa tagctgagag
     7201 ctgaatagga atgaaaatca atcgaattcc acaactcctc tgcttggtgt acatagtcat
     7261 cgcaatgggc aaaaatactc atttgccctg catctgcaac actagcaatc cctgctgaga
     7321 tggttctggc ctgctcactg tccaaaaaaa tctcctcact acgacttagg ccacctttag
     7381 ataaggctgt tttctgcttt ttccagcgtt tcatagccaa acgagtatct tccaaaggag
     7441 caccagtaaa ggttgatacc acctgaccgt tggcatcaat cagctgacca tatttgttaa
     7501 acttccaagc atttagcatg tgatcagcta tagcatcccc tgggatattc ttcaccgctg
     7561 gataaatagc tgatttcgtc ttatttcccg taatatctcc aaggaagtca tacttatttc
     7621 gatagttacg aaactgtgct ctatgctgct gcatatactc tatttcatct tctgaaatca
     7681 tattgtgaat gtcgggaccg ttaaaggtaa tagcaggaag atctttcttc aaagcaacat
     7741 acatcgccag agagcctcct aacgaatgcc ctgtgattgt gatggttgca tcgggatagc
     7801 gttgtactat ctgatctgca aaagctaccg cagttataga ctgagatata taggggacat
     7861 tctgaccggg aacggtaaaa gtagccgtat tccctccgcc tatcatagaa atatctgttg
     7921 cccaatcttt aatgtcgcca tcattagtcc ctgcgtaggc aataacgact tgggaagtat
     7981 ctggaatcgg tttgttgtca gtgtcgtaac ccttgatcgg agcaaccgcc atggcctgca
     8041 taccgttgcc cgcatcaaca ggtggctcga tgatgataaa actaccattt acaactggag
     8101 tatcttgtat tagtggagtt ttaggtgcct ttaataggtc tacatcataa accactttag
     8161 aaatatctct ataatcttta tccgatatca tggcaactcc ttatagtatt ttacttgtat
     8221 attactaatt tctgttactg tggttgctac tttaggaact aagtaatctc ctgtttgaga
     8281 ttttccacca tttattgtaa tatcatcttc tccccaagat acaaaagtaa catggaattt
     8341 gtcatttata attgcatcac tatcccatgt ccctgtctta ttatcctttt caaaatttac
     8401 aaactctatc ttctcaatcc cttcatagtg attgacggcg tacaaaacca tccgctcttg
     8461 ttcctttcgg atttgagcct gcaatttttc ttcctcactc atacggtgaa aactaaacat
     8521 tatcattcct cctattgcga tacaaatggc actcataacc agtatgaggc ggggacattt
     8581 tttggacata taaaacctcc ttaagttgat tatactataa atactcggta tttacactag
     8641 aatcaggata aggaaaactg gcaataacga cttgggaagt atctgggatc ggtttgttgt
     8701 cagagtcata gcccttaatc ggagcaaccg ccatggcctg cataccgttg cccgcatcaa
     8761 cgggtggctc gatgatgaca tactgccctt gtcctgctct accgccttgt tttaaagtgt
     8821 catctgtttt caacggatct actttatata catcatctgc aatccagcga taatcctgat
     8881 ctgttatcat tagttatccc ccttaaaata gattacctca atgtgatttg gatttgaaat
     8941 ggttgtcggc ttgtctttaa ttcgtaaata caaacctgtt ttgtctgaag gaccatcatt
     9001 catcgacaaa tctccatcaa atcccattgc tgttatcgta actttataat catcatttaa
     9061 tatagcacct gcataccaag cacctgtcat cctattttct ctaaaactgg taaactcgat
     9121 cttctcaatc ccttcatagt gattgacggc atacaagacc atacgctcct gttccttacg
     9181 gatttgagcc tgcaacttct cttcctcact catgcgatga aaactaaaca ttatcattcc
     9241 tcctattgcg atacaaatgg cactcataac cagtatgagg cgggtacgtt ttggggacat
     9301 ataaaacctc cttatgttga ttatactata aatactcggt atttacacta gaatcaagat
     9361 aagaaaacta tcttatacta ggcaataacg acttgggaag tgtctggaat cggtttgttt
     9421 tcagcatcgt agcccttaat cggagcaacc gccatagcct gcataccatt gatcatatct
     9481 tggggctggg agaggatgac gaatttatct tgtgcgactc ggtccccatc cttaaaagtg
     9541 tcatctgttt tcaacgggtc tactttatat acatcctcag caatccagcg ataatcctga
     9601 actgttatca ttggttatcc ccctcaaaat agattacctc aatttgattt ggaattgaaa
     9661 tggttgtcgg cttgtcctta attcgtaaat acaaacctgt tttgtctgaa ggaccatttg
     9721 tcatcgacaa atctccgtca aatcccattg ctgttatcgt aactttataa tcgtcattta
     9781 atatagcacc tgcagaccaa gatcctgtca tcttattttc ttcaaagctg gtaaactcga
     9841 tcttctcaat cccttcatag tgattgacgg catacaagac catccgctct tgttcctttc
     9901 ggatttgagc ctgcaacttt tcttcctcac tcatgcggtg aaaattaaac atcatcattc
     9961 ctcctattga caggaacaac aaaccggtga ataaaactag tcgttttttg catacaaac
//
LOCUS       DASGBY010000067         9917 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.067, whole genome shotgun sequence.
ACCESSION   DASGBY010000067 DASGBY010000000
VERSION     DASGBY010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9917
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.067"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(227..1249)
                     /gene="ilvC"
                     /locus_tag="U1396_001277"
     CDS             complement(227..1249)
                     /gene="ilvC"
                     /locus_tag="U1396_001277"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006145054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEM5342468.1"
                     /translation="MTVTMQYEKDVTVAALDGKRIAVIGYGSQGHAHAQNLRDTGHDV
                     IIGVRAGKSFDKAKEDGFETFEVAEAAKQADVIMILAPDEIQADLYNEEIAPNLEAGN
                     ALGFAHGFNVHFEFIKVPADVDVFMCAPKGPGHLVRRTFEEGFGVPALYAVYQDATGN
                     AKHIAMDWAKGVGSARVGLLETTFKEETEEDLFGEQAVLCGGLTALMQAGFEVLTEAG
                     YAPELAYFEVLHEMKLIVDLVYEGGFKKMRQSISNTAEFGDYVSGPRVITDQVKENMK
                     AVLADIQSGKFANDFVNDYKAGRPRMEAYRKEAENLEIEKVGAELRKAMPFVGRNDDD
                     AFKIYN"
     gene            complement(1381..1857)
                     /gene="ilvN"
                     /locus_tag="U1396_001278"
     CDS             complement(1381..1857)
                     /gene="ilvN"
                     /locus_tag="U1396_001278"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEM5342469.1"
                     /translation="MRRMLTAKLRNSSGVLNRFTGVLSRRQINIESISVGPTEVDGIS
                     RVTVIVDMVSHDEVEQIIKQLNRLIDVVRVRDLTDIPHLEREVILVKISAPPTKRAEI
                     LAIIQPFRANVVDVAPHSITIQMTGDGDKIDALLRVIQPYGIKNIARTGATGFSRD"
     gene            complement(1850..3553)
                     /locus_tag="U1396_001279"
     CDS             complement(1850..3553)
                     /locus_tag="U1396_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEM5342470.1"
                     /translation="MQEIQLDQPRSGSYLILDTLHQLGVDLVFGYPGGAVLPLYDAIY
                     QYEGIQHILARHEQGAVHEAEGYAKSSGKVGVAIVTSGPGATNAITGIADAMGDSVPL
                     LVFTGQVATRGIGKDAFQEADVLGMTMPITKYNYQIRDTADIPRVITEALHIATTGRP
                     GPVVIDVPKDIQERVVDFYHDPTLHLPSYQPTIEPNGLQVKKILKQLSQAQKPVILAG
                     GGVNYADANKELVAFAERYRIPVVSTLLGLGAMPIEHELSLAMGGMHGSYAANMAMDQ
                     ADYIINIGARFDDRLTGNPTTYAPNATVAHIDIDPAEIGKVVKTAIPVVGDAKATLKA
                     LLALETVETGYADWTAQVLENKRRAPFWYDEDEKVIKPQVAIELIGQLTQGDAIVVTD
                     VGQHQMWAAQFYPYKHARQLVTSGGMGTMGFGIPAAIGAKLANPDKEVIIFVGDGGFQ
                     MTNQELAILNGYGVPIKVVLINNHSLGMVRQWQESFYEKRRSQSVFDDEPNFQLLAEA
                     YGISHYSFDNPATLSEDMKVILEDKPMLIEVHISNREHVQPMVPAGKSNAEMLGVKFN
                     A"
     gene            3778..4827
                     /locus_tag="U1396_001280"
                     /pseudo
     CDS             3778..4827
                     /locus_tag="U1396_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917313.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
     gene            4817..5750
                     /locus_tag="U1396_001281"
                     /pseudo
     CDS             4817..5750
                     /locus_tag="U1396_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002918105.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
     gene            6303..8018
                     /gene="ilvD"
                     /locus_tag="U1396_001282"
     CDS             6303..8018
                     /gene="ilvD"
                     /locus_tag="U1396_001282"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM5342471.1"
                     /translation="MTDTNKLKDFRHRSSVYDSMVKSPNRAMLRATGMTDDSFEKPIV
                     GVISTWAENTPCNIHLHDFGKLAKEGVKDAGAWPVQYGTITVADGIAMGTPGMRFSLT
                     SRDIIADSIEAAMGGHNVDAFVAIGGCDKNMPGSMIAIANMDIPAVFAYGGTIAPGNL
                     NGKDIDLVSVFEGIGKWNNGDLTAEEVRQIECNACPGPGGCGGMYTANTMATAIEVMG
                     MSIPGSSSHPAESPEKKADIEEAGRAVVRMLELGIKPSDIMTREAFEDAITVTMALGG
                     STNATLHLLAIAHAANVELTLEDFNDFQERVPHLADLKPSGKYVFQDLYNVGGVPAVM
                     KYLLKNGFLHGDRITCTGKTVAENLENFADLTPGQDVIMPLENPKRADGPLIILKGNL
                     APEGAVAKVSGVKVRNHTGPAKVFDSEEEAIEAVLTDEIVDGDVVVVRYVGPKGGPGM
                     PEMLSLSSMIVGKGQGDKVALLTDGRFSGGTYGLVVGHIAPEAQDGGPIAYLRTGDLV
                     TVDQDTKEITMHVSDQEIEERKKTTVIPPLYSRGVLGKYAHTVSSASKGAVTDFWRPE
                     RTGKK"
     gene            8069..8455
                     /locus_tag="U1396_001283"
     CDS             8069..8455
                     /locus_tag="U1396_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342472.1"
                     /translation="MKLNVELSRFRVKEGKSVQVDEWMVFLNEHMEDTLLTLEGEKMY
                     VETIFREVLDGREYLYWYSVQAEGGIEVEDSESYIDKKHLEYWEECIDPSYGMVGLDP
                     QVIMIHKTIYETMEELDRQYDETFKK"
     gene            complement(8482..8823)
                     /locus_tag="U1396_001284"
     CDS             complement(8482..8823)
                     /locus_tag="U1396_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003080443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF59 domain-containing protein"
                     /protein_id="HEM5342473.1"
                     /translation="MREDIQINERALTISEQLVEVLESIYDPEIELDIYNLGLIYEIH
                     LDEAGFCKVVMTFTDSGCSCADTMPGELVAALKTIDGINDAQVEIVWSPAWKMTRISR
                     LGRITLGISPK"
     gene            complement(8915..9364)
                     /locus_tag="U1396_001285"
     CDS             complement(8915..9364)
                     /locus_tag="U1396_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEM5342474.1"
                     /translation="MELKDIMHILEDMKVGVFATLDEYGNPHARHAHITAANEEGIFF
                     MTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQ
                     HIYKDESSDTMQVFQIYAGHGFYHSLTQGHKYIFSIGQGEHSEVRAL"
BASE COUNT         2876 a         2241 c         1922 g         2878 t
ORIGIN      
        1 atttaaacta ttattatgtc attttataaa aaccgaactt ttttattttt ttaatgtatt
       61 catgaatgaa atgggcaaaa gagccggaaa aaaccagctc ttttattcat tttcagagat
      121 aggggaaaaa agggaatgac atcccctcat ccgccaaccc aaaccttaaa tgtattgcca
      181 tcactcaaag taaagctgac tatcccccta tctaccatga ttgtgtttaa ttatagattt
      241 tgaatgcgtc gtcatcattg cgtccgacaa atggcattgc tttgcggagt tctgcaccta
      301 ctttttcgat ttcaagattc tctgcttctt tacgataagc ttccatacgt ggacgacctg
      361 ctttatagtc atttacaaag tcatttgcaa atttaccaga ttgaatatct gcaaggactg
      421 ccttcatgtt ttctttgact tggtctgtaa tcacgcgtgg acctgataca tagtcaccaa
      481 attcagcagt gtttgaaata gattggcgca ttttcttaaa gccaccttcg tagacaaggt
      541 caacgatgag tttcatctcg tggagaactt cgaaataagc caattctggt gcataaccag
      601 cttctgtcaa gacttcaaaa cctgcctgca taagggctgt caaaccaccg cagagaacag
      661 cttgctcacc aaacaaatct tcttctgtct cttctttgaa agttgtttcc aaaagaccaa
      721 cacgggctga accaacacct tttgcccagt ccatcgcaat atgttttgca ttgccagttg
      781 catcttggta aacagcatag agggctggta ctccaaaacc ttcttcaaag gtacggcgga
      841 ccaagtgacc tggacctttt ggtgcacaca tgaagacatc cacatctgct ggtaccttga
      901 taaattcaaa gtgaacgttg aaaccatggg caaaaccaag agcattgccc gcttccaagt
      961 ttggagcgat ttcttcattg taaaggtctg cttggatttc gtctggagcc aagatcatga
     1021 taacatctgc ttgttttgct gcttctgcta cttcaaaagt ttcaaaaccg tcttcttttg
     1081 ccttatcaaa tgacttacct gcacgcacac cgatgatgac atcgtgccct gtatcacgca
     1141 agttttgagc atgggcatga ccttgtgaac cataaccgat aacggcgata cgtttaccgt
     1201 caagtgctgc tactgttaca tctttttcat attgcattgt tactgtcata attttttctc
     1261 ttttctattt ttatttgtag ttttggatgt tcaaagaaaa tgaaggctag actaggcgaa
     1321 gatagaacta acgttcatca agcgaagtca acgcaggata ggttttatta tcgaaaagga
     1381 ttagtctcta ctaaagccag tcgcacccgt tcttgcgata ttcttgatgc cataaggctg
     1441 aatcacacgc aggagggcgt caatcttatc tccatcacct gtcatttgaa tggtaatgga
     1501 gtgcggtgcc acatcaacaa catttgctct aaagggttgg ataatcgcta aaatttctgc
     1561 tcgttttgtt ggcggagctg aaattttaac aagaatcacc tcacgctcta agtggggaat
     1621 gtccgtcaaa tcacggacac ggaccacatc aatcaagcgg ttcagctgtt tgatgatttg
     1681 ttcgacctca tcgtgactga ccatgtctac aatcaccgtc acacgtgaga tgccatctac
     1741 ttctgttggg ccgacggaga tggactcaat attgatttgg cgacgagata ggacacctgt
     1801 aaaacgattc agaacaccag atgaatttcg caatttagct gttaacattc tacgcattga
     1861 acttcacccc caacatttct gcattgctct tacctgctgg caccatcggt tgaacatgtt
     1921 cacgattaga aatatgaacc tctatgagca ttggtttatc ttctaagata actttcatgt
     1981 cttcacttag agtcgctgga ttgtcaaaac tataatgact aattccgtag gcctctgcca
     2041 acaattggaa attcggttca tcgtcaaata cagattggct acgacgcttt tcatagaagg
     2101 attcctgcca ttgacgaacc attccaagag agtggttatt gattaataca accttaatcg
     2161 gtacaccata gccattcaaa atagccaatt cttggttggt catttggaag ccaccatcac
     2221 cgacaaagat gattacttct ttatctggat tggctaattt ggcgccgata gctgcaggaa
     2281 taccaaagcc catggtcccc atgccaccag atgttacaag ttgacgtgca tgtttgtagg
     2341 ggtagaattg agcggcccac atttgatgct gaccaacgtc tgtcacgaca atggcatccc
     2401 cttgcgtcaa ctgaccaatt aattcaattg ccacctgtgg cttaataacc ttttcatctt
     2461 catcatacca aaatggtgcc cgacgtttgt tttccaatac ttgtgccgtc caatcagcat
     2521 agcctgtttc gactgtttct aaagcaagta gagctttcaa ggttgcctta gcatcgccta
     2581 ctactggaat agccgttttg acaactttac caatttctgc gggatcaata tcaatatgtg
     2641 ctaccgtcgc atttggcgca taggttgttg gatttcctgt taggcggtca tcgaatcgcg
     2701 ctccaatatt gataatgtaa tcagcctgat ccatagccat attggcagcg tatgaaccgt
     2761 gcatcccccc catagccaag gataattcat gctcaatggg catcgcacct aatccaagga
     2821 gggttgaaac tactggaata cggtagcgct ctgcaaaggc aactaattct ttattggcat
     2881 ctgcataatt gacaccacca ccagccaata taactggttt ttgagcttgg ctaagctgtt
     2941 tcaaaatttt cttaacctgc aaaccatttg gttcaatcgt tggctgataa cttggtaggt
     3001 gtagagttgg gtcatgataa aaatcaacaa ctctttcttg gatatctttt ggaacatcaa
     3061 taacaacggg acccggtctc cctgttgttg caatatggag agcttctgtg atgactctag
     3121 gaatatctgc cgtatcccga atttggtaat tgtacttggt aatcggcatt gtcatcccca
     3181 agacatctgc ttcctgaaaa gcatctttac cgataccacg tgttgcgact tgaccagtaa
     3241 aaactaaaag aggaacacta tcacccattg cgtccgcaat tccagtaatg gcattggtag
     3301 ctcctggccc agaggttaca atggctacgc ccacctttcc tgatgattta gcgtatcctt
     3361 cggcctcgtg gaccgctcct tgttcatgac gagccaaaat atgctggatt ccctcatatt
     3421 gatagatagc gtcatataga ggcaaaactg ccccaccagg ataaccaaaa acaaggtcta
     3481 ctcctagttg atgcagggtg tccaaaatga gataggaccc cgaacgcggt tggtctagtt
     3541 gaatttcttg cacgaatatt cctcctctct gcaaatttgt tatctactat aatatcacaa
     3601 ggaagtagaa tgtcaaggaa ttttctgaaa attcctacat ttgttcgttt tcttaactat
     3661 ttcctaacat ttcttaagca aaacttaagc aaatcccttg actggcttgg tttcagcttg
     3721 ctttcagaaa acatcagtat agtagttcca ctaaaaaaat taaatgaggt ttaggatatg
     3781 tattatgtag tgataccggc ttaccagcca gatgaaaaat taatccaact attagaaata
     3841 atgaaaaaca ggctaaattg tcaggttatc gttgtggatg atggtagtac tggcgcatcc
     3901 aaaaatattc ttgaaatcgc caaaacctat gcaattgttc tccaccatga tgtcaacaaa
     3961 ggaaaaggcc aagccttgcg aacagccttt agtttcatcc aagatttgag aaaaccaggt
     4021 gttatcgtaa ctgctgacgc agatggtcaa cacactgtaa atgatattga ccgtgtcgca
     4081 cgcgccgcca tgaatctacc aagccgcctg attcttggtg ttcgtcaatt tactaaagac
     4141 atcccgctcc gtagccgatt tggtaacaaa ctaaccagag tattgtttag attgcaaact
     4201 ggtgtcaatg tgtccgatac ccaaacaggc ttgcgtggat tccatactga cttaattcca
     4261 ttcatgttag atattgaagg cgaccgctat gagtacgaga tgaacatgtt aactcaggca
     4321 agtcaacgct ataaaattac ggaagttcca attcaaacta tttatatcga tgataatgcc
     4381 agttcgcatt ttcgtcccat aaaagatgga ctgctcattt acaaaaatct cttcaaattt
     4441 gccctggcat cttttggtgg atttctagtt gactacggaa tatatgcact tgccttattg
     4501 ctactcacta gcttaccaac tgctctacgc ttattggtcg caaacacgat tgctcgcatt
     4561 tgtagcgcta cctgtaattt tgcacttaat aagaaattag tctttaacaa tgaagagagc
     4621 atcgcacgaa caggcgcagg ctactttaca ctagcccttg tcctcttcct ttgcgataca
     4681 gccctcctct atctcttcca ccaaattcta ggacttaacc tctacattgt caaacttgca
     4741 gttgatatct tccttttcct agcctcttgg tttgttcaaa agaatattat ttttaaagaa
     4801 aggaaatcat tttcccatga aattgctaaa aaaaaccttt gcctacgcag ccatcttcgg
     4861 aatgcttttg acaggaggct ttacttactc catgttaaaa accttcgtgc tttccgaggc
     4921 tatcacaacg gttgctgcaa gtaatgccac agccaatagc cagaacacag ctacttcatc
     4981 gtcatcaact gccgcaacca ctgcaactaa tgtctctaca acggatacta gttactctga
     5041 tgataatatt cagataaatt tagagacgat taccaccaat aacacaactg tttacgtcgc
     5101 agatattcag gtcagctctc cagagtattt aaagacagct ctagcccaaa atacctatgg
     5161 cacgaacgta acagctaaaa cttctgaaac tgcgacagca aacaatgcca ttctagcggt
     5221 taatggtgac tactacggag ccaattcaac tggttatgtt attaagaatg gcgttctcta
     5281 tcgcgacact gttcgtgaca atgctgctta cggcgacttg gcaatctacg ccgacggctc
     5341 atttgaagtc atctatgaaa atgaaatcac tgcccaggaa ttgattgaca agggtgtcgt
     5401 caacctctta gcattcggtc catcattggt agagaatggc gaaattgtcg tcgatacttc
     5461 aacagaagtc ggacgtgcaa tgtcatccaa ccctcgttct gctatcggga ttatcgatga
     5521 aaatcattat atcatcgtcg tagcagatgg acgtacgtct gaaagccaag gactctctct
     5581 atcaattggc agaagttatg aaacaatatg gtgctcaaac tgcctacaac cttgatggcg
     5641 gtggttcatc cactctttac tttaacggtc aagttattaa caacccaata acaaatggaa
     5701 atactatctc agaaagggcg gtgagtgaca ttgtctacat cggttactaa ttcaactaca
     5761 agagtttcaa gaacatttat ctcctactta gcaataacag ctttcctgtt tattttcagt
     5821 cgaatctatg aaagtctcag ctatggcgaa gtctctgtct ttatgcatta tatgttctgt
     5881 ataccattaa taggcggagc tgtgctactc ggtctgctgc aacttatacc taccctttca
     5941 cgtctctctt ataatttgtg gaattctggc gttgcaacta ttacagctgg ttgtcttctc
     6001 caaggcatta tcaacctatc tggacgttca actaccttag atcaacctta ttggtacatc
     6061 ggcgcagcct tcctagttct atctttagtc agtcttttta tcaatccatc cgcaaaacaa
     6121 tcgtcgaaaa acgaccactt aatctacaaa taaattgtaa tggcacttaa cattcttagg
     6181 tgccttttac tgtagaatga attgttgaaa aattcggaaa tttccaatta tttatcagat
     6241 cttttatcgt ttctttcata tctatgatat aatgggtaaa ataagatagg gagaagaaaa
     6301 ttatgaccga tacaaacaaa cttaaagact ttcgacatcg cagctctgtt tacgattcga
     6361 tggtcaaatc gcccaaccgt gctatgttgc gtgccacagg catgaccgat gatagctttg
     6421 aaaagcctat tgttggggtt atttcgacat gggctgaaaa cacaccctgt aacatccacc
     6481 ttcatgactt tggaaaatta gccaaagaag gggtaaaaga tgcaggtgcc tggcctgtcc
     6541 aatacggtac catcaccgtt gcagacggga ttgccatggg aactcctggt atgcgcttct
     6601 ccttgacttc acgtgatatc attgcagatt ctattgaggc agctatggga ggacacaacg
     6661 tggatgcctt tgtcgcaatc ggtggctgtg ataaaaacat gcctggttcc atgattgcca
     6721 tcgccaacat ggatatccct gctgtttttg cctacggcgg aaccattgcg ccaggtaatc
     6781 tcaatggtaa agacatcgac ttggtatccg tttttgaagg aatcggaaaa tggaacaacg
     6841 gtgacttgac cgctgaagag gttcgtcaaa tcgagtgtaa tgcctgtcct ggacctggtg
     6901 gttgcggtgg tatgtacact gccaatacca tggctactgc cattgaggta atgggcatgt
     6961 ctattcctgg ctcttcttct caccctgctg aatcaccaga gaaaaaagca gatattgaag
     7021 aagcaggtcg ggccgttgtc cgcatgttag aactaggtat caaaccatct gacattatga
     7081 cgcgtgaagc ctttgaagat gccattacag tcaccatggc actcggtggc tccaccaacg
     7141 ctactctgca cttgctggcc attgcccatg ctgctaatgt tgaattaaca ctggaagatt
     7201 tcaatgattt ccaagaacgc gtgcctcact tggcagacct gaaaccatca ggaaaatacg
     7261 ttttccaaga cctctacaat gtcggcggcg tcccagctgt catgaaatac ttgctcaaaa
     7321 acggcttcct tcatggcgac cgcatcacat gtacaggtaa aaccgttgct gaaaacctag
     7381 agaattttgc agacttgact ccaggtcaag atgtcatcat gccacttgaa aatccaaaac
     7441 gagcggatgg cccactcatc atcctcaaag gtaaccttgc tcctgaaggt gccgttgcca
     7501 aggtttctgg tgtgaaagtc cgcaaccata caggtccagc caaggtcttt gattcggaag
     7561 aagaagctat cgaagctgtc ttgactgacg aaattgtaga tggcgatgta gtcgttgtcc
     7621 gctatgttgg accaaaaggc ggtcctggta tgcctgaaat gctgtccctt tcttctatga
     7681 ttgtcggaaa aggccaaggt gacaaggtag cccttctaac agacggtcgt ttctctggtg
     7741 gtacctatgg actggttgtt ggacacatcg cacctgaagc tcaggatggc ggtccaattg
     7801 cctacctccg tacaggtgat ttggtgacgg ttgatcaaga taccaaagaa atcaccatgc
     7861 acgtttctga ccaagaaatc gaagaacgca agaaaaccac tgtcattcca ccactctact
     7921 ctcgtggtgt tctcggcaaa tacgcccaca ctgtatcctc tgcctctaaa ggagccgtta
     7981 ccgacttctg gagaccagaa cgtacgggga aaaaataagg aactaaacga ccctgtcctc
     8041 gcggcagggt tttccaaaag gagaaaaaat gaaactgaac gtcgaactct cccgttttcg
     8101 tgttaaagaa ggcaagtccg ttcaagtgga tgaatggatg gtctttctca acgagcacat
     8161 ggaagacacc cttctcactc ttgaaggaga gaaaatgtat gtcgaaacca tcttccgtga
     8221 ggtattggac ggacgcgaat acctctattg gtactctgtc caagctgaag gagggattga
     8281 agtcgaagat tcagaatcct atatcgacaa aaaacattta gagtattggg aagaatgcat
     8341 cgacccgagc tatggtatgg tcggtttgga tccgcaagtt atcatgattc ataaaactat
     8401 ctatgaaacc atggaagaat tagacagaca atacgatgaa acatttaaaa aatgagctgc
     8461 tccatgcaac tcattttctt tttatttagg actgatacca agcgtaatgc gtccaagacg
     8521 gctgatacgg gtcatcttcc aggcaggaga ccagacaatc tcgacctgtg catcgtttat
     8581 accatcaatc gttttcaagg ctgcaaccaa ttcaccaggc atagtatccg cacaagaaca
     8641 acctgaatct gtaaaggtca taacaacctt acaaaaacca gcttcatcta aatgaatctc
     8701 ataaatcaaa cccaaattgt agatgtctag ttcaatttca ggatcgtaaa tagattccaa
     8761 aacctctacc aactgttctg atatagttaa cgcacgttca ttaatctgaa tatcttctct
     8821 catcaagttc aaacactcct aaaatattta taagaagtat tgtatcataa ttatttgaaa
     8881 tatacttgtc ttatcaaatg ttttcaacta gttttcaaag tgcacgaacc tctgaatgct
     8941 caccttgacc aatagaaaag atatacttat gaccttgagt caagctatga tagaagccat
     9001 gaccagcata aatctgaaat acttgcattg tatcactaga ctcatcttta tagatatgtt
     9061 gataataagg attatccgca aaaactgtct ttagatagtc gttctccaca ggtctggcag
     9121 tcccttctac acgcactacc tggataaggt acccttcctc agaaatagcc gtcattgcaa
     9181 ctctttgatc ccccatcaat tgatcataga aatgcgtttc tgggcttgtc ataaagaaaa
     9241 tcccttcttc gtttgctgca gtgatatgag catgacgagc atgtggattt ccatactcat
     9301 ccagagtagc aaaaactcca accttcatat cttccaaaat atgcataata tcttttagtt
     9361 ccatggtatc accccttgaa aatacctatt ttctaaacta tatcaaaaac aagcgaaaat
     9421 gttaagtgga atattgatag aaatggtgaa agtgtttcat gaataactcc ctactgacgg
     9481 aaccaattaa gaaggtagct atgtttgctt cattttcaac cttcaaaggt tcctcaaccc
     9541 ttttgattcc caattggtat ggatttgact actgaaccga ttatgacaac aatcaaaatc
     9601 cgtcgttact ataaaaacta cctaattata aaaaagtgac tcttgagtgc tttgaaacgt
     9661 tgatatttcg cggtatatta acgtttacta aactggcttg ctttacgtgc tttcttaaga
     9721 cctggttttg ggtgacagaa gtaaaatgcc tataaaagat tattaaatca agctttcaaa
     9781 gtccattttc atcacattta accacttata actcaatcat acaaacaatg gattaccatt
     9841 agattaccaa aaatctgttt tcggagctta tgtgattgag gaacaacatt actgacaatc
     9901 tctatcttca caattta
//
LOCUS       DASGBY010000068         9895 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.068, whole genome shotgun sequence.
ACCESSION   DASGBY010000068 DASGBY010000000
VERSION     DASGBY010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9895
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.068"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            216..4475
                     /locus_tag="U1396_001286"
     CDS             216..4475
                     /locus_tag="U1396_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HEM5342475.1"
                     /translation="MKKETSKFTKKVILGQLLICTSFLVWAGQTVAAEEVSQGEPVAI
                     NNETPPAIEAKPLVEATPSTETEPSTPEEKQEEPQVADKNVVEGKKPVTNSQHQMVSE
                     LSTVPSVSIKNPDAATDGSAYGSSDDANSNTKIIAGKETGESDNGYSKWDHVYVQYDF
                     EKEVPVHTVKIHRNTYDNAVSTFKDVKVELSTSVDFSPETTEVIFKQADVEETIANKG
                     QPQVIQLPAPINARYIRIWGRGHYIQNTNSSWKGYSNGVLFNEIEVLAQVEADAGTNE
                     EPQTELVNLAKLKKPYFYGKAPTNPEAINDGKFDENYTTQESIGDKAYLQYEFRNVYT
                     IEEIKVQLAPGEYRNFRIDLDDDYNDGNNYNTIYKNENFTIDKEQIITIKTPKNSKAR
                     YVRFRGTRVDDTPLRYSEIQIMGRGKSYDESAPEYVPPKSEYDTLVWSDEFNGDKIDE
                     SKWQIIDGMWNHAAIYNRKAVSIKKDGDKSYLSIRSTNHKDKKALVEAVGHDRYDDKE
                     LPDKVTWSSGRLESKDKYSFQFGRMAVRAKVNDSKGIWPAIWMLAQDETGHDEIDVLE
                     YLGQNPWDAWTTNHFGILAKNKKSDGSAYKNYEAWSQEFHVYEVEWTPDVIKWYIDGK
                     FVFQTDRGKDRDGMHTRPMFPILETQVGDGWVGDVDYKRNMTKQDSEYLVDWVRIYQK
                     ADQSKVHFDNLDDAKPNDYVIKPQQKLGHLVTVSNGKAAHENKNNFYYGGQPRYETSR
                     LYADGDGENALVYKIANPEALHLTTYYKTLEDYSVYNKEAGANEGKSVRKHLINAKDG
                     EIDFTVYSSVDGKSWNKENVTVVDNFVEATPAYARTTFDIRNIRKGTKFVKIVFPTVK
                     GISYKLEDGTEKGLQASDVQLAKVTFVATHPEAEPEKPIVDQEKLALSKVFSLDAGRK
                     YFSVNQIKEIIDLISSYGYTDMNLLLGNDGLRFLLDDMNLTVGDKVYDSEAVRKAIIN
                     GNKHYYDDPNGTTLSQSEMDDILAYAKEKNISIIPTINSPGHMDAIVEAMEELGIKSP
                     KFSYNGKTSARTVDLKNDQAVAFTKALIDKYASYFAGKSKIFNIGLDEYANDATNASG
                     WHILQTQGDYGKFIQYANDLAAIVKKHGLEPMAFNDGIYYNHDTSSGTFDKDIIASFW
                     TGGWGGYDVASSKFLHEKGHKILNTNDAWYYVIGREAEGLGWYNLDQGLRGTKSTRFD
                     QVPKSENTKVPIIGSMVAVWADDPSKPYSYDSIKKLLHSFTENNSDYFWAEYRDLREE
                     VGKIPTDLNSYTPESVATLKEVLNKIDWKLSRNNQAFVDGYLAEVKAAREALVPVTAK
                     GDSVKAEPLPEGKLPLITAKGKSVQAEPRPAFKGYLTSNYGPSVTPLSLVSKPSSEQS
                     RSQQAAYQKKELPNTGAVDGLGFSLLGMLGLAFASRRRKEE"
     gene            complement(4765..5238)
                     /locus_tag="U1396_001287"
     CDS             complement(4765..5238)
                     /locus_tag="U1396_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5342476.1"
                     /translation="MNKIESRHQLILSLIMEKKIHTQQELQELLEINGVSVTQSTLSR
                     DIKMLNLVKVNEDDSSHYVINPIAPTRWEKRLRLYMEDALVMLKPIQHQVVLKTLPGL
                     ANSFGSILDAMEIPQIVATVCGDDVCLIICEDVEGAQACFEHLKQFTPPFFFSKL"
     gene            complement(5302..6330)
                     /gene="queA"
                     /locus_tag="U1396_001288"
     CDS             complement(5302..6330)
                     /gene="queA"
                     /locus_tag="U1396_001288"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEM5342477.1"
                     /translation="MNTADFDFDLPEELIAQVPLEKRDSSKLLILDREKQSMVDSHFD
                     HIIDQLNPGDALVMNNTRVLPARLYGYKPETMGHVELLLLKNTQGNQWEVLAKPAKRL
                     KVGTTVAFGDGRLTATIVEELEHGGRIVEFSYEGIFLEVLESLGEMPLPPYIHEKLED
                     RERYQTVYAKENGSAAAPTAGLHFTQELLEKIEAKGVKLVYLTLHVGLGTFRPVSVDN
                     VDEHEMHSEFYNLSAEAAQTLNQVKDSGGRIVAVGTTSIRTLETIGNKFDGRLEADSG
                     WTNIFIKPGYTFRIVDAFSTNFHLPKSTLVMLVSAFAGREFTLDAYKHAVEERYRFFS
                     FGDAMFIQ"
     gene            6678..7382
                     /locus_tag="U1396_001289"
     CDS             6678..7382
                     /locus_tag="U1396_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM5342478.1"
                     /translation="MKIHVVNNQVEGATVALDILREKLNGDAKVLGLATGSSPLEFYR
                     LIRESDLDFSNVTSVNLDEYVGLGEESDQSYIHFMKENLFNDKPFKKSYLPNGLATDV
                     VAETERYNKILAEHPVDFQILGIGRNGHIGFNEPGAPFDGQTHLVELAPSTIEANARF
                     FDNPEDVPKQAISMGIANIMAAKTIVLMAYGQEKADAIKATVEGAVTEDVPASVLQNH
                     DNVILILDQAAASKLV"
     gene            7719..>9895
                     /locus_tag="U1396_001290"
     CDS             7719..>9895
                     /locus_tag="U1396_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEM5342479.1"
                     /translation="MKLKKLWVYLLTPLLVLFGSGVFANSVKAKELNNVITDVKFWAV
                     AANIEKKPESNDVYDFYVGNDYRFVVDFDLSAYDSKLSNGDTFSFTIPAPFPVTATTF
                     NLIDDSTKIAIGDANVVSNSTGGGGKATITIKNLDEYLKKKNADVVKGVKGTFYINFK
                     FTEAMEQQIISFSSTETKGELSKKIRILKGEKVDFSKEFGKTNYTKIGGTLIQSAWSS
                     QALGKKGDWLHDWAVRLNQKQAAYDTLVVHDTVNMVDYSPMQFIPEKFKVIAGWYDSE
                     YRLLDQAELTKDQYTLTFNESYTDFVLTIPNAKSIQKNGKPAAFRIEYKTTAPADGTM
                     VANKVEVSGNGTLLTIDDDRTDISQEIVANSRITSGGTIQLTTGYRITLYKVDSKTQN
                     RLSGAKFKITPPVGATTAKEEVVTTNADGVAQSPIYTEADVKLGEFTITEVEAPEGYE
                     LDPTPIKVTVGKAGVIKTIKNKRYTTTAQITARKRLLGRELNAGEFEFVLTDQQGREI
                     ETVKNDLYGDIKFKELTFDKEGNYNFTIKEKNANTSDENGITYDEQPVEVAVVVSKDS
                     TGKLTSTVSYANDDNEFNNFYTPSPVDVELEVTKKLTGRKLIEGEFEFVLTENRFPDP
                     TPSRMPARNTVIPTENIVRQKVTNTADGKVKFAPITYDHRGAYQYTIEETNAGKTIDG
                     VTYDSLKVEVTVVVTDDGKGRLVAEVFYSKNTEFNNIYKTSKA"
BASE COUNT         3301 a         1685 c         2118 g         2791 t
ORIGIN      
        1 atgctgtttt agaaatagaa cccatctgca tatagaataa gtcaagttag actattctac
       61 aataaaacgc ttacatgtta tatttgtgtc agaaatgcga tcgcacatca accagtaaac
      121 tgaattttga gtcttatacg agactaaata ggtttaaaaa ctgctttatt ttggctatag
      181 gtaggataaa cttgcagact ttataggagg aaataatgaa aaaagaaaca agtaagttta
      241 cgaaaaaagt catccttggt cagcttctca tctgtaccag ttttttggta tgggcagggc
      301 agaccgttgc agcagaggaa gtatctcagg gggaaccagt agcaatcaac aatgaaactc
      361 cacctgctat tgaagcaaaa ccacttgtgg aagctactcc atcaactgaa acagaacctt
      421 caactccaga agaaaaacag gaggaaccac aagtagctga taaaaatgtg gtagaaggga
      481 aaaagcccgt aactaacagc cagcatcaga tggtttcgga attatcaacg gtcccttctg
      541 tttctataaa aaatccagat gcagctaccg atgggagtgc ttacggtagt agcgacgatg
      601 ccaatagcaa taccaaaatc attgctggta aagaaactgg cgaatcagat aacggttact
      661 ccaagtggga tcatgtttac gttcagtatg attttgaaaa ggaagttccc gtccatactg
      721 taaaaattca tcgtaatact tatgataatg cagtctctac ttttaaagat gttaaagtgg
      781 aattgtctac aagtgtagat ttttctcctg aaaccacaga agtcattttc aaacaggcag
      841 atgtagaaga aacaattgca aataaaggac aacctcaagt catccaatta ccagcaccaa
      901 tcaatgctcg ttatattcgt atttggggac gggggcatta tatccaaaat acaaacagtt
      961 catggaaggg atatagtaat ggcgttctct ttaacgagat agaagtcttg gcgcaggttg
     1021 aagcagatgc tggtacgaat gaagaaccac aaaccgagct agtcaacctc gctaaattga
     1081 aaaaaccata tttctatggt aaggctccaa ctaatccaga agccattaac gatggaaagt
     1141 tcgacgagaa ttatactact caagaatcaa taggggataa agcttatctt caatacgaat
     1201 ttagaaatgt ctatactatt gaggaaatca aggttcagtt agctcctgga gagtatcgta
     1261 atttccggat agatttggat gatgattata atgatggtaa taattataat acaatctata
     1321 agaatgaaaa tttcaccatt gacaaggaac agatcataac gattaaaact ccaaaaaatt
     1381 ctaaggcgcg ttatgttcgc tttagaggta cgcgcgtaga tgatactcct cttcgctatt
     1441 cagaaattca gattatggga cgaggaaaat cttatgacga atctgctcca gaatatgttc
     1501 caccaaaatc tgaatacgat acattagtct ggtctgatga atttaatggc gacaagattg
     1561 atgaaagtaa atggcaaatt attgatggca tgtggaatca tgcggctata tacaatcgta
     1621 aagcagtttc tatcaaaaaa gatggcgaca agagctattt gtctatccgt agcacgaacc
     1681 ataaggataa aaaagctttg gttgaagcag ttgggcacga tcggtatgat gataaagaat
     1741 taccagataa agtaacatgg tcttctggtc gcctagaatc taaagataag tattctttcc
     1801 aatttggtcg aatggctgtt cgagctaagg taaatgactc taagggaatc tggcctgcta
     1861 tttggatgtt ggcacaggat gagaccgggc atgacgaaat tgacgttttg gaataccttg
     1921 gtcaaaatcc atgggatgca tggacaacta accattttgg tattttggca aaaaataaaa
     1981 aatctgatgg ctcagcttat aagaattacg aagcttggag tcaggaattc catgtctacg
     2041 aagtcgaatg gactccagat gtcatcaaat ggtatattga tggaaaattt gtttttcaaa
     2101 cagaccgtgg taaggatcgg gatggtatgc acacccgccc tatgttcccg atactggaaa
     2161 cccaagttgg tgatggctgg gttggtgatg ttgattacaa acgcaacatg actaaacagg
     2221 atagtgagta cttggttgat tgggttcgaa tttatcaaaa agcagatcaa agtaaggtac
     2281 attttgataa tctagatgat gccaagccta atgattatgt tattaagccg cagcaaaaac
     2341 ttggtcacct cgtaacagtc tctaacggga aagcagctca tgaaaacaaa aataatttct
     2401 actatggagg tcaaccacgt tacgaaacaa gcaggctcta tgctgatggt gatggcgaaa
     2461 atgcactagt ttacaagatt gctaatccag aggctttgca cttaacaact tattacaaaa
     2521 cacttgaaga ctattctgtc tataataaag aagcaggggc taatgaagga aaatctgttc
     2581 gcaaacattt gataaatgca aaagacggtg aaattgactt cactgtgtac tcatctgttg
     2641 acggcaaaag ctggaataaa gagaatgtta ctgtagtgga taattttgta gaagcaaccc
     2701 cagcttatgc acgcactaca tttgatattc gcaacattcg aaaaggtact aaatttgtga
     2761 agatcgtctt tccaacggtt aaaggtattt cctataagtt ggaagatgga acagagaaag
     2821 gcctgcaagc cagtgatgtc cagttagcaa aagtaacttt tgtagctact catcctgaag
     2881 cagaaccaga aaaacctatt gttgatcaag aaaaactagc cttgtccaaa gttttttcac
     2941 tcgatgccgg tcgcaagtat ttctctgtaa atcagataaa ggagattatt gatttaattt
     3001 cttcttatgg ttacacggat atgaacctct tattgggaaa tgatggtctg agatttttat
     3061 tagatgatat gaatttgacc gttggagata aggtgtatga cagtgaagca gttagaaaag
     3121 caataataaa tggtaataag cattattatg acgatccaaa cggtacaacc ttaagtcaga
     3181 gtgagatgga tgatattctt gcttatgcta aggaaaaaaa tatttccatt attccaacta
     3241 tcaatagccc aggtcatatg gatgcgattg tagaagcaat ggaagaattg gggataaaat
     3301 cgccaaaatt tagttataat ggcaaaacat ctgcacgtac agttgattta aaaaatgacc
     3361 aagcagttgc ttttactaaa gccttaattg ataaatatgc tagttacttt gcaggcaaat
     3421 ctaaaatttt caatattggc ttagatgagt atgctaacga tgctacaaat gcttctggat
     3481 ggcacattct tcagacacaa ggtgattatg gtaagtttat tcaatatgcc aatgatttag
     3541 cagctatcgt caagaagcat ggtttagagc caatggcttt caatgatggt atctattata
     3601 accacgatac tagttcgggt acttttgata aagacattat tgcttctttc tggacaggag
     3661 gttggggagg atatgatgtt gcttcctcaa aattccttca tgaaaaaggg cataaaattc
     3721 ttaatacaaa tgatgcttgg tactatgtta ttggacgtga agcagaaggt ttgggatggt
     3781 ataaccttga tcaaggtctt cgaggaacta aatcaacaag gtttgatcaa gtaccgaaat
     3841 ctgagaatac taaggtaccc attatcggta gcatggttgc ggtatgggca gatgacccaa
     3901 gcaagcctta cagctatgac tcaattaaaa aacttttgca cagttttacg gaaaacaatt
     3961 ctgattattt ttgggcagag taccgagatt tgcgagaaga agttgggaag attcctactg
     4021 atttaaattc ctatacacca gagagcgtgg cgactttaaa agaggtcttg aacaagattg
     4081 attggaaact aagtagaaat aaccaagcgt ttgttgatgg ttacttggca gaagtaaaag
     4141 cagcgcgtga agcgttagtt cctgtgacag caaaaggaga cagcgtcaaa gcggagccct
     4201 taccagaagg caagctacct ctgattactg ctaaaggaaa aagtgtccaa gcagaaccac
     4261 gccctgcctt taagggatac ctaacctcaa actatggacc atctgtcaca cctttatctc
     4321 tcgtatcaaa accaagtagt gagcagtcac gctcccagca agcagcttat cagaagaaag
     4381 aattgccaaa tacaggcgca gtagatggtc ttggattctc tctccttggt atgcttggtc
     4441 tggcatttgc tagtcgccgg cggaaggagg agtaatgtag ccacttgaat taaggttcag
     4501 ggctttctaa ttgtaattat atagttatct agtttttctt tcactcgctt tgctgtaccc
     4561 aagtatagca tgtagctcat tgccttgtac aaaaagtaaa ctagaaggct atgaataata
     4621 ggataatttt ttataggcta ctaaaaatcc cccgtaataa atcttattac gggagatttt
     4681 cgtttatgag tataaaggga agttgttgat atttatttga aaaattatct ttaaaattaa
     4741 gtatttgttt gtgaacacaa atttttataa tttactaaag aaaaatggtg gagtaaactg
     4801 tttcaagtgc tcgaagcaag cttgtgcccc ctcgacatct tcacaaatga tgagacagac
     4861 atcgtcaccg cagacagtcg ctacaatttg aggaatctcc atggcatcca aaatagaacc
     4921 gaatgagttg gccaatccag gtagggtctt gagcaccact tgatgttgga taggttttag
     4981 catgaccaga gcatcttcca tatagagtcg cagtcgtttt tcccagcgag taggagcaat
     5041 ggggttgatg acatagtgag aagaatcatc ttcattgact ttgacaagat tgagcatctt
     5101 gatgtcacgg gagagggtag attgggtgac ggagactccg ttgatctcta gtaattcttg
     5161 caattcctgt tgggtatgta ttttcttctc catgattaga gacaggatca gctgatggcg
     5221 gctttcaatc ttgttcatag ggccctcctt gagatgtaag gaaaataaaa tctgaactca
     5281 gaataatttg gtgataacag cctattgaat gaacattgca tccccaaaac taaagaagcg
     5341 gtagcgttct tcaacagcat gtttataggc atctaacgta aattctctac ctgcaaaggc
     5401 agaaactagc ataaccaaag tagattttgg taggtggaaa ttggttgaga aggcatcaac
     5461 gattcggaag gtgtagccag gtttgatgaa gatatttgtc caaccagaat cagcttccaa
     5521 acggccatca aatttattac cgatggtttc gagggtgcgg atggatgtcg tgccgactgc
     5581 gacgatacga ccaccgctat ctttgacctg attgagggtt tgagcagctt ctgctgatag
     5641 gttatagaat tccgagtgca tttcatgctc atcaacgtta tcaacagaga ctggtcggaa
     5701 ggtcccaagc ccaacgtgaa gagtcagata gactagtttc actcctttag cttcgatttt
     5761 ttcgagtaac tcttgggtga aatgtagtcc agcagttgga gctgcggcag aaccgttttc
     5821 cttggcataa actgtttgat agcgttcgcg gtcttctaat ttctcatgaa tgtaaggtgg
     5881 aagtggcatt tcgcctagac tttccaagac ttcaaggaag ataccttcat aggagaattc
     5941 aacaattcta ccaccgtgtt ctaattcttc tacgatagta gcagttaatc gtccgtcacc
     6001 aaaagcgact gtggtaccga ccttcagacg ttttgctggt ttggcaagaa cttcccactg
     6061 attaccttgg gtatttttca aaagcaaaag ctcaacatgt cccatagttt caggcttgta
     6121 gccatagaga cgggcaggca gaacacgtgt attgttcatg accagggcat caccgggatt
     6181 caactggtcg atgatatggt caaagtgact gtcaaccatg ctctgttttt cgcggtcgag
     6241 gatcaatagt ttagagctgt cgcgcttttc aaggggaact tgagcgataa gctcttcggg
     6301 taaatcaaaa tcaaaatctg cagtattcat attcactcct tagactaaaa taaaatatag
     6361 gtaaaataaa tcaatagggc aaatggcaaa gccaccaata gactaccaat caggtagaaa
     6421 ataaacttta ggacctttga tttagaaata aaatagccag taaggcagaa cagaatacca
     6481 ataaaaaata agtaaaaaag cacatctgtc ataaatgtat tatatcatag ttagacactt
     6541 aagtcttgat ggatgggaag agaattaaaa ttattcgtgc tgatgtaata ctctataggt
     6601 ataaattctt gacaaaaatt ggtctatacc atataataaa gaaaaacaat aaatggtata
     6661 gaccaaagag gggtgttatg aaaattcatg tagtaaacaa tcaagttgaa ggagcaactg
     6721 tagcattaga cattttgaga gaaaaattga acggagatgc caaggtatta ggtttggcaa
     6781 caggctccag tccgttagaa ttttacagat tgattcgtga gtcagattta gacttttcga
     6841 atgtgacatc tgtaaacttg gatgagtatg ttggtctagg tgaggagagc gaccaatcct
     6901 atattcattt tatgaaggaa aatcttttca atgacaaacc gtttaagaaa tcttatttac
     6961 cgaatggttt ggcgacagat gtagttgctg aaacagaacg ttacaataaa attttggctg
     7021 aacatccggt tgatttccaa attttgggta tcggtcgcaa cggccatatc ggtttcaacg
     7081 aaccaggtgc tccatttgat ggtcagactc atctggttga attggcgcca tcaaccattg
     7141 aagccaacgc ccgcttcttt gacaatccag aagatgtacc aaaacaagct atctccatgg
     7201 gcatcgccaa cattatggca gccaagacca ttgttctcat ggcctatggt caggaaaaag
     7261 ctgacgccat taaggcgact gtggaagggg cagtgacaga agatgtccca gcaagcgtcc
     7321 tccaaaacca tgacaatgtc atcctcatcc tcgaccaagc agcagcgagt aaattagtgt
     7381 agtatgttgt aaacgattat tcttagacat aaagttggtt gtaacagtac aataagtata
     7441 atttctgaat gaatctaggt tctttttcca ttatgaattt gacaaaaatt gtgaaaaaag
     7501 atacaataaa acttgaggaa tgactcgaat gaaaataaga atatctgaat ggattgtttg
     7561 ttgtttgaat agtaatgagt ccctattata aaaaattaag ttttttcatt gttatgatag
     7621 aaaaacttaa aaatagttgc aaaaggatgt gatttttata gtgtgagttt gtatattttg
     7681 tgtaagagaa aacgttttag aaaggaagat agagaattat gaaattgaag aaattgtggg
     7741 tctatctatt gacaccactc ttggtattat ttggttcggg tgtatttgct aatagtgtga
     7801 aagccaaaga attgaataat gttattacgg acgttaagtt ttgggccgta gctgcaaaca
     7861 ttgaaaagaa accggaatct aatgatgttt atgactttta tgttggtaat gattatcggt
     7921 ttgtagtcga ctttgattta agtgcttatg atagtaaact ttcaaatggc gatacatttt
     7981 cgtttacaat tccagctcca tttcctgtta ctgctacaac atttaattta attgatgata
     8041 gtacaaagat tgctataggt gatgcgaatg ttgtttcgaa tagtacaggt ggcggaggaa
     8101 aagctacaat cactataaaa aatcttgatg agtatttaaa aaagaaaaat gctgatgtag
     8161 taaaaggagt taaaggtaca ttctatatta acttcaagtt tacggaagca atggaacagc
     8221 aaatcattag cttttcctct acagagacta aaggagaatt atcaaagaaa attcgaattt
     8281 tgaagggtga aaaagttgat ttttcgaaag aatttggaaa aactaattat actaaaatag
     8341 gtggaacatt aatccaaagt gcttggtcat cacaagcgtt aggtaagaaa ggtgactggc
     8401 tccatgattg ggcagttcgg ttaaatcaaa aacaagccgc ttatgataca cttgtggtgc
     8461 atgatactgt caatatggtt gactactctc caatgcagtt tattcccgaa aaatttaaag
     8521 tcatagctgg ttggtatgat agtgaatata gactgttaga tcaagcagag ttgacaaaag
     8581 atcagtacac ccttacgttt aatgaatctt ataccgattt tgttctcact attccaaatg
     8641 ctaagagtat tcaaaaaaat ggcaaaccag ctgcgtttcg aattgaatac aaaacaacag
     8701 ctccagcaga tgggacaatg gttgctaaca aggttgaagt gagtggcaat ggtaccttgt
     8761 tgacaattga tgatgataga acagatatat cacaagagat agttgctaac tcacgcataa
     8821 cctcgggagg aacaatccaa cttactacag gataccgtat cacactctac aaagtggata
     8881 gtaagacaca aaaccgcctt tctggggcga aattcaaaat tacccctcct gtaggtgcga
     8941 ctactgcaaa agaagaagtt gtgacaacaa atgcagacgg cgtggcgcaa tctcctattt
     9001 acactgaagc agatgtgaaa ttaggtgagt ttactattac tgaagtggag gctcctgagg
     9061 gttatgaact agatccaact ccaattaaag taactgttgg taaagctggc gtcatcaaga
     9121 ctattaaaaa taaacgctat acaaccacag cacaaattac tgcaagaaaa agattattag
     9181 gtcgtgaatt gaacgcggga gaatttgaat ttgtcttgac tgaccaacag ggtagggaaa
     9241 ttgagactgt taagaacgat ttatacggtg acatcaagtt caaggaattg acatttgata
     9301 aagaaggaaa ttataatttt actatcaagg agaagaacgc taatacatca gatgaaaacg
     9361 ggattactta cgatgaacag cctgttgaag tggctgtcgt agtatcaaag gattcaactg
     9421 gaaaattgac ttcaactgtt tcttatgcga atgatgataa cgaatttaat aacttttata
     9481 ccccatctcc agtagatgta gagcttgaag tgactaagaa gttgacaggt cgtaagctca
     9541 ttgaaggtga gtttgaattt gttttgacag aaaatcgttt cccagatcct actccttcga
     9601 gaatgcctgc aagaaatact gttattccta cagaaaatat tgtacgtcaa aaagtgacta
     9661 atactgcaga tgggaaagtg aaatttgccc ccatcaccta tgatcatcga ggagcttatc
     9721 aatacacaat tgaagaaacc aatgcaggta aaacaattga tggtgtgaca tatgatagcc
     9781 ttaaagttga agtgacagtg gttgtaaccg atgatggtaa agggagactc gttgctgagg
     9841 ttttctattc gaaaaatact gagttcaata acatctacaa aacaagcaaa gccaa
//
LOCUS       DASGBY010000069         9766 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.069, whole genome shotgun sequence.
ACCESSION   DASGBY010000069 DASGBY010000000
VERSION     DASGBY010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9766
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.069"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(121..459)
                     /locus_tag="U1396_001291"
     CDS             complement(121..459)
                     /locus_tag="U1396_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HEM5342480.1"
                     /translation="MSTNIYDIANELERAIRNLPEYKAVEAVKVSVEGNSEAKEILES
                     YISFQKEIQSKLQAGEIPTEADQKKMLDFNKKVQGNPLLTEYFSKQQQLGTYVADLER
                     IIFKPLNELL"
     gene            complement(469..1572)
                     /locus_tag="U1396_001292"
     CDS             complement(469..1572)
                     /locus_tag="U1396_001292"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEM5342481.1"
                     /translation="MKKTILIVGLGLIGSSLALCIRKDHPDYHLIGFDPNEQSCQIAL
                     GKGMVDEVSTELEGVAKQADVILLCVPIQVSLRLIEEFSALELKDTVLITDAGSTKSA
                     IVAAAEEHLAPRQINFIGGHPMAGSHKSGASAADLHLFENAYYIMTPCQATKQDAVPR
                     LTDLLSGTGARFVQIDAAEHDRVTSQISHFPHVLASSLMHQAGEYAQDHPFTNNFAAG
                     GFRDMTRIAESEPSMWTNILLTNADSILNRIEEFQARLSEISDVLRSGDQKAIWDFFD
                     KGRQTRKAMEIHKRAGVDSFYDLFLSVPDEEDTILKVLEVLRGISIVNIRINEENRED
                     IHGILQITFKNKGNLEDAAKRLREQTTYKIHLD"
     gene            complement(1580..2746)
                     /gene="aroC"
                     /locus_tag="U1396_001293"
     CDS             complement(1580..2746)
                     /gene="aroC"
                     /locus_tag="U1396_001293"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002997861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEM5342482.1"
                     /translation="MRYLTAGESHGPRLTAIIEGVPAGLPLTAEDINEELKRRQGGYG
                     RGSRMQIETDRVEITAGVRHGKTTGAPITLNVTNKDHQKWLDIMAVEDIEEKLKSKRR
                     IKHPRPGHADLVGGMKYRFDDLRNSLERSSARETTMRVAVGAVAKRILAELDIEIANH
                     VVVFGGKEIDVPDGLSVAEIKERAAQSEVSIVNQEREEEIKAYIDQIKRDGDTIGGVI
                     ETVVGGVPAGLGSYVQWDKKLDAKLAQAVVSINAFKGVEFGVGFQAGYLKGSQVMDEI
                     LWSQEKGYTRRTNNLGGFEGGMTNGEALIIRGVMKPIPTLYKPLMSVDIDTHEPYKAT
                     VERSDPTALPAAGVVMESVVATTLATEILEKFSSDNMEELKAAVASHRDYVKNF"
     gene            complement(2750..3424)
                     /locus_tag="U1396_001294"
     CDS             complement(2750..3424)
                     /locus_tag="U1396_001294"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEM5342483.1"
                     /translation="MKIVVPIMPRNLEEVETIDVERLAEADIVEWRADYLPKDDILRV
                     APAIFEKCSGKEVVFTIRTTREGGHLDLDDQEYVNVIKEVATLYQPDYIDFEYYSYKS
                     VFEQMLEFPNLVLSYHNFEETPSNYMEIMSELTSLSPAVVKMAVMAKTEQDVLDVMNY
                     TRGFKSLNTEQIFATIAMGELGKLTRIAGVITGSCWTFASLDETSAPGQMSLSNTRKF
                     LEILEN"
     gene            complement(3421..4584)
                     /locus_tag="U1396_001295"
     CDS             complement(3421..4584)
                     /locus_tag="U1396_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEM5342484.1"
                     /translation="MKIKVNRIAEQKINRGIQLLDSADFSGVSFDEDRLAVLYSESGS
                     YLGQAYLSKQNKGIGWLFSRSNQDLTMDFFVKLFVDAKQKRQHFYQSEMTNAFRLFNQ
                     DGDSFGGMTVDLYDEYAVFSWYNTFIYSVKEMIVAAFQQVFPEVRGAYEKIRFKGLAF
                     ESAHLYGEEAPEYFTVLENGVHYQVFMNDGLMTGIFLDQHEVRGSLVDGLAAGKSLLN
                     MFSYTAAFSIAAAMGGAEETTSVDLAKRSRELSKAHFKVNSLDLDNHHFVVMDVFEYF
                     KYAKRKGLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQSLEILNTGGTIIASTNAA
                     NVSVEKFKRQIEKGFDVRKHRYEATYRLPADFVINKNDESSNYLKVFTIQVDK"
     gene            4700..6874
                     /locus_tag="U1396_001296"
     CDS             4700..6874
                     /locus_tag="U1396_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5342485.1"
                     /translation="MKKLIDYVKKSGQTRLGFVLILLIIYWLKTLWAYYVDFNLDTQG
                     FFQNFIAIMNPLPVGILLLGLSLYIKNTKVFYSVAMIIYIILSVWLFSNAVYYREFSD
                     YISISTIMATSSVSAGLGEAALKLFRLWDIVYFLDFIIFGILVYRKLLRWDKKTFHKK
                     SSFAITALSVMLFSINLFLAEIDRPELLTRGFSNTYIVRALGLPAFLGYNANQTYNAH
                     KNRSGASATDLEPVKQYITEHYAQPNDNYFGIAKGRNVIYLHLESLQQFVIDYKLNVN
                     GVEYEVTPFLNSLYHSSSTLAFSNFFNQVKAGKTSDAETMIETSLFGLNQGSFMVQYG
                     GSNTQQAAPYILSQNGGYTSAVFHGNAASFWNRNNTYKQWGYNYFFDQSYFSKATAEN
                     SFQYGLNDKIMFADSIQYLEHLQQPFYTKFITVSNHYPYTTSLIGDEIGFPLANTDDE
                     TINGYFATANYLDASIKAFFDYLKATGLYENSVIVLYGDHYGISNSRNPDLAPLIGKD
                     SQTWSDFDNAMMQRVPYMIVVPGMTNGGIFDTYGGEIDALPTLEHLLGIKSDNYLQVG
                     QDLLSSQHSQIVALRTAGSFITPKYTSYEGKIYYTETGLEITNPDETTQKEIDAIKEA
                     TAAQLATSDAIQTGDLIRFFDNGLPALDPSQYNYIDSLAAEIALENKLGKQSTSLYST
                     NGNKSTIELFKAPSYLELHGSTTATSTPNTGTSSTSTSSNSR"
     gene            complement(7171..9675)
                     /locus_tag="U1396_001297"
     CDS             complement(7171..9675)
                     /locus_tag="U1396_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5342486.1"
                     /translation="MKQGKTLLYVAGASLICAVALVTYQASNYREQSNHQKTTSIETS
                     QSKQSKEIPSDSKKEVPGIDKATDDGFLLTDESQIEEKTDLGIIVNHGDHKHFFFYSD
                     LKNTKWAYLIPENYQEKNHSSQPKRSQLSSGSKQIEDEYVFEPKDIVAEDANGYTVRH
                     GDHYHYILKSSLGGTTHRQLTSDSRQSPTLPIVHQQEGIPGIDFQTSDGFLFDGQNIS
                     GVTETGILVRHGKHLHLIHFETLKRSKWSYLVNQYKPNVESDKKAQPEVENTEYQTKL
                     DYLAKELNLEPSRFKKVIVDGQIGLEYPHGDHTHIVLLKEIDTTKPFESPEDRILKQK
                     DGETLEQRKERLIKQYMERFKVKREDITIDGNYMSVRHGDHAHVYKIDPSLPDDPERD
                     VKTETVNLAIEKQLVYGPFYTEGSTENLTRNGVHQKYRPEGLQDIKNFILVTFSTNSD
                     FGNFVVNGKKTKRVYYLVRKDLNWEDLNIAYPQTLQQKGRVFNGWNATLPKSGKMARE
                     HQSFYADFDNVYRKPTKNIYTPSDDVSNIDLSDYVPVKYSAIANGRLKLNGEIRAGFI
                     YFVKSDLTWKQAKEQGLVVPEPVPSKDYEFIEFRTVITGGEKDTDYVSATTSLAAFGT
                     TAPRIGPYIANNTENPTDINDPSRHPNYYWHDPKNYVALAFRAGEGGQLQTHLGTSKT
                     VVYLVRKGLTLNQAGIFPPSLKSDTGYKRDYTKPVIPNVAWDTPILEDTVYDIHFDKV
                     ESDSKDGTVEPGDTWLPGNSLPNTPDVPNGEENADSWLDDLLAPSPEATDVETVTEAE
                     TTTEDTKATESSTAAPIDIPKKSSTEEEPSEDFIFP"
BASE COUNT         2860 a         2196 c         1640 g         3070 t
ORIGIN      
        1 gttcttactc cccaagtacc gtttctgaat ctgtacttgg agataagaac tctacgtaag
       61 cagcgtatac taggcgtcaa tccatgacct aacaccctgc tcctatcaaa tataaatata
      121 ttacaacaat tcgttgagag gcttaaagat gatacgttcc aaatcagcta cataagttcc
      181 caactgttgt tgcttgctga aatattccgt caaaagtgga tttccctgaa ctttcttgtt
      241 gaaatccaac attttctttt ggtcagcttc agtaggaatt tcaccagcct gcaatttaga
      301 ttggatttct ttttggaaag aaatataact ttccaatatt tctttggctt ctgaattccc
      361 ctcaactgag accttaacgg cttccaccgc cttatattca ggaaggttac ggattgcacg
      421 ttccaattca tttgctatat catagatatt tgttgacata tttttctcct aatctaaatg
      481 gattttgtaa gtcgtctgct ctcttaaacg tttcgcagcg tcttccaaat ttcccttgtt
      541 tttaaacgtg atttgtaaaa taccgtgtat atcttcacgg ttctcttcat tgatacgaat
      601 attgacaatg gaaatacccc gtaagacttc caaaaccttc aaaatcgtat cttcctcatc
      661 aggaacacta aggaataaat cgtagaaaga atcaacacct gcacgcttgt gaatttccat
      721 ggctttacga gtttgacgtc ccttatcaaa aaagtcccaa attgcttttt gatcgcctga
      781 tctgagaaca tctgaaattt ctgagagacg tgcttgaaat tcctcgattc gatttagaat
      841 agaatctgca ttggttagca aaatgttagt ccacatgctc ggctcacttt ccgcaatccg
      901 tgtcatatct ctaaatcctc cagctgcaaa attattcgta aagggatgat cttgagcata
      961 ctcaccagct tgatgcatca aactagaagc caatacgtgt ggaaaatgtg aaatttgact
     1021 ggtcacacgg tcatgttctg ctgcatcaat ctgaacaaaa cgtgcccccg ttccagataa
     1081 caagtctgtc aatcggggaa ccgcatcctg cttggtagcc tgacacggtg tcataatgta
     1141 gtaagcattc tcaaatagat ggagatctgc tgcactggca ccagatttat gactacctgc
     1201 catagggtgt ccaccgataa aattaatttg tcttggcgcc aaatgttcct cagcagcagc
     1261 cacaattgca gacttcgttg aacctgcatc tgtaatcaag accgtatcct tcaattcaag
     1321 ggcactaaat tcttcaatca aacgcaaaga aacttgaatt ggaacacaaa gaagaatcac
     1381 atcagcctgc tttgctacac cctccaattc cgttgatacc tcatcaacca tccccttgcc
     1441 caaggcaatt tggcatgatt gttcgttagg atcaaagcca atgaggtgat agtcaggatg
     1501 gtctttgcga atacagagcg caagtgagct tccaatcaac cctagaccta caattaaaat
     1561 cgtttttttc attaattacc tagaaatttt tgacatagtc gcgatgactg gctactgcag
     1621 ctttcaattc ctccatatta tcggaagaga acttctctag gatttctgtc gctagagttg
     1681 tagctacgac tgattccatg actacaccag ctgctgggag agccgttgga tctgaacgct
     1741 ccacagtagc tttataaggc tcatgagtgt caatgtcaac cgacatcaat ggcttataga
     1801 gggtcggaat tggtttcata acaccacgaa taatcagagc ctcgccattg gtcataccac
     1861 cttcgaaacc acctagatta ttggttcggc gtgtatatcc tttttcttgg gaccagagaa
     1921 tttcgtccat aacttgactc cctttgagat agccagcttg gaagcctact ccaaattcta
     1981 ctcccttaaa agcattgatt gaaacaacag cctgcgctaa ttttgcatct aactttttat
     2041 cccattgcac atatgacccc aagccagctg gaactcctcc aacaacagtc tcaatcactc
     2101 cgccaatagt atctccatct cgcttgattt gatcaatata ggctttgatt tcttcttcac
     2161 gctcttggtt gacaatggat acttctgact gggctgcacg ctctttgatt tctgctacgc
     2221 ttaaaccatc tgggacatca atttccttcc ctccgaaaac gactacatgg ttagcaattt
     2281 caatatccaa ctcagccaaa atccgtttgg caaccgcacc aacagccaca cgcatagttg
     2341 tctcacgcgc gctagaacgc tccaaggaat tacgcaaatc atcaaagcga tatttcatac
     2401 caccaactag gtcagcatgt cctggtcgtg gatgtttgat acgacgctta cttttgagtt
     2461 tctcttcgat gtcctcaact gccataatat ccaaccattt ttgatggtct ttgttggtca
     2521 cattcaatgt aatcggggca ccggttgtct taccgtgacg aacaccagct gtaatctcta
     2581 cgcgatctgt ttcaatctgc atacgactac cacgaccgta tccaccttgg cgccgtttta
     2641 actcttcatt aatatcctcg gctgttaaag gaagacccgc tggaactccc tcaataatgg
     2701 ctgttagacg tggtccatga gactcaccag ctgttaaata acgcataact taattctcca
     2761 aaatttccag aaacttacga gtattgctta aagacatttg tcctggtgca gatgtttcat
     2821 ctaagctggc aaaagtccag caggagcctg taatcacacc tgcaatacgt gttaacttcc
     2881 ctagttcacc catggcgatt gtcgcaaata tctgctcagt gttcagtgat ttaaaaccac
     2941 gagtataatt cataacatct aggacatcct gctctgtctt agccattaca gccattttaa
     3001 caacagctgg tgataggcta gtcagttcag acatgatttc catataatta gacggtgttt
     3061 cttcaaaatt atgataactc aacacaagat taggaaactc caacatctgc tcaaaaaccg
     3121 acttataaga gtagtattca aaatcaatat aatctggctg ataaagcgtt gctacttctt
     3181 tgattacatt gacatattct tgatcgtcca aatccaagtg accgccttca cgtgttgtcc
     3241 gaatggtgaa aactacttcc ttaccactac atttttcaaa tatagcaggt gctactctta
     3301 aaatatcatc tttcggaaga tagtctgctc gccattcaac aatatctgcc tctgctagac
     3361 gttctacatc aatggtctct acctcttcca gatttctagg cataatagga actactattt
     3421 tcatttatct acctgtatcg taaagacctt taggtaatta ctactttcat catttttatt
     3481 gattacaaaa tcggctggca agcgataagt tgcctcatag cgatgttttc taacatcaaa
     3541 ccctttttca atctgccgct taaatttttc aacagaaaca tttgcggcgt tggtcgaagc
     3601 gataatagtt ccacctgtat ttagtatttc caaagattga gaaatcaact tgtgataatc
     3661 tttggctact gaaaaggttt gtttcttatt tcgtgcaaag cttggcggat ccaagacaat
     3721 cacatcataa gttaagcctt tacgtttggc atatttgaaa tattcaaata catccattac
     3781 tacaaagtgg tgattatcta agtctaaact attaacctta aagtgagctt tagaaagttc
     3841 tcgcgagcgt ttggctaagt caacagaagt cgtttcctct gctccgccca tggcagcagc
     3901 aatagaaaat gctgccgtat acgagaacat gttcaaaagt gacttgcctg ccgccaggcc
     3961 atccaccaag gaaccacgta cctcatgctg atccaaaaag attcccgtca tcagtccatc
     4021 attcataaag acctgatagt gaactccatt ttccaacaca gtgaaatact caggggcttc
     4081 ttctccataa agatgagcag actcaaaggc caaaccttta aaacgaatct tctcataagc
     4141 tcctcttact tctggaaata cctgttgaaa tgcagcaaca atcatctctt tgacagaata
     4201 aataaaggta ttataccatg aaaaaactgc gtattcatca tacaagtcaa ccgtcattcc
     4261 accaaaacta tctccatctt gattaaataa acgaaaagcg ttcgtcatct cagattgata
     4321 aaaatgttga cgtttctgtt tagcatccac gaataattta acaaaaaaat ccatggtcaa
     4381 gtcttgattg cttctactaa acagccagcc tatcccctta ttctgtttgg acaaataagc
     4441 ctgacccaaa tagcttccag actctgaata caaaacagcc agcctgtctt catcaaatga
     4501 aacacctgaa aaatcagcgc tatccaagag ttgaatccct ctgtttattt tctgttctgc
     4561 aatacggttt acctttattt tcatagaatt attataacat gtttcttcat atatgccaaa
     4621 aaaactctaa actttgaggc ttattttaaa attatggtat aatgaactaa acttttagaa
     4681 aggaccatga ggttttattg tgaaaaaact aattgactat gtcaagaaga gcggacagac
     4741 tagacttggt ttcgtcttga ttttgctaat catttactgg ctcaaaacac tctgggccta
     4801 ctatgttgat ttcaacttag atacacaagg gtttttccaa aattttattg ctattatgaa
     4861 tcctctacca gtcgggattt tattactcgg tctctcgctt tatataaaga atacaaaagt
     4921 cttctatagc gtagcgatga tcatttatat tattctttcc gtctggctct tttcaaatgc
     4981 agtctattac agagaatttt ccgattatat ttccatctct actataatgg ctacctctag
     5041 tgtatctgct ggattaggag aagcagctct taagttattt aggctatggg atattgtcta
     5101 ttttcttgat tttatcattt ttggaatcct agtctatcgt aaactactcc ggtgggataa
     5161 aaagacattt cataaaaaat ctagctttgc tattacagca ctatcagtca tgcttttctc
     5221 catcaacctc tttttagcag aaattgatag accagagcta cttacgagag gattttctaa
     5281 tacttatatc gtcagagccc ttggtttacc tgctttcctt ggttacaatg ctaatcaaac
     5341 ctacaatgcc cacaagaatc gttctggagc atcagctaca gatttggagc ctgtgaaaca
     5401 atatattaca gaacattatg ctcagccgaa tgacaactac ttcggtattg ccaaaggacg
     5461 aaatgttatc tatctccacc tagaaagctt acaacaattt gttattgact ataagttgaa
     5521 cgtcaacggt gtcgaatacg aagtcacacc tttcctcaat tctctgtatc attctagctc
     5581 tactctcgcc ttttctaatt tcttcaacca agtgaaggca ggtaaaacct ctgatgccga
     5641 aaccatgatt gaaacctcac tttttggact caatcaaggc tctttcatgg tccaatatgg
     5701 cggaagcaat acccagcaag ctgcaccata tattctctct caaaatggtg gctatacatc
     5761 tgctgtattc cacggaaatg cagccagttt ctggaatagg aacaacacct ataaacaatg
     5821 gggttacaat tacttctttg atcaatccta tttctctaaa gccactgctg aaaattcatt
     5881 ccaatacggt ctgaatgata aaatcatgtt cgccgactct atccaatatc tggaacattt
     5941 acagcaaccc ttctatacca aatttatcac agtttccaac cactacccct acacaaccag
     6001 cttgattggg gacgagattg gctttccatt agccaataca gatgatgaaa ccattaatgg
     6061 ctattttgct actgcaaact atctcgatgc gtccataaag gcatttttcg attacttaaa
     6121 agcgactggc ttgtacgaaa actccgttat cgtcctctat ggtgatcact atggaatttc
     6181 taattcacgc aatcctgact tggcaccgtt gattggaaaa gattctcaga cttggtcaga
     6241 ttttgacaat gccatgatgc aacgtgttcc atatatgatt gttgtacctg gaatgaccaa
     6301 cggcgggatt tttgatacct acggtggtga gattgatgca cttcctactc tcgaacatct
     6361 tttaggaatc aaatccgata actatcttca agttggtcaa gacctacttt ccagccaaca
     6421 cagccaaatt gtggctcttc gaaccgctgg cagtttcatc acaccaaaat acactagcta
     6481 cgaaggtaaa atctactata cagaaactgg tcttgaaatt acaaatccag atgagacaac
     6541 tcagaaagaa attgatgcaa ttaaagaagc tactgcagca caactggcga ctagcgatgc
     6601 cattcaaact ggtgatctta tccggttctt cgacaatgga ttgccagcct tggatccaag
     6661 ccaatataac tacattgact cattggctgc cgagattgca ctagagaata aacttggcaa
     6721 acaatcaaca agtttgtata gcacaaacgg caataagtcg acaattgaac tatttaaagc
     6781 accaagctac ctagaacttc acggtagtac aactgctact agcacaccaa ataccggcac
     6841 tagctcaaca agtaccagtt caaattcacg gtaatacact aaaaggctta gaatcatgtc
     6901 agttactaca ttgattctaa gcctttttat actcaatgaa aatcaaaaac agactagctc
     6961 caaaggtttg gggaaccttt ggaggttgga gatagagcga acgtagttca tttctactta
     7021 gcagatagaa ccctgttact attttgtttc aaggtaacag gctgaaaggc tccactggag
     7081 cctttcactc atcaaatcaa gtcaacaacg tctgattttg attttcgaag agtattagac
     7141 cactatttca aatcactcat atctatttca tcaaggaaat ataaaatcct cactaggctc
     7201 ttcctctgtt gatgattttt tagggatatc tatgggagca gcagtactac tttcagttgc
     7261 ttttgtatct tctgttgtag tttcagcttc tgttacagtt tctacatctg tcgcttctgg
     7321 actaggtgcc aacaaatcat ctaaccagct atctgcgttc tcttctccat taggaacatc
     7381 tggagtattc ggcaatgaat tcccaggcaa ccaagtatca cctggctcaa ctgtcccatc
     7441 tttgctatca ctttcaactt tatcgaaatg aatatcgtag acagtatctt ccaaaatagg
     7501 tgtatcccat gctacatttg gaataacagg ttttgtataa tctcgtttat aacctgtatc
     7561 actcttcaaa gatggcggaa aaattccagc ttggttcagt gttaatcctt ttctaacaag
     7621 gtaaacaact gttttactag ttcccaaatg tgtctgaagt tgaccacctt cacctgctcg
     7681 aaatgcgagg gctacataat tctttggatc atgccaatag taatttggat gtctacttgg
     7741 gtcattgatg tccgttggat tctccgtatt gttagcgatg taaggtccta tacgaggagc
     7801 cgttgtccca aatgctgcca agctcgttgt ggcactaaca taatctgtat ctttttctcc
     7861 accagtaata actgtcctaa actcaatgaa ctcataatct ttgcttggaa ccggttctgg
     7921 tacaacaagt ccttgctcct tagcttgttt ccaagttaag tcagatttca caaagtatat
     7981 gaaccctgct cgaatctcac catttaattt taaacgacca ttggctatcg cactatattt
     8041 aacaggtaca tagtctgata aatcaatatt tgaaacatca tcacttggag tgtaaatatt
     8101 tttggttggc ttacgataaa cattatcaaa atcagcataa aaactttgat gttctcttgc
     8161 catcttgcca gactttggca aagtagcatt ccaaccgtta aagacgcgtc ccttttgttg
     8221 aagggtctgc ggataggcga tgttcaaatc ctcccaattt aaatctttac gaaccaaata
     8281 ataaactctc ttcgtttttt taccattaac gacaaaatta ccaaaatcac tatttgtact
     8341 gaatgttact agaatgaaat ttttaatatc ctgaagacct tctggacgat acttttgatg
     8401 gacaccatta cgtgttaaat tttctgttga accttctgta taaaaaggtc catatactaa
     8461 ttgtttctca atagcaagat ttaccgtttc agtcttaaca tcacgctcag gatcatctgg
     8521 caaactagga tcaattttat aaacgtgcgc atggtctcca tggcgtacac tcatatagtt
     8581 cccatcaatt gtaatgtcct cacgttttac tttaaaacgc tccatgtact gtttaatgag
     8641 acgttctttt ctctgttcaa gagtttctcc atccttttgt ttaagaatac gatcttccgg
     8701 actttcaaat ggcttcgttg tatcaatttc ctttaataaa acaatatgtg tgtgatctcc
     8761 atgcggatac tctaatccaa tttgaccgtc aacgatgact ttcttaaaac gtgatggctc
     8821 taaattcagt tcttttgcta agtagtccaa tttggtttga tactcagtat tttctacctc
     8881 aggttgtgcc ttcttatccg attcaacatt tggtttatac tgattcacaa gataagacca
     8941 tttactcctt ttcaatgttt caaaatgaat aagatgcaaa tgtttcccat gccttactag
     9001 aatcccggtt tccgttacac cgctgatatt ttgcccatca aacaagaaac cgtcactcgt
     9061 ttgaaaatca atccccggaa tcccttcctg ttggtgaacg ataggaagag ttggcgattg
     9121 acgactatca gaggtcaatt gtctgtgtgt cgtgccacct aagcttgatt ttaaaatata
     9181 gtgataatga tccccatgcc gaacagtata gccattggca tcctctgcga caatatcttt
     9241 aggttcaaaa acgtattcat cttcgatctg tttcgagcct gacgataatt gacttctctt
     9301 aggttgagaa gaatgatttt tttcttgata gttttcagga attaaataag cccattttgt
     9361 attctttaaa tctgaataaa agaaaaagtg cttatgatcg ccatgattga caataattcc
     9421 taaatcagtt ttttcctcaa tttgtgactc atcagtgagt aaaaaaccat catccgtcgc
     9481 cttatcaatc cctggaactt cctttttcga atctgaagga atctcttttg attgctttga
     9541 ttgcgatgtt tctatgcttg ttgttttttg atggttcgat tgctctctat agttagacgc
     9601 ttgataagta accaatgcta cagcacaaat aagcgatgct cctgctacat aaagcaaagt
     9661 cttaccttgt ttcatatcta tgtttctctc cttatttacc attattatat taccgacacg
     9721 ataaatgtaa tcaactattg taaaatagca tcaccacatc cactta
//
LOCUS       DASGBY010000070         9737 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.070, whole genome shotgun sequence.
ACCESSION   DASGBY010000070 DASGBY010000000
VERSION     DASGBY010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9737
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.070"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(21..1811)
                     /gene="pepF"
                     /locus_tag="U1396_001298"
     CDS             complement(21..1811)
                     /gene="pepF"
                     /locus_tag="U1396_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM5342487.1"
                     /translation="MTNAMPKRQEIDVQLTWDTDILFPTPDNYKENLAAYAKQVTAFE
                     SNYKGKLTDKDTIVSALTEYEKIVILDSRLSHYAFLPLEVDKMNTELASLANEYDLVS
                     AKARPQRDFLYSELGQLDEAFLLELKDEQPQWAAFFDAILRDKPHQLHPLQEELLSNF
                     APTFGQPYNNYGVTKFEDMTFENFEANGQTLDNSYVLFENDYELSHDTEIRRNSAAGF
                     YSTLKKYKNTTAATYLSHIKNEQIEARLRGFDNTIDFLLHSQNVSRDLFDRQIDVIMK
                     ELAPHMRRYVKLVAKAHGLDKITHADLKISLPSEYNQRITPEESKQFLIDCLGILGED
                     YVKMIEQSFDERWIDFAQNEGKATGGFCATLYDGPSYILLSWTGLMNEVLVLAHELGH
                     AGHFQLAKKQSVLSYDPSLYFIEAPSTANEVLTCNTLLKNNQDPGFQAYLISELISRT
                     YFHNMVTHLLEAAFQREVYTRLDNEEYLNGDILCQIKLDVIKEFWGEDFEIGDDAGLI
                     WMRQPHYYIGLYPYTYSAGLTIGTAMAKQLEEHPEEVVEKWLETLSLGASLSAQDLAK
                     HAGVDVSTDQPLKETIAYVGSLVDKLETLI"
     gene            1978..2316
                     /locus_tag="U1396_001299"
     CDS             1978..2316
                     /locus_tag="U1396_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002264292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342488.1"
                     /translation="MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETWRKNLAQVT
                     KKVVLDLEEAHTERPTISMVQSQVEHRLLDAGYISIAEHYISYRLQRDLERNGYGDKI
                     IVHLRFEQVR"
     gene            2501..3868
                     /locus_tag="U1396_001300"
     CDS             2501..3868
                     /locus_tag="U1396_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019768617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM5342489.1"
                     /translation="MAKIVVVGANHAGTAAIKTMLTNYGQENEIVVFDQNSNISFLGC
                     GMALWIGEQIGGPEGLFYSNKEELESLGATVYMESPVTNIDYDAKTVTALVNGQEHVE
                     SFEKLLFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIEKLKNKDI
                     NRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLSDIMAKNLEEHGIK
                     LAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTALAGEGIERFRNGAFLV
                     NKRQETSIPGVYAIGDCATIYDNATGDTSYIALASNAVRTGIVAAHNICGTDLEGIGV
                     QGSNGISIYGLNLVSTGLTLEKATRLGLNAAVTEVTDNQKPEFMEHGNFPVTIKIVYD
                     KDSRRILGAQMAAREDISLGIHLFSLAIQEGVTIEKLALTDLFFLPHFNKPYNYITVA
                     ALGAE"
     gene            4158..6437
                     /gene="pcrA"
                     /locus_tag="U1396_001301"
     CDS             4158..6437
                     /gene="pcrA"
                     /locus_tag="U1396_001301"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HEM5342490.1"
                     /translation="MNPLLNGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYL
                     IDEKMVNPWNILAITFTNKAAREMKERAYALNPATQDCLIATFHSMCVRILRRDADHI
                     GYNRNFTIVDPGEQRSLMKRILKNLNLDPKKWSERSILGTISNAKNDLIDDKAFEAQA
                     GDLYTQIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPEVLTYYQQKFQYIHVD
                     EYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPESKVVL
                     LEENYRSTKNVLQAANEVIENNRNRRPKKLWTQNAQGDLITYYRARDENDEAIFVAGQ
                     IDQLHREGKAYKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISY
                     LNIIANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPIKGK
                     AAQAVFDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQE
                     FLSVTKNFDEKDTEEEETGLDRLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLE
                     FPVVFLIGMEENVFPLSRAAEEEDELEEERRLAYVGITRAEQTLYLTNANSRLLFGRT
                     NYNQPSRFIREISSDLLDYQGLARPANTSFKASYVNGRATQFGQGMSLQQAMQSRKAS
                     VQPSAKLGGSMPFASSNQSSSSGTNWSVGDIAVHKKWGRGTVLEVSGSGSNQELKINF
                     PEMGLKKVLASLAPISKEE"
     gene            6879..7634
                     /locus_tag="U1396_001302"
     CDS             6879..7634
                     /locus_tag="U1396_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor 2"
                     /protein_id="HEM5342491.1"
                     /translation="MSKRKIISSLFLSATVLGGLLFIQTPTVKAIELEDAQTMSTSSA
                     QAPIFSPGELIQETNHTAQFRNSVSIAATNGTSEKEVIWKVDSTYWNFNYDKGGYYFV
                     VPAGMKLKRITLVNGQTREELLDRFPKNVNDNNGSNSSYRLFKRGENTYDDRDFDSQW
                     GWSAGRASNDKVNQWKDENVFSDIYYIDSPRHAGPVTYELEAEVTDQNKTSFPLVAVM
                     KNFYARTSYLSEPTSLAGLDVKVEWPQNNNLNS"
     gene            8050..8735
                     /locus_tag="U1396_001303"
                     /pseudo
     CDS             8050..8735
                     /locus_tag="U1396_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775054.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
     gene            8814..9578
                     /locus_tag="U1396_001304"
     CDS             8814..9578
                     /locus_tag="U1396_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5342492.1"
                     /translation="MKRLLRRIRPTKPLKELTWIDLIIITTILCGNAIYTSTMQWIAS
                     FSATETVETGVLSFSPADNWWALANQGKLFLFALVYLLIRNYDFKQLKVKLEWTVLLW
                     GPLIFIGAGLISDLTFTAFSYIPGLSGGYNYLGYLPYYDWNIMTVLNRFLAVDYSTVI
                     YSLFNGLYEEFFFLGLLLSTDKKKRSLVLLFSTIVRISFHTYQGMVSALVIGVAFGLF
                     YYYMYTRKNDNLLPYFLGHALADMVGTSFFTLFIAG"
BASE COUNT         2958 a         1877 c         2079 g         2823 t
ORIGIN      
        1 gttcaagtct tttatgtgtc ttagattagt gtttccagtt tatccaccaa tgaaccaaca
       61 taggcaatgg tttctttgag tggttggtca gttgaaacgt caacacctgc gtgcttagca
      121 aggtcttggg cagaaagact tgcaccgagt gacaaggttt ccaaccattt ttcaacaact
      181 tcttcaggat gttcttccaa ttgcttagcc atagccgtac cgatggtcaa accagctgag
      241 taggtatatg gatacaaacc aatgtagtag tgtggttgac gcatccagat aagacctgca
      301 tcgtcaccga tttcaaagtc ttcaccccag aattccttga tgacatccaa cttgatttgg
      361 cagagaatat caccgttgag gtattcttca ttgtccaaac gagtgtagac ttcacgttgg
      421 aaggctgctt caagcaagtg agtgaccatg ttgtggaagt aagtacggct gatcaactcg
      481 ctaatcaagt aagcctggaa gccagggtct tggttgtttt tcaaaagggt gttacatgtc
      541 aagacttcat ttgcagtaga aggcgcctcg atgaagtaga gggatggatc gtagctaagg
      601 acactttgtt tcttagccaa ttggaaatga ccagcatgtc ccaattcgtg agccaatacc
      661 aagacctcgt tcatcaagcc tgtccatgaa agtaggatgt aagatggtcc atcgtaaaga
      721 gtagcacaga agccaccagt agccttacct tcgttttgag caaagtcaat ccaacgctca
      781 tcaaatgatt gttcaatcat tttcacataa tcttcaccaa gaatgcccag gcagtcaatc
      841 aagaattgtt tggattcttc aggtgtgatg cgttggttgt attcagatgg tagactgatt
      901 ttcaagtcag catgtgtgat cttgtccaat ccatgagcct tagcaaccaa ttttacatag
      961 cgacgcatgt gaggagccaa ttctttcatg atgacatcaa tctgacggtc gaagagatca
     1021 cgagagacat tttgactatg caagaggaag tcaatcgtat tgtcaaatcc acgcaagcga
     1081 gcttcgattt gctcattctt gatatgagac aaataagttg ctgcagttgt attcttgtat
     1141 ttcttcaagg ttgaatagaa accagcagct gaattgcgac ggatttcggt atcgtggctg
     1201 agctcataat cattttcaaa gagcacatag ctattgtcga gcgtttgacc atttgcctcg
     1261 aagttttcaa atgtcatatc ttcaaacttg gtcacaccgt agttgttata gggctgacca
     1321 aatgttggag caaaatttga taaaagttct tcttgtagtg gatgaagctg atgcggcttg
     1381 tcacggagaa tagcatcgaa gaaagcagcc cattgtggtt gttcatcttt taattcaagt
     1441 agaaaggctt catctaattg cccaagttct gaatagagga aatctcgttg aggacgtgcc
     1501 ttggcagaaa cgaggtcgta ttcgttggcc aggctcgcca attcagtatt catcttatcg
     1561 acttccaaag gaaggaaggc atagtgggaa agtctgctat caagaataac gattttttcg
     1621 tattctgtta aggcggaaac gatggtatcc ttatcagtta gctttccttt gtaattcgat
     1681 tcgaaagctg tcacttgctt agcgtaggct gccaaatttt ctttgtagtt atcaggggtc
     1741 ggaaatagaa tgtccgtatc ccaagttaat tgcacatcaa tttcttgacg tttaggcatt
     1801 gcatttgtca tgattttctc cttatttcat tttaataggt ccattatatc atactaaagg
     1861 gctttcagcg aaaataagcc aaggcaaaat ttatgaaaaa gaatacttga caaaatacac
     1921 aaaaacctag ataatgtaag tatgaaaggg tttactgaaa accagaaagg agcttttatg
     1981 caagtcatta aacgtagtgg agagattgtt gaatttgatc cagataaaat ctaccaagcc
     2041 atcattaaag ctgcacagac agtctatgtc attgatgaaa cttggcggaa aaatcttgct
     2101 caggtcacaa agaaagtagt gcttgacttg gaagaagctc atacagagcg accaacgatt
     2161 agcatggttc agtcgcaagt tgaacatcgt cttttagatg cagggtatat ttctattgct
     2221 gagcattaca tttcctatcg cttgcaacgt gatttagaac gtaacggcta tggcgataag
     2281 attattgtac atctgcgttt tgaacaagta cgttaagaga aacctagaga aatctaggtt
     2341 tttgctttta tatatcttta cattgtttaa agaaaatagc atttcaaaaa ctttttgaaa
     2401 aaaatgtgat attctgagca tattttttga aatcggtaac atttatattg tataatatag
     2461 ttcgtaaaaa aatatatttt cgaaagtgag attttacatt atggctaaaa tcgttgttgt
     2521 cggtgctaac catgctggta ctgccgcaat caaaactatg ttgacaaatt atggtcaaga
     2581 aaatgaaatc gttgtatttg accaaaactc aaatatttca ttcttgggtt gtggtatggc
     2641 tttgtggatc ggtgagcaaa ttggcggtcc tgaaggactt ttctactcaa acaaagaaga
     2701 gttggagagc ttgggtgcga cagtatacat ggagtcacct gttacaaaca ttgactatga
     2761 tgccaaaaca gttacagcgc ttgtaaatgg tcaagaacat gttgaatcat ttgaaaaact
     2821 tcttttcgca actggttcac aacctatctt acccccaatc aaaggagctg aaatcaaaga
     2881 aggttcgctt gaatttgaag caactcttga aaacttgcaa tttgttaaat tgtaccaaaa
     2941 ctcagcagat gttattgaaa aattgaaaaa caaagacatc aaccgcgtcg cagttgttgg
     3001 tgctggttac atcggtgttg agcttgcgga agcattccaa cgtaaaggta aagaagtagt
     3061 acttattgat gttgtggata catgtttggc tgggtactat gaccgtgact tgtcagatat
     3121 tatggctaaa aacttggaag agcatggtat caaacttgcc ttcggcgaaa ctgttaaaga
     3181 agttgctggt aatggtaaag ttgagaaaat catcactgac aagaacgaat acgatgttga
     3241 catggttatc ttggctgttg gtttccgtcc aaacactgcg cttgcaggtg aaggaatcga
     3301 gcgcttccgt aacggtgcct tccttgtaaa caaacgccaa gaaacttcaa tcccaggcgt
     3361 ttacgctatc ggtgactgtg caacaatcta cgacaacgct actggcgaca caagctacat
     3421 cgctttggct tcaaacgcag tacgtactgg tatcgtagca gctcacaaca tctgtggcac
     3481 tgaccttgaa ggtatcggtg tacaaggttc taacggtatc tctatctacg gtcttaacct
     3541 tgtatcaaca ggtttgacac ttgaaaaagc tactcgtctt ggtttgaacg ctgctgttac
     3601 tgaagtaaca gacaaccaaa aaccagaatt catggagcac ggtaacttcc cagtaactat
     3661 caagattgtt tacgataaag attcacgtcg tatccttggt gcgcaaatgg ctgctcgtga
     3721 agatatctca ttgggtatcc acctcttctc attggcaatc caagaaggtg taacaatcga
     3781 aaaattggcc ttgacagact tgttcttctt gccacacttc aacaaacctt acaactacat
     3841 cacagtagct gccttgggtg ctgaataatc aattgaatac aaaagctcag agatgactct
     3901 gggctttttt ggctgttctc catcattttg cacctgccta tcgagagaat ttttggtata
     3961 atggagggta tgattataat gaacctgtat ttacagttta gcactttcat ctaagcctag
     4021 tttttcagct atttatcgtt tgtttttcca aaaatacagt cggtatttcc tcaaaaaatt
     4081 accttgatta gctataaacg atttcctatt tgaaagtgaa ttacttgtaa atacatgttc
     4141 taagaaagta tgagaaaatg aacccattat taaacggaat gaatgacaga caggcagaag
     4201 cggtacagac gacggaaggt ccgctattga ttatggcagg tgctggttca ggtaagacgc
     4261 gagtcttaac ccaccgcatc gcctacttaa ttgatgagaa aatggtcaat ccctggaata
     4321 ttttagctat cacctttaca aacaaagcgg cgcgtgagat gaaggagcgg gcctacgccc
     4381 tcaatcctgc tacgcaagac tgtttgattg ctaccttcca ctccatgtgt gtgcggattt
     4441 tgcgtcgtga tgctgaccat attggttata atcgcaattt tacgattgtc gatccaggtg
     4501 agcaacgcag tctcatgaaa cggattttga aaaatcttaa tttagatccg aaaaagtgga
     4561 gtgaacgttc tatcctggga accatttcta atgccaaaaa cgacttgatt gatgacaagg
     4621 cgtttgaagc ccaggcaggc gacctataca cgcagattgt tgctaaatgc tacacggctt
     4681 accaaaagga actaagacag tcagaagccg ttgactttga tgatttgatc atgttgacgc
     4741 tccgcctttt tgaccaaaat ccagaggtcc tgacctatta ccagcagaaa ttccagtata
     4801 tccatgtaga tgagtatcag gataccaacc atgcccagta ccaattggtc aagctcctgg
     4861 catcgcgttt caagaatatc tgtgtggtcg gggatgcgga ccagtcgatc tatggttggc
     4921 gtggtgcgga tatgcaaaat atcctggact ttgaaaagga ctatccagaa agcaaggttg
     4981 tgcttttgga ggaaaactat cgttcgacca agaacgtctt gcaggctgcc aatgaggtca
     5041 tcgaaaacaa ccgcaatcga cgtcccaaaa aactctggac acagaatgcc caaggggatt
     5101 tgattaccta ctatcgtgcc agagatgaga atgacgaggc gatttttgtc gcagggcaga
     5161 ttgaccagtt gcacagagaa ggcaaggctt ataaggattt tgctgtactc tatcggacca
     5221 atgcccaatc ccgtaccatt gaagaagccc tgctcaaatc taatatccct tataccatgg
     5281 ttggaggcac caagttctac agccgtaagg aaatccggga tgtgatttct tatttgaata
     5341 tcatcgcaaa tccatcggat aatatctcct atgaacgcat tgtcaatgag ccaaaacgtg
     5401 gcgttggacc tggcacggtt gacaaactcc gtgattttgc gaccagccac agcatgtcct
     5461 tgctagaagc ttcacaggat attatgttat cgccgattaa agggaaggca gcgcaggcag
     5521 tctttgacct agccaatctc ctctataatc ttcgtaatca attagacaac ttgacggtta
     5581 cccaagtagt cgaggcagta ttgaatcaaa caggctacat tgatgccctt gcagcacaaa
     5641 atacgctgga agccaatgct cgcatagaaa acattcaaga attcctgtct gttaccaaaa
     5701 actttgacga aaaggatact gaggaagaag agacaggtct ggatcgcttg acacgattcc
     5761 tgcttgattt ggcactgatt gctgacacag atgatggcga tacagaatct tcagaagtga
     5821 ctcttatgac cctccacgca gccaaagggc tggaatttcc tgttgtcttc ttgattggta
     5881 tggaggaaaa tgtcttccca cttagtcgtg cagcagaaga agaggacgaa ttggaagaag
     5941 aacgtcgttt ggcttacgta ggaatcaccc gtgctgagca gactctttac ctgaccaatg
     6001 ccaactcccg cctgctcttt ggtcgcacca actacaacca accaagccgc tttatccgag
     6061 aaatatccag tgacttgctt gattatcaag gtcttgctcg tccagccaat actagcttta
     6121 aggcctctta tgtcaatggc agagcgacac agtttggaca aggtatgagc ttacaacaag
     6181 ccatgcaaag tcgaaaagca tccgtacaac catcggctaa gctcggaggc agtatgcctt
     6241 tcgcatcgag caaccaatcg tcaagctcag gcaccaactg gtcagttggt gacatcgcag
     6301 tccacaagaa atggggacgc gggacagtcc ttgaagtatc aggttcaggc agcaaccaag
     6361 aactcaaaat caatttccca gagatgggac ttaagaaggt cctggcaagt ctggcaccga
     6421 ttagtaagga agagtaggga tgaatcaaaa gtaaagagga aacatcgcat tttacaagac
     6481 ttgcgacgtc ttcataatat tatttttaga acgatatatg acacctcaaa atgagtcttg
     6541 acctgactgt tttgaggtga ttttttgtat actgcttaaa gcatcgaaac aatcttgcac
     6601 gctttgatga catctagata agcaaatttt gaattttgaa tcggacgttt ttagagtgtg
     6661 tcttaccatc tatatgctaa accacaaata tagaaaaaaa cggatagctc caagagaaaa
     6721 tactacttgt attgttatac tgatagtagt taaaagtctt ttatttgcta gagactctca
     6781 tcttagtaag gaagggatag cctagaaatg ggacgattag cttgccaata tttttgtagc
     6841 tagcgcaaaa atagatcaaa taaaagaagg agactcttat gagtaaacgt aaaattatat
     6901 caagtttatt tttaagtgct accgtattgg gaggattgct gtttatacag acaccaaccg
     6961 taaaagcaat tgagttagag gatgcacaaa ccatgagtac tagcagcgca caagcaccga
     7021 ttttttctcc tggggaactt attcaagaga ctaatcatac tgctcagttt agaaattctg
     7081 tatctattgc tgcaactaat ggaacatctg aaaaagaagt aatctggaag gttgattcga
     7141 cttattggaa ctttaattat gataaaggtg gatactattt tgttgttcct gcaggtatga
     7201 aattgaagcg aattactctg gttaatggtc aaacgagaga ggaattgctt gatcgttttc
     7261 ctaaaaatgt aaatgataat aatggttcta atagttctta tcgtttattt aagagagggg
     7321 aaaataccta cgatgatcgt gacttcgata gtcagtgggg atggtcagct ggacgagcaa
     7381 gtaatgataa ggtaaatcag tggaaagatg aaaatgtatt ttctgacatc tattatatcg
     7441 atagtcctcg ccatgcaggt ccagtaactt atgaattgga ggcagaagta actgatcaaa
     7501 ataaaacttc cttccctctg gtagcggtaa tgaaaaactt ctatgctaga acatcatact
     7561 tgagtgaacc aacttcgctt gcaggacttg atgtgaaagt tgaatggccc caaaataata
     7621 acttaaattc gtagaactaa accaaccagt ggcaatcgtg tgtagttaag gctactacga
     7681 ttgccttttt ctgcgagtcc tcttctctct acttgaataa accagcgctt gaatattatg
     7741 atgaggaaat gggagcatcc agggctgcag atactcaata aaaatcaaaa gtagcctagg
     7801 aaacgaagcc ggtgatagaa ctctgttgct ttcttatttc aaggcaacag gctaaaaagc
     7861 tccacaggag cttttcactc atcgaggcaa gttgacaacg gatcattttg atttttaaag
     7921 agtatgaaat ctgaaaaaca gtataataga gcctaggaca cggagctatt tttttagaaa
     7981 ctgtggtata ctttagatat actgcctgac atcgtttcag tagtttctgc ttagaaagga
     8041 cctatcatct tgcaatacaa acacttactc tttgatcttg accatactct tcttgatttt
     8101 agccgtggag aagaagtagc cttaacccag tttttgacag ctatggaggt tgaagatatt
     8161 caagctttta aagaagtcta tcgaccgctc aatcagggca tgtggaagga tttggaaaaa
     8221 gggaacatta caaaaagaaa gagctaataa acacccgctt ttcacggacc tttgcccact
     8281 ttggtcggca agttgatgga agggagatgg ccttgcgcta ccaagaattt attgggcggc
     8341 agggacaaat ttttacaggt gcagataagc ttttgcagga attgacacac cgaggctacc
     8401 agatttatgc agcgaccaac ggcgtgacct atatacagaa aaatcgcttg cttcactcac
     8461 cgattcaatc gtattttaaa gaagtattta tttctgagca gatggggacg caaaagcctg
     8521 cgactgattt ttatgaaaaa atagcagagc agattgcagg ttttcaattt gaccaagcct
     8581 taatgattgg agacagtttg acagcagata ttcaaggcgg aaataatgct ggtatggata
     8641 ctgtttggta taatccgact cacatgataa ataatagtaa ggcagttcca acctatacca
     8701 ttcatagcta tcaagaatta ttagatttgt tataagatat tttaagaaac ttataaggat
     8761 tttagtatat aattatacag aaagaatata tacaaaaata taaggaggaa aaagtgaaaa
     8821 gattactgag acgcattcgt ccaacaaagc ccctaaaaga actcacttgg atagatttga
     8881 ttattatcac aacgatttta tgtggtaatg ctatttatac ctcaaccatg caatggatag
     8941 catcattttc cgcaacagaa accgttgaaa caggagttct gtcgtttagt ccagccgata
     9001 attggtgggc tctagccaat caaggaaaat tattcctgtt tgccctggtg tatttattga
     9061 ttcggaatta tgatttcaag cagctaaaag taaaattaga atggaccgtt ctactctggg
     9121 gaccactgat tttcattggt gcgggcctga ttagcgattt gacatttaca gctttttcat
     9181 atattcctgg tctatctggt ggatataatt accttggata cttgccttat tatgactgga
     9241 atatcatgac agtgctcaac cgtttcctag ccgttgacta cagcacagtt atctattcct
     9301 tgtttaatgg cctctatgaa gagttctttt tcttaggctt attgttgagt acagataaga
     9361 aaaagcgttc gctggtctta ctcttttcaa caattgtccg tatatctttc catacctatc
     9421 aaggaatggt atctgctctt gttattggtg tagccttcgg ccttttctat tactacatgt
     9481 acacaaggaa aaatgataat ttattaccat atttcttagg acatgctctt gcggatatgg
     9541 ttggtacaag tttcttcaca ttgtttattg cagggtaaac aatgtgaaga acggacatca
     9601 agctaatcgg ataaaatttc tttctcccta cagctgacaa acggatgatg atatgtagtt
     9661 tctatcaact cggtatcatc acccgtttta ttgtgctgat atatttaatc tcttcagtca
     9721 aatttcgatt gctttat
//
LOCUS       DASGBY010000071         9726 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.071, whole genome shotgun sequence.
ACCESSION   DASGBY010000071 DASGBY010000000
VERSION     DASGBY010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9726
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.071"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..399
                     /locus_tag="U1396_001305"
     CDS             <1..399
                     /locus_tag="U1396_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342493.1"
                     /translation="LSCLVEAVVRHTKFDTLSSLGLIFLLFSMGMLFWVTRLLGDIWT
                     VKLMLVKDHRFVDHWLFRVVKHPNYFLNIIPELIGLALLCHATYSFLILFPVYMVILY
                     RRIHEENNLLKTVIIPNGTVQSAAEITGNN"
     gene            complement(608..1516)
                     /locus_tag="U1396_001306"
     CDS             complement(608..1516)
                     /locus_tag="U1396_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HEM5342494.1"
                     /translation="MKIDDLRKSSNIEDRRGQSSSNSSFLSGSSGGNVLLGLLFSRLG
                     WKGKLLVLVLLVAFGGMSNLGGLLSTSTRTNPYQSSQVTTTGTDMSDADAEFMSKVLG
                     STEDFWVQEFKANGLTYNAPTMVFYTNQTQTGCGVGSAQAGPFYCSADRKIYIDTSFY
                     QELSSKYKAAGDFAMAYVIAHEVGHHVQNELEVLGAYHQKRAQLSDKEGNALNVRLEL
                     QADYYAGAWAKYVDGQGILDAGDIDEAMNAAHAVGDDTLQQEAYGRTVPDSFTHGTSE
                     QRKKWFNLGYTYGDLAHANTFSVEKP"
     gene            1682..3025
                     /locus_tag="U1396_001307"
     CDS             1682..3025
                     /locus_tag="U1396_001307"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEM5342495.1"
                     /translation="MVEYLSVSHLTKYLKLKFDRDPYLEKVYLTGQVSNFRKRPSHQY
                     FSLKDDKAVIQATMWAGVYKNLGFELEEGMKINVIGRIQLYEPNGSYSIVIEKAEPDG
                     IGVLAIKFEQLKQALTQEGLFKEEFKQALPRFTKKIGVITSPSGAVIQDIITTVSRRF
                     PGVEIVLYPTKVQGDGAAQEVVANIQRANERDDLDVLIVGRGGGSIEDLWAFNEEIVV
                     RAIFESRIPIISSVGHETDTTLADFVADKRAATPTAAAELATPVTKADLLGYLNQQEN
                     RAYQAMTNRLKFLRGQLEKISQSVMFRQPERLYDGYLQKLDRLTNQLQTRMKELYSQQ
                     KQASLLLQQRLQGVHPGRKVESFQERIIQQERLLKSNMANIYDNKMAKADKLIEALTM
                     LDTSRIVARGYAMIRQDGRVIDSVENVQIGENLTIQMKDGQLDVEVKHVQTDENI"
     gene            3000..3215
                     /locus_tag="U1396_001308"
     CDS             3000..3215
                     /locus_tag="U1396_001308"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002963102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEM5342496.1"
                     /translation="MSKQTKTFEENLAELEGIVTKLERGDVALEEALAEFQKGMVLSK
                     DLQKTLAAAEKTLVKVMQADGSEAEMD"
     gene            3215..4087
                     /locus_tag="U1396_001309"
     CDS             3215..4087
                     /locus_tag="U1396_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM5342497.1"
                     /translation="MVDVKRIDQEIRDFYYNRGTIVSEELIDAILYSIDGGGKRIRPV
                     LLLQIVEGFGVELQQAHYQVAAALEMIHTGSLIHDDLPAMDDDDYRRGRLTNHKKFDE
                     ATAILAGDSLFLDAFGLLSLADLPNQVLLELVQLMSLASGTFGMVGGQMLDMLGEGKK
                     LEIFDLINIHSNKTGRLLTFPFHAVGIITQQPSSVVGSLWQAGMLIGHAFQVRDDILD
                     VTADFDELGKTPRKDLAAEKATYPSLLGLEESKFIVQDSLNKAVAIFKELEEHNGFKG
                     QEVYQLIESLRING"
     gene            4080..4901
                     /locus_tag="U1396_001310"
     CDS             4080..4901
                     /locus_tag="U1396_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEM5342498.1"
                     /translation="MAKERVDVLAFKQGLFETREQAKRGVMAGLVVSVINGERYDKPG
                     EKIDEGIELKLKGEKLKYVSRGGLKLEKALQVFDLAVEGQTTIDIGASTGGFTDVMLQ
                     AGAKQVYAVDVGTNQLAWKLRQDDRVISMEQYNFRYAELEDFELGQPSFASIDVSFIS
                     LSLILPALHRILVDGGQVVALVKPQFEAGREQIGKNGIVKDKSVHLKVLEDVTKMAVE
                     TGFSVKALSFSPVQGGHGNIEFLAHLEKSTQPNQIDKEVITTTVYQAHEEFKKDE"
     gene            4894..5319
                     /locus_tag="U1396_001311"
     CDS             4894..5319
                     /locus_tag="U1396_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5342499.1"
                     /translation="MNKRERLEVIKDLVVRFPIDTQEEIVERLEAMGVNATQATVSRD
                     IKELGIIKVPSADKGYIYGLPKAGLVKVKSQNVFEVSVMDKMINLRLVPGSSAVVKRQ
                     ILEQFQEHVFSVIADDDSILLIVTNEGIISQIEQTVRGW"
     gene            5322..6983
                     /gene="recN"
                     /locus_tag="U1396_001312"
     CDS             5322..6983
                     /gene="recN"
                     /locus_tag="U1396_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEM5342500.1"
                     /translation="MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNL
                     MLGARATTDVIRHGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGR
                     SVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
                     YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDK
                     LLNHKQIADTLTNAYALLDNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYY
                     VVEDITKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTVDDVLDYFSKISEEY
                     NLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKA
                     RFQVRFTKGKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKE
                     GKTSIVFDEVDTGVSGRVAQAIAQKIYKIGQYGQVLAISHLPQVIAIADYQFFIEKIS
                     DEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG"
     gene            7077..7910
                     /locus_tag="U1396_001313"
     CDS             7077..7910
                     /locus_tag="U1396_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5342501.1"
                     /translation="MSKIKIVTDSSTTIEPSLVEELNITVVPLSVMVDGVVYSDNDLK
                     EGEFLELMRGSKNLPKTSQPPVGLFAETFADLAKDGSQIIAILLSHALSGTVEAARQG
                     ATLSGADVTILDSSFTDQAEKFQVVEAARMAQAGASKEEILAAIETVKEKTELYIGVS
                     TLENLVKGGRIGRVQGMLSSLLNIRVIMEMKDHQLTPIVKGRGNKTFKKWLEEFTATL
                     ADKKVAEIGISYSGTADFANEMKSQLQEYVSKEISVLETGSIIQTHTGEDAWAILIRY
                     E"
     gene            7903..8736
                     /locus_tag="U1396_001314"
     CDS             7903..8736
                     /locus_tag="U1396_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM5342502.1"
                     /translation="MNNRKLIQGFVFFFLAILGSIFLFHQLIPVASSRISRQELTVSE
                     KISFRYVALGDSLTEGVGDTTGQGGFVPLLAQSLTNDYGYEVDYKNFGVSGNTSNQIL
                     KRMKEDGELISYLKTADLLTLTVGGNDLRKAIIKNIANLKVSTFDKPAKDYGKRLDTI
                     IKTARKNNPNLPIYVVGIYNPLYLNFPELTEMQTIVDNWNTMTEQITEKYQHVYFVPI
                     NDLLYKGLEGEAGISQNGSQVTNNLLYEEDSFHPNNTGYEIMKKAILERMNETTESWE
                     P"
     gene            8708..9304
                     /locus_tag="U1396_001315"
     CDS             8708..9304
                     /locus_tag="U1396_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HEM5342503.1"
                     /translation="MRPRKAGNLNIWKWLFLAQLALLIGCGIVLYTRIQTDREDLTKL
                     VQTSTEDTKVGTFSTNREQLNQTLTNYLKEYQTEEFSYQLFVTSQQVVFEGSYQIFGV
                     TIPLYIYFQPSKMEDGSILLRITEISVGSLSLPKAEVLAYLQKNYKLPAFVKIDSEQA
                     QVQVQLTELKNKFGLYGKANTIDLYNDQFIVDIYRKRQ"
     gene            9394..9669
                     /locus_tag="U1396_001316"
     CDS             9394..9669
                     /locus_tag="U1396_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEM5342504.1"
                     /translation="MANKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQ
                     LIGFGNFEVRERSARTGRNPQTGAEIKIAASKVPAFKAGKALKDAVK"
BASE COUNT         3037 a         1762 c         2212 g         2715 t
ORIGIN      
        1 ttatcatgtt tggttgaagc agtagtgcga cacaccaagt ttgatacgct tagtagctta
       61 ggtttgatat tcttgctgtt ttcaatggga atgttatttt gggtaacacg attgttaggt
      121 gatatttgga cagttaagct catgttggta aaagatcatc gttttgttga tcattggttg
      181 tttcgtgttg taaagcatcc taactatttc ctaaatatta taccagaatt aatcggttta
      241 gctttattgt gtcatgcaac atatagtttt ctcatcttat tcccagtcta catggttatc
      301 ttatacagac gtattcacga ggaaaataat ttgttgaaaa cagtgattat tccaaacgga
      361 actgtgcagt ctgcagcaga gataactgga aataattaaa gtttgctaaa taataattgt
      421 gatattgttt gaaactagga taccgctcta attagagttg atgagtaagt ttacatgatt
      481 cagttttcat atttaaaagt ggtaccgtat gtgtaaattg gcttttgtca gttgtatatt
      541 ataaagaaac tcttgcaaaa gtgtatgttg caagagtttc tttattgcta cgagaggcta
      601 tggatgttta cggtttctct acggagaatg tattggcgtg agcaaggtca ccataggtat
      661 aaccgagatt aaaccatttt ttcctttgct cagaagtgcc gtgggtaaaa ctgtctggaa
      721 cagtacggcc gtaggcttcc tgttgaagag tatcgtcacc aactgcatgg gcagcattca
      781 tggcttcgtc aatatcacca gcatccaaga tgccttgtcc atcaacatat ttggcccagg
      841 ctcctgcata atagtcagct tgcaattcta aacgaacatt tagcgcattg ccttccttat
      901 cggatagttg agcccgtttt tgatggtagg ccccaagaac ttctaattca ttttggacat
      961 ggtgaccaac ttcatgagcg atgacataag ccatggcaaa gtcaccagca gccttatact
     1021 tgctagacaa ttcttgatag aaagaagtat caatataaat cttgcggtca gcagagcaat
     1081 agaatggacc ggcttgggcg gaacccactc cacatccagt ttgggtctgg ttagtataga
     1141 aaaccatagt cggtgcattg taggttaaac cattggcttt aaattcttgg acccaaaaat
     1201 cttctgtcga tcctaaaacc ttactcatga attcagcatc tgcatcagac atatctgtac
     1261 cagttgttgt gacttgactc gattggtaag gattagtcct tgttgaggtg gaaagcagcc
     1321 caccaaggtt tgacatgcct ccgaaggcta ctaaaaggac aagaacaagt agttttcctt
     1381 tccaaccaag tcgtgaaaag agtagtccca atagaacatt tcctccagat gaaccagaca
     1441 agaaagatga gttagaactg gattgtcccc tgcggtcctc aatgttagaa ctttttcgta
     1501 aatcatcaat tttcatataa atctccttag aacctgtcaa caagttctta ttttctcaca
     1561 agctattata tagtaaaacg cagaaaaaac acaggaaagc tatcggaaat aataggcata
     1621 gttctgtata aaagtgcaaa atttggtata atagtaggga tacaatatag aaggagtgga
     1681 catggttgaa tatttatcgg ttagtcatct aactaagtat ttaaaattaa agtttgaccg
     1741 cgatccgtat ttggagaagg tgtatttgac aggtcaagtg tccaacttcc gtaaacgccc
     1801 tagccatcaa tatttttcgc tcaaggatga caaggcagtc atccaagcga ccatgtgggc
     1861 aggcgtctat aagaatctgg gctttgagct tgaagaggga atgaaaatca atgtcattgg
     1921 gcgcattcag ctctatgaac caaatggttc ctattccatt gtcattgaaa aagctgagcc
     1981 agatggtatt ggagtcttgg caatcaagtt tgaacagctc aaacaagctc tgacacagga
     2041 aggtttattt aaagaagaat tcaagcaagc cttgccacgg tttaccaaga aaatcggtgt
     2101 cattaccagt ccgagtggag ctgttattca ggatattatt acaaccgtta gccgacgttt
     2161 tccaggcgta gagattgttc tctatccgac caaggtgcaa ggagatgggg ctgctcaaga
     2221 agttgtcgcc aatattcaaa gagccaatga acgggatgac ttggatgttc tgattgttgg
     2281 ccgtggtggt ggttctatcg aagacctttg ggcatttaat gaagaaattg tggttcgggc
     2341 tatttttgaa tcccgtattc caatcatttc cagcgtaggt catgaaactg atacgactct
     2401 ggctgatttt gtagcagata aacgagctgc caccccaaca gctgccgcag aattagcaac
     2461 acctgtgacc aaggcagact tactgggcta cctcaatcag caggaaaata gagcctatca
     2521 ggccatgacc aatcgtttga aattcctaag aggccagctt gagaaaatta gccagtcagt
     2581 catgttccgc cagcctgaac gcttgtatga tggttattta caaaaattag accgcttgac
     2641 caatcaattg cagacacgga tgaaagaact ctacagccag cagaaacagg ctagtctcct
     2701 actacagcaa cgattacaag gtgtgcatcc aggtcgtaaa gtagagagtt tccaagagag
     2761 aattatccag caagaacgac tcttgaagag caatatggct aatatctatg acaataagat
     2821 ggccaaggcg gacaagctga ttgaggcctt gactatgctg gataccagtc gcatcgtggc
     2881 ccgtggctac gccatgattc gtcaagatgg tcgggtgatc gatagtgtag aaaatgtaca
     2941 aattggtgaa aacctaacca tccagatgaa ggatggtcaa cttgatgtgg aggtaaaaca
     3001 tgtccaaaca gacgaaaaca tttgaagaaa atctagctga attagaagga atcgtaacca
     3061 aattagagcg aggcgatgtg gctctggaag aagcacttgc tgagtttcaa aaagggatgg
     3121 ttctatcgaa agatctacaa aagacactag ctgcagctga aaagaccttg gtcaaggtca
     3181 tgcaggcgga tggcagtgaa gcggagatgg attaatggtt gatgtgaaac ggattgatca
     3241 ggaaattcgc gatttttatt acaaccgtgg aacaattgtt tcggaagaat taattgatgc
     3301 gattttgtat tcgattgatg gtggtggaaa gcggattcga ccggtcttat tgcttcaaat
     3361 cgtggaagga tttggggtag aattacagca agcccactac caagtggccg ctgccttaga
     3421 gatgattcat acgggaagcc tgattcacga tgatcttcct gccatggatg atgatgatta
     3481 ccgtagaggt cgactcacca atcataagaa atttgacgaa gcgacagcta ttttagcagg
     3541 cgatagcctc tttttggacg cttttggcct cctgtctctg gctgatttgc caaaccaggt
     3601 tttacttgaa ttggtacagc ttatgtcatt agcatctgga acctttggga tggtcggtgg
     3661 tcaaatgctg gacatgctag gtgaaggaaa aaaattggaa atttttgacc tgataaatat
     3721 ccatagcaac aagacaggtc gattattgac attcccattt catgcagtag ggattattac
     3781 gcaacagcct agttccgttg tcggttcctt gtggcaagct gggatgttga ttggtcatgc
     3841 cttccaggtt cgagatgata ttttagatgt aacggcagat tttgatgaat tgggcaaaac
     3901 gcctcggaaa gatttggcgg ctgaaaaagc aacatatcca agcttgttag ggttagaaga
     3961 gtccaaattc attgttcagg attcattgaa taaggccgtg gccattttta aggaattaga
     4021 agaacacaat ggctttaagg ggcaagaagt gtatcaattg atagaaagtt tacgaatcaa
     4081 tggctaagga aagagtagat gtactagctt ttaaacaggg gcttttcgag acgcgggagc
     4141 aggccaaacg tggtgttatg gctggcttag ttgtatccgt catcaacggg gaacgctacg
     4201 ataaacctgg tgagaagatt gatgaaggaa ttgagctcaa actcaaaggt gaaaaactca
     4261 agtatgtcag ccgtggcggt ctgaaattgg agaaggcctt gcaggttttc gacctagcag
     4321 ttgaggggca aacgacgatt gatattggag cctcaacagg tggctttaca gatgtcatgt
     4381 tgcaggctgg tgccaagcag gtctatgctg tggatgtcgg taccaatcaa ctcgcttgga
     4441 aattgcgcca agatgatcgc gtgatcagca tggaacagta caatttccgc tatgctgagt
     4501 tggaagattt cgaacttggt caaccaagtt ttgcgtccat tgacgtcagc tttatctcat
     4561 tgagtctgat tttgccagca ctccatcgta tattagtgga tggtggtcag gttgtagcct
     4621 tggtcaaacc tcaatttgag gctggacgtg aacagattgg gaaaaatggc attgtcaagg
     4681 ataaatccgt tcacttgaaa gtcttggaag atgtgacaaa aatggccgtg gaaacaggct
     4741 tctcagtcaa agcccttagc ttttcccctg ttcaaggcgg tcatggcaat atcgaatttt
     4801 tagcgcactt agaaaaatca acacaaccaa accagattga taaagaggtc ataacaacta
     4861 cagtctatca agcacatgag gaatttaaaa aggatgaata aacgagaacg attagaagtc
     4921 attaaagatt tggtagtccg atttcctatt gatacacagg aagaaattgt tgaacgtcta
     4981 gaagcaatgg gtgtcaatgc gacacaagca acggtttcac gtgatatcaa ggaacttggc
     5041 attattaagg ttccatcagc agataaggga tatatttatg gtttaccaaa ggcaggtctt
     5101 gttaaggtaa aatcgcagaa tgtttttgaa gtctcagtga tggataaaat gattaatctc
     5161 cgtctggtac ctggaagctc tgctgtggtc aaacgccaga ttttggaaca atttcaagaa
     5221 catgtttttt cagtgattgc tgatgatgac agtattctgc tcattgttac aaacgaaggt
     5281 attatttcgc aaatcgaaca gacggttaga gggtggtagc catgttacta gaagtgtcca
     5341 ttaaaaactt cgccattatt gagcaggtat cactgaattt tgaaaacggg atgaccatcc
     5401 tatctggtga aacaggtgca ggtaaatcca ttatcattga tgccatgaac ctgatgctag
     5461 gggcgcgtgc gacgacagat gttatcagac atggggccgc caaggctgag attgaagggc
     5521 tcttttcctt tgaaaatagc agagctctcg agcaaatttt gcttgaacag gggattgaag
     5581 tagctgacga actcattatc cgccgtgaaa tcctgcaaaa tggccgttcg gtcagccgtg
     5641 tcaatggaca aatggtcaat ttatctgtct tgaaacagat tgggcaatat ttagtagata
     5701 ttcatggtca acatgaccag gaagaattga tgaaatccca gcaccatatc cgtcttttgg
     5761 acagtttcgg agaagatgaa ttttggagtc ttaaagaccg ttatcagaca acctttgatg
     5821 cctatcgtag tcttcgcaaa cgagttcttg aaaagcaaaa aaatgagcaa gaacacaagg
     5881 cgcggattga gatgctagaa taccaaattg ctgaaatcga agcagcggat ttgaagtctg
     5941 gggaagatat tcaactcaat caggaacgcg ataaactgct caaccacaaa caaattgcag
     6001 atacactgac caatgcctat gcactgttag acaatgaaga tttttcaagc ttgaacaacc
     6061 tacgctcagc tatgagtgac ttgcaaagtc tggaagaatt tgatccagac tacaaacagc
     6121 tctcttctag cctgacagaa gcttattatg tcgttgaaga tataaccaag cgtctcagcg
     6181 atgtggtcga taatctagat tttgacggca atcgtctcat gcaattggaa agtcgtctgg
     6241 atttgctcaa taccattacg aagaaatatg gtggaactgt cgatgatgtt ttggactatt
     6301 ttagtaaaat cagcgaagaa tacaatctat tgacaggcaa tgatttatct ggagatgatt
     6361 tggaagttca gcttaaaaac ttagagaaag aattggttga acgagcaggt cagctcagcc
     6421 aatcacgcca tgaattggca gttgttttag aagatattat tcgccaagaa ttgcaagact
     6481 tgtatatgga gaaagctcgt ttccaagttc gatttactaa aggaaaattt aatcgagaag
     6541 gaaatgaaac agtagaattt tacatttcta ccaacccagg tgaagacttc aaaccactgg
     6601 ttaaggtagc ttctggagga gaattgtctc gcttgatgtt ggccattaag tcagcctttg
     6661 cccgtaaaga aggtaaaact tctattgtct ttgatgaggt ggatacaggg gtgtctggac
     6721 gtgtggccca ggcaattgcc cagaaaattt ataaaatcgg acaatatggt caagtattgg
     6781 cgatttctca tctaccacaa gttattgcta ttgcagatta tcagttcttt attgagaaaa
     6841 tatccgacga acattcgact gtttctcgtg tccgtctctt gaccaaagaa gagcgtattg
     6901 aggaaattgc caagatgtta gccggtgaca aaatcacaga tgcagcccgt aatcaagcaa
     6961 aagaattagt agaaaaaggt taggcgacta gcctttttgc ttatgtccaa agtttatttt
     7021 ttagttaaaa tttgttataa tagatggcaa aattgaagag aattgtagga tgaaatatgt
     7081 caaagattaa gattgttacg gattcaagta cgactattga acccagtttg gtcgaagaat
     7141 tgaatataac agttgttcca ttatctgtaa tggttgacgg agtcgtatac tctgacaacg
     7201 atttaaaaga aggagaattc ttagagctca tgcgtgggtc gaaaaacttg ccaaaaacaa
     7261 gtcagccccc agtaggactc tttgcggaaa cttttgctga tttggctaaa gatggcagtc
     7321 agattattgc tattctcttg tcgcatgcct tgtcagggac agtagaagct gctagacaag
     7381 gagcaaccct atcaggtgct gatgtgacaa tactcgattc aagctttaca gatcaggctg
     7441 aaaaattcca agttgtagaa gcagcacgca tggcacaagc tggtgccagc aaagaagaaa
     7501 tccttgcagc tattgaaaca gtcaaagaaa aaacggaatt atacatcggt gtatcaaccc
     7561 tagaaaatct ggtcaagggt ggtcgtattg gacgtgttca agggatgctg agtagcctac
     7621 tcaatatccg tgtcatcatg gaaatgaaag accatcagct gactccgatt gtcaaaggac
     7681 gaggtaataa gacctttaaa aaatggctgg aagagttcac ggcaactcta gcagataaaa
     7741 aagtagccga gattggtatt tcctattcag gaacggctga ttttgcaaat gaaatgaaga
     7801 gtcaattaca agagtacgtc tcaaaagaaa tttctgtttt agagacaggt tccatcattc
     7861 aaactcatac tggtgaggat gcctgggcta ttttgattcg ttatgaataa caggaagttg
     7921 attcaaggct ttgttttctt ttttctggca attctagggt cgatttttct atttcatcaa
     7981 ctcattcctg ttgcctcatc tcgcatctcc agacaagagc ttaccgtatc agaaaaaatc
     8041 agttttcgat atgtggcact tggtgattct ttgacagaag gtgttggaga tacaactgga
     8101 caggggggct ttgttccctt gttggctcaa tctctaacta acgattatgg ttatgaagta
     8161 gattataaaa atttcggagt ttctgggaat accagtaatc agattcttaa gcgaatgaag
     8221 gaagatggag agctgataag ttacttaaaa acagcagatc tgttaactct gacagttggt
     8281 ggcaatgatt tgcgcaaggc tattattaaa aacattgcca atctcaaagt ttcaactttt
     8341 gataagcccg caaaagatta cggaaaacga ttggatacaa ttattaagac agcgcgtaag
     8401 aataatccaa atcttcccat ctatgttgtc gggatttaca atccactcta cctcaatttt
     8461 cctgaattga cagaaatgca gacaattgtt gataattgga atacgatgac agaacagata
     8521 actgaaaaat atcaacatgt ctactttgtt ccaatcaatg atttgctcta taaaggattg
     8581 gaaggggagg ctggtattag tcaaaatggt agccaagtta ccaataattt actgtatgag
     8641 gaagacagtt tccatcccaa taatactgga tatgagatta tgaaaaaagc gatattggag
     8701 agaatgaatg agaccacgga aagctgggaa ccttaatatt tggaaatggc tatttttagc
     8761 ccagttggct ttattgattg gttgcggaat agtcctctat acacggattc aaacagatag
     8821 agaggattta acaaagctcg ttcagactag tacagaagac acaaaggttg ggaccttctc
     8881 tactaatagg gaacagctca accaaaccct cactaactat ctaaaagagt atcagacgga
     8941 agagttttcc taccaattat tcgtaacgag tcagcaagtt gtttttgaag gcagctatca
     9001 gatttttggt gtgactatcc cactctatat ttattttcaa cctagcaaaa tggaagatgg
     9061 cagtattttg ttacggataa cagaaatatc agttggaagt ttatccttgc cgaaagcaga
     9121 ggtattagct tatttacaaa aaaattataa actacctgcc tttgtaaaaa tagactcaga
     9181 acaagcgcaa gtacaggttc aactgacaga actgaagaac aaatttggtc tgtatggaaa
     9241 ggcgaatacg attgatttgt acaacgacca attcattgtt gatatctaca gaaaaagaca
     9301 gtaaaatagc attaaaaact tgaccaaacg cctaaaattc ggtactatat agaagtgagt
     9361 aataactcag aaaattattg gaggacttag caaatggcta ataaacaaga tttgattgca
     9421 aaagttgcag aagcaacttc attgactaaa aaagactcag cagcagctgt tgatgcagta
     9481 ttcggagcag tagcagacta ccttgcagct ggtgaaaaag tacaattgat cggtttcggt
     9541 aactttgaag ttcgtgagcg ttcagcacgt acaggtcgca accctcaaac aggtgcagaa
     9601 atcaaaatcg cagcatcaaa agttccagca ttcaaagctg gtaaagctct taaagacgct
     9661 gttaaataat tcagcattaa aaagcccgtc atatcaagct ttctagcttg tccgacgggc
     9721 tttttt
//
LOCUS       DASGBY010000072         9466 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.072, whole genome shotgun sequence.
ACCESSION   DASGBY010000072 DASGBY010000000
VERSION     DASGBY010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9466
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.072"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            5..1963
                     /gene="ligA"
                     /locus_tag="U1396_001317"
     CDS             5..1963
                     /gene="ligA"
                     /locus_tag="U1396_001317"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011837172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEM5342505.1"
                     /translation="MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELET
                     AHPELILPDSPTHRVGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQA
                     TYICELKIDGLSISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAVDIT
                     VRGECYMPKASFDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQE
                     ASPSEATSQSQVLEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVV
                     IKVNDLAIQEELGFTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPV
                     QLAGTTVSRATLHNVDYIAEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIP
                     SHCPSCQSDLQHYEDEVALRCINPICPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG
                     AGLVHDVADIYKLTVDDLLTLEGFKEKSADKLYQAIQTSKSNSAECLLFGLGIRHVGS
                     KASKILVEKFGDLETLAFADQEAIALLEGLGQVIAKSLTTFFASEGAQQLLAELKEAK
                     VNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV
                     AGTDAGSKLTKAQELGIEIKDEAWLESL"
     gene            1974..3017
                     /locus_tag="U1396_001318"
     CDS             1974..3017
                     /locus_tag="U1396_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM5342506.1"
                     /translation="MEERKRARLIYNPTSGQEIMKKNVAEVLEILEGYGYETSAFQTT
                     AEKDSAKNEATRAALADFDLIIAAGGDGTINEVVNGIAPLEKRPQMAIIPTGTTNDYA
                     RALKVPRGNPVEAAKVIGKQQTILMDIGLAKNQKNGFHQEHYFINIAAAGTLTELTYS
                     VPSQLKTMFGYLAYVVKGAELLPQVQFTPVRVEHDEGVFEGSVSMIFVALTNSIGGFE
                     QIVPDAKLDDGNFTLLMVKTGNLFEILHLIRQVLDGGKHIESDLVEYIKTKSLSIENL
                     NPDNRLLLNLDGEFGGEAPVRLHNLSNHIEFFADTDLVSDHAITLDTDQMNREDMAKR
                     FIEETDHIDEAIK"
     gene            3154..3354
                     /locus_tag="U1396_001319"
     CDS             3154..3354
                     /locus_tag="U1396_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEM5342507.1"
                     /translation="MSLGALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGV
                     FLGVAFIEGTFFVTLAMTFVLK"
     gene            3391..4107
                     /gene="atpB"
                     /locus_tag="U1396_001320"
     CDS             3391..4107
                     /gene="atpB"
                     /locus_tag="U1396_001320"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEM5342508.1"
                     /translation="MEEHLSPTLTLGPVTFDLTMVLVSVITISIIFLLVFWASRRMEL
                     KPKGKQNVLEYVYELTINFTKGNLGDAEAKRYSLFFFTVFTFLLVANNLGLMTKLETA
                     EGHNLWTSPTANMAYDFGLATIATVFCHVEGIRRRGFKAYLKSFVTPWAMAPMNILEE
                     VTNLVSLALRLYGNIYAGEVLVSLLLQLSQQSALAYPIAFALNVVWTAFSVFISCLQG
                     YVFIMLVSMYLNKKISSESE"
     gene            4125..4631
                     /gene="atpF"
                     /locus_tag="U1396_001321"
     CDS             4125..4631
                     /gene="atpF"
                     /locus_tag="U1396_001321"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEM5342509.1"
                     /translation="MATTITMQSSTILGNFILVTASFAVLIILIRVFAWDKITGIFEE
                     RANKIANDIDAAEEKLTAAANLVQQREDELVQGRIESQKIIQDAVERAKLEKKRILEQ
                     ADVEIQGLKQKAQLEIEAEKREAQENLRVQVAELAVDLASKIILEDLDQQAHSNLIDR
                     YLDKLGDK"
     gene            4632..5165
                     /locus_tag="U1396_001322"
     CDS             4632..5165
                     /locus_tag="U1396_001322"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM5342510.1"
                     /translation="MNARENAIVQKYALSFVEKVSDHADIWDMYDQISDLISIIHDSK
                     LNRILLSATVSREEKADFVRTVRQSSFWQINDLIEDVIRDGHADLLLETLERVQLQIS
                     KFKNEFEARVVSVYPLTEAQKERLRHLVEQRFSLRVRNITEELDQSLLGGFIVTVNHK
                     VIDASVRTQLKDVRKKL"
     gene            5169..6689
                     /locus_tag="U1396_001323"
     CDS             5169..6689
                     /locus_tag="U1396_001323"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011889023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM5342511.1"
                     /translation="MESGVLLINAQEISALLKQQIEGFQPDFDYTETGVVTYIGDGIA
                     RAQGLDNAMSGELLVFENGTIGMAQNLETNDVGIIILGQFTDIREGSVVRRTGKIMEV
                     PVGSALIGRVINPLGQPVDGLGEIRTSKTRPIEYPAPGVMQRKSVNEPLQTGLKAIDA
                     LVPIGRGQRELIIGDRQTGKTSVAIDAILNQKGQDMICIYVAIGQKESTVRTQVETLR
                     QYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYEGKHVLIVYDDLSKQAVAYR
                     ELSLLLRRPPGREAYPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAY
                     IATNVISITDGQIFLKDDLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLA
                     SYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTNGFL
                     DSVPIDDILAFEEELYSYFDLHYDGLLDVIRTTKDLPDTDELNAAIQAFKDQSVFK"
     gene            6701..7579
                     /locus_tag="U1396_001324"
     CDS             6701..7579
                     /locus_tag="U1396_001324"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM5342512.1"
                     /translation="MAGSLNEIKSKIASTKKTSQITGAMQMVSASKLAKSEQLAQSFQ
                     IYASKVRQITTDLLRGELMASDTSNPMLIRRPVQKSGYIVITSDSGLKGSYNSSILKA
                     VMGMIEQDHDSKDEYEIIAIGSMGADFFRARGINPVFELRGLADNPSFEEVQKIISKS
                     VEMYKNELFDELYVCYNHHVNSLTSQVRVQQMLPVEDLDHNEADGYTATFELEPNREV
                     ILEQLLTQYAESTIYGAILDAKTAENAAGMTAMQTATDNAKNVINDLTIQYNRARQAA
                     ITQEITEIVAGASALE"
     gene            7599..9005
                     /gene="atpD"
                     /locus_tag="U1396_001325"
     CDS             7599..9005
                     /gene="atpD"
                     /locus_tag="U1396_001325"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM5342513.1"
                     /translation="MSSGKITQVVGPVVDVAFAAEDKLPEINNALVVYKNDDSKQKVV
                     LEVALELGDGVVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDL
                     EESFPADFEREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
                     KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEP
                     PGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP
                     TLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQ
                     LGIYPAVDPLASSSRALAPQIVGEEHYAVAMEVKRVLQRYQELQDIIAILGMDELSDE
                     EKTLVGRARRIQFFLSQNFNVAEQFTGMPGSYVPVAETVKGFKEILDGKHDHLPEDAF
                     RNVGSIEDVVAKAAKMKF"
     gene            9015..9431
                     /locus_tag="U1396_001326"
     CDS             9015..9431
                     /locus_tag="U1396_001326"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM5342514.1"
                     /translation="MGQMTVQIVTPDGIKYDHHAVFVLVKTVDGEMGVYSGHEELIAV
                     LEIGEMKVRRVDDENHVDWIAVNGGIIEVNKDIITVISDSAERERDIDISRAERAKLR
                     AERELEEAQTARNIDMEMRATVALQRAINRIRVGKH"
BASE COUNT         2755 a         1762 c         2220 g         2729 t
ORIGIN      
        1 tcttatgaaa acaagaatat cagaattagt tagcgtgctt aatcaatacg ctaaagagta
       61 ttatcaattg gaccaaccta gcgtatcaga tgcagaatat gatacgcttt atcgtgaatt
      121 agtagagcta gaaacggctc atccagaact gattttacca gatagtccta cccatcgggt
      181 cgggggaaag atgctagacg gatttgaaaa atatagtcat gtttatcctc tttttagttt
      241 gcaggatgcc ttttctcgtg aagagttaga agcttttgac cagcgagttc gcaaggaatt
      301 tcctcaagca acgtatatct gtgaattgaa gattgatggt ctgtctattt ccctgaccta
      361 tgaagcgggt aatttagtcg tgggtgctac acgtggtgac ggtagtgtcg gtgaaaatat
      421 cacagaaaat ctcaaacgag tggctgatgt tcctttgacc ttacccgaag ctgtggacat
      481 cactgtccga ggtgagtgtt atatgccaaa agcttccttt gaccgtgtta acaaacagcg
      541 tcaggaggct ggtgaagctg aatttgctaa tccgcgtaat gcagcagcag ggaccctccg
      601 ccagcttgat acgggagtgg tggcccagcg tggtctcgct actttcctct accaagaggc
      661 tagtccatct gaagcgacta gtcagtcaca agtactggag aaactggatg ctctgggatt
      721 tgtgaccaac cacgaatatt gcttggcgga gtcgattgat gacacgtggg attttattga
      781 aaaaatagca gagcgtagag atgatttacc ctatgagata gatggtgttg tcatcaaggt
      841 aaatgattta gctatacaag aagaactagg atttacagtt aaagcaccac gatgggcagt
      901 agcttacaag tttccagctg aggaaaaaga agcagaaatc ttgtcggttg attggactgt
      961 tggccgaaca ggtgttgtga caccaacggc caatcttagt cctgttcaac tggcaggaac
     1021 gactgtcagt cgagcaactt tgcataacgt agattatatc gccgaaaaag atattcgtat
     1081 tggcgatacg gtcattgttt ataaggcggg agatattatt ccagcagttc tgaaagtggt
     1141 ggacaagtat cgaaaagagc aagaaatcat gcccattcct agtcattgtc cgtcttgtca
     1201 gagcgaccta caacactatg aggacgaagt tgccctccgc tgtatcaacc ctatttgtcc
     1261 tagccagctg atgagtaagt tggaacattt tgcaagtcgg gatgctatga atatcgcagg
     1321 gctagggtct tcaatcgttg aaaaactctt tggagcaggc ttggtacacg atgttgctga
     1381 tatttataaa ttaactgttg atgacctatt gaccttggaa ggtttcaaag aaaaatcagc
     1441 tgacaagctc tatcaagcca ttcaaacttc taagagtaac tcagcagaat gcctcctatt
     1501 tggactaggt attcgccatg taggtagtaa ggcaagtaag attttagtag aaaaatttgg
     1561 tgatttagaa actctagcat ttgctgatca agaagcaatt gctttgctag aaggtcttgg
     1621 tcaggttatt gctaagtctt tgacaacttt ttttgctagt gagggtgcgc aacaactttt
     1681 agccgaactt aaggaagcta aggtaaactt aacctatctc ggacaagtag tagatgaaaa
     1741 tgctgcgcta tcgggtatga cagttgtact gactggtaaa ttggagcgaa tgaaacgaaa
     1801 cgaagccaaa gccaaattag aagctttagg ggcaaatgtg gcgggatctg tttctaaaaa
     1861 aactaatctt gtggttgccg gaacagatgc aggcagtaaa ttgaccaaag cacaggagct
     1921 aggtatcgaa attaaagatg aggcttggtt agagagcttg taaaggtaaa acgatggaag
     1981 aaagaaaacg tgctagacta atatataatc cgacctcagg tcaagaaatc atgaagaaaa
     2041 atgtggccga agtattggaa attttggaag gctacggtta tgaaacttca gctttccaaa
     2101 caactgctga gaaagactct gcaaagaatg aagctacacg tgcggcgctt gcagactttg
     2161 acttgattat cgcggctggt ggagatggaa caatcaatga agtcgtcaat ggaattgctc
     2221 cgcttgaaaa acgtccgcag atggccatca taccgactgg caccaccaat gactatgcgc
     2281 gtgccttaaa agtgcctagg ggaaatcctg tagaagcagc taaggttatc ggtaagcagc
     2341 agaccatttt aatggatatt ggtttagcca aaaatcaaaa aaatggtttt catcaagaac
     2401 attattttat caatattgct gcggcaggta cacttacgga gttgacctac agtgttccca
     2461 gtcaacttaa gaccatgttt ggctatttgg cctatgtagt aaaaggagca gaactcctgc
     2521 cacaagtaca atttacacct gttcgtgtag agcatgacga gggagtattt gaaggctcgg
     2581 tttcaatgat ttttgtcgcc ttaaccaatt caattggagg ttttgaacag attgttcccg
     2641 atgctaagtt agatgatggt aattttacct tattgatggt taaaacaggg aatctatttg
     2701 aaattctgca tctgattcgt caagtcttag acggtggcaa acacattgag agtgatttag
     2761 ttgaatacat aaaaaccaag agcctatcca tcgaaaatct gaacccagat aaccgtctac
     2821 tgctcaatct agatggagag tttggtgggg aagcccctgt acgtctgcac aacctatcaa
     2881 accatataga gtttttcgca gatacagatc tggtttctga ccatgcaatc actcttgata
     2941 ctgatcagat gaatcgagaa gatatggcca aacgattcat tgaagaaaca gaccatattg
     3001 atgaagctat taaataggaa gaaaagatga aatactcttt tctttttatt ttacaaaaac
     3061 gaattaaacg cttacaatgg cggtattttc ttgacaaata gatgttttag gagtatcctt
     3121 acatggtatt aaattttaaa aggagaattc gttatgagtt taggcgcatt ggcccttgga
     3181 ttggcctgtc ttggtgtaag tatcggtgag ggactgttgg tggcttcata ccttagttcg
     3241 actgcacgtc aaccagaaat gcaaagtaaa ttgatggctg gtgtattttt gggtgttgcc
     3301 tttatcgagg gaactttctt cgtaaccttg gctatgacat ttgtcttgaa atagtagaaa
     3361 atagagaaat agaaaagggg ggaacctcca ttggaagaac atttaagtcc aacccttacc
     3421 cttggtcccg taacctttga cctgaccatg gtattggttt ctgtcattac catttccatt
     3481 attttcttac ttgttttttg ggctagtcgt cggatggagc tcaagccaaa aggaaaacag
     3541 aatgttttgg agtacgttta cgaattgacc atcaatttta caaaagggaa tcttggcgat
     3601 gcggaagcaa agcggtattc cttgttcttc tttacagtct ttacttttct tttggttgcc
     3661 aataatctag gtttgatgac caaattggaa acagcagaag gacataattt gtggacttct
     3721 ccaacggcca atatggctta cgatttcggt ttggcaacaa ttgcaacagt attttgtcat
     3781 gttgagggta ttcgtcgtcg cggtttcaag gcatacctca aatcttttgt gacaccctgg
     3841 gctatggctc caatgaacat tttggaagaa gtgaccaacc ttgtgtcgct tgctcttcgt
     3901 ctgtacggta acatttatgc tggtgaagtg cttgtctctc ttcttctaca attatctcaa
     3961 caaagtgcac ttgcatatcc aattgccttt gctctgaacg ttgtttggac agcattttct
     4021 gtattcattt catgcttgca gggatatgta tttatcatgt tggtatctat gtacttaaat
     4081 aaaaaaatca gtagtgagag tgaataggaa agggaaagac aactatggca acaactatta
     4141 caatgcaatc tagtaccatt cttggaaact ttatcttggt aacagcctca tttgcagtac
     4201 ttattattct tattcgtgtt tttgcatggg ataaaattac aggtattttt gaagaacgtg
     4261 ccaataagat tgcgaacgat attgatgctg cagaagaaaa attaacagca gcagcaaacc
     4321 ttgttcaaca acgtgaagat gagttggtac agggacgtat tgaaagtcaa aagattattc
     4381 aagacgcggt tgaacgcgca aaactagaga aaaaacgcat tcttgagcaa gcagatgttg
     4441 aaattcaagg attgaagcaa aaagctcaat tggaaattga agctgaaaaa cgtgaagcac
     4501 aagaaaactt gcgtgttcaa gttgctgaat tggcagttga tcttgcaagc aaaattattt
     4561 tggaagattt ggaccaacaa gctcatagta acttgattga ccgttatttg gacaaactag
     4621 gagacaagta gatgaacgct agagaaaatg ccatcgtgca aaaatatgct ctatcatttg
     4681 ttgaaaaagt cagtgatcat gcagatattt gggatatgta tgaccagatt tctgacttga
     4741 tttccatcat tcatgatagt aagctgaatc gaatcttgct gtcagcgaca gtatcgagag
     4801 aagaaaaggc tgactttgta aggacggtac gtcaatctag tttctggcaa atcaatgact
     4861 tgattgaaga tgttattcgt gatggtcatg cagacttgct tcttgaaacc cttgagcgtg
     4921 tccaattaca aatcagtaaa tttaaaaatg aatttgaagc ccgtgtggtt tcagtctatc
     4981 cgttgacaga agctcaaaaa gagcgtctcc gtcacttggt agaacaacga ttttccttgc
     5041 gtgtgcgcaa tatcacggaa gaacttgatc aaagtctcct cggtggtttt attgtaacgg
     5101 ttaaccataa ggtaatcgat gcaagcgttc ggacacagtt gaaggacgtt agaaaaaaac
     5161 tttagaaaat agaaagtggt gttcttttga ttaatgcaca agaaattagc gctttactaa
     5221 aacaacaaat tgaaggcttt cagcctgact ttgactacac agagactggt gtcgtaacct
     5281 atatcggtga cggtatcgcc cgtgcgcaag gtcttgacaa tgccatgagt ggagagcttt
     5341 tggtatttga aaatggcacc attggtatgg cacaaaactt agaaaccaac gatgttggta
     5401 ttatcattct cggacaattt actgatattc gtgaagggtc agttgttcgt cgtactggta
     5461 aaattatgga agtaccagtt ggttcggctt tgattggtcg tgtcatcaac ccacttggtc
     5521 aaccggtgga tggtcttggt gaaattcgta ctagtaagac tcgtccgatt gaatatccag
     5581 caccaggtgt tatgcaacgt aagtcggtta atgaaccgct tcaaactggt cttaaggcta
     5641 ttgacgcttt ggttccgatt ggtcgtggtc agcgtgaatt gattatcggt gaccgtcaga
     5701 cagggaagac atctgtagct attgatgcta ttctcaacca aaaaggccaa gacatgattt
     5761 gtatctatgt ggctatcggt cagaaagagt caactgttcg tactcaggtt gaaacccttc
     5821 gtcaatatgg tgctttggat tacacaatcg tagtaacggc atctgcttca caaccgtctc
     5881 cattgctttt cttggctcct tatgctggtg ttgcgatggc agaagagttc atgtatgaag
     5941 gcaaacacgt cttgattgtt tacgatgatt tgtcaaaaca agcggtagct taccgtgaat
     6001 tatccctctt gcttcgtcgt cctccgggtc gtgaagccta tccaggggat gtattctact
     6061 tgcacagtcg tttgctagag cgttcagcaa aggtttcaga tgaattgggc ggtggctcca
     6121 ttacagctct accattcatc gaaacacaag cgggagatat ttcagcttac atcgcgacca
     6181 acgtgatttc tatcacggat ggacaaatct tcttgaagga cgatttattc aactctggta
     6241 tccgtccagc cattgatgcg ggttcttctg tatcacgtgt aggtggctct gcacagatta
     6301 aggccatgaa aaaggtggca ggtacccttc gtatcgactt agcttcttat cgtgaattag
     6361 aagcctttac gcaatttggt tcggatttgg atgcagcaac tcaggccaaa ctcaaccgtg
     6421 gtcgtcggac tgtggaagtg ttgaaacaac cattgcataa gccacttcca gttgaaaaac
     6481 aggttttgat tttgtatgct ttgacaaatg gcttcttgga ttcagtgcca attgacgata
     6541 ttttggcatt tgaagaagaa ctgtactcat attttgattt gcactacgat ggtcttttgg
     6601 atgttattcg tacaacaaaa gatcttcctg atacagatga attgaatgct gctatccaag
     6661 ctttcaaaga ccagtctgtc tttaagtaaa ggagtgaata atggcaggtt ctctcaatga
     6721 aatcaagtca aaaattgcat ctactaagaa aaccagtcaa atcaccggtg ccatgcagat
     6781 ggtttcggct tctaaactag ccaaatcaga gcaattagcg caatcctttc aaatctacgc
     6841 tagcaaggtt cgtcagatta caacggatct cttgcgtgga gaattgatgg cttcagatac
     6901 aagcaatcca atgctgattc gtcgtccagt tcaaaaatct ggttatattg tcattacctc
     6961 tgacagtgga ctaaaaggtt cttataattc cagtattttg aaggctgtga tggggatgat
     7021 tgaacaggac catgactcaa aagatgagta tgagattatt gccattggta gtatgggagc
     7081 tgatttcttc cgtgctcgtg gtatcaatcc tgtctttgaa ttgcgtggtt tagcagacaa
     7141 tccaagtttt gaagaggttc aaaaaatcat ttctaagtct gttgaaatgt acaagaatga
     7201 actctttgat gagttgtatg tttgttataa ccaccatgtc aatagtttga ccagtcaggt
     7261 gcgtgtacaa cagatgcttc ctgtagaaga tttggaccac aatgaagcag atggttatac
     7321 agctaccttt gagttggaac caaaccgtga ggttattttg gaacaactct tgactcaata
     7381 tgcagaatca actatttatg gagcgatttt ggatgccaaa actgctgaaa atgcagcagg
     7441 tatgacagcc atgcagacag cgacggataa tgctaagaat gtcattaacg atttgacaat
     7501 ccaatacaat agggctcgtc aggcagcgat tactcaggaa attactgaga ttgtagctgg
     7561 tgcctcagcc cttgagtaat agaaatagag gaaatagaat gagttcaggc aaaattactc
     7621 aggttgtcgg accagttgta gacgttgcgt ttgcagcaga agataaactt cctgagatta
     7681 acaacgcact cgttgtatat aaaaatgatg attccaaaca aaaagtcgtg cttgaagtgg
     7741 ctttggaact tggtgatggc gttgtacgga ccattgccat ggaatcaacg gatggattga
     7801 cacgtgggat ggaagttctc gatacaggtc gtcccatctc tgttccagtc ggtaaagaaa
     7861 cgctggggcg tgtcttcaat gtgttgggag ataccattga ccttgaagag tcttttccgg
     7921 cagattttga acgtgagcct atccataaga aagcgccggc ttttgacgaa ttatctactt
     7981 caagcgaaat tttggaaaca gggattaagg ttatcgacct cctagcacct tatctaaaag
     8041 gtggtaaggt tggtctcttc ggtggtgccg gtgttggtaa aaccgtcctt atccaagaat
     8101 tgattcacaa tattgcacaa gaacacggtg gtatctctgt atttaccgga gttggcgagc
     8161 gtacccgtga agggaacgat ctttactggg aaatgaaaga atcaggtgtt attgaaaaaa
     8221 cggccatggt atttggtcag atgaatgagc caccaggagc ccgtatgcgt gttgctctta
     8281 ctggtttgac cattgcggaa tacttccgtg atgtggaagg gcaggatgtt cttctgttca
     8341 tcgataatat cttccgtttc acacaggctg gttcagaagt gtctgccctc ttgggtcgta
     8401 tgccatcagc cgttggttat cagccaacac ttgcaactga gatgggacaa ttgcaggagc
     8461 gtattacctc aaccaagaag ggttctgtta catctattca ggctatttac gtacctgcgg
     8521 atgactatac agacccagct ccagcgacag ccttcgctca cttggattca acaactaact
     8581 tggagcgtaa gttgactcag cttggtatct accctgcggt ggatccattg gcttcgtcat
     8641 cacgtgctct tgctccacaa atcgttggtg aagagcacta tgcagtagct atggaagtaa
     8701 aacgtgtcct tcaacgttac caagaattgc aagatattat tgccattctc ggtatggatg
     8761 aattatcaga tgaagagaag accttggttg gtcgcgctcg tcgtatccaa ttcttcctct
     8821 ctcaaaactt caacgttgcg gagcaattta caggtatgcc aggttcttat gtgccagtag
     8881 ctgaaacggt gaaaggcttt aaggaaatct tggacggcaa acacgaccat ctaccagaag
     8941 atgccttccg aaatgttggt tcaattgagg atgtggtcgc taaagctgct aaaatgaaat
     9001 tctagaggtg gcttatggga caaatgactg tacaaatcgt aacaccagac ggtatcaaat
     9061 atgaccatca tgcagtattt gttttggtca aaacggttga tggtgagatg ggtgtctatt
     9121 ctggacatga agaattgatt gcagttttgg aaatcggtga aatgaaagtg cgtcgtgttg
     9181 atgatgaaaa ccatgtagac tggattgcgg tcaatggtgg aatcattgaa gtcaacaagg
     9241 atattattac ggtcatttct gattccgctg agcgggaacg ggatattgat attagtcgtg
     9301 cagaacgtgc caaattgcgc gcggaacgtg aattggaaga agcacagact gctcgtaata
     9361 ttgatatgga gatgcgtgca acagtcgccc tccaacgtgc gataaatcgt attcgtgttg
     9421 ggaaacatta atctatatgg gattgaactt ggttcagttc catttt
//
LOCUS       DASGBY010000073         9287 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.073, whole genome shotgun sequence.
ACCESSION   DASGBY010000073 DASGBY010000000
VERSION     DASGBY010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9287
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.073"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..659)
                     /locus_tag="U1396_001327"
     CDS             complement(<1..659)
                     /locus_tag="U1396_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5342515.1"
                     /translation="MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGAS
                     KPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYGNEDLAEKRDAMM
                     TEIYDDYYDELPEEEKIVVDTLCSLFDVLDTDSQEYGKEILDDYLHQSYHRSKLSIND
                     LMILRLFIEHCQLEDLSVGTSNYALFTDLIEKLPQSIYDVHSESLFIVRDLFLAIVRI
                     L"
     gene            complement(906..1544)
                     /locus_tag="U1396_001328"
     CDS             complement(906..1544)
                     /locus_tag="U1396_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEM5342516.1"
                     /translation="MTTPTFIWDLDGTLLDSYEAILAGIQETYEQFDIPFDREEVRNF
                     ILRYSVKDLLVRDADKYGLDSDELNHVRATSLKEKNTQIPLMTGAVEILNWTAEQGIQ
                     NFVYTHKSDNAFQVLEDLGIRHHFTEILTSDSGFARKPSPEALLFLIEKYGLDKESTY
                     YIGDRLLDVETAINAGIRSINLQINGVEQNWKIVSLLDIKQILTDKSSHNNL"
     gene            complement(1546..2292)
                     /locus_tag="U1396_001329"
     CDS             complement(1546..2292)
                     /locus_tag="U1396_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342517.1"
                     /translation="MAEQMRRVARLFGDWPETIIWTCLEGTMGDIYVDDSQSPQSALA
                     LYGRQSFFGFLAGQPHRDLLKICEGKNIILVPQNQAWSDLIEEVYGDGVRFFTRYATK
                     KDTEFDLGHLQKLVDDLPESFDMKLIDRNLYETCLVEEWSRDLVGNYIDVEQFLDLGL
                     GCVILHKGQVVSGASSYASYSAGIEIEVDTREDYRGLGLAKACAAQLILACLDRGLYP
                     SWDAHTLTSLKLAEKLGYELDKAYQAYEWR"
     gene            complement(2292..3293)
                     /gene="ruvB"
                     /locus_tag="U1396_001330"
     CDS             complement(2292..3293)
                     /gene="ruvB"
                     /locus_tag="U1396_001330"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEM5342518.1"
                     /translation="MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIE
                     AAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDL
                     EPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
                     RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTP
                     RIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGG
                     GPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK"
     gene            complement(3588..3761)
                     /locus_tag="U1396_001331"
     CDS             complement(3588..3761)
                     /locus_tag="U1396_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342519.1"
                     /translation="MKQTTYTLSLGGNDSGDSKVSKMEKKFEKYMEGIAERLRRSGKR
                     SIDKWIIRVRIEE"
     gene            complement(3863..5575)
                     /locus_tag="U1396_001332"
     CDS             complement(3863..5575)
                     /locus_tag="U1396_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342520.1"
                     /translation="MNRRLVGVLLKSLNKTMFLFGIALSALGVGMGLFLPQFIGQLLD
                     QTYLSNLLTRPELLAGFILFFVSVYTVQALSNYFIGRSGGNALKQLQQYIYESLLTTY
                     VKDLDQYQSGDLASRLTNDMSVVLNFITVILPNFLMNGLMVIGSIYFLWTISPWLTGL
                     SLLLLPMLSMVMIPMNQRLEGYYSAYQEGLGQVSSRISHKFTTIRLMKAFQGEKHEQR
                     EMGKSFQKLSQTFERMIRLSAVQHTLVSSLMTGFIILMLLVAGIEVTKGVMTMATLTT
                     FVLYMMQLIDPVTDIASSLNELTEFQAVSKRLVELLELTKEEQADTELVDEASIQLEN
                     VRFSYHTDPVLNGVSVRIPEGAHVAIVGPSGAGKSTIFALLMKYYQDYQGEIRIGQQC
                     LSDISTKEMRRLISFIPQDNTLFHGTIRENLLYGKNESVSEERIAHILKELGLSHLVA
                     ELEDGLDTRISENGTGLSEGQKQRFSIARALLLEHPIYLLDEATASLDTVTERVISKA
                     IDRLTAGKTRLTIAHRLHTVREADAILVLDKNGQVADYGPHQQLVERNHLYQDFLRGL
                     PQAS"
     gene            complement(5578..6348)
                     /locus_tag="U1396_001333"
     CDS             complement(5578..6348)
                     /locus_tag="U1396_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342521.1"
                     /translation="MKQIFPAIFKTIWKRKETQIYLLFTLFPFIYLVTSFIEGSNFMQ
                     IHASEGSVSLVAFTNMMMSSVDSFILPSLTLYFLAISVFRKEVDEHTMFLYRDLGRKQ
                     IFWSKYLGLLATIVIFYGLFFATSAFVHYVRVIHLPFGSPSVFDTSLAESLSNVFCIV
                     AYLLKDILSVSLATALCLYLKNITTMIIGFLVTITMMILAVVGGPVAMIFPTSYMPLA
                     SEGLTGVGLAYLGAIGVTLVYALVFTKIAAKKFKNLEF"
     gene            complement(6354..7226)
                     /locus_tag="U1396_001334"
     CDS             complement(6354..7226)
                     /locus_tag="U1396_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342522.1"
                     /translation="MLKINHLSKQFAGNEFYSLKDVSLEINKGEIVGLIGKNGAGKST
                     LMKLIAKSLKPSSGTITYKGTDIFSQDNLLADFGIMIDPVFYPEMTVMDNLKFYLDLH
                     GKKDLYPNIEKTLKLVELWEARNRKPKGFSFGMKQRTALAIALVAEPDFLILDEPFVG
                     LDPIGVQKLIDILKQWSSERQISMLISSHQLGELEALCSRYVYIESGELAEAFEGKSH
                     PSVLVQLNTTKNLDSVEALLNDHVVLEGEVLEISTATPTSELNQIFGVLARQELIVKL
                     EVKENHLKEIFTKG"
     gene            complement(7219..7647)
                     /locus_tag="U1396_001335"
     CDS             complement(7219..7647)
                     /locus_tag="U1396_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342523.1"
                     /translation="MIFILLLSLLYTCLTVVSSQLLLSLSVPILLLLTYLLPPIVNSI
                     CLGLLKDNSWKAWSAGIFPTMSMIFYAAFAYITSSNGQWAQFSQLNTVSDDVMSVEVA
                     SNLLAPSQILFVAVVYYGVAIATYFIQQTSRQKEKGVTYA"
     gene            complement(7662..8240)
                     /locus_tag="U1396_001336"
     CDS             complement(7662..8240)
                     /locus_tag="U1396_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5342524.1"
                     /translation="MVIRYIRPVALSIALIILASISYLLATSLVLFSPSQFLQVAYLF
                     SIMVGMPVGFILFPSMLTKRYQLCQELSEVKFSWKSFVLLAIAIFLINFWCIQSDEYV
                     NQFIIATCEEFLFRYLIYRILKSEYPTWLAMLVTSLLFGVLLHMNYPLLDNLIIRTPL
                     GLLFSVLATRFGLQYAIGGHWIYNLLVSRFPF"
     gene            complement(8250..8978)
                     /locus_tag="U1396_001337"
     CDS             complement(8250..8978)
                     /locus_tag="U1396_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEM5342525.1"
                     /translation="MNMFWSIFKSVIHRRDVALFYAFAGLPILVPILSKFLVGVKAEY
                     TDNFLDFLGAALATQDGIVLPILLLSLIISAVFRDEIDSGILFLYKDLNRTRLFNAKI
                     ISLVTMYASYVLLTMLTSAIAYFGFLNASGKVVSDDWNNVQSTFLSIFATISINVIGI
                     LLVAMVSIKAKSLQAVLAGVFWSLFTTTAPFLIGVRYVVPNGYAQMSFNQPLLAWSLV
                     AAITTLYIVATYLKGRSNFEKLEF"
BASE COUNT         2934 a         2163 c         1633 g         2557 t
ORIGIN      
        1 aataaaatac gaacaatagc tagaaataaa tcgcggacaa tgaataagga ttccgaatgt
       61 acatcataga ttgattgagg caatttctct atcaaatctg taaataaagc ataattggaa
      121 gttccaacag ataaatcctc caactgacaa tgttcaataa ataatcgcaa aatcattaaa
      181 tcgtttatag atagtttgga acggtgatag ctttgatgta aataatcatc aagaatttct
      241 ttaccgtatt cctggctatc tgtatccaat acatcaaata gggaacatag ggtgtctaca
      301 actattttct cctcctcagg caattcatca taataatcgt catagatttc tgtcatcatg
      361 gcatctcgct tttccgccaa atcttcatta ccataagttg gggtgcgaag cacatcaaac
      421 ttcagcttgg aatatctttc gggtaaagat acataatctg gcataagctc gtaaagtccc
      481 atacctaaac gagttgcaat atactgaatc tttgaaaaag tcggcttgga agcacctgct
      541 tcaatacgag ttaattggcg cacagagagt tccagttcat cgtcacaaaa ctgttcacgt
      601 gtcatactag cagattctcg taattgacgc acacgctgtc caaactcctt atcgttcata
      661 aaccacacct ccaaatatac tttttaaatt atatcaaata tattacacaa attccatatc
      721 atgctcttct taaaacagac ggctggattc gtttttatta tagcttgaag ccataacaag
      781 ataaaagccc gatgttacgg gcattcgtca agtaatcata gcactaacct gaacgaagtt
      841 cagcggacgt ctttagacat cgctggagag aaacagctta tagctggtgt acaagccacc
      901 cgttttcaca ggttgttatg acttgattta tctgttaata tttgttttat gtccaataaa
      961 gaaacaatct tccaattctg ctccacgcca ttaatttgca gattgatact acgaataccc
     1021 gcattaatag ccgtttccac atcgagcaga cggtcgccaa tatagtaggt gctttcctta
     1081 tccagcccgt atttttcgat gagaaatagc agagcttctg gacttggttt gcgggcaaag
     1141 ccagaatcgc tggtcaagat ttctgtgaaa tggtggcgaa tgcccaagtc ctccaagacc
     1201 tgaaaggcat tgtcactctt gtgggtatag acaaaatttt gaatgccttg ttccgcagtc
     1261 cagtttaaga tttccaccgc acctgtcatc aagggaatct gcgtattctt ctccttcaag
     1321 gaagttgcac gcacatgatt gagctcatcg ctatccagac cgtacttgtc cgcatcacgc
     1381 accagcaaat ccttgacaga atagcggagg atgaaatttc ttacttcctc tcgatcaaaa
     1441 gggatgtcaa attgttcata ggtttcttgg ataccagcca aaatggcctc gtaagaatct
     1501 aaaagtgttc catccaaatc ccaaataaag gtcggtgttg tcattctatc tccattcgta
     1561 tgcttgatag gctttatcta gttcatagcc cagtttttcc gcaagtttca aggaagtcag
     1621 tgtatgggcg tcccagctag ggtagagccc gcggtctaaa caagctaaaa ttaactgagc
     1681 cgcacaggct tttgccaaac ccagacctcg atagtcttcc ctagtatcca cttctatctc
     1741 aatcccagct gaatagctgg cataggatga agcccctgag accacctgtc ccttatgcaa
     1801 gatgacacag cccagaccca agtccaaaaa ttgttccaca tctatataat ttcccaccaa
     1861 atcccgtgac cattcctcta ccagacaagt ctcgtacaga ttacggtcaa tcagtttcat
     1921 atcaaagctt tcaggcaagt catcaaccag tttctgtaaa tgcccaaggt caaactcagt
     1981 gtcctttttc gtagcgtatc gagtaaaaaa acgaactccg tctccgtaaa cttcttctat
     2041 caagtctgac caggcttggt tttgggggac tagaataata ttctttccct cacagatttt
     2101 tagcaagtct cgatgtggct ggccagctaa aaaaccaaag aagctctgcc gtccatagag
     2161 agctagagct gactggggtg actggctgtc atcaacataa atgtctccca tagtaccttc
     2221 tagacaggtc cagattatcg tttcaggcca gtctccaaat aaacgagcta ctcgtctcat
     2281 ctgctctgcc attatttttc cgtataggga tagcccaggt gttcgtaagc cttggctgtc
     2341 gcaacccgcc ccgtccgtgt ccgcatgagg aagccctgct gaatcaggta aggttcgtac
     2401 atgtcctcca ccgtctcacg ctcctcggca atattgaccg acagagtgtt gaggccgacg
     2461 ggaccgccgc cgtacatctc aatcatggtg cggagaatct tctggtccac gtagtccagc
     2521 ccctcgcggt ccacatccag catggtcagg gccttgtccg taatgttatc atcaatcagg
     2581 ccgtctccca taatctgtgc gaaatcccgc acccgcttga gcaagcggtt ggcgatacgg
     2641 ggagttccac gagaccgacg agccagctca atagcagctt catgagtaat ctccatgtca
     2701 aagatgtccg ctgttcgctc gacaatctcc gtcaaatcag ccagttcata atactccata
     2761 tgaccggtaa taccaaaacg ggcccgcaga ggattggata gcatacccgc acgagtggtt
     2821 gctccaatca gggtaaacgg tggcaactcc aaatgcacgg agcgactggc ctcccctgct
     2881 ccaatcataa tgtcgatgta gaaatcctcc atagcagagt agagaatttc ctcgaccgcc
     2941 atgggcatac ggtggatttc atcgataaag aggacgtcgc caggctccaa gtcgttgaga
     3001 agggccacca agtcacccgc tttttcaata acaggaccac tggtctgctt gatattgacg
     3061 cccaattcgt tggcaatgac aaaggccatg gtggtcttcc ccagacccgg tgggccaaaa
     3121 agaagggtat ggtccaaggc ttcatcacgg agcttggccg cctcgataaa gattttgagc
     3181 tggtccttga ccttatcctg accgatgtat tcatttaatt tctgcggacg cagggtacgc
     3241 tcaacatact cctcgtcctg catttgttcc atatctaaaa ttcgatttgt catgaaacca
     3301 ttatagcata aaatgaaaat accagactca gtgagtccag tattctcagg agattatata
     3361 atccctagtc cttgtcgctt gcgacttaga gatacggatt gaaaagatat gccagccgtt
     3421 tgagctttag ctcttacgga tgacgatatt gaaactattt cagtaaaagt ctcgctattt
     3481 ctagcttgaa taaagtataa ctcgccaaac ttaagggaaa ctaaaagaga attcattcta
     3541 tttttcacta tttataaaaa cgtctgtgaa ttttggtcat agctacttta ctcctcaatc
     3601 cgcacacgga taatccattt atcaatactc ctcttcccag aacgccgtaa ccgctctgcg
     3661 atcccctcca tatatttttc aaactttttt tccatctttg aaactttcga atccccgcta
     3721 tcatttcctc ccaaagataa tgtgtaagtt gtttgtttca ttctcttctc ctatctattt
     3781 attgtgcaag taatcatcag tattccattt tattattagg taaccctaga cttagactag
     3841 tcggtccatc gactcccatt cactaactgg cttgcggtaa gcctcttaag aaatcttgat
     3901 agagatgatt tctctccact aactgctggt gaggaccata atcggctact tgcccatttt
     3961 tatctaagac cagaatcgca tccgcctcac gcactgtgtg caaacggtga gcaatggtta
     4021 gccttgtttt cccagctgtt aaacggtcaa tcgctttgct aatgacacgt tctgtgacag
     4081 tatctaaact tgctgtcgcc tcatccaaca aatagatagg atgctctaac aacaaggctc
     4141 tcgcaatgct aaatcgttgt ttttggcctt ccgacaaacc tgtcccattt tctgaaatcc
     4201 gagtatctaa accatcttcc aactcagcta ctaaatgaga caatcccaac tccttgagaa
     4261 tatgagcaat acgctcttca gacactgact cgttctttcc atacaataga ttttctctaa
     4321 tcgtcccatg gaagagggta ttatcttgag gtataaagga aatcaatctt ctcatctcct
     4381 tggttgaaat atcacttaag cattgttgac caatccgaat ctctccttgg tagtcttgat
     4441 agtatttcat cagcaaggca aaaatagttg attttcctgc tccacttgga ccaacaatcg
     4501 ccacatgagc tccttcagga attctaaccg atactccatt caaaaccgga tctgtatgat
     4561 aggaaaaccg aacattttcc aactggatac tagcttcatc aaccaactct gtatctgcct
     4621 gttcttcctt agtcagctcc agcaactcta ccaaacgttt agacaccgcc tgaaactccg
     4681 ttagttcatt taaggaagag gcaatatctg ttactggatc aatcagttgc atcatgtaca
     4741 atacaaaggt tgtcaatgta gccatggtca tcactccctt ggtcacttct atacctgcta
     4801 ccagcaacat cagaatgata aaacccgtca tcaagctact aaccaaagta tgttgcaccg
     4861 ctgacagtct aatcattctc tcaaaggttt gcgacagttt ctgaaaagac ttgcccatct
     4921 ctcgttgttc atgcttttct ccctgaaagg ccttcatcaa acgaatcgtt gtaaatttat
     4981 gactaattct actagaaacc tgccctaatc cctcttgata agcagagtag taaccttcca
     5041 accgctgatt cattggaatc ataaccattg acaacatagg aagcaacaag agactaagac
     5101 ctgtgagcca cggactgatg gtccacagaa aataaattga cccgataacc atcaaaccat
     5161 tcatcaagaa atttggaaga ataacggtga tgaagttcag aacaaccgac atatcattgg
     5221 tcaaacgact ggcaagatca ccggattggt actgatccaa gtcctttaca tatgtggtca
     5281 acaaggattc ataaatatat tgttgcaact gtttgagtgc gttaccacca ctacgcccga
     5341 tgaaataatt ggatagggct tgtaccgtat aaaccgatac aaagaaaagg atgaagccag
     5401 ccagcaattc tggtcgtgtt aatagattgc ttaaataggt ttgatctagc aactgaccaa
     5461 taaactgggg aaggaataag cccattccaa ccccaagagc actcagcgct attccaaaca
     5521 agaacatcgt tttattgagc gatttcaaca atactcctac gagtcttcta ttcataccta
     5581 gaactccaaa ttcttgaatt ttttcgcagc aattttagta aatacgagtg cgtaaacaag
     5641 cgtcacacca atagctccta agtaagcaag tcccactcct gttagacctt cgctcgctaa
     5701 aggcatataa ctagttggaa aaatcatcgc aactggaccg ccaacaactg ctaaaatcat
     5761 catcgtaatc gtcaccaaga atcctatgat cattgtggta atatttttca gatacaaaca
     5821 aagagcagtt gccaaactaa ccgataaaat atcttttagt aaataagcga caatacaaaa
     5881 cacattactc aaactctctg ccaaactagt atcaaaaacg gacggactgc caaaaggcag
     5941 gtgaattact cgaacataat gtacaaatgc agatgtcgca aagaagagac catagaaaat
     6001 aacaattgtt gctaagagac ccaaatattt agaccagaaa atctgtttcc gcccaagatc
     6061 tctgtataaa aacatggtat gttcatctac ttccttccta aagacagaga tagccaagaa
     6121 atacagggtc aaactaggaa gaataaaact atccacagag ctcatcatca tattcgtaaa
     6181 ggctacaagg ctaaccgacc cctcactagc atgaatttgc ataaaattcg acccttcaat
     6241 aaatgaagtg accagataaa taaaaggaaa caaagtgaac aggagataaa tctgcgtctc
     6301 ctttcgcttc caaatcgttt taaagatagc tggaaaaatt tgtttcatac tcactaccct
     6361 ttcgtaaaga tttctttcaa gtgattctct ttcacttcta gtttcacaat caattcttga
     6421 cgagccagca caccaaaaat ctgatttagc tcactggtag gtgtagcagt ggaaatttct
     6481 aacacttccc cctctagcac cacatggtca ttgagcaaag cctctacaga gtctaggttt
     6541 ttagtcgtat tcaactgcac gagcacactt ggatgagatt tgccttcaaa agcctctgcc
     6601 aattctcccg attcgatata gacatagcgg ctgcacaagg cctccagctc ccccagttgg
     6661 tgactcgaaa tcagcatgga aatttgtcgc tcactcgacc actgcttcaa aatatcaatc
     6721 aatttctgaa caccaatcgg gtccaagccc acaaacggct catctaagat aaggaaatct
     6781 ggctccgcaa ccaaggcaat tgccaaagca gtccgttgtt tcataccaaa cgagaatccc
     6841 ttgggtttcc gattgcgagc ttcccacaat tctactaatt tcaaagtctt ctcaatattt
     6901 ggatagaggt cttttttccc atgcagatcc aaataaaact taagattgtc cataactgtc
     6961 atttctggat agaagacggg atcaatcata atcccaaaat ctgccaacaa attatcctga
     7021 ctaaaaatat ccgtcccctt ataagtaatg gttcctgaac ttggttttag ggacttggct
     7081 attaatttca tgagcgtgga ttttccagct ccgtttttcc caatcagccc aacaatctcg
     7141 cccttattga tctctaaact cacatctttt agtgagtaaa attcgtttcc tgcaaactgt
     7201 tttgataaat gattgatttt aagcataagt aactcctttt tctttctgac gacttgtttg
     7261 ttgaataaag tatgtagcaa tagctacacc ataatacact acagcaacaa atagtatttg
     7321 tgatggagct aacagattac tagctacctc gacactcatg acatcgtctg aaactgtatt
     7381 cagttgagaa aactgagccc actgaccatt actactcgta atgtaggcaa aagcagcata
     7441 aaatatcatt gacattgttg gaaaaatgcc tgctgaccat gctttccaag aattatcctt
     7501 tagcaatcct aaacagattg aattgacaat gggtggtagc aaataggtca acaataacaa
     7561 aataggaacc gaaaggctta acagcagttg cgaacttaca actgtcaaac aagtatacaa
     7621 taaactcaat agtagaataa atatcatcat aaccctcaca attaaaatgg aaatctcgaa
     7681 accaacagat tgtagatcca atgtcctccg atagcatact gcaatccaaa acgtgtagct
     7741 aacacagaga acaataaacc tagtggagtt cgaatgatta gattatccaa caatggataa
     7801 ttcatatgta gcaaaactcc aaacaagaga gaagtgacca acatagctag ccaagtaggg
     7861 tattcacttt tcagaatacg gtagataaga taacggaaca agaattcttc acaagtcgca
     7921 ataataaatt gattgacata ctcatcactt tgaatacacc agaaattgat caggaaaatt
     7981 gcaatagcca gcaaaacaaa acttttccaa ctgaacttta cttccgatag ctcctggcaa
     8041 agttgataac gcttggttaa catagatgga aatagaataa aacctactgg cattccgacc
     8101 ataatggaaa ataggtaagc cacctgtaaa aattgactgg gactaaacaa aaccaaagat
     8161 gttgccagaa gatatgaaat tgacgctaaa ataatcaaag caattgataa ggcaactggt
     8221 ctaatatagc gtattaccat aaaacacctc taaaattcta gcttttcaaa gttcgaacgg
     8281 cctttgagat aggtagcaac aatatataat gttgttatag ctgctaccaa ggaccatgca
     8341 agcagtggct gattaaagct catctgagca tagccattcg gtacgacata acgaactcca
     8401 atgagaaatg gtgcagttgt tgtaaacagc gaccaaaaaa ctcctgctaa aactgcctgt
     8461 aaggatttag ctttgataga aaccatggca accaatagaa taccgataac attgattgaa
     8521 attgttgcaa aaatagatag gaaggtggac tgtacattat tccaatcatc cgatactact
     8581 tttccagaag cattcaagaa gccaaaataa gcaatcgcac ttgtcagcat tgttagaagg
     8641 acataagagg catacatcgt cactaaacta atgatttttg cattaaaaag tcgagttcta
     8701 ttcagatctt tatataaaaa tagaataccg ctatcaatct catccctaaa aactgcggaa
     8761 attatcaagg ataacaacaa tattggtaac acaatcccat cctgtgttgc caatgctgct
     8821 cctagaaaat ctaaaaaatt atccgtatat tcagccttta cgcctaccaa aaatttggac
     8881 agtataggaa ctaagattgg taaaccagca aaagcataga acaaagcaac atcccttcga
     8941 tgtattaccg atttaaaaat tgaccaaaac atattcatat tgtttcccct ttttatcaat
     9001 aagatagatg agcaataact ccctcactta tttattcgta aacaaaaaga aaaattctct
     9061 ggaaaaacca aagaatttta atactcatat ttcaccatca attatggtct caaataatgt
     9121 gccgccacat aaccaacaac gaaacctgta actgcagcta ctagcatgtg tttctcctcc
     9181 ttcataatat aatactcttt cttcaatttc ctattagttt tgaatacaat aaacaataat
     9241 tcctacaccg acaccgataa tgaatgctga taccataaat ttctcct
//
LOCUS       DASGBY010000074         9235 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.074, whole genome shotgun sequence.
ACCESSION   DASGBY010000074 DASGBY010000000
VERSION     DASGBY010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9235
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.074"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(317..955)
                     /locus_tag="U1396_001338"
     CDS             complement(317..955)
                     /locus_tag="U1396_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEM5342526.1"
                     /translation="MRWGIVVEQLTVLYQNLKRRYGEFHWWNDENPIKDLVSMILIQQ
                     TTEANAKRALEQLEGRLTIHSLLEMPVEDLQECIRPAGFFKQKSLYIRSVVEWANQFD
                     GDFSRLDRVETAVLRKELLSLKGVGNETADVILLYLCRRSIFVADQYALRLFNRLGLS
                     QSQDYLSLRQEFTEQIKDWSVKDAQELHALIDEHGKQFRLTKGQLDESWLMI"
     gene            complement(1003..1923)
                     /locus_tag="U1396_001339"
                     /pseudo
     CDS             complement(1003..1923)
                     /locus_tag="U1396_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922588.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
     gene            complement(2025..2651)
                     /locus_tag="U1396_001340"
     CDS             complement(2025..2651)
                     /locus_tag="U1396_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5342527.1"
                     /translation="MKIAIIAANGQAGQTIAKEAVERGHQVTAIVRSENKSVAQEVIQ
                     KDAFALTKEDLAGFDVVVNAFGAWTPETLPDHARLAEHLATILAGSPTRLLVVGGAGS
                     LYLDESQTAMLKDTPDFPAEYLPIAEAMGTGLDLYRQATAVNWTYISPAADFDAEGQK
                     SGAYTLAGEVFQVNAQGESYISYADYAVALVDIAEKGGYQQERISVLA"
     gene            complement(2890..3309)
                     /locus_tag="U1396_001341"
     CDS             complement(2890..3309)
                     /locus_tag="U1396_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5342528.1"
                     /translation="MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRN
                     ILSQLKEAGLVEVARGVGGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSC
                     QVGRNIHPLLDSRLENAQSALENELAKTRLADLLAEL"
     gene            complement(3352..4419)
                     /gene="dinB"
                     /locus_tag="U1396_001342"
     CDS             complement(3352..4419)
                     /gene="dinB"
                     /locus_tag="U1396_001342"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEM5342529.1"
                     /translation="MLIFPLINDLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGAD
                     PRLSGGRGVVSTCNYEARAFGIHSAMSSKEAYECCPQAIFISGNYEKYQEVGRQVREI
                     FHRYTDLVEPMSIDEAYLDVTENKLGISSAVKIAKLIQYDIWNELHLTASAGVSYNKF
                     LAKIASDMEKPYGLTLILPEDAVGILASLPVEKFHGVGKKTVERLHEMGVYTGQDLLD
                     VPEMVLIDRFGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTYRKLLYREEDVLKEL
                     ISLCQRVAASLKRNGKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIE
                     EIGKIEKGIRLLGVTVTNFQT"
     gene            4734..7079
                     /gene="pflB"
                     /locus_tag="U1396_001343"
     CDS             4734..7079
                     /gene="pflB"
                     /locus_tag="U1396_001343"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM5342530.1"
                     /translation="MSTKVKTKNVAEDIFAQAWEGFKGTDWQDKASVTRFVQANYTPY
                     DGDESFLAGPTERSLHIKKIIEETKAGYEDTRFPMDVDRATSIADIPAGFIDKENELI
                     FGIQNDELFKLNFMPRGGIRMAETTLIENGYTPDPLLHEIYTKHATTVNDGIFRAYTA
                     DIRRSRHSHHVSGLPDAYSRGRIIGMYARLALYGADYLMEEKVADWNAITEIDEESIR
                     LREEINMQYQALQQVVRLGDHYGVDVRKPAMNTKEAIQWTNIAFMAVCRVINGAATSL
                     GRVPIVLDIYAERDLARGTFTESEIQEFVDDFVLKLRTVKFARTKAFDEIYSGDPTFL
                     TTSMAGMGNDGRHRVTKMDYRFLNTLDNIGNSPEPNLTVLWSDQLPYSFRRYCMAMSH
                     KHSSIQYEGVTTMAKDGYGEMSCISCCVSPLDPESEDQRHNIQYFGARVNVLKALLSS
                     WNNGYDDVHKDYKVFDGVEPNTSEIFDYDQVIANFEKALDWLTDTYVDAMNIIHYMTD
                     KYNYEAVQMAFLPTHLRANMGFGICGFANTVDSLSAIKYAQVKPIRDEDGFIYDYEVT
                     GDFPRYGEDDDRVDDIAKWLMEAFFSRLNKHKLYKNAEATVSILTITSNVAYSKQTAN
                     SPVHRGVFLNEDGSVNTSKVEFFPPGANPTSKSRGGWLQNLNTLSKLNFKHANDGISL
                     TTQVSPKALGKTFDEQVNNLVTILDGYFEQGGQHVNLNVMDLNDVYDKIMAGEDVIVR
                     ISGYCVNTKYLTKEQKTELTQRVFHEVLSMDDHAAEVSGQA"
     gene            complement(7490..8437)
                     /locus_tag="U1396_001344"
     CDS             complement(7490..8437)
                     /locus_tag="U1396_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HEM5342531.1"
                     /translation="MRQAILDKISEQIGQGVYPGASLALFSEGQWQEYYLGTQDGHTP
                     VEAGLTYDLASVSKVVGVGTLATFLVNSGALELDRTLQSYYPAFVDSQVTIRQLLTHT
                     SGIDPFIPNRDSLDADQLKEAILKITVTDKKDFLYTDINFLLLGFLLEEIGGDRLDQL
                     ISRDVLEPFGMSQTSFGPVSQAVPTVRGVKAGLVHDPKARVLGLHAGSAGLFSTVKDL
                     EIFLERYLTEDFAANLTQDYGFDDKRKRSLAWDKKGDWLSHTGYTGTFIMYNRPLQKA
                     AIFLSNRTFDKDERAQWKLDRNQVMALIRQVLEEEEAID"
     gene            complement(8434..9168)
                     /locus_tag="U1396_001345"
     CDS             complement(8434..9168)
                     /locus_tag="U1396_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5342532.1"
                     /translation="MLRKNEAIVPVLRINNRAINQGFLEKNLGMKTKLEDGSFADFGD
                     RTSPETKLVLTESPGNRTRAVEGLKKLNKIVIKVDNASEIEALLAQGSQYSKLYQGKN
                     GYGFEAVSPEGDTFLLHAEASVDDLKAILPPVPFKMQDDFSGLTAFTVESIWINTPQA
                     SISQDYYEAILPQQAFLRFVGAEGEDLLTPAEQVWDLEGLRFPVEQDFDWAHLESQLE
                     GPFFKDKKASFIQTVDPSGIELWFEK"
BASE COUNT         2717 a         2194 c         1725 g         2599 t
ORIGIN      
        1 taatcatttt atcttggaaa ataactccaa ttaatataaa aaaagagcaa ccaactgaac
       61 cgctggtttt actcttttat agtcgtttcg tttgctttta gtacaaggca acgatatgca
      121 ggctacttca actgtccagt ggagtgttta aactcggaaa taaggaaatg agacttcctc
      181 gcccttcagt aataaaaaat acactaattg atactcaatg aaaatcaaaa tcaagctagg
      241 cgacgcaaat gcagatagaa ctgaggttca tcaaatcatg tcaacaacgt ctgattttga
      301 ttttcgaaga gtatgactat atcatcaacc atgattcatc aagctgcccc tttgttaacc
      361 tgaactgctt gccatgttca tcaatcagtg catgaagctc ctgagcgtct tttaccgacc
      421 aatcttttat ctgctctgta aattcctgtc tcaaactcaa ataatcctga gactggctaa
      481 gtcctaaacg attaaatagc cgaagagcat attgatccgc cacaaaaata cttcttcgac
      541 acaaatagag caaaataaca tccgcagttt cattgccaac ccccttcaag ctcagcagct
      601 cttttcgaag tactgctgtc tcaacacgat ctaggcgaga aaaatctcca tcgaactgat
      661 tggcccactc aaccactgac cgaatgtaga gtgatttttg cttgaagaat cctgctgggc
      721 gaatgcattc ttgtaaatcc tccacaggca tctctaaaag cgaatgaatt gtcaaccgtc
      781 cctccaactg ttctaaagca cgcttggcat ttgcttccgt tgtttgctga ataagaatca
      841 tagataccaa atcctttata ggattttcat cattccacca gtgaaattca ccatatcgcc
      901 gttttaaatt ttggtaaaga accgtcaact gttccactac tatcccccat ctcaccttgt
      961 ttctccttgc cattatagca cgatgagtaa agggatacaa tactacagtt cctctagtac
     1021 tattgtatct acaatcgctt caaactgctc tgcttcaacc tctggaaaat aattcaaaca
     1081 attggctgtt gcaaaggctg ccgcttcttt caaaaagatt tctggggctt gaccttgact
     1141 gattcctttg actagcaagc ccaggtagaa atcccctgcg gcaataggat tacgcgtttc
     1201 tttctttgga gactaaatac ggaagaagcg ctgaccaatc ttagctagac tccccttgtc
     1261 tcccatggta atgatgatat tctcatgagg agtcacttct ttcaggatac ctaaaatagc
     1321 ttcaggactt tcttcatcca gctctggata aatatctttc agctcttcat tattgatttt
     1381 gataagggcc ggtctagctt gataagccgc acgtaaagct ggtccactgg tgtccactat
     1441 ggtcagaacc tctgggtatt tttcaataaa ccgctgaata tagtcatccg gcatcccctt
     1501 catcagacta cctgaaaaga ctaggatgtc accagcttgc aggctatttt caatctgctg
     1561 agtgaattgg ttgagcaagt cctctgttag ttcaaaacct ttttcataaa atagtactac
     1621 atcgcctgta ctggtttcaa catagatatt acatgtccga gtattctggc tattttcaac
     1681 cacgcgcagg gcatttccac catcagcatt aagctcctga atatagcgac caatctgccc
     1741 acctaaaatg gtatggatag tgtagtctgt cactccattt tctcgaagtg cataggctac
     1801 gttgaaactt tttccaccag gataatccct cacttccgtc ggtctcaggg gaatattctt
     1861 ttcaatcttt tccacaagaa gcgtgcggtc tagggctgga ttgggacaaa tcaagtgaat
     1921 catggggttc tccttttctt tttatttata ttattatact atatgcaagt aaaaaataaa
     1981 aagataattc ctcgatggag ctatctttta gaccatttaa ttttttatgc aagtacggaa
     2041 attcgttcct gctggtagcc acctttttcc gcaatgtcaa ccaaagccac agcatagtcg
     2101 gcataactaa tatagctttc accttgggca ttgacttgga aaacctcgcc agccaaagtg
     2161 taggcacctg atttttgacc ttctgcatca aaatctgctg ctgggctgat ataggtccag
     2221 ttgaccgctg tcgcctgacg atagaggtct agaccagtac ccatagcctc agcgattggc
     2281 aggtattccg cagggaaatc tggtgtatct ttcagcatag ctgtctggct ctcgtctaaa
     2341 taaagactgc ctgcaccacc aactactaaa agacgagttg gactaccagc aagtatggtc
     2401 gctagatgct cagcaagacg agcgtgatcc ggcaaggttt ctggtgtcca agcaccaaaa
     2461 gcattaacta ctacatcaaa gcctgccaaa tcttctttgg taagagcaaa agcatccttc
     2521 tggattactt cttgggctac gctcttgttt tcagaacgga caatagccgt cacctgatga
     2581 ccacgttcta ctgcttcctt tgcaatagtt tgacctgctt gaccattcgc tgcaataata
     2641 gcaattttca tattgatacc tcacttgttt cgttgtaaca acttcgttta caacgtaagt
     2701 ataaattatt ttggttgtaa cgtcaattgt tacagcttga aaattaaaaa aatcatcaca
     2761 aggatgattc actaactagt cttttagtgc tagggcaaca ctctacagac tacttcaaca
     2821 gtccagtgga gtgtttgaag taggaaatag ggaaacaaag tttctcctta cgttgaccta
     2881 ataaaacgac tatagttccg ccaagagatc agcaagcctt gtcttagcaa gttcattttc
     2941 caaagccgac tgagcatttt ccaaacggct atctagcaga ggatgaatat tgcgacctac
     3001 ttggcaggaa ggattcggtt gctcatgaaa agcgaataat tgaccttttt ctccaaataa
     3061 ctccacagcc tgatagacat gcaaaagtgt aatctggtct ggaccctgtg ccaagcgagc
     3121 acccccaaca ccacgcgcta cttctaccag accagcctcc ttgagttggg acaaaatatt
     3181 tcggataatg acaggattaa ccccgacact gcctgcaatg ctagtactgg tctgtttttc
     3241 tttttctcct tccagagcca agagaaccaa gatatggctg gcagtggtaa atctacttga
     3301 aatttgcatc tcttctcctt tttttcagtc tatcatagac tgaaacagaa ctcaagtttg
     3361 aaaattagtc acggtcacac ccagcaaacg aatccctttt tcaatcttcc caatttcttc
     3421 aattagttga cgaacctctt tctcaatcgt ttccgtttgg tccgtataca cctctagact
     3481 atgacgtttc gtcaaggtag aaaaatcacc ataacgtacc tttaaaacaa ttgttcgccc
     3541 cttttttcca tttcgcttca aactggctgc gacccgttgg cagagactga ttagctcttt
     3601 caggacatcc tcctcccgat aaagaagttt gcgataggtt ctttcctttc caattgactt
     3661 acgaacacgg tccactttaa cgggcgaatt tgaaatcccc ctcgctttcc gataaaggtc
     3721 gaagccaaaa cggccaaatc tatctatcaa aaccatttct ggtacatcta gtaaatcttg
     3781 ccccgtgtag acccccatct catgcaggcg ttccaccgtc ttcttcccca caccgtgaaa
     3841 tttttcaaca ggcagggagg cgagaatacc aacagcatct tcaggtagaa tcaaggtcaa
     3901 accgtacggt ttttccatat cagatgcaat ttttgccaaa aatttattat aggaaacacc
     3961 tgcggaagct gtcagatgca attcattcca aatatcgtat tggataagct tggcaatctt
     4021 aaccgcagag ctgatgccca acttattttc tgttacatcc aagtaagcct catcaataga
     4081 catgggctcc accaaatcag tatagcgatg aaaaatttct cgaacctgtc gcccaacttc
     4141 ctgatatttt tcataattgc cagaaatgaa aatcgcctga ggacaacact cataggcctc
     4201 ttttgaggac atagccgagt gaatcccaaa ggcacgcgcc tcataattac aggtagatac
     4261 cactcctcta ccgccagata gtcttgggtc agccccaatg ataacaggtt tgcccttcaa
     4321 agcgggatta tccctgacct caatggcagc aaaaaaagca tccatatcta catgaataat
     4381 ttttctagat aaatcattga ttaagggaaa aattaacatg actgcctctt cctgtttaca
     4441 agtttgactc gctatattat accgcatttc ttaggaagtt tcagccttta gattcgttga
     4501 accagccatc ttatcaatac aataaacgac agcttatcac cttattacaa atacaagcag
     4561 aaatttattt tgaaaatacc aactctatct ttcaattttt tcatattcct tgaaaggttt
     4621 ttcatttatt ttcaagtatt tttgtcttgt agaaagtgtt ttcaaatggt ataataatga
     4681 catgttggta tcgatagcaa gtcgataccc aaaagcataa aaggagaacc ctcatgtcaa
     4741 caaaagttaa aacaaaaaat gttgctgaag acattttcgc ccaagcctgg gaaggcttta
     4801 aaggtacaga ttggcaagat aaggcaagtg taacacgctt cgttcaagcc aactacactc
     4861 catacgatgg agatgaaagc ttcctcgcag gcccaactga gcgttcactt catatcaaaa
     4921 aaatcatcga agaaacaaaa gctggctacg aagacactcg cttcccaatg gacgtagatc
     4981 gtgctacttc tatcgctgat attccagcag gtttcatcga taaagagaac gaactcatct
     5041 tcggtatcca aaacgatgag ctcttcaaac tcaatttcat gccacgtggt ggtattcgta
     5101 tggctgaaac aactcttatc gaaaacggct atactccaga cccactcctt catgaaatct
     5161 atacaaaaca cgctacaact gtaaatgacg gtatcttccg tgcctacaca gctgacatcc
     5221 gccgttctcg ccactcacac cacgtttctg gtcttccaga tgcatactca cgtggtcgta
     5281 tcatcggtat gtacgctcgt ttggcacttt acggtgcaga ctacttgatg gaagaaaaag
     5341 tagctgactg gaatgcgatt actgaaatcg acgaagaatc aatccgtctt cgcgaagaaa
     5401 tcaacatgca gtaccaagca ttgcaacaag ttgtacgctt aggtgatcac tatggtgttg
     5461 atgttcgcaa acctgcaatg aacactaaag aagctatcca atggacaaac attgctttca
     5521 tggctgtatg tcgtgttatc aacggtgcag caacttctct tggtcgtgtg ccgatcgttc
     5581 ttgacatcta tgcagagcgt gacttagctc gtggtacatt tactgaatct gaaatccaag
     5641 aatttgttga tgacttcgta ttgaaacttc gtacagtgaa attcgctcgt acaaaagcct
     5701 tcgacgaaat ctactctggt gacccaacat tcttgacaac atctatggca ggtatgggta
     5761 acgatggtcg tcaccgtgtt actaagatgg actaccgttt cttgaacaca cttgacaaca
     5821 tcggtaactc tccagaacca aacttgacag ttctttggtc agaccaactt ccatattcat
     5881 tccgtcgcta ctgtatggca atgagccaca aacactcttc tatccaatac gaaggtgtga
     5941 caacaatggc gaaagatggt tatggcgaaa tgtcatgtat ctcttgctgt gtatctccac
     6001 ttgatccaga aagcgaagac caacgccaca acattcagta cttcggtgct cgcgtaaacg
     6061 tccttaaagc tcttctttca agctggaaca acggctacga cgatgttcac aaagattaca
     6121 aagtgttcga tggtgttgaa ccaaatactt ctgaaatctt tgactacgat caagttattg
     6181 ccaactttga aaaagccctt gactggttga ctgacactta tgtagatgca atgaacatta
     6241 tccactacat gactgacaag tacaactatg aagcagttca aatggcattc ttgccaactc
     6301 accttcgtgc aaacatgggc ttcggtatct gtggcttcgc aaatactgtt gactcattgt
     6361 ctgctatcaa gtacgcacaa gtgaaaccaa tccgtgacga agatggcttc atctacgatt
     6421 acgaagtaac tggcgacttc ccacgttatg gtgaggatga cgaccgtgta gatgacatcg
     6481 cgaaatggct catggaagca ttcttctctc gcttgaacaa gcacaaattg tacaagaatg
     6541 ctgaagcaac tgtgtctatc ttgacaatca cttcaaacgt tgcttactct aaacaaacag
     6601 ctaactcacc agttcaccgc ggtgtattcc tcaacgaaga tggttctgtt aacacttcta
     6661 aagtggaatt cttcccacca ggtgccaacc caacttctaa atctcgtggt ggttggttgc
     6721 aaaacttgaa tactctttct aaactcaact tcaaacatgc taacgacggt atctcattga
     6781 caactcaagt ttcaccaaaa gctcttggta aaacattcga tgagcaagtg aacaacttgg
     6841 tgacaatcct tgacggatac ttcgaacaag gtggtcaaca cgtcaacttg aacgttatgg
     6901 acttgaacga cgtttatgac aagattatgg caggtgaaga tgttatcgtt cgtatctctg
     6961 gatactgcgt aaacactaaa tacctcacta aagagcaaaa aactgaattg actcaacgtg
     7021 tcttccacga agttctttca atggacgacc acgctgctga agtttcaggt caagcctaat
     7081 caagcaaaca taaaaggact tgcacatgca ggtccttttt actatgtcga aaaatcttct
     7141 gagtgctacg gaaggatagt tatagtcttt tagtttactt ttagtactag gcaacgagct
     7201 gcggacagct tgtacagtcg agtgactgtg caaggttgga gatagcactt gcggagcaag
     7261 tccccccccc tgcagagtac ggcaaagcga gttcaaatac tccagtggag tgtttgaagt
     7321 tggaaataag gaaacgatgt ttcctcgatc gtcgaagtaa taaaagaaaa actaaatgac
     7381 tgatatatac tcaatgaaaa tcaaaagtag cctaagaaac gaagtcgaag atacaactgg
     7441 agttcatcaa ggcaagttga caatggataa ttttgatttt cgaagagtat tagtcaatag
     7501 cctcttcttc ctccagaact tgccgtatca gagccataac ctggtttcta tccaacttcc
     7561 actgggcgcg ctcatccttg tcaaaagtac gattcgagag aaaaatcgca gctttctgca
     7621 agggacggtt atacatgata aaggtccccg tatagcctgt gtgcgacaac cagtccccct
     7681 tcttatccca agccagagac cgcttgcgct tatcatcaaa accgtaatcc tgcgttaaat
     7741 tcgccgcaaa atcctcagtt agatagcgct ccaaaaagat ttccagatcc ttaacggtcg
     7801 aaaagagacc tgcacttccc gcgtggaggc caaggacacg cgccttaggg tcatgtacca
     7861 gacccgcttt cacgccacgc accgtcggta ccgcctgact gactggtcca aaggaggttt
     7921 gggacatgcc aaagggctct agaacgtctc gactaatcag ctggtccaga cggtctccac
     7981 ctatttcctc caataagaag cccagcaaga gaaaattaat gtctgtgtag aggaaatctt
     8041 tcttatccgt tacggtaatc ttcaaaatcg cttccttaag ctggtcggca tccagactat
     8101 cccgattggg aataaaggga tcaataccac tagtatgggt caataattgc cgaatggtga
     8161 cctgactatc cacaaaagca ggataataag actgcaaggt cctatctagc tccaaagctc
     8221 cgctattaac cagaaaagtc gcaagagtcc ccacaccaac caccttggaa acagacgcca
     8281 aatcataggt caaacccgcc tcaactggcg tatgcccatc ctgggtccct agatagtact
     8341 cctgccactg tccctcagaa aaaagagcca gactggcacc aggataaact ccttgcccaa
     8401 tctgctctga aatcttgtct aaaattgctt gtctcatttt tcgaaccaca attcaatacc
     8461 acttggatca accgtttgaa taaagcttgc ttttttatct ttaaagaatg gtccttccaa
     8521 ctggctttcc aaatgcgccc aatcaaagtc ctgctcgacg ggaaaacgca atccttctaa
     8581 atcccaaact tgttctgcag gagttaataa atcctcacct tctgctccaa caaaacgcaa
     8641 aaaggcttgt tgaggtagga tagcctcata atagtcttgg ctgatactag cctgtggggt
     8701 attaatccaa atagactcta ctgtaaaagc ggtcagacca gaaaagtcat cctgcatctt
     8761 aaatggaaca ggcggaagga ttgcttttag gtcatcaaca gatgcttctg catgtaaaag
     8821 gaaggtgtct ccttctggcg acacagcttc aaaaccatag ccattttttc cttggtagag
     8881 cttactatac tgtgaccctt gcgccagtaa agcttcaatt tcagaggcat tgtctacttt
     8941 tatcacaatt ttattcaatt ttttaagccc ttcgacagca cgggtgcgat taccaggaga
     9001 ttctgtcaaa acgagcttcg tttctgggct tgttctatct ccaaaatcag caaaagaacc
     9061 atcttctagc ttggttttca ttcctagatt tttttctaaa aatccttgat taatagccct
     9121 attattaata cgtaaaacag ggactatagc ttcatttttt ctcaacacga tacatttcac
     9181 tcctcagtca ttctacaata ttgtataaaa aatttcgtca ttttacaact aattg
//
LOCUS       DASGBY010000075         9167 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.075, whole genome shotgun sequence.
ACCESSION   DASGBY010000075 DASGBY010000000
VERSION     DASGBY010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9167
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.075"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(51..884)
                     /locus_tag="U1396_001346"
     CDS             complement(51..884)
                     /locus_tag="U1396_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5342533.1"
                     /translation="MSQQKLIGYHPGTGFIHSLSAVSKLLFFLIVSILAMITYDTRLI
                     LFIAVFSLALFKMSGIRYKEISLVLILTIIFAAMNALMVHLFAPRYGVELYGADTPLL
                     SGLGVYSLTSQQAFYLVNLLLKYFCTVPLAIIFLMTTHPSQFASSLNQIGVSYKVAYA
                     VSLTMRYIPDIQEEFYTIRMSQEARGLELSKKGKLMDRIKGNLSLVIPLIFSSLERID
                     TISTAMELRRFGKNKKRTWYTQQPLQRIDYAVLLFILALVVVTIYLFFINQGRFYNPW
                     R"
     gene            complement(881..2554)
                     /locus_tag="U1396_001347"
     CDS             complement(881..2554)
                     /locus_tag="U1396_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342534.1"
                     /translation="MKKIIEFKDFTFKYQAQQEPTLKDIQLTIYQGEKVLIIGPSGSG
                     KSTIGQCLNGIIPNIYKGEHSGSLLLDGQEAFNLSVYDKSLLVSTVLQDTDGQFIGLS
                     VAEDLAFALENDMESQVVMKQKVGDWAERLSLTDLLAHRPQDLSGGQKQRVSLGGVLI
                     DESPILLFDEPLANLDPKSGQDTIDLIDRLHKQEGTTTIIIEHRLEDVLYRQVDRVVL
                     INDGRILFNGGLDDLLRTSLLQENGIREPLYLSTLRALGYPIAQAEHLSSVWEIDIEA
                     LNIASLPTLHFENGEKESLLEVKHLHFSYPNKQVLTDIQLTIHKGERLAIVGKNGAGK
                     STLAKVLCGFIQGEGEILWKGQSIKEDSVKERAERIGYVLQNPNQMISQTMIFDEVAL
                     GLRVRGVTEEEIEHRVHHILKVCGLYPFRNWPISALSYGQKKRVTIASILVLNPEIIL
                     LDEPTAGQDQRHYREMMEFLDQLNAQGHTIVMITHDMQLMLDYSDRAVVVVDGQIIED
                     ASPAEILSDDMVIERANLKETSIFHLAERLGVNPLELTTFYMQEERRGR"
     gene            complement(2661..2984)
                     /locus_tag="U1396_001348"
     CDS             complement(2661..2984)
                     /locus_tag="U1396_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HEM5342535.1"
                     /translation="MAGRFYEAIGFAVATFGDIKSVTLPEGGNLILMQADSFAQRVPF
                     QVVASGNEVLISLNVASRKEVDTLIERVEANSGQITGCPTDARGFYGASFTDLDGHHF
                     NVIVM"
     gene            complement(3241..4224)
                     /locus_tag="U1396_001349"
     CDS             complement(3241..4224)
                     /locus_tag="U1396_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HEM5342536.1"
                     /translation="MSKDIRVLLYYKYVPIENAKEYAAEHLAFCKSIGLKGRILIADE
                     GINGTVSGDYETTQKYMDYVHANPLFSDLWFKIDEENEQAFKKMFVRYKKEIVHLGLE
                     DNDFDNDIDPLVTTGAYLSPKEFKEALLDEDTVVLDTRNDYEYDLGHFRGAIRPDIRN
                     FRELPQWVRDNKEKFMDKRVVVYCTGGVRCEKFSGWMVREGYKDVGQLHGGIATYGKD
                     PEVRGELWDGKMYVFDERIAVDVNHVNPVVVGKDWFDGTPCERYVNCGNPFCNRRILT
                     SEENEHKYVRGCSAECRAHERNRYISENGLTRQEWAERLEAIGETLTPANA"
     gene            complement(4435..5355)
                     /locus_tag="U1396_001350"
     CDS             complement(4435..5355)
                     /locus_tag="U1396_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342537.1"
                     /translation="MVWTEEKLRPIIHSILNPDEEVLSLYQSKTTKSIYGCILWNSYY
                     YKVFRVSNHPSQSTYKQPTFYDFHGEFYMKGAIRTYLYHTNSWYELSKQSYYLLLFFQ
                     KLWDEKQEVEASWQNGRMQIRLVVEEEGWQVHYRFPDNQAREVERLLASGMLVAIRSS
                     RNFIKIRTSRFVAPYIALIKQRQLYRKKPSKAMLQWEKYQSQLIEIQRTYRLVEENAP
                     KTFFGHWLNKVQLYLCSAIASYWEEVIKGVEWQEAREIKDQRKIEKPHNPIEDKWKEN
                     IARRHKRKVDQLIGHDTLEKLRQLKTELDD"
     gene            complement(5463..6008)
                     /locus_tag="U1396_001351"
     CDS             complement(5463..6008)
                     /locus_tag="U1396_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type riboflavin transporter
                     substrate-binding protein"
                     /protein_id="HEM5342538.1"
                     /translation="MKNNSIKTVVATGIGAALFVVIGHLINIPTFVPNTSIQLQYAVQ
                     SLLAVVFGPVVGFLVGFIGHTLKDSLTYGPWWSWILASGVFGLVVGLTKKRLRIQEGI
                     FEGKDILFFNLVQIAANVLAWGVIAPVLDILIYSEAANKVFAQGLVAGIANSITVAIA
                     GTLLLAVYAKSQTKTGSLSKD"
     gene            complement(6029..6877)
                     /locus_tag="U1396_001352"
     CDS             complement(6029..6877)
                     /locus_tag="U1396_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HEM5342539.1"
                     /translation="MSNNLLVLQSDFGLVDGAVSAMIGVALQESRDLVVHHLTHDITP
                     YNIFEGSYRLFQTVEYWPEGTTFVSVVDPGVGSKRKSVVALTEQNHYIVTPDNGTLSF
                     IKKYVGIKAVREISEVANRRANTEHSYTFHGRDVYAYTGAKLASGHISFEEVGPELSV
                     DKIVEIPTVPTEVGSDYVKGAIDILDVRFGSLWTSITREEFYTLQPQFEDRFEVTIYN
                     NDMLVYQNQVTYGKSFADVRIGQPLIYINSLYRVGVAINQGSFAKAYNVGVGQNWHIE
                     IKRISN"
     gene            complement(7309..8025)
                     /locus_tag="U1396_001353"
     CDS             complement(7309..8025)
                     /locus_tag="U1396_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5342540.1"
                     /translation="MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPETN
                     SALKFVIDRAKQAQVPKHIIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSN
                     VNRTAANVRSAFGKNGGNMGASGSVSFMFDKKGVVVFAGDDADAIFELLLEADVEVDD
                     VEAEDGTITVYTAPTDLHKAIVALKESGIQEFNVTELEMIPQSEVSLEGDDLATFEKL
                     YDALEDDEDVQKIYTNVDGF"
     gene            8186..8497
                     /locus_tag="U1396_001354"
     CDS             8186..8497
                     /locus_tag="U1396_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000827864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5342541.1"
                     /translation="MKRNKHLPLTETTYYILLALLEPAHGYHIMQKVEDMSDGDVKIA
                     AGTMYGAIENLLKLKWICSVPSSDKRRKVYQVTATGQEIIKLETQRIQKLHHIAKELG
                     F"
     gene            8508..9134
                     /locus_tag="U1396_001355"
     CDS             8508..9134
                     /locus_tag="U1396_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM5342542.1"
                     /translation="MIRHKLFTSLQEEEHWINSIQSEGYQLVKVTPWTAAYHFEKCSR
                     TPHPVRLDFHEHIAKGEYSNYLSLFEDCGWQPIQGSRRCGIHYFQQTIEASSTEIFSD
                     TESKKAFYSRYQNYAYSYFGLFLTLFFIHYQVGLQNGYTLWNPKSWYLTPELWERTGT
                     SFWFGFLFETPFALFRSGIIPLFFLAWSIYFLHIAEKGKKEAKKLEKY"
BASE COUNT         2782 a         2044 c         1630 g         2711 t
ORIGIN      
        1 tttcctatat gtcaacgata aagggttgat aagcccaata aactcaataa tcatcgccac
       61 ggattataga atcgaccctg attaataaaa aatagataga ttgtcacgac tactagagca
      121 agaataaata gcaagacagc gtaatctatt ctttgtagag gctgttgggt ataccatgtt
      181 ctttttttat tttttccaaa acgccgcaat tccatagccg ttgaaatcgt atcaatcctc
      241 tccaaggagc tgaaaatcag aggaatgaca agggatagat tcccttttat acgatccatc
      301 aattttcctt tcttggacaa ttccaaacca cgcgcttctt gagacattcg aatcgtataa
      361 aactcttctt gaatatctgg aatataacgc atggtcaaac tgactgcgta agcaactttg
      421 taggataccc caatttgatt caagctggaa gcaaactgac taggatgagt ggtcatgaga
      481 aagataatcg ctaaaggaac tgtacaaaaa tacttcaaga gaagattcac cagataaaat
      541 gcttgctgac tcgtcaagga ataaactccc agacctgata gcaagggagt gtctgctccg
      601 taaagttcca ctccataccg tggtgcaaac aagtgaacca tcagggcatt cattgcagca
      661 aaaatgattg tcagaattaa aacaagagag atttctttat aacgaatccc tgacattttg
      721 aacaaggcta gagaaaatac tgcgataaaa agaatcaagc gggtatcata agtaatcata
      781 gcaagaatgg aaactatgag aaaaaagagt aatttactga cagccgataa actatgaata
      841 aagccagttc ctggatggta accaattagt ttttgttgac tcatcttcct ctcctttctt
      901 cctgcatata aaacgtcgtt aattccaagg gattaactcc caacctctcc gccaagtgaa
      961 aaattgatgt ttcttttaaa ttggctcgct caatcaccat atcatcagat aaaatttctg
     1021 ctggactggc atcttcaata atctgcccat ccaccacaac aacagctcta tctgaataat
     1081 ctagcatgag ttgcatgtca tgggtaatca tgacaatggt gtgcccttga gcatttaatt
     1141 ggtccaaaaa ctccatcatt tcccgataat gccgttgatc ttgtcctgct gttggctcat
     1201 ctagcaaaat aatttctgga ttgagaacca agatagatgc tatcgttacc cgttttttct
     1261 gcccatagga aagtgccgaa atcggccaat tacgaaacgg atacaggcca catactttca
     1321 agatatggtg aactcggtgt tcgatttctt cttctgtcac ccctcgcacg cgcaaaccaa
     1381 gagcaacctc atcaaagatc atcgtttggc taatcatttg gttgggattc tgaagaacat
     1441 aaccaatccg ttctgctcgc tctttgacag aatcttcttt gattgactgc cccttccaga
     1501 gaatctcacc ctcaccctga ataaaaccac aaagcacctt ggctaaagta gatttcccag
     1561 caccattttt tccaacaata gctagacgct ctcccttatg aatcgtcagt tgaatatctg
     1621 taagaacttg tttgttagga taggaaaaat gaagatgctt gacttctaac aaagactctt
     1681 tctctccatt ttcaaagtgt agagtcggta gagatgctat attcaaagcc tcaatatcaa
     1741 tttcccaaac tgaggagagg tgttctgcct gcgcaatcgg atatcctaag gcgcgaagag
     1801 tcgatagata taagggttca cggatgccgt tttcctgtaa caatgaggta cgtaataaat
     1861 catccagtcc tccattgaac aaaatccgac catcattaat caatacaact cggtccacct
     1921 gacgatacag tacgtcctct aaacggtgtt cgataataat ggttgtggtc ccttcttgct
     1981 tgtgcagacg gtcaatcaaa tcaatcgtat cttggcctga tttggggtct aaattagcaa
     2041 gtggctcatc aaacaacaaa ataggactct catcaataag aactccgccc agactgacac
     2101 gttgcttttg acctccagat aaatcttgtg gtcgatgtgc cagcaaatcg gtcaaagaca
     2161 gtctttctgc ccaatctcct actttttgct tcatcaccac ctggctttcc atgtcgtttt
     2221 ccaaagcaaa agctaggtcc tcggcaactg ataagccaat gaattgacca tctgtatctt
     2281 gaagaaccgt tgatacgagc aaggacttat cataaactga aagattaaaa gcttcctgac
     2341 catccaatag taaacttccg ctatgttccc ccttgtaaat attgggaata ataccattaa
     2401 gacattgtcc aatcgtcgac tttcctgaac cagatgggcc aataatcaga actttctctc
     2461 cctgataaat cgttaactga atatctttta aagtgggttc ctgttgcgct tggtatttaa
     2521 atgtaaaatc tttaaattca atgatttttt tcataggact attatagcgt aaattgactc
     2581 tgaaaaaaag gaagaatcat cagtttctcc cttttcaaat aacttcatct atgattctag
     2641 agtagatgaa ttctaacttc ctacatcaca atcacattaa aatgatgccc atcaaggtcc
     2701 gtaaaacttg ctccataaaa gccacgggca tctgtcgggc atcctgtaat ttgcccgcta
     2761 tttgcttcaa cacgctctat aagtgtatcc acttctttcc tactcgccac attaagcgaa
     2821 atcaagactt cattgccact cgctactacc tgaaatggta cgcgttgagc aaagctatct
     2881 gcctgcatca aaatcaagtt gccaccctca ggcaaagtca cagacttaat atctccaaac
     2941 gtcgcaactg caaaaccgat tgcttcataa aaccgaccag ctattcaagg tctgccactg
     3001 ctaatactca atgaaaatca aaagtaacct aggaaacgaa gcgaagatag aactgaagtt
     3061 catcaaggca agctgacaac ggataatgtt gattttcgaa agggataagt tcatccaaaa
     3121 tgacttcatc tccttctctt ttccaattga taggcttcgt atagaatgga ctgaaaaaat
     3181 ataaagaatt ctgattgcac aaaaaaattg cactgatttt tcaatgcaat tttggtatta
     3241 ctaagcattt gctggagtaa gagtttcccc aatcgcttcc aagcgttctg cccattcttg
     3301 acgagtcaag ccgttttcag agatgtatcg gttgcgctca tgagcacggc attcagctga
     3361 acagccacga acatacttgt gctcattctc ttctgatgtc aaaatgcgac ggttacagaa
     3421 tggattgcca cagttgacat agcgctcaca tggtgtgcca tcgaaccagt ccttaccaac
     3481 gacaacaggg ttaacatggt taacatcgac cgcgatacgc tcgtcaaaga catacatctt
     3541 cccatcccac aattcgccac gaacttctgg gtctttacca taggttgcga taccaccgtg
     3601 gagctggccg acatccttgt agccttcacg aaccatccag cctgagaatt tttcacagcg
     3661 aacaccacca gtacagtaaa caactacgcg cttgtccatg aatttctctt tgttatcacg
     3721 gacccattgt ggcaactcac ggaagttgcg gatgtctgga cggatcgcac cacggaagtg
     3781 accaaggtca tactcgtagt cattacgtgt atccaaaaca actgtatctt cgtccaagag
     3841 agcttctttg aactcttttg gtgataggta ggcacctgtt gtcacgagtg gatcaatatc
     3901 gttgtcaaag tcgttgtctt ccaaaccaag gtgaacaatt tcttttttat aacgaacaaa
     3961 cattttcttg aaagcttgct cattttcttc atcaatctta aaccacaaat cgctgaacaa
     4021 tgggtttgca tgaacgtagt ccatgtactt ttgagttgtt tcatagtcac cagaaacagt
     4081 accgttgatt ccctcatcag caatcaaaat acgtcctttg agtccgatag acttacagaa
     4141 agctagatgc tcagcagcat attctttggc attttcaatt ggaacatact tgtaatagag
     4201 tagaacgcga atatcttttg acatagtgtc tccttttcaa tctttgcaat agatgataaa
     4261 actctgtcat ttctaataaa tgatacctta cgattatatc gtttagcccc tcaaaagaca
     4321 aaaatctgaa ctgaaaattt agaacctgta ttcgcgggtt caatgcttat atgtaaaaaa
     4381 tacggtaaca tggatggcat gctaccgcat ttattgaagg ttcgctataa cttcttagtc
     4441 gtctaattct gttttcagtt gtcggagttt ttccaaggta tcatgtccaa tcagttggtc
     4501 cacttttcgc ttatggcgtc tagcaatatt ttccttccat ttatcttcaa taggattatg
     4561 tggcttctcg attttccttt gatctttgat ttctcttgcc tcctgccatt ccactccttt
     4621 aataacttct tcccaatagc tggcaatggc agagcagaga tagagttgga ccttattcaa
     4681 ccagtgtcca aaaaaagttt tcggagcatt ttcctccact agccgatagg tcctttggat
     4741 ttcaataagt tgactttggt atttttccca ctggagcata gctttactcg gcttttttcg
     4801 ataaagttga cgctgtttga ttagagctat atacggtgca acaaaacggc tcgtccgtat
     4861 cttgataaaa tttctggagg agcgaatggc caccagcatg cctgaggcca ataagcgttc
     4921 aacctccctt gcctgattat ctggaaaacg gtaatggact tgccacccct cttcttcaac
     4981 cactaagcga atctgcattc taccattttg ccaactcgcc tccacctctt gcttttcatc
     5041 ccataacttt tgaaaaaaga gaagaaggta gtagctttgt ttactaagtt cataccaact
     5101 gttcgtgtga taaaggtagg tccgaatcgc tcctttcata taaaattcgc catggaaatc
     5161 ataaaaagtt ggctgtttat atgtagattg tgatgggtgg ttactaactc ggaaaacctt
     5221 ataataataa ctattccaaa gaatgcagcc ataaattgat ttcgtcgttt tcgattgata
     5281 aagacttaaa acttcctcgt caggattgag tatagaatga ataatcggtc tcaacttttc
     5341 ttctgtccag accatacttc tccccttgaa cacatgtttt tgtttgtttt atattattat
     5401 atcatatatg tattttttgg tattgaaaaa aacctagaat tttttctagg gaaaataaaa
     5461 acttaatctt tagacaaact acctgtcttc gtttgagatt ttgcataaac agccaaaagg
     5521 agtgtccctg caatagcaac tgtaatactg tttgcaatac ctgccacaag tccctgtgca
     5581 aaaaccttat tcgccgcctc actgtagata agaatatcta aaactggggc aatgactccc
     5641 caagcaagca cattcgccgc aatctgaaca aggttaaaga aaagaatatc tttcccttca
     5701 aaaatccctt cttgaatacg tagacgtttt ttggtaagac caacaaccaa accaaagacc
     5761 cctgatgcca aaatccatga ccaccatgga ccgtaagtca acgaatcctt aagcgtgtgc
     5821 ccaatgaaac cgaccaagaa gccaactaca ggaccaaata caactgccaa tagcgattga
     5881 acagcgtatt gaagctggat agaagtattt gggacaaagg ttggaatatt gattaaatga
     5941 ccaataacca caaagagggc tgcgccgata ccagtagcaa cgactgtttt gattgaatta
     6001 tttttcataa ctatctccta aaatttcttt aattactaat acgtttgatt tcaatatgcc
     6061 agttttgacc tacaccgaca ttataagcct tggcaaatga gccctgatta atcgcaacac
     6121 ctacacgata gagggaattg atataaatca atggctgtcc gatacgtaca tccgcaaagg
     6181 acttcccgta ggttacttgg ttttgataca caagcatgtc gttattgtat atggtcactt
     6241 caaagcgatc ttcaaactgc ggttgcaagg tgtaaaattc ttccctcgta atcgaggtcc
     6301 aaagcgagcc gaatcgaaca tccagaatat caattgcacc ttttacatag tccgaaccaa
     6361 cttccgttgg gactgttgga atttccacaa tcttatccac gcttaattct ggaccaactt
     6421 cttcaaagct aatgtgtcca gaagccaatt tagctcccgt ataggcataa acatctcgac
     6481 catggaaggt gtacgaatgt tctgtattgg cacggcgatt ggccacctct gaaatttctc
     6541 gaaccgcctt tatccccaca tattttttga tgaaggatag cgtcccatta tctggcgtta
     6601 caatgtagtg attttgttcg gtcaaagcta ctacactctt acgttttgaa ccaactcccg
     6661 gatcaacaac cgaaacaaat gttgttccct ccggccagta ttcgaccgtt tgaaagaggc
     6721 gatatgaacc ctcaaagata ttgtacggag taatatcatg agttagatgg tgaacaacta
     6781 aatctctcga ttcttggaga gcaacaccaa tcatcgctga aactgcacca tcaactaaac
     6841 caaaatctga ttgtaaaaca agtaaattat ttgacataca ttctcctaat cttattaccg
     6901 ttctatgata acagaaaacc tgtgaccatt caaatagata tttccaaagc ctggctatag
     6961 tttttcctta tacctcatct atcaagcact ctactatcag ccaccgaaaa ctcgcaaatt
     7021 tttccatcgt accttcttcg aacttaagct aaaatatccc cacttctcta gttccaacaa
     7081 ctatcgtctt tgagtaattg gatataaaga aaaccgccta gcgcagttcc aatttccaaa
     7141 cttttaagcc aaaaattgtc cttgtggaca gctgaaaata aagaaaacca gctaccgctg
     7201 gttctcattt ccaaccttcg acgtcccacg tacaatgaga atcatctacc gacgatttca
     7261 atttccagcc ttttagtata aaaaaagtgc taccagcact tttttatact aaaacccatc
     7321 cacattcgtg tagatttttt ggacgtcttc gtcgtcttct agggcatcgt agagtttttc
     7381 aaatgttgcg aggtcatcgc cttcaagtga tacttctgat tgtggaatca tttcaagttc
     7441 agtgacgttg aactcttgga ttcctgattc tttaagtgcc acgattgcct tgtgcaaatc
     7501 agttggggct gtatagacag tgattgtgcc gtcttctgct tctacgtcat ccacttcgac
     7561 atctgcttca aggagcaatt cgaagatggc gtctgcatca tcacctgcaa agacaaccac
     7621 acctttttta tcaaacatga atgatacaga accagatgcc cccatgttac cgccgttttt
     7681 accaaaagca gagcgcacgt tagctgccgt acggtttacg tttgatgtca aagtatcaac
     7741 gataatcata gaaccatttg gtccaaagcc ttcgtaacga ccttccacga aggtttcgtc
     7801 tgtgtttcct tttgccttgt caatggcctt gtcaatgatg tgttttggaa cctgcgcttg
     7861 cttagcacgg tcgataacaa atttcagcgc tgagtttgtt tctggatctg ggtcaccctt
     7921 tttcgctgct acatagattt caacaccaaa tttggcgtaa acttttgagt tagcaccgtc
     7981 ttttgcggtt ttcttggcta caatattggc ccatttacgt cccatgggga acctcctaca
     8041 ttttataaaa tcgctttatt ataccataaa tggcaaggat tgagaagatt tttaaaatct
     8101 tcttcactat acagttgaca tgtatagttt ctcgatatat aatatatagt acaactatac
     8161 atttgaacta tataggagaa gccaaatgaa aaggaacaag catctcccct taacggagac
     8221 aacctactat attctattag ctctcttgga acctgcccat ggctaccata tcatgcaaaa
     8281 agtagaggat atgagtgatg gtgatgtgaa aatcgctgca ggaaccatgt atggagcgat
     8341 tgagaatctt ttgaaactaa aatggatttg ttccgttcca agttccgata aaagaagaaa
     8401 agtctatcaa gtaacagcaa cgggccaaga gattattaaa ctggaaacac agcgtattca
     8461 aaaactacat catattgcca aagaattagg tttttaagga ggaagccatg ataagacaca
     8521 aattattcac cagtttacaa gaggaagaac attggattaa ttcgattcaa tccgaaggtt
     8581 atcagcttgt caaagtaact ccgtggacag cagcctatca ttttgaaaaa tgtagtcgaa
     8641 cccctcatcc cgtacgcctt gattttcatg aacatattgc aaaaggagaa tattcaaatt
     8701 acctctctct atttgaagac tgtggttggc aacctataca aggtagtcgt agatgtggca
     8761 tccattattt tcagcaaaca atcgaagctt caagcactga aattttttct gataccgaat
     8821 cgaaaaaagc attctattca cgctaccaaa attatgccta ctcctatttc ggattatttc
     8881 tgactttatt ttttatccat taccaagttg gactccaaaa tggatacaca ctttggaatc
     8941 ctaaatcctg gtacctaact ccagaactat gggaacgaac tggtaccagt ttttggtttg
     9001 gttttctctt tgaaacccca ttcgcattgt ttagaagtgg cattattccc ttatttttcc
     9061 ttgcttggtc tatttatttc ctccatatcg ctgaaaaagg taaaaaagaa gcgaagaaat
     9121 tagaaaaata ctgatggcat actatccaaa agaaaaagat tgaaaag
//
LOCUS       DASGBY010000076         9127 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.076, whole genome shotgun sequence.
ACCESSION   DASGBY010000076 DASGBY010000000
VERSION     DASGBY010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9127
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.076"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(46..3129)
                     /locus_tag="U1396_001356"
     CDS             complement(46..3129)
                     /locus_tag="U1396_001356"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922092.1"
                     /note="This family includes IgM or IgG-cleaving cysteine
                     proteases; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IdeS/Mac family cysteine endopeptidase"
                     /protein_id="HEM5342543.1"
                     /translation="MNIQERFSLRKSAVGLVSVSLLCAIYTSTVAADTVVTGVNEIIE
                     ESQVKDEVSIESEKNESLDGSNIEIVEEIADNIPSPVIAEGEVAVEMKVDRGTENVVS
                     RNDTEVTTSEQNQIEVTETKEILNQTSYQTESGEQRQIIWAHGITPPAMEQSGGFVKE
                     KYGDYLNYTAPFKAGKGYYDTNKSLNASFIDLNLCFAAVSSNMVHWWLEQNSSYVERY
                     LKEKKGTVNVGENYAITDLRRYIDSFQDQQNSRVFDMFKTYYGYRTNGFVSDALVDLF
                     INGYKPKVQGGVNLEDSQLVPDSRGGFFYDVFKEKKLTNRIFSGSYERFGEDVRTVLE
                     SKGLLGLTYRTLGYATHIVTVWGAEYDNQGKIRAVYITDSDDQQEQIGLKRMGITRDA
                     SGNPRLNNHVKNNSAGALLDYVHTIRLGQDLWEEYFNPFAKAKEIASQILADRKKALV
                     LSIQGQSELPESMRLIYLEKLNNLYNQGILSIQKTESSEMLSGALENGLNSLKSLDFP
                     ISEVGNALAPDLSVGDRSTVSDVDSLSSQETSSTNLEADTENAGIIADGTNQLHFPVE
                     AQTTSSVEAEGDNVFEQEADTLPIIIENKDEFGSELSGNMQTSETDSLVVAVEEDVKN
                     DEVDQVEKLLESEKVENQSSELLSDTLIVEGANDKEEDRVEAVVSEQPDSIPHQNVEI
                     SPVEPMNVETESVVTPINDAATPHGFPMYIDNSVTESVATPLEKDSIQAGETEIAEPT
                     SSESTSVEAELVDNSEIHSATSSVTPRGSSAYADSSTTESVATLLEKDSIQAGETEIA
                     EPTSSKSTNVEAASVDNSEIHADTSLTAVSSVNLDNPVIEPVAIPLIGSKRDTNAEVE
                     VSSLSKREVRKPNTEGLISVQSKVIKKELLESSLVEAGSPLLEATIAQSSNSNSTEIG
                     MSYQNTVLLESNNTERQVSKAEIVIEHKETELVETVSSASEPVVLVENISQTSNNTIE
                     SGKNMGVQSQAGAKQILGIEQSSKVSTPTSRQIMGVGLLTLVLGSALGLLKKRRK"
     gene            complement(3290..4795)
                     /gene="pyk"
                     /locus_tag="U1396_001357"
     CDS             complement(3290..4795)
                     /gene="pyk"
                     /locus_tag="U1396_001357"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEM5342544.1"
                     /translation="MNKRVKIVATLGPAVEIRGGKKFGDDGYWGEKLDVESSAQKIAA
                     LITEGANVFRFNFSHGDHQEQGDRMATVRRAEEIAGKKVGFLLDTKGPEIRTELFEDD
                     AKEYAYTTGDKLRVATKQGIKSTKEVIALNVAGGLDVFDDVEVGKQILVDDGKLGLTV
                     VEKDAVNREFVVLVENDGVIAKQKGVNIPYTKIPFPALAERDNADIRFGLEQGLNFIA
                     ISFVRTAKDVEVVRNICKETGNDHVQLFAKIENQQGIDNIDEIIEAADGIMIARGDMG
                     IEVPFEMVPVYQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGT
                     DATMLSGESANGKYPVESVRTMATIAKNAQTLLNEYGRLNSDQFNRASKTEVIASAVK
                     DACHSMDIKLVVTVTETGYSARSISKYRPDADILAVTFTEKVQKSLMLNWGVIPIVTN
                     RPDSTDDMFDLAERIAKEQGLVEAGDDIIIVAGVPVGVAGSTNTMRVRTVK"
     gene            complement(4862..5872)
                     /gene="pfkA"
                     /locus_tag="U1396_001358"
     CDS             complement(4862..5872)
                     /gene="pfkA"
                     /locus_tag="U1396_001358"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEM5342545.1"
                     /translation="MKRIAVLTSGGDAPGMNAAIRAVVRQAISEGMEVYGINEGYAGM
                     VAGDIHELSARSVGDIISRGGTFLGSARYPEFAKLEGQLKGIEQLKKHGIEGVVVIGG
                     DGSYHGAMRLTEHGFPAIGVPGTIDNDIVGTDFTIGFDTAVTTAMDAIDKIRDTSSSH
                     RRTFVIEVMGRHAGDIALWAGIASGADVIVVPEEDFNINDIVDRIKAGYDNGKKHSII
                     VLAEGVMPAAQFAEELKAAGDTSDLRVTELGHIQRGGSPTARDRVLASRMGAHAVKLL
                     KEGRGGLAVGIRNEQMVENPILGTAEEGALFSLTTDGKIVVNNPHKADLELADLNRNL
                     SI"
     gene            complement(5957..9067)
                     /locus_tag="U1396_001359"
     CDS             complement(5957..9067)
                     /locus_tag="U1396_001359"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM5342546.1"
                     /translation="MLAQLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLY
                     AAYSFMESCNKMGLQPIIGCELDWKLQEGEQDVTTQLIALTTRGYRNLLKISTAKMIG
                     QDDFETIRQYLVDIAVVVPYFSGIEHLELGVNYYIGVTVDTPVQDFKQAILPIHTVRF
                     FEEEQLESLQVLHAIRDNIPLNQVVDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDLV
                     AGISYQLNTDLKLPRFNRDRPAVEELYERSYQGLEEKGLTNSLYKERLEKELSIIHQM
                     GFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLN
                     AERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGT
                     PEYELSNITKKISFRDSLTSAYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIH
                     AAGIVMSDEDLTDTIPLKIGDDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEG
                     VRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVA
                     TTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYA
                     GFTLGKADLLRRAMSKKNAQEMQVMEAEFLQGALKNGHAEENAREIFGMVAKFAGYGF
                     NRSHAYAYSALAFQMAYFKSHYTDVFFDVMLNHSSSAYIEDAMQFDFEVARLTINNIP
                     YHDKFDKSKVYLGLKTLKGLPKDLALWILDHRPYKSVEDFILRLPDNFKKKDLLIPLI
                     QIGLFDDFVANRKKIIENLDNLFVFAEAIGTFFAEESYSWTDVEDYSDSEKFMLEQEL
                     LGVGISPHPLVNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLR
                     VTDTKRTLDVTLFPESYRQYASILEEGGMGYITGRVQERDGQLQLVLEKLEPVSLEKF
                     WILLENREHDYAVARILDKYRGSIPVVLHYQDSNQTIQAEHHMVMKTPQLEEELSEFV
                     MKTIFR"
BASE COUNT         2636 a         2069 c         1545 g         2877 t
ORIGIN      
        1 gagttaacga agtaataaaa gaaaaactaa atgacgatac ttcttttact tacgtctttt
       61 ctttaacaaa cctaaagcac taccaagaac aagagtcaat agaccgactc ccataatctg
      121 tcttgaagta ggtgtactta ctttcgaaga ttgttctatg cctaaaattt gttttgcacc
      181 tgcttgagat tgaactccca tattcttacc agattcaata gtattatttg aggtttgtga
      241 gatattttct acgagcacta caggctcaga agcagatgaa accgtttcaa ctaactctgt
      301 ctccttgtgt tctataacaa tttctgcttt agacacctga cgctctgtat tattagactc
      361 taataacaca gtattctgat agctcatacc tatctcagta ctatttgagt ttgaagactg
      421 agcaatggtg gcttctagca atggagaccc tgcttctact aagcttgatt ctagcaattc
      481 tttcttaata acttttgatt gaacagagat tagcccttca gtatttggtt ttctaacctc
      541 tcttttcgat aatgaagaaa cttccacttc tgcattcgtg tccctcttag aaccgataag
      601 ggggatagct actggttcaa tcactggatt atccagattg actgatgaaa cagcagttag
      661 agaggtatct gcatgaattt cagaattgtc gacagatgca gcttcgacat tagttgattt
      721 gctcgaggtt ggttctgcaa tttctgtctc tccagcctga atggagtctt tttcaagcag
      781 agtagctaca gattcagttg tggaactatc tgcatatgcc gaggaaccac ggggagtaac
      841 tgaagaggta gctgaatgga tttcagaatt gtcgacaagt tcagcttcaa cactagttga
      901 ttcgctcgag gttggttctg caatttctgt ctctccggct tgaatggagt ctttttcaag
      961 tggagtagct acagattcag ttacggaatt atctatatac atcgggaaac catgaggagt
     1021 agctgcatca ttaataggag tgaccacaga ttcagtttcg acattcattg gttctacagg
     1081 agagatttct acattttgat gtggtattga gtctggttgt tcagaaacaa ccgcctccac
     1141 tctatcttct tctttgtcat ttgcaccctc tacgattagg gtgtctgaca gaagttccga
     1201 actctgattt tcaacttttt ctgattcaag aagcttttca acttggtcta cctcatcatt
     1261 tttcacatct tcttcaacag ctactactag cgaatccgtt tctgacgttt gcatgtttcc
     1321 tgatagttct gaaccaaatt catccttgtt ttcaataatt attggtaatg tatctgcctc
     1381 ttgttcaaaa acattatctc cctcagcctc tactgaagat gtcgtttggg cctccactgg
     1441 aaaatgcaat tgattggtac catctgcaat aatacctgca ttctctgtgt ctgcttccaa
     1501 atttgtggaa cttgtttctt gagatgatag agaatcaaca tctgaaaccg ttgagcgatc
     1561 acctactgat aaatctggtg ccaaagcatt tccaacttct gaaataggaa aatctaaact
     1621 ctttaaacta tttaaaccat tttccaatgc accacttagc atctcagaac tttctgtctt
     1681 ttgaatagat agaatccctt gattatagag attatttagt ttttcaagat aaatcagccg
     1741 cattgattct ggcaattcag attgtccttg aatagacaga accaacgcct tctttctatc
     1801 agctagtatc tgactagcta tttctttggc ttttgcgaac ggattgaaat attcttccca
     1861 taagtcttga ccaagacgga ttgtatggac ataatccaaa agcgccccag ctgaattatt
     1921 tttcacatga ttattcaaac gcggatttcc agaagcatca cgagtgattc ccatacgctt
     1981 caaaccaatt tgttcttgtt gatcatcgga atcagtgata tagacagccc taatcttacc
     2041 ttgattatcg tactcagcac cccataccgt cacaatatgc gttgcatagc ctaatgttct
     2101 ataagttaga ccgagtaatc ctttgctctc caaaacagtt cgaacatcct caccaaaacg
     2161 ctcatagcta ccactaaaaa tacgatttgt cagttttttc tctttgaaaa cgtcgtagaa
     2221 aaagccaccc ctactatctg gtactaactg gctatcttcc agattgacac caccctgtac
     2281 cttaggttta tatccattaa taaacaagtc aactagggca tctgacacaa aaccatttgt
     2341 acgataaccg tagtaagttt tgaacatatc aaagactcga ctattttgct gatcctggaa
     2401 cgaatcaata tagcgacgta ggtccgttat tgcatagttt tccccaacat ttactgtacc
     2461 ctttttttct ttgagatatc gctcaacata ggaactattc tgttccaacc accaatgtac
     2521 catgttggaa gacacggctg caaaacatag gttaaggtca ataaatgaag cattgagact
     2581 tttattggta tcataatagc cttttcctgc cttaaatggc gctgtatagt ttaaatagtc
     2641 tccatacttt tcctttacaa aaccaccgct ttgttccatt gcaggaggag taattccatg
     2701 ggcccatata atttgtcgtt gctcgccact ctccgtttga taactggtct gattcaaaat
     2761 ttcttttgtc tcagtaacct ctatctgatt ttgctcgctc gtcgtaactt ctgtatcatt
     2821 tctagaaact acattctcgg tccctctgtc aactttcatc tctaccgcta cttccccttc
     2881 agcgataaca ggtgatggga tgttgtctgc tatttcctct acaatttcaa tattagaacc
     2941 atctagggat tcattttttt ctgattcaat agatacctca tccttgactt gtgattcttc
     3001 aattatttca ttcactcctg taacaactgt atcggcagca acagtggatg tataaatagc
     3061 acatagcaaa gagactgaga ccaagccaac cgcggatttt ctcaaagaaa atcgttcttg
     3121 aatgttcatc tttcctccgt ttatatttat attctttgaa caagttattc ttactcttat
     3181 ttatttttta tatcaacatc ccaaaatcat ttagagacaa aaaatctata acagcacgta
     3241 tttaacttat tctctaatta ctacaaaaag gtccaagcgg acctttttat tattttactg
     3301 tacgaacacg catagtgttt gttgaacctg caacacctac aggcacacca gcaacgataa
     3361 taatgtcatc tcctgcttca acaagacctt gctctttggc aatacgttca gccaaatcaa
     3421 acatatcgtc agttgaatct ggacggtttg ttacaattgg aataacaccc cagttaagca
     3481 tcaatgattt ttgtactttc tcagtaaatg ttactgccaa gatgtccgca tctggacggt
     3541 atttagagat cgaacgagct gagtaacctg tttctgtaac tgttacaact agtttgatgt
     3601 ccattgagtg acatgcgtct tttactgcag aagcaataac ttctgtttta gaggcacgat
     3661 taaactgatc agagttcaaa cgaccatatt cattaagaag agtctgtgcg tttttagcga
     3721 tagttgccat tgtacgaact gattctactg gatatttacc gtttgcagac tcacccgaaa
     3781 gcattgttgc gtcagtaccg tcgataactg cgttgaatac gtcagatact tcagaacgag
     3841 ttgcacgtgg tttttcagtc attgtttcca acatgtttgt tgctgtgata actgctttac
     3901 cagctgcatt cactttagtg ataatcattt tttggtaaac tggaaccatt tcgaatggta
     3961 cttcgatacc catgtcacca cgagcaatca tgataccatc tgctgcttcg atgatttcgt
     4021 cgatgttgtc aataccttgt tggttttcga ttttcgcaaa caattgaacg tggtcgttac
     4081 cagtttcttt acagatgtta cgaacaactt ctacgtcttt tgcagtacgt acaaatgaga
     4141 tagcaataaa gttcaaacct tgctcaagac cgaagcggat atctgcatta tcacgctctg
     4201 caagagctgg gaaaggaatt tttgtgtaag ggatgtttac acctttttgt ttagcaatta
     4261 caccgtcgtt ttcaaccaaa acaacaaatt cacggtttac tgcatctttt tcaacaactg
     4321 tcaaaccaag tttaccatcg tcaacaagga tttgcttacc aacttcaaca tcgtcaaaga
     4381 catccaaacc acctgctacg ttcaaggcaa tcacttcttt tgtagatttg ataccttgtt
     4441 ttgtagcaac acgcaatttg tcaccagttg tatatgcata ttcttttgca tcatcttcaa
     4501 acaattctgt acggatttct ggaccttttg tatccaacaa gaaacctact tttttaccag
     4561 cgatttcttc tgcacgacga actgttgcca tacgatcacc ttgctcttgg tggtcaccgt
     4621 gtgagaagtt gaaacggaaa acattggcac cttctgtaat caaagcagca attttctgtg
     4681 ctgatgactc aacatctaat ttttcacccc agtaaccatc gtcaccgaat tttttaccac
     4741 cgcggatttc taccgctgga ccaagggttg caacaatttt aacacgtttg ttcatcttaa
     4801 caaaactcct tttatttcaa tggtcatacg acccttaatt aacactttta aacaacgata
     4861 cctagattga caagttacgg ttcaaatcag ccaactccaa atctgcttta tgcggattat
     4921 taactacaat cttgccatca gtagtcaagc taaacaaggc accttcttct gcagttccaa
     4981 gaattggatt ttcaaccatt tgctcgttac ggatacctac tgcaagacct ccacggcctt
     5041 ctttaagcaa tttaacggca tgagcaccca tacgagaagc gagtacacga tcacgcgctg
     5101 ttggagaacc accacgttgg atatgaccaa gttctgtcac acgaagatca cttgtatcgc
     5161 ctgctgcttt caattcttca gcgaactgtg cagctggcat aacaccttca gccaaaacaa
     5221 tgatgctatg tttcttacca ttgtcgtagc ccgctttaat acggtcaaca atatcgttga
     5281 tattgaagtc ttcttctgga acaacgataa catctgcacc agaagcaata ccagcccaaa
     5341 gagcgatgtc tcctgcatga cgtcccatta cttcaatgac gaaagtacga cggtgacttg
     5401 atgaagtatc gcgaatctta tcaatcgcat ccatggcagt tgttacagct gtgtcaaaac
     5461 cgattgtaaa atctgtcccc acgatgtcgt tgtcaatggt accaggtaca ccaatagctg
     5521 ggaaaccatg ctccgtcaag cgcattgctc cgtggtaaga accgtcacca ccgataacca
     5581 ctacaccttc gataccatgt tttttcaatt gctcaatccc tttaagttgc ccttctaatt
     5641 tggcaaattc tggataacga gctgaaccaa ggaatgttcc tccacgtgaa ataatatcac
     5701 ctacagaacg tgcagacaat tcatggatat cacccgcaac catacctgcg taaccttcgt
     5761 tgattccata aacttccatt ccttctgaaa ttgcttggcg aacaactgca cgaatagcag
     5821 cgttcatacc aggggcatca ccaccactgg tcaaaacagc aatacgtttc attcgttaat
     5881 gctcctttaa cttttcattt taactgccct attataacat acttagccta aacttgcttg
     5941 actttttgct atttttttat cgaaaaatcg ttttcataac aaattcactt aactcttctt
     6001 ctaattgagg cgttttcata accatgtggt gctcagcctg aattgtctgg ttactatctt
     6061 gataatgaag tactactgga atgcttcctc tatatttatc caaaatacga gcaacagcat
     6121 aatcgtgttc tcgattttcc aaaagaatcc aaaatttctc caaactgaca ggctctaatt
     6181 tttctagaac taattgcaac tgtccatcgc gctcttgcac tctacctgtg atgtacccca
     6241 ttcccccttc ttccaaaata gaagcgtatt ggcgataaga ttctgggaaa agagtcacgt
     6301 caagcgtcct cttggtatct gtcactcgaa gaaatgccat ctgctcccca gtctttttgg
     6361 tacgaatcaa tcgaatagct tgaatctgca caagaacggt cgctcgattg ccaaccgcta
     6421 aatcagccaa atctgtaaaa ctacgcttag actctcgaca aatattgact aaaggatgcg
     6481 gactaatacc aacacctagc aattcttgct ctagcataaa tttttcactg tcgctgtaat
     6541 cttctacatc tgtccaacta taactctcct ctgcaaaaaa tgtaccaatc gcctctgcaa
     6601 agacaaagag attgtctaga ttttcaataa tctttttacg attggcgaca aaatcatcaa
     6661 ataaaccaat ctgaataaga gggattagta aatctttttt cttgaaatta tctggcaagc
     6721 gcaaaataaa atcttctaca gacttatagg gacgatgatc caatatccat aaagctaaat
     6781 ctttaggtaa accttttagt gtttttaatc ctaggtagac cttactttta tcaaacttat
     6841 cgtgataagg aatattgtta atcgtgagtc gagctacctc aaagtcaaac tgcatcgcat
     6901 cttcaatata agcactgcta gaatgattga gcatgacatc aaaaaagaca tccgtatagt
     6961 gactcttgaa ataggccatt tgaaaggcta aggctgaata agcataggcg tggctgcggt
     7021 taaaaccata accagcgaac ttagccacca tgccaaatat ttcccttgca ttctcttcag
     7081 catgtccgtt tttcagtgct ccctgtaaaa attccgcttc cattacctgc atttcctggg
     7141 cattcttttt agacatcgcc ctgcggagta aatccgcctt tccaagcgta aatcctgcat
     7201 agacctgtgc aatctgcatg acctgttcct gataaagcat gataccataa gtcggttgta
     7261 aaataggagc aatggttggg tccaacaaat caactgtctc ttgtccatgt ttgcgtttta
     7321 caaagttatc cgaataatca ctagcacccg gtctattcaa actcgttgtt gcaactatat
     7381 cctcaaatcg accaggtttg acccttcgaa gcaggctaat cgcaccaggc tgttcaaatt
     7441 gaaaaattcc cttagtccga ccagcagcaa aaagttccaa ggttttctta tcttctaaat
     7501 ctatcttggc aatatcaatt tcctgctgat aacgttcacg tactccttct gccatttttt
     7561 gcacaaaggt cagatttcgt aagccaagga aatccatctt caacagacca ttcgcctcaa
     7621 cagcatgtgc atcatattgg gttaccagca tgtcatcccc tattttaaga gggatggtat
     7681 ctgtcaaatc ctcatcactc atcactatcc ctgctgcatg gatagaagtc tgtcggggtt
     7741 gcccttcaat ttgttgagca atcgcaaaag ctttttggta ctctatctta ctattgataa
     7801 tctgacgaaa agcggcattt cgctgatagg cagaagtaag actatcccta aatgaaattt
     7861 tcttggtaat attacttaac tcatattcag gtgttccgaa acgcttaaat acatcacgaa
     7921 tggcctgctt agctccaaat gtcgagtagg ttacaatttg cgcagcatgg gttgaaccat
     7981 aacgatctcg tacataacga ataaaatctg ctcgatgaat atctggaata tcaatatcaa
     8041 tatcgggcat tgaataacgt tcagcattga gaaagcgttc aaagagaaga ttatgcttaa
     8101 caggatcaat acctgtgata tttaaggcgt aggcaactag gcttccaaca gctgaaccgc
     8161 gccccattcc catgtagtac ccttggctac gcccaaaacg aagtaggtcc catacaatca
     8221 agaaataatc gtcaaatccc atttgatgaa taatggataa ttccttttcc aatcgttcct
     8281 tatacagtga attagtcaag cccttctctt ctaatccttg ataggagcgc tcgtataatt
     8341 cttccactgc aggtctgtca cgattaaaac gcggcaattt taaatctgta tttaattgat
     8401 aagaaatccc tgcaaccaag tcacgtaaat tatcaactgc ttgcggaaac cgattcgaaa
     8461 atagattggt taaactatca gccgataaaa gcttttgtcg actatctata tctacaactt
     8521 gattaagtgg aatattatct cgaatagcat gtagaacctg tagactttcc aattgttcct
     8581 cttcaaaaaa acgaaccgta tgaattggga gtattgcttg cttaaagtct tgaactggtg
     8641 tatcaaccgt cactccgata taatagttaa cacctaactc aaggtgctca atgccagaaa
     8701 aataaggaac aaccactgct atgtcgacta aatattgacg aatagtttca aaatcatctt
     8761 gccctatcat cttagcagtc gaaattttca atagattgcg ataacctctg gttgtcagag
     8821 caatcaattg agtagttacg tcctgctccc cttcctgtaa tttccagtcc agttcacaac
     8881 caataattgg ttgaagcccc attttgttac aggattccat aaaactatag gctgcataaa
     8941 gactgttttt atccattatc cccaatgcgt gataaccgag ctctttagcc ctgcctacat
     9001 aattttctat cgtcaccatg ctatccataa aggtataaac tgtctttgta tctaattgtg
     9061 ctagcatggc attctccttt tgttgcttct tcttaaatta tatcaaataa tcatcaaaaa
     9121 atatttt
//
LOCUS       DASGBY010000077         8852 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.077, whole genome shotgun sequence.
ACCESSION   DASGBY010000077 DASGBY010000000
VERSION     DASGBY010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8852
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.077"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..249
                     /locus_tag="U1396_001360"
     CDS             <1..249
                     /locus_tag="U1396_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HEM5342547.1"
                     /translation="KQIKNRLKKHMFWIGLISLVLMLVDNVLVCYFNIECSRTLNQIE
                     QTICIILSILVFLGVLNNKPDVKVEDIMKNGMSSKNQK"
     gene            781..1536
                     /locus_tag="U1396_001361"
     CDS             781..1536
                     /locus_tag="U1396_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEM5342548.1"
                     /translation="MIMKRTILLCLPTILLLAACHQKPNQANTKKNSSTVVSTTSSQS
                     ASITSEQSTSSSTSVETDQEVTSTETQVNFNGSYYSVQGKYGEVIIANKKHPLAADYA
                     PGENPEALVAFQRLIADMQALGFGISNNYSGFRSYETQASLYQSYVNQEGQAAADRYS
                     ARAGYSEHQTGLAFDLLDTSGNLLEEPNASQWLATNAHLYGFIVRYLPGKESSTGYMA
                     ESWHVRYIGQEATDIYNSGLTLEEYFGVPGGDY"
     gene            1625..2068
                     /locus_tag="U1396_001362"
     CDS             1625..2068
                     /locus_tag="U1396_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5342549.1"
                     /translation="MLKAMEVYLVTNGNGLEAIEFYKNALGATVEQVNLFKDFLPDCP
                     AELENYVMNAQFRLNGQRFMLSDNNPEMPYTVGDNITVALITDDAETAQELYSKLSVD
                     ATAINMELQAVPWSPAYGNVTDKFGISWQINAEVEGYGQEYYAEN"
     gene            complement(2096..3706)
                     /locus_tag="U1396_001363"
     CDS             complement(2096..3706)
                     /locus_tag="U1396_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM5342550.1"
                     /translation="MSKSIIWELVKINILYSNPQLLASVKKKQSKRKDASFSAYKSVL
                     LQQVFMVLSFGLLYSVFFMGVDYSQSIGFFSLQLALFTIIAIVYGFTGFFSVFYDSKD
                     TKLYLALPLKPQEVFLAKILSAQGMVLPFLMPCLSLLLITYWQIGGPLLALASIPSFL
                     ILWILANLVNLIIMHFVGEVLTKSPRKTLISTILMTGSSLLAFAALMFLQSQQTVSLE
                     SGGFVDFPIIPIFAGFHYLVSHTISLETLLHFGLPFILMFGLITFAFKTVIPNYFNQV
                     LAIENASTKRTNNAKSAKIPSNLNQALVKHHLSTLKDSNLMVQTMIQPIIMGVALFPS
                     FSRFTENGGLSSVEWDFFGIALLAGFLLGSLFAGSTTFIGVAMSLEKENYHFIRTLPI
                     SFKKFIIQKFWVLAAVQFALPTLLYFALALGFMKVKLILAVFFTVGIIISALLTGQIY
                     YWRDQRLLMLNWQNSNQLFGRGAGQWLIAGLIIGTMFLGAIILVVSIILAGTIGAAYV
                     SSALMTLLFVLSAALQLYIYKAYWQKLK"
     gene            complement(3703..4438)
                     /locus_tag="U1396_001364"
                     /pseudo
     CDS             complement(3703..4438)
                     /locus_tag="U1396_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922278.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            4678..6462
                     /gene="uvrC"
                     /locus_tag="U1396_001365"
     CDS             4678..6462
                     /gene="uvrC"
                     /locus_tag="U1396_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEM5342551.1"
                     /translation="MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSY
                     FRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFI
                     KITKERHPRLLITRQIKKDSGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
                     YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKA
                     AEYRDVLQSISTLRTKQRVMAHDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNL
                     FPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEALVDTKVIKPQRGEKK
                     QLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGT
                     SPVSAMVVFENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLI
                     IIDGGQGQVNVAKQVIEQELGMSIPIAGLQKNDKHQTHELLFGNPLEVVELPRNSQEF
                     FLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSA
                     SLQEIAEAGVPYKVAELVKENLSSKDEI"
     gene            6519..6647
                     /locus_tag="U1396_001366"
     CDS             6519..6647
                     /locus_tag="U1396_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4044 domain-containing protein"
                     /protein_id="HEM5342552.1"
                     /translation="MAFGEEKHKKTTFEKVTLVIVVVMVVATLAGLILPAINALMN"
     gene            6941..8254
                     /gene="obgE"
                     /locus_tag="U1396_001367"
     CDS             6941..8254
                     /gene="obgE"
                     /locus_tag="U1396_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEM5342553.1"
                     /translation="MSMFLDTAKIKVKAGKGGDGMVAFRREKYVPNGGPWGGDGGYGG
                     NVVFVVDEGLRTLMDFRYNRRFKADDGEKGMTKGMHGRGAEDLIVRVPQGTTVRDADT
                     GKIITDLVENGQEFVIAHGGRGGRGNIRFATPKNPAPEISENGEPGEERNLELELKVL
                     ADVGLVGFPSVGKSTLLSVITAAKPKIGAYHFTTIVPNLGMVRTKSGESFAVADLPGL
                     IEGASQGVGLGTQFLRHIERTRVILHVLDMSASEGRDPYEDYVAINNELETYNLRLME
                     RPQIIVANKMDMPEAAENLEEFKKKLAANYDEFEELPQIFPISGIAHQGLKNLLEATA
                     ELLEKTPEFLLYEESDFQEEEAYYGFNPDEPEFDISRADDASWVLSGDKLEKLFTMTN
                     FDRDESVMKFARQLRGMGVDEALRARGAKDGDIVRIGKFEFEFVD"
     gene            8628..8792
                     /locus_tag="U1396_001368"
     CDS             8628..8792
                     /locus_tag="U1396_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342554.1"
                     /translation="MGDKPISFKDKDGNFVSAADVWNAEKLEELFNKLNPNRKLRLER
                     ERLAREQEKE"
BASE COUNT         2698 a         1638 c         2038 g         2478 t
ORIGIN      
        1 aaacaaataa agaatcgttt gaaaaaacat atgttttgga ttggactaat ttcgttggta
       61 ttgatgctcg ttgataatgt cctggtttgt tatttcaata ttgaatgtag tcgtacttta
      121 aaccaaatcg agcagactat ttgtattatc cttagtattc ttgtattttt aggagtgcta
      181 aataataaac cggatgtgaa ggtagaagac atcatgaaaa acggtatgtc atctaaaaat
      241 caaaaataat gtttggtaga gactattggg gctgggcaga aagcccagca cctcttctca
      301 gagttcgtgt caacatctca gcgcagtggt tgattgggtt taacagtcca gtggactgtt
      361 aaagattgga gataagattt gcgaagcaaa tctcagcaat tcgtgtttta cactccaaat
      421 ctgaccatta cgactgatgc gaacagagtt cgcttcgttt ccaacctcca acagtcacta
      481 ctctgactgt tggagctatg cggggggtgg gagtgaaaca gtctgggaat agactgtttc
      541 agctcaacaa ctagaaataa agacttgttg acgaactctt tttattttgg tcgagttctt
      601 tcccactccc gtttctattt atggcatgta tgttatcgtg aataccacta cttgaaggaa
      661 aagaatcgag agaaattcaa tgaacactaa aaatatcaat agtagttaaa atcataagcc
      721 gtcattagac tgagttttat gattgtgcta caatagacat aattataaga gaacggggtg
      781 atgataatga aacgtactat tctattatgc ttgccgacaa tactgttact agcagcatgt
      841 catcaaaagc cgaatcaggc caatactaaa aaaaattcgt caacagttgt ttcgactact
      901 tcaagtcagt ctgcttcaat aacttcggag cagtcaacaa gcagctctac atcggtggaa
      961 acggatcagg aagtaacaag tacagagact caggtaaatt ttaatggttc ctattatagt
     1021 gtacaaggaa aatatggcga agtgattatc gcaaataaaa agcatccgct tgcagctgat
     1081 tatgcaccgg gcgaaaatcc tgaagcctta gtagcttttc aacgattaat agcagatatg
     1141 caggcgctag gatttggtat ctccaataac tacagtggat ttcgttccta tgaaactcag
     1201 gcaagtctct accagtctta tgtaaatcag gaaggacagg cagcggcaga taggtattct
     1261 gcaagagctg gatatagtga acatcagaca ggattagcct ttgatttatt ggatacaagt
     1321 ggtaatttat tagaagagcc caatgcttct cagtggttgg ctacgaatgc acatctatat
     1381 ggctttattg tccgctatct tccaggaaaa gagtctagca caggctatat ggcagaatcc
     1441 tggcatgtgc gatatattgg tcaagaagcg acagatattt acaattcagg cttgaccttg
     1501 gaagaatatt ttggtgtacc aggtggagat tactaatttt acatttagtc agaaataagt
     1561 cgaaaaattt gtccgtataa ctaactcgtg atataataaa ccatcataat tttggagatc
     1621 catcatgctt aaagcaatgg aagtatactt ggttactaat ggtaatggtt tggaagccat
     1681 cgagttttat aaaaatgctc ttggagcaac agtggagcaa gtaaatctat ttaaagattt
     1741 cttgccagac tgccctgctg aactagaaaa ttacgtgatg aatgcacagt ttcgtttgaa
     1801 tggtcaacgg tttatgttgt cagacaacaa cccagaaatg ccttatacag taggtgacaa
     1861 tattacagtt gcgcttatca cagacgatgc tgagacagcg caggaactat acagcaagtt
     1921 atccgtagat gcaactgcta tcaatatgga acttcaagca gttccttggt ctcctgccta
     1981 tggtaatgta acagacaagt ttggtatctc ttggcaaatc aatgctgaag tagaaggcta
     2041 cggtcaggaa tattacgcag aaaactaaaa tagattggac aaggccttgt ccaatctatt
     2101 ttagtttttg ccaataagct ttgtagatat aaagttgaag agcagcagat agaacaaata
     2161 gtaaggtcat caaggctgag cttacataag ctgcaccaat agtgccagct aatatgatgc
     2221 tgacaactag aataatggct ccgagaaaca ttgttcctat gatcaatcca gcaattaacc
     2281 attgacccgc tccgcgacca aataactggt tactattttg ccagttgagc atgaggagtc
     2341 gttggtcacg ccagtaataa atctgcccag ttagcagggc tgaaatgatg atgccgactg
     2401 taaagaagac tgctagaatg agtttgactt tcatgaaacc tagagccaaa gcaaagtaaa
     2461 gtagagttgg tagtgcaaat tgcacggcag ccaataccca gaatttttgg atgataaatt
     2521 ttttgaaact aataggaagc gttcgaatga aatgataatt ttccttttcc aatgacatgg
     2581 ctactccgat gaaggttgta gaaccagcaa atagactgcc aagcaagaat ccagctaata
     2641 gagcaatacc aaagaaatcc cattcaactg aacttagacc accattctcc gtgaaacggc
     2701 taaaacttgg aaaaagtgcc acccccatga tgataggctg tatcatggtt tggaccatga
     2761 ggttgctatc tttaagagta gataggtggt gtttcactaa agcctgattg agattgctag
     2821 gaatcttggc agacttagca ttattggtcc gttttgtcga agcattttca atcgccaaaa
     2881 cttgattaaa gtagttggga atgacagttt taaacgcaaa cgtaataagt ccaaacatca
     2941 aaatgaaagg aagtccaaaa tgaaggagtg tttctagtga tatagtatgg ctgaccaagt
     3001 aatggaatcc agcaaatata ggtatgatag gaaaatcaac aaagccaccg gattcgagtg
     3061 aaacggtctg ctgggattgc aggaacatga gcgcagcaaa agccagcaag gaagaacctg
     3121 tcatcaggat tgtagaaatc aatgttttac gagggctttt tgtcagaact tccccaacaa
     3181 agtgcatgat aatcagattg actaaattag ctaaaatcca gagaatcaaa aaggaaggaa
     3241 tggaagctaa ggcgaggagc ggaccgccaa tttgccagta agtgatcaga agtaaagaca
     3301 gacacggcat gaggaagggg aggaccatcc cttgtgcaga gaggatttta gcgaggaaga
     3361 cttcttgtgg cttcagggga agtgctaaat acaactttgt atccttacta tcgtagaaaa
     3421 cggagaagaa acctgtaaaa ccgtagacaa tggcaataat ggtaaagagc gctagttgca
     3481 gagaaaagaa accaatggac tgactataat ctactcccat gaaaaagaca gaatagagaa
     3541 gtccgaaact caaaaccata aatacttgtt gcaagaggac acttttatag gctgaaaagg
     3601 aggcgtcttt gcgcttactt tgtttcttct tgacggaagc tagaagttga ggattggaat
     3661 aaagaatatt aatctttact agttcccaaa tgatggattt actcatactt cctcacctgc
     3721 cttcacttgt tggcgtccag ctaattccaa atagatggtt tccaaatctt tatcaggata
     3781 ctgtgatttg agttcatcaa gacttcctac gaaaatgagt tgcccttttc ggagaatagc
     3841 aatgcggtca cagagttgtt cagctactga aaggacgtgt gtagaaaata gaacggtgtg
     3901 accagattga gcatgttctt tcatcatttg ttttaggtcg aaagaagcct gaggatccag
     3961 tccagttagg ggttcatcca aaatccaaat atcagggtta gggatcaatg caccaataat
     4021 aatggttttc tgacgcatac cgactatcaa taggctcatg ctggcgcgct gtcatatcaa
     4081 atagactaga tagtttagcg atacggtcat caactgtatt cttttctaca ccatagacct
     4141 tgcccataaa gtgccagtat tcaaatgctg ttaagtgtag gaagatgtct ggcgaatctg
     4201 gaacataggc tatccgtttt ttgacttcat cgcggttctc ctctaggttt aaaccatcaa
     4261 cagagatagt tccataactg gcttcgatta tcgaagtcag tagactgatt gtcgttgttt
     4321 ttcctgcccc attgtgacca attaaaccga aaatctcgcc gctttcaatt gtcaaattta
     4381 ggtcatcaag tgcgattgtt tcgccgtatg tttttgtgat atggtcaaat tgtatcataa
     4441 taacctcctt gttattcgtg aactaaaagt aggggcttgt aggtattcca agccttattc
     4501 caaatgttct tcgaataata tatacaatta attacattta ttatactgct gaattagtac
     4561 aaaagcaata gtttctatca atatttttgt agtatggatg cggatatatt gcaagaagtc
     4621 gagtgtaaaa aggaatgcaa taagctcgat tatcagaaaa tttgctataa tagacctatg
     4681 aacgatttga taaagcataa gttggagttg ctgccggaca gtccgggttg ctacctccat
     4741 aaaaacaagt acggtaagat tatctatgtg ggcaaggcca aaaacctgcg caatcgggtg
     4801 cggtcttatt ttcgtggtgc ccatgatacc aagacagagg ccttagtatc tgaaattgcc
     4861 gactttgaat tcatcgtaac ggattctaat atcgaggcgc tcttgttgga aatcaatctg
     4921 attcaggaaa acaagcctcg ctataacatc atgctcaagg atgacaagtc ctatcccttt
     4981 atcaagatta ccaaggaacg tcatccacgg ctgctcatta cacggcaaat taagaaggat
     5041 agcggtcagt attttggtcc ctatccagat gtgggtgcgg ccaaccagac cctcaaacta
     5101 ttggagcgcc tctatccttt ccgcaagtgt aaattgcctg agaacaagta ttgtctttat
     5161 tatcatttgg ggcaatgttt ggctcacggg gaaaacctgc ccagcctgtc tgactatgat
     5221 aagatggcca aggaagtggc ccagttcttg acgggtcatg atgataagat tgtcaaggaa
     5281 gtgcaggaca agatgaaggc ggctgctggc aatttggaat ttgaaaaggc tgcggaatat
     5341 cgtgatgtcc ttcaatccat ttcaacccta cggaccaagc aacgagtgat ggctcatgac
     5401 ttgcaaaacc gcgatgtctt tggttattat gtagacaagg gctggatgtg tgtgcaggtt
     5461 ttctttgttc ggcaggggaa actgattgag cggaatgtca atctttttcc atattataat
     5521 gatgcggacg aagacttttt gacctacatc ggtcagtttt acagggacca gcaacatttg
     5581 attccctctg aggtcttgat accgcaggat attgaccaag aagccgtaga agctctggta
     5641 gataccaagg tcatcaagcc tcagcgtggc gagaagaagc aactcatcaa tctggcaacc
     5701 aagaatgcgc gtgttagtct ggagcagaag tttaatctcc tggagaaaaa tctggagaag
     5761 acttacggtg cagtggagaa tatcggtcag ttgctgggga ttccgacgcc tgtgcggatt
     5821 gaggcctttg acaactccaa catcatgggc accagccctg tgtcggctat ggtggtcttt
     5881 gaaaatgggg tgcctaataa aaaagaatac cgcaagtaca agattaagac ggttgagggg
     5941 ccagatgatt atgcctctat gcgtgaagtg ctgcaacgcc gttatagtcg ggtcttgagg
     6001 gacgatttga caccgcctga tttgattatc attgacggag gtcaggggca ggtcaatgtc
     6061 gccaagcagg tcatcgagca ggagttgggt atgtccattc ccattgcagg tttgcagaag
     6121 aatgacaagc accaaaccca cgaattgctc tttggcaatc cgctggaagt ggtggagttg
     6181 ccacgtaatt ctcaggaatt tttcctcctg catcggattc aagatgaggt tcaccgcttt
     6241 gctattgaat ttcatcgtca ggttcggtca aaaaattcct tctcatctaa attggacggc
     6301 atagaaggtt tgggaccaaa acgcaaacag gctttgatga agcatttcaa gtctattggc
     6361 aatatccagt cggccagtct acaagaaatc gcagaagcag gtgtgccgta taaggtggcg
     6421 gagttggtca aggaaaacct ttcttcaaag gatgagattt gaaaacattc ccataatgtg
     6481 ttagaataaa ctatcaatga ctaaataagg agaaagcaat ggcttttggt gaagaaaaac
     6541 acaaaaaaac aacatttgag aaagtgactt tagtaatcgt tgtcgtgatg gttgtcgcga
     6601 cattggctgg cttgatttta ccagctatta atgcattgat gaattaagaa cttgtattta
     6661 cagttcggca cttttatcta aggttggttt ttaagctggc ttgattttac cagctattaa
     6721 tgcattgatg aattaagaac ttgtatttac agttcggcac ttttatctaa ggttggtttt
     6781 taagctgttc atcgttagtt ttttcaaaat acagtcagta ttctctcaaa gaacgacctt
     6841 gattagctaa aaaacttctc ttatatataa gcacttcgct tgtgaataga ggtctaaaac
     6901 gcttttaagc gtttttttct aggaaagaat agggtaaatt atgagtatgt ttttagatac
     6961 cgccaagatt aaggtcaagg caggtaaggg aggcgatggg atggttgcct tccgtcgtga
     7021 aaagtatgta ccaaacggcg gtccttgggg cggtgatggt ggttatggtg gaaatgttgt
     7081 cttcgttgta gatgaaggct tgcggacctt gatggacttc cgttacaatc gtcgctttaa
     7141 ggctgatgat ggtgaaaaag ggatgaccaa aggtatgcac ggtcgaggag cggaagattt
     7201 aattgttcgt gtaccgcagg gaacaactgt gcgtgatgct gatacgggta aaattattac
     7261 agacttggtt gaaaatggtc aagaatttgt cattgctcac ggtggtcgtg gtggtcgtgg
     7321 aaatattcgt tttgcgacac ctaagaatcc agcgcctgag atttctgaaa atggagaacc
     7381 aggtgaggag cgcaatcttg aattagaatt gaaagtgttg gctgatgtag gtcttgtagg
     7441 tttcccatca gttggtaagt caacgcttct cagtgttatt acagcagcta aacctaaaat
     7501 tggtgcctac cattttacaa ccattgtgcc aaatttggga atggttcgga ccaaatctgg
     7561 cgagtcattt gctgtggcag acttaccagg tttgattgag ggtgctagtc aaggtgttgg
     7621 attgggaacg caattccttc gtcacattga gcggacacgt gttatcttgc atgttttgga
     7681 catgtcagca agtgagggtc gtgatcctta tgaagattac gtagccatca acaatgaatt
     7741 ggaaacctac aatcttcgtc tcatggagcg tcctcagatt atcgttgcca acaaaatgga
     7801 tatgccagaa gcggcagaaa atctggaaga gttcaagaaa aaattggcag ccaactatga
     7861 tgagtttgaa gaattgccac agattttccc aatttctggt attgctcacc aaggtttgaa
     7921 aaatcttttg gaagccacag ctgagttgct agagaaaacg cctgaattct tgctctacga
     7981 ggaatcagat ttccaagaag aagaggctta ctatggcttt aacccagatg agccagaatt
     8041 tgacatcagc cgtgcagatg acgcaagctg ggttctatct ggtgacaaac tagaaaaact
     8101 cttcaccatg accaacttcg atcgcgacga atctgtcatg aaatttgctc gtcagttacg
     8161 tggaatgggt gtcgatgaag ccctccgtgc gcgtggtgcc aaagacggcg acatcgtccg
     8221 tattggcaag ttcgaatttg agtttgtgga ttaacgtagc agtttgactg caagttaact
     8281 tgctagtcaa actacgccaa atcctatggg accttggcta gctaccttac taacttcacc
     8341 caaatggtag tatcgaccat ttgggctccg tgtcgtaacg ttggaaacac acttaaatcc
     8401 taaaggactt gatgtgatac ggtagccgct atggcggact acctaccaac cttactaatt
     8461 ccgcacaggc agtggtatcg actgcctgta ctccatatcg taacctgtcc ggtaagttag
     8521 tctagtatga acttagaaat tcgagagcag actatagctt tacaaatttc gttcagttgg
     8581 tgacagtcgt ttgtgagcaa tcgaaaaaaa aatagttgga ggtctgtatg ggtgataagc
     8641 caatatcctt caaggataaa gatggaaatt ttgtttcagc agccgatgtt tggaatgctg
     8701 aaaaattaga agaactcttt aacaagctta atcccaatcg caaactccgt ttggaacgtg
     8761 agcgtttggc aagagagcaa gaaaaggaat aacgtcaaaa tctgcttgtt gtatcagaaa
     8821 acaggcagat ttttttaaaa tttattgact at
//
LOCUS       DASGBY010000078         8838 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.078, whole genome shotgun sequence.
ACCESSION   DASGBY010000078 DASGBY010000000
VERSION     DASGBY010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8838
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.078"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            105..1622
                     /gene="malQ"
                     /locus_tag="U1396_001369"
     CDS             105..1622
                     /gene="malQ"
                     /locus_tag="U1396_001369"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM5342555.1"
                     /translation="MKVRQSGVLMHISSLPGKYGIGSMGQSAYEFVDFLVRTKQRYWQ
                     ILPLGTTSYGDSPYQSFSAFAGNTHFIDFDILIDKGWLAAEDLHGVDFGQNPTEVDYA
                     AIFYARRPLLEKVVANMKAQGLPEDYWMFLGENDFWIHTFAEYMAIKEHFDLKPWTEW
                     EDQGARLRYHDTLEYYRHLLADRIDYHRITQYLFFSQWKALKAYANAKGVEFVGDMPI
                     YIAADSADMWANPHFFKTDEEGKPSVVAGCPPDAFSEIGQLWGNPIYDWEAMKHDGFT
                     WWVARLRESFKIYDMVRIDHFIGFASFWEIPAGEETAVNGYRVEAPGFELFDTIKREL
                     GDLNIIAEDLGSVADKVIQLRDTTGFPGMKVLQFAFDPEGDSIEMPHNHPNNVVAYTG
                     THDNDTILGWYENETTKESRAFLDKYSNRREGETVSHALFRLLFGSPAFMAVATMQDL
                     LGLDGSARMNLPNTLGGNWTWRMTADQLTPEIEAELLDLTETYRRVNVHLVDEKS"
     gene            complement(1665..1847)
                     /locus_tag="U1396_001370"
     CDS             complement(1665..1847)
                     /locus_tag="U1396_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342556.1"
                     /translation="MKKLPTYIGVIIFVVTLLINWLLPSLAKVLNTFFIWTIVACLLY
                     TIYYWIRYWLYVRQQR"
     gene            1959..2480
                     /locus_tag="U1396_001371"
     CDS             1959..2480
                     /locus_tag="U1396_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5342557.1"
                     /translation="MKRPIHLYIFVILSSIASILRLFSAFVSTFNEERLRTSVQGVVG
                     IDVEELILVSRETANLQTGVIQKIVAVVMLGLLIAVIVFLFMKKNELASYLYIGYLFS
                     TLLLNTYSYLAGKGIANLYSDAALRDVTAASMLGAYILNIVLFAIYFGVTIFFHLRKP
                     KEKPSTAINSTDI"
     gene            complement(2534..3448)
                     /locus_tag="U1396_001372"
     CDS             complement(2534..3448)
                     /locus_tag="U1396_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEM5342558.1"
                     /translation="MKKFLRRKGIACQLLAAIFIVGINLQSPPSASANARGDDYPYTA
                     VDAVDPWRLYTRQCTSFVAFRLSTVNGFTLPPAYGDANVWGHRAKQEGYQVNMTPTVG
                     AVAWWETPMHVAWVSAVNGDTVEIEEYNYGVRYTYGRRVIPKNAVSGYIHFKDLGAGT
                     TNSQPALAPSDTYTFNNQLAIKSQASLSSPTLDYYYAGESVRYDKVLEADGQRWISYI
                     SYSGARRYIAIQPTITQSTNNSLPASGSYTIQSYSSVRNNPSLSSPEITFYGAGSVVR
                     YDKVITAEGRTWISYISYSGARRYIAIS"
     gene            complement(3628..5316)
                     /locus_tag="U1396_001373"
     CDS             complement(3628..5316)
                     /locus_tag="U1396_001373"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEM5342559.1"
                     /translation="MNQKQVIAERLAAILPSLEVEAIYNLLEKPKSSEMGDIAFPAFS
                     LAKVERKAPQAIAADIVEKLDTTGFEKVVATGPYVNFFLDKAAISHQVLTDVITEKDQ
                     YGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVIGDALANIHEKLGYKPIRINHLGD
                     WGKQFGMLIVAYKLWGDKAAVEADPISELLKLYVRINAEAEEKPELDDEARQWFKKLE
                     DGDPEAHELWQWFRDESLVEFNRIYDKLDVTFDSYNGEAFYNDKMDEGIQILEEKGLL
                     QESKGARIVDLESYNLPPALIMKTDGATLYITRDMATAMYRKRTYDFVKSIYVVGQEQ
                     INHFKQLKAVLKEMDFDWSDDMTHVTFGLVTKDKKKLSTRKGNIILLEPTLDEAISRA
                     LTQIEAKNPDLENKEEVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQ
                     YAYARIQSILRKANFVPSAENDYKLADAESWDIIKHIQNFSNVVERAGDKFDPSLIAK
                     YAINLAQAFNKYYAHTRILDESPERDSRLALAYTTGLVLKEALRLLGVKAPEKM"
     gene            5423..5863
                     /gene="argR"
                     /locus_tag="U1396_001374"
     CDS             5423..5863
                     /gene="argR"
                     /locus_tag="U1396_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5342560.1"
                     /translation="MNKAGRHDLIKAMIRQEKIGRQTDIQQGLEARGVVVTQTTLSRD
                     LRELGVIKIHENGRSFYSLAIEEERVNFIQLLAQYAYKVDRASFILVLHSELGEAALM
                     ANIIDAEKPETILGTLAGANTLLVICRDDVAAQQVEAEINYYLN"
     gene            5878..8418
                     /gene="mutS"
                     /locus_tag="U1396_001375"
     CDS             5878..8418
                     /gene="mutS"
                     /locus_tag="U1396_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEM5342561.1"
                     /translation="MATEKISPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAA
                     QILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAVGVV
                     KREVVQVITPGTVTDSSKMGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTS
                     LCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDEVTEDVQLIDNSLTDLEKA
                     AAGKLLSYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLY
                     WLLDETKTAMGMRLLRTWIDRPLIDLKRIENRQAIVQVFLDYFFERSDLVEALKGVYD
                     IERLASRVSFGKTMPKDLLQLSQTLGNIPAIKNILQQINEPALGNLVAGLDPIPELHA
                     LISSAIDPEAQGTITDGNIIRTGFDETLDQYRLVIREGAGWIAEIEAKEREASGINNL
                     KIDYNKKDGYYFHVTNSNLGNVPDHFFRKATLKNSERYGTEELAKIEGQMLEARDKSA
                     NLEYEIFMRIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELT
                     IDRGRHAVVEKVMGKQTYIPNSIHLNTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQM
                     GSYVPADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDE
                     LGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEK
                     DGQVTFLHKIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLENQAPTAPTTPAPI
                     VVEEPSGQIDLFADTPSHPVLDELAKLDIYNMTPMEVMMAVAELKKKI"
     gene            8671..>8838
                     /locus_tag="U1396_001376"
     CDS             8671..>8838
                     /locus_tag="U1396_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342562.1"
                     /translation="MKIILTIVYSLGVVWNILFLAVNVGRIPVINLLWPAVILVACAI
                     NLYFLWTRKQES"
BASE COUNT         2346 a         1708 c         2195 g         2589 t
ORIGIN      
        1 actaacagaa ttaaatggaa attccttgat ttgttaccgt tttcagtata taataaaaaa
       61 gagaaaacgt ttgcgttgtg caagcggatt agataggaga acttatgaaa gtaagacaga
      121 gtggtgtgct gatgcacatt tcatcattac cagggaaata tggaattggt tccatgggac
      181 aatcggctta tgaatttgtt gattttttgg taagaactaa gcaacgctat tggcaaatct
      241 tacctttggg aacaaccagt tatggagatt ctccttacca gtcattttca gcttttgcag
      301 ggaatactca ttttattgat ttcgatatat tgattgataa aggctggctg gcagcagagg
      361 atttacacgg tgttgacttt gggcagaatc ctacagaggt agattacgca gccatttttt
      421 atgctcgccg tccattactg gagaaggtag ttgccaacat gaaggcacaa ggcttgccag
      481 aagattattg gatgttctta ggggagaatg acttttggat tcataccttt gcggagtata
      541 tggctataaa agagcatttt gatctcaaac cttggacaga gtgggaagat caaggggcgc
      601 gcttacgtta ccacgatacc ttggaatatt atcgtcactt gttggcagat cgaattgatt
      661 atcaccgcat tacacaatat ttattctttt cacaatggaa ggctttaaag gcttatgcca
      721 atgctaaagg tgttgagttt gttggggata tgccgattta tatcgcggct gattctgctg
      781 atatgtgggc caaccctcat ttctttaaaa cggatgaaga aggcaagccg agtgtggttg
      841 caggatgccc accagatgcc ttttcggaaa ttggtcagct ttggggcaat ccgatttatg
      901 attgggaagc gatgaagcat gacggattta cttggtgggt tgctcgttta cgtgaatcct
      961 ttaagatata cgatatggta cgtatcgacc actttatcgg ctttgcctcc ttctgggaaa
     1021 ttccagcggg tgaagaaaca gctgtaaatg gctatcgtgt cgaagcacca ggttttgagt
     1081 tatttgatac aatcaaacgt gaactcggag acttaaatat catagctgag gatttgggct
     1141 ctgtggcaga caaggtcatc caattacgtg atacgacagg ttttcctggt atgaaagtcc
     1201 tgcagtttgc ttttgatcca gaaggagaca gcattgaaat gccacataac catcctaata
     1261 atgtggtggc atatacggga acccatgaca atgatacgat tcttggctgg tacgaaaatg
     1321 aaacaacgaa agaatcgcgt gcattcttag ataagtacag caatcgtcgt gagggggaaa
     1381 cggtcagtca tgctcttttc cgtctgctct ttggttcacc tgcctttatg gcggtggcta
     1441 ctatgcagga cctacttggt ttggatggtt cggctcgcat gaacttgcca aatacgcttg
     1501 gtggtaactg gacttggaga atgacggcgg atcaattgac accagagatt gaagcggaat
     1561 tgctagacct tacagaaacc tatcgtcggg ttaatgtgca tttggttgat gaaaagtcat
     1621 aataaaatga actcctctaa gcagctaact tagaggagtc tttgttatct ctgttgtcgg
     1681 acatagagcc agtagcgaat ccagtagtag atggtgtaga gtaggcaggc tacgatagtc
     1741 caaatgaaaa atgtattcag cactttagca agacttggca ataaccagtt aatcagtagg
     1801 gtaactacaa aaataatcac tccgatatag gtgggcaatt tcttcatgag ttttcctcct
     1861 ttgaacttag tataacaaaa ttatatttgc agtcaaatga aatatatgat tgacaatata
     1921 aaaatatgag tataaaatat agaaaaaagg aggctattat gaaaagaccg attcatttgt
     1981 atatttttgt gatactatcc agtattgcca gtattttaag gctgtttagt gcctttgtgt
     2041 cgacttttaa tgaggagcga cttcgtacgt ctgttcaggg agttgttggg attgatgtag
     2101 aagaattgat tcttgtttcg cgagaaacag ctaatctcca gacaggtgtc attcaaaaga
     2161 tagtagccgt ggtcatgctt ggtcttttga ttgcggtcat tgtcttctta ttcatgaaga
     2221 aaaatgagct ggcttcttat ctttacatcg gctatctatt ttcgacctta ctgctgaata
     2281 cctatagcta cctagcaggt aaggggattg ccaacctcta ctcagatgca gccttgcgtg
     2341 atgtgacagc agcaagtatg ctaggggctt acatccttaa cattgtccta tttgccatct
     2401 attttggggt aactattttc ttccatctgc gtaaaccgaa agaaaaaccg agcacagcta
     2461 ttaattcgac agatatttaa tgaaaaaagc acagtctaaa agattgtgct tttaaatttt
     2521 gtcttttttg tgattaggag atggcgatgt agcgtcgagc acctgagtaa ctgatatagc
     2581 taatccatgt gcgaccttcg gcagtaataa ctttatcata gcgaacgact gagccagctc
     2641 cgtagaaggt gatttcagga ctggacagac ttggattgtt gcggacacta gagtaggact
     2701 ggatggtgta gctacctgat gctggtaggc tgttgtttgt agattgagta atggtaggct
     2761 ggatggcgat atagcgccga gctccagaat agctgatata gctaatccag cgttgtccgt
     2821 cggcttcgag aaccttgtcg tagcggacgc tttcgccagc ataatagtaa tcgagggtag
     2881 gactagatag actagcttga gatttgatgg ctagttggtt gttaaaagta taggtgtcgc
     2941 ttggggctaa ggcgggttga gagttggttg ttcccgctcc gaggtcttta aaatgaatgt
     3001 agccgctaac ggcatttttg gggataactc gccttccgta ggtatagcga acaccgtagt
     3061 tgtattcctc aatctctacg gtatctccat ttactgcaga aacccatgcg acatgcatgg
     3121 gagtttccca ccaggcaacg gcgccgacag taggtgtcat gttaacttga tagccttctt
     3181 gtttggcacg atggccccaa acattggcat caccataggc aggtggcaat gtaaaaccgt
     3241 taactgtgct aagtcgaaag gctacaaagg aggtgcactg gcgtgtgtag agtctccatg
     3301 gatcgactgc atcaactgct gtgtagggat agtcatctcc tcgtgcattg gctgaggctg
     3361 aaggtgggga ttgtaaattg ataccgacaa taaaaatggc ggctagaagc tgacaggcga
     3421 ttccttttct tctcaaaaat tttttcatta tttctccttg tgtagtagat gtagaagtat
     3481 cacgtgtacc tcccatctat atattcgtaa ttgaaatgaa tctttttgat tttcatttgg
     3541 gataaggagt tgttgtgata aggaatcgga aacgagagta ggcaatgtgg tagaaaaaaa
     3601 gcctcggctg atggccgaag gctttgatta cattttttct ggtgctttta cgccgagaag
     3661 acgtagagct tctttgagga caagtcctgt tgtgtaggca agtgctagac ggctgtcacg
     3721 ctctgggctt tcatccaaga tacgagtgtg tgcgtagtac ttgttgaagg cttgcgccag
     3781 gttgatagca tatttagcaa tgagggatgg gtcaaatttg tcaccagcac gttctacaac
     3841 gtttgagaag ttttggatgt gcttgatgat gtcccagctt tctgcatcag ccagtttgta
     3901 gtcattttct gcgcttggta caaagtttgc cttgcgtagg atagactgga tgcgggcgta
     3961 tgcgtattgt acataaggac ctgtttcgcc ttcgaaggaa accatagctt ctaggtcgaa
     4021 gtcgtagccg ttgtcacggt cggttttgag gtcgtagaac ttaacagcgc ctacaccaac
     4081 tgcgtgtgct acttcttcct tgttttcaag gtcagggttt ttagcttcga tttgagtaag
     4141 ggcgcgtgaa atagcttcat ctagagttgg ctcgagtagg atgatatttc ctttacgagt
     4201 ggatagcttt ttcttgtcct tggtaaccag accgaaggtg acatgggtca tatcgtcgct
     4261 ccagtcgaaa tccatttctt tcaagacagc cttgagttgt ttgaagtggt tgatttgctc
     4321 ctgaccaacg acatagatgc ttttcacaaa gtcgtaagta cgtttgcggt acatagctgt
     4381 tgccatgtca cgtgtgatgt aaagtgttgc accgtctgtt ttcatgatga gggctggtgg
     4441 gagattgtag ctttcaaggt caacgattct cgcaccttta gattcttgaa gaagtccttt
     4501 ttcttctaag atttggatgc cttcgtccat cttatcgttg tagaaagctt cgccattata
     4561 gctgtcgaaa gttacatcga gtttgtcgta aatgcggttg aattcgacca agctttcatc
     4621 acggaaccat tgccatagct cgtgtgcttc tggatcgcca tcttccaatt ttttgaacca
     4681 ttgacgtgct tcgtcgtcca actcaggctt ttcttccgct tcagcgttga tacgcacata
     4741 gagtttaagg agttctgaaa ttgggtctgc ttcgaccgca gccttgtcac cccaaagttt
     4801 gtaggcaaca atcaacatac caaattgttt accccagtca cccaagtggt tgatgcggat
     4861 tggcttgtag ccaagctttt cgtggatgtt agcaagggca tcaccgataa cggttgagcg
     4921 caaatgtcca actgagaatg gtttagcaat gtttgggcta gacatgtcga tggttacatt
     4981 gcgtccttgg ccaatgttga gtttaccgta ttggtctttt tcagtaataa catctgtcaa
     5041 gacttggtgg gaaatcgcag ctttgtccaa gaagaagttg acgtaaggac cggtagctac
     5101 aaccttctca aagccagttg tatcgagttt ttcaacgatg tccgctgcga tagcctgtgg
     5161 agccttgcgt tccactttag caagtgagaa ggctgggaag gcaatatcgc ccatttctga
     5221 tgattttggt ttttctagca gattgtagat agcttccact tccaaactcg gaaggatggc
     5281 agccaatctt tctgcaatca cttgtttttg attcatatag gatttcctcc aaagttattg
     5341 attctatttt aacacatttc taggctaata gcggggaaaa gtgttataat atttctataa
     5401 atatacattt tgaggtaaaa tgatgaataa agcaggacga catgatttaa taaaggccat
     5461 gattcgtcaa gaaaaaatag ggcgacaaac ggatattcag caaggtttag aggctcgagg
     5521 ggtagtggta acccagacaa ccttgtctcg tgatttacgt gagttgggag tgataaaaat
     5581 tcatgaaaat ggacgttcat tttattcctt agctatcgaa gaagagcgcg tgaattttat
     5641 ccaattattg gcacaatatg cgtataaagt agatagggct agttttattt tggtccttca
     5701 ttcagaactg ggagaagcgg ccttgatggc caatatcatt gatgcagaaa agccagagac
     5761 tattttggga acgctggcgg gagctaatac gcttttagtt atttgtcgag atgatgtagc
     5821 ggctcagcaa gttgaagcgg agattaacta ctatttgaat tagaacaggg agagatgatg
     5881 gcaacagaaa aaatttctcc gggaatgcag cagtatctgg atataaaagc acagtatcca
     5941 gatgcttttt tgcttttccg tatgggagac ttttatgaat tattttatga agatgcggta
     6001 gaagcggcac agattttgga attgtccttg accagtcgga ataagaatgc ggaaaatccg
     6061 attcctatgg cgggggtacc gtatcacgcg gcacaacagt atatcgacac acttgttgaa
     6121 ctggggcata aggtcgctat tgctgagcag atggaagatc ctaagcaggc agtcggcgtg
     6181 gtcaagcggg aagtagtaca ggtcattact cctggtacgg taacagactc gtccaaaatg
     6241 ggagcagata gtaactattt ggttgcgatt gaccgtcagg gagtgcagtt tgcactttct
     6301 tatatggatg tgtcaacagg tcagtttttt gtgactagtt tggatgattt tactagtctt
     6361 tgcggtgaga tccgcaattt acgggcacgt gaattggtca tcggctatgc tttatctgag
     6421 gaagaagagc aggtcttttc aaaccagatg aacctcctac tctcttttga agatgaggtg
     6481 acagaggatg tccaattgat tgataactcc ttgacagatt tggaaaaggc tgcggcgggc
     6541 aaactcctca gctacctaca tcggactcag atgcgagatc tgagccactt gcaaaaggtg
     6601 gtccactatg aaatcaagga ctatctgcaa atggactatg caaccaagtc cagtctggac
     6661 ctgcttgaaa acggtcggac aggcaagaag catggtagtt tgtactggtt gttagacgaa
     6721 actaagacag ccatgggtat gcgactattg cggacatgga ttgatcgtcc cttgattgac
     6781 cttaagcgga ttgagaatcg tcaggctatc gttcaggttt ttctggatta cttctttgaa
     6841 cggagtgact tggttgaagc tttaaaaggt gtctatgaca tcgaacgctt ggctagccgg
     6901 gtatcttttg gaaaaaccat gccaaaggat ctcttgcagc tctcccagac tctgggaaat
     6961 atcccagcaa tcaagaatat cttgcaacaa atcaatgagc ctgctctagg caatttggtg
     7021 gctggattgg acccaatccc agaactgcac gctctcatca gctctgctat tgacccagaa
     7081 gcccaaggga ccatcacaga tggaaacatc atccgtacgg gctttgatga aacgctggat
     7141 cagtatcgtc tggtcattcg tgagggagcg ggttggattg cggagattga ggctaaggag
     7201 cgtgaagcgt ctggtatcaa taatcttaag attgattaca ataaaaaaga cggttactat
     7261 ttccatgtta ccaattccaa tctgggcaat gtgccggacc attttttccg taaggcgacc
     7321 ttgaaaaact cggagcgcta tggaacggaa gagttggcta agattgaagg gcagatgttg
     7381 gaggcgcgtg ataagtctgc taatttggag tacgagattt tcatgcggat tcgccaagag
     7441 gttgagaagt atataggtcg cttgcagaag ctggctcgga ccattgcaac catcgatgtt
     7501 ttgcaggcct ttgcagttgt ggcggagcag caacatttgg tttgtccacg ctttacagat
     7561 caaagagaac tgaccattga ccgtggtcgt catgcggtgg tggagaaggt catgggcaag
     7621 cagacctaca ttcccaactc tattcacttg aataccgata cgcatatgca actgattact
     7681 ggtccaaaca tgagtggtaa gtctacctat atgcggcagt tggcggttat cgtcatcatg
     7741 gcgcagatgg gttcctatgt gcctgcggat caggctgaat taccgatttt cgatgctatt
     7801 ttcactcgta ttggggcggc agacgacttg gttagtggtc aatcgacctt catggtcgaa
     7861 atgatggagg ccaataaggc agtccgtctg gcgacagatc ggtcactcat cctctttgat
     7921 gagttggggc ggggaacggc cacctatgac ggtatggccc tggcccagtc tatcatcgag
     7981 tacatccacg acaagattgg agccaagact ctctttgcta cccactacca tgagttgaca
     8041 gaccttagcc agaccttgga acacctagag aatgtccatg tatcgacctt ggagaaggac
     8101 ggtcaagtca ccttcctcca caagattgcc caaggtccag ctgacaagtc ctacgggatt
     8161 catgtggcta agattgcggg aatgccagag gaactattgc agcgggcgga caggattttg
     8221 cagacgcttg aaaaccaagc tcctactgca ccaactaccc cagctccgat agtcgtggaa
     8281 gagccgtctg gtcaaatcga cctcttcgca gacacgcctt ctcacccagt cctcgatgaa
     8341 ctggcaaaac tggatatcta caatatgacc cctatggaag tcatgatggc agtggcggag
     8401 ttgaagaaaa aaatataaga caatgaaagt caggacaatt gttctggctt ttttgccgtt
     8461 tagtcagttt aggtgttatt ctcggaacca ttatttctct cataacctct tctattgtcg
     8521 gacaaggaac ttatctacct cttctggttt atctttacct tggtatacgc tttgctattt
     8581 ttcctaaacc atcggaaaat ggagcggcaa atcaaggaca ttaacggtcg tttgtagtat
     8641 aatagcacta tcattttgtt ggagtgtttt atgaaaatta ttttgacgat tgtctatagc
     8701 ttgggagtgg tgtggaatat cctctttctt gcggtaaatg ttggcagaat tccagtcatc
     8761 aacttgcttt ggcctgctgt gattttagtg gcctgtgcta ttaacctgta ctttttatgg
     8821 actagaaaac aagagtca
//
LOCUS       DASGBY010000079         8831 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.079, whole genome shotgun sequence.
ACCESSION   DASGBY010000079 DASGBY010000000
VERSION     DASGBY010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8831
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.079"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            141..815
                     /locus_tag="U1396_001377"
     CDS             141..815
                     /locus_tag="U1396_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEM5342563.1"
                     /translation="MSEQFIPSVLSDLRQDIVQMPEVIKECSGIRIYGRRIRSVLFTT
                     DVSIIANHNADAILAVYPFTPSPAIIKSIMLVASVPVLAGVGGGLTTGMRSANMSLLS
                     ESEGAYAVVVNGPTDVKTIEAINKVVDIPIIYTVVSEKSDLTSRIKAGVDILNVSCGM
                     ETPRVVKKIREAFPDFPIIATGGPTDDSIRRVIEAGANAVSYTAPSNGELFKGKMEKY
                     RKHAKD"
     gene            1033..1335
                     /gene="gatC"
                     /locus_tag="U1396_001378"
     CDS             1033..1335
                     /gene="gatC"
                     /locus_tag="U1396_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017644687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEM5342564.1"
                     /translation="MKISEAEVRHVAKLSKLEFSDQETAEFATSLSKIVDMVELLNEV
                     DTTGVAVTTTMADRKNVLRADIAQKGESREELFKNVPETQDNFIKVPAILDGGGDA"
     gene            1335..2801
                     /gene="gatA"
                     /locus_tag="U1396_001379"
     CDS             1335..2801
                     /gene="gatA"
                     /locus_tag="U1396_001379"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014295200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEM5342565.1"
                     /translation="MTFNNKTIDELHDLLVKKEISALELTKATLEDIKSREGAVDAFL
                     TITEDAALAQAAALDEKGIDADNVMAGIPLAVKDNISTKGILTTAASKMLYNYEPIFD
                     ATSVSQAYAKDMIVVGKTNMDEFAMGGSNENSAFKPTKNAWDQTKVPGGSSGGSAAAV
                     AAGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGTVSRFGLIAFGSSLDQIGPFSQTV
                     KENAQLLNVISGHDVKDATSTINEIADFTSKIGQDIKGMKIALPKEYMGEGIDPQVKE
                     TILKAAKHLESLGAIIEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGIRYGFRAEDA
                     TNLEEIYVKTRSQGFGEEVKRRIMLGTFSLSSGYYDAYFKKAGQVRTLIIQDFEKVFA
                     DYDLILGPTAPTVAFGLDTLNHDPVAMYLADLLTIPVNLAGLPGLSIPAGFVEGLPVG
                     LQLIGPKYSEETIYQVAAAFEATTDYHKQQPVIFGGAN"
     gene            2801..4240
                     /gene="gatB"
                     /locus_tag="U1396_001380"
     CDS             2801..4240
                     /gene="gatB"
                     /locus_tag="U1396_001380"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEM5342566.1"
                     /translation="MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSF
                     PGVLPVLNKGVVDAGIKAALALNMDIHKDMHFDRKNYFYPDNPKAYQISQFDEPIGYN
                     GWIEIELEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR
                     SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEKFGTKTELKNLNS
                     FNYVRKGLQHEVERQAKILRSGGQIQQETRRYDESTGETILMRVKEGSADYRYFPEPD
                     LPLYEIDDSWIDEVRAELPVFPKARRAHYVENLGLTTYDAGQLTSTKALSDFFEAAVA
                     AGGDAKQVSNWLQGEVAQFLNAEGKTIEQIALTPENLVEMIALIADGTISSKIAKKVF
                     VHLAKEGGSAKAYVEKAGLVQISDPAVLIPIIHQVFADNEAAVADFKSGKRNADKAFT
                     GFLMKATKGQANPQVAQQLLAQELAKLLD"
     gene            4558..4713
                     /locus_tag="U1396_001381"
     CDS             4558..4713
                     /locus_tag="U1396_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HEM5342567.1"
                     /translation="MPMGNSSKSDGKEEHLLTAFEVVQTILGFGSFTIALIGLCYKIF
                     KDNDKKK"
     gene            complement(5016..6014)
                     /locus_tag="U1396_001382"
     CDS             complement(5016..6014)
                     /locus_tag="U1396_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5342568.1"
                     /translation="MVTIKDIAKQAHLSSATVSRVLKGDLTLSVSQETRDRIFNLAQD
                     LGYTKHLKKQAPQQKGTIGIVQWYTESEELADLYYYSIRASIEQTASLLGYQIIRSFN
                     DLTHPLLQEVDGIIAVGKFSSGQIAELTNLSSKLIFVDSDTLTEGFSCITTDFEHSVQ
                     TVIDHFRSQGLTDIGLLVGQEETTDGYQLPTDPRLTAFRDYLDTLGMLQEDYIYQGKF
                     STQSGYELMSQAIEDLGDQLPPAFFMANDTLAVGALRALQERQIAVPGRVQLITFNDT
                     AITRQVYPALSSISVFTEEMGQEAMQLLDRVIASPQPHHPRKIKLGTQLVIRESSY"
     gene            6147..7319
                     /locus_tag="U1396_001383"
     CDS             6147..7319
                     /locus_tag="U1396_001383"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEM5342569.1"
                     /translation="MNTEQLKQAFLDVFGQEADATFFSPGRINLIGEHTDYNGGHVFP
                     AAITLGTYGAARKRDDQLLRFYSANFEELGIIEVDLNNLVFDKADNWTNYAKGVLKFL
                     QEAGHAIDTGMEVFVYGNIPNGSGLSSSASLELLIGIIAEELYGLELTRLDLVKIGKQ
                     TENHFIGVNSGIMDQFAIGMGADNRAIYLDTNTLEYDLVPLDLGDHVIVIMNTNKRRE
                     LADSKYNERRAECEKAVEELNAVLNIQTLGELDEWTFDQYSYLIKDENRIKRARHAVL
                     ENQRTLQARKALEEGDLATFGRLVNASHVSLEHDYEVTGLELDTLAHTAWEQEGVLGA
                     RMTGAGFGGCGIAIVHKDKVEAFTENVGKTYTEVVGYEPSFYVAEIAGGSRVLSRK"
     gene            7329..8810
                     /gene="galT"
                     /locus_tag="U1396_001384"
     CDS             7329..8810
                     /gene="galT"
                     /locus_tag="U1396_001384"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--hexose-1-phosphate
                     uridylyltransferase"
                     /protein_id="HEM5342570.1"
                     /translation="MMAGLVDRFVEQVIANSDFEEMDALYLHNRVLALVGDQVLTVQT
                     DLEDLIELKDELLAHGVRTGFVGELLEEQDMVGACLMDLMTPSPSQVNRDFWQTYQDS
                     PEQAIGDFYELSKRNDYIKMAAIAKNIYYQVSTEYGDLEITINLSKPEKDPKSIAAAT
                     KAEASNYPKCLLCMENEGYQGRINHPARANHRIIRLELGQEKWGFQYSPYAYYNEHAI
                     FLNQEHVPMVISPRTFEQLLDLLDLLPGYFVGSNSDLPISGGSILTHNHYQGGRHSFA
                     MEKAPIERQLVFDGFESVSAGIVKWPMSVIRLSSADKPSLLGLATKILEKWRSYSDDN
                     VQIKAETDGTPHHTITPIARKRGDLYELDLVLRDNQTSEEFPDGIYHPHPDVQHIKKE
                     NIGLIEVMGLAILPPRLKAELAEVEKFLLGQDSQVADYHQPWAESLKTAHPDVTEETV
                     EQVVRESVGQIFARVLEDAGVYKRTPEGQAAFLRFVEFVGLAT"
BASE COUNT         2407 a         1676 c         2232 g         2516 t
ORIGIN      
        1 gcgaaagctg tctttttttt aatctgttga aaaagtattt aattgtgaaa gcagtggtaa
       61 aatggactgt ttttgtgtat cttccatgaa ataatatgtt atactatata ttattgtagc
      121 tagtatagag gaggttgcgg atgagcgaac agtttattcc atctgtttta tcagatttac
      181 ggcaggatat tgttcagatg ccagaagtta tcaaggaatg tagtggaatt cgtatttatg
      241 gtcgtcgcat tcgttcagtc ttatttacaa cggatgtgtc tattattgcc aatcacaatg
      301 cagatgctat tttggctgtt tatccattta cgcccagtcc agctattatc aaaagtatta
      361 tgttggttgc gtcagttcca gtcttggctg gtgttggtgg aggcttgacg acaggtatgc
      421 gttcagctaa tatgagtcta ttgtctgagt cggagggagc atacgctgtt gtggtaaatg
      481 gaccaacgga tgtaaaaaca attgaggcaa tcaataaggt agtagatatt cctatcattt
      541 ataccgttgt ttctgaaaag tctgatttaa cctcacggat taaagctgga gtagatattt
      601 taaatgtttc ttgcggtatg gaaacgccaa gggttgtgaa gaagattcga gaagctttcc
      661 ctgactttcc aattattgcg actggtggtc cgactgatga ctctattcgt cgggttatcg
      721 aagctggagc caatgctgtc tcctatacag caccaagtaa tggggagctt tttaaaggga
      781 aaatggaaaa ataccgcaaa catgcaaagg attagctcat aaaaaagata ggctaagcaa
      841 acagtaagtt ttattgctag atgaaacttg ctgtttttta tcgttttacg gtgtgagatt
      901 aggaatactt cgcaatttaa agaatggatt tttaggagga aattggtaac atattaggtc
      961 atttctacct ttgtctgggg ctggaaatat ggtataatga gaagatagat ttccattagg
     1021 aggaaagtaa gaatgaagat ttctgaagct gaagtccgtc acgttgccaa gctgtctaag
     1081 ctggaatttt cggatcaaga aacagcggaa tttgcgacaa gtttgagcaa gattgtcgat
     1141 atggttgagt tgctcaatga agtggatacg acaggtgttg cggtgacaac gaccatggct
     1201 gaccgtaaga atgtcttgcg agcagatatt gcccaaaaag gtgagagccg tgaggagctc
     1261 tttaaaaatg tgcctgagac ccaagataac tttatcaagg taccagctat tctagacggg
     1321 ggaggagatg cctaatgacc tttaacaata aaaccattga tgaattgcat gacctccttg
     1381 tcaaaaagga gatttcggct cttgagttga ccaaggcaac tttggaagac attaagagcc
     1441 gtgagggagc agtggatgct ttcttgacta tcacagaaga tgcggccttg gcgcaggctg
     1501 ctgcccttga tgaaaaaggg attgatgcgg acaatgttat ggcagggatt cctttggcag
     1561 tcaaggacaa tatctctact aaggggattt tgaccacggc agcttcaaaa atgctctata
     1621 actacgagcc gattttcgat gcgacatcgg tttcccaagc ctatgccaag gatatgattg
     1681 ttgttggtaa gaccaacatg gatgagtttg ctatgggtgg ttctaatgag aactcagcct
     1741 tcaaaccgac caaaaatgct tgggaccaga caaaagttcc tggtggttct tcaggtggct
     1801 cagctgctgc agttgcggct ggtcaagtcc gtttatcact cggttctgac acaggtggct
     1861 ctatccgtca accagcagcc tttaatggta tcgtcggtat gaaaccgacc tatggaacgg
     1921 tgtcacgttt tggtttaatt gcctttggtt catctcttga ccagatcggt ccattctcac
     1981 agacggttaa ggaaaatgcc cagttgctca atgtcatctc tggtcatgat gtcaaggatg
     2041 caacatcaac catcaatgaa attgcagact ttactagcaa gattggtcag gacatcaagg
     2101 gtatgaagat tgctctgcca aaagaataca tgggagaagg gattgatccg caggtgaagg
     2161 aaactattct caaggcggct aagcacttgg aaagcttggg agcaatcatt gaagaagtca
     2221 gcctgccaca ttctaagtat ggggttgctg tttactacat cattgcttca tcagaggcgt
     2281 cttctaactt gcaacgtttt gacggtatcc gttatggttt ccgtgcagaa gatgcgacca
     2341 acttggaaga aatctatgtg aaaacccgta gccaaggttt tggtgaggaa gtcaaacgtc
     2401 gtattatgtt aggtacattt agcttgtcat ctggttacta cgatgcctac ttcaagaagg
     2461 ctggtcaggt acggaccttg attatccagg attttgaaaa agtctttgca gactatgact
     2521 tgattttggg gccaacagct ccgacggttg cctttggttt ggacacgctc aaccatgacc
     2581 ctgtggctat gtacttggcg gacttgttaa caattcctgt aaacttagca ggtcttcctg
     2641 gtctttctat tcctgctggt tttgttgaag gcttgccagt cggtttgcag ttgattggtc
     2701 caaaatattc agaagagacc atttaccaag tggctgctgc ctttgaagcg acaacagact
     2761 accacaagca acaaccagtg atttttggag gtgctaacta atgaactttg aaacgattat
     2821 tggtctagaa gtccatgtgg agttgaatac caactcgaaa attttctcac cttcatctgc
     2881 tcattttggt gaggatccaa atgccaatac caacgtgatt gactggtctt tcccaggtgt
     2941 ccttcctgtt cttaataagg gcgttgtgga cgcaggaatc aaggctgcct tggctttgaa
     3001 catggacatt cataaggaca tgcactttga ccgtaagaac tatttctatc ctgataaccc
     3061 taaagcctat cagatttccc agtttgacga gccgattggc tacaatggct ggattgagat
     3121 tgagttagaa gatggttcga ccaagaaaat ccgtatcgag cgtgcccact tggaagagga
     3181 tgctggtaag aatacccacg ggacagacgg ttattcttat gtggacctca accgtcaagg
     3241 agtgccactg attgagattg tatcagaagc cgatatgcgt tcgcctgagg aggcctatgc
     3301 ctacttgact gcgctcaagg aaattatcca atacactggt atttcagacg tgaagatgga
     3361 agagggttct atgcgcgtgg atgccaacat ctctcttcgt ccctatggtc aagaaaaatt
     3421 tggtaccaag actgagttga aaaacctcaa ctccttcaac tatgttcgca agggcttgca
     3481 acacgaagta gaacgtcagg ccaaaatctt gcgttcaggt ggtcaaatcc agcaggaaac
     3541 gcgtcgttac gatgaatcta ctggtgaaac cattctcatg cgtgtcaaag aaggttcagc
     3601 ggactaccgt tacttcccag agccagacct accgctctac gagattgatg atagctggat
     3661 tgatgaagtg cgtgcagaat tgccagtctt tccaaaggct cgccgtgctc actatgtgga
     3721 aaacttgggc ttgactacct acgatgctgg tcagttgaca tcaaccaagg ctctgtctga
     3781 cttctttgaa gcagcagtgg cagcaggtgg cgatgctaag caggtatcca actggttgca
     3841 gggtgaggtg gctcagttcc tcaatgctga aggtaagact attgagcaaa tcgctttgac
     3901 accagaaaac ttggttgaga tgattgcctt gattgcggat ggcactattt catccaaaat
     3961 tgctaagaaa gtctttgttc acttggctaa ggaaggcggc tctgctaagg cttatgttga
     4021 gaaggctggt ttggtacaga tttcagaccc tgcggtcttg attccgatta tccaccaagt
     4081 ctttgcggat aacgaagcgg ctgtagctga cttcaagtca ggtaaacgca atgcagacaa
     4141 ggcctttact ggtttcttga tgaaagcgac taagggacaa gctaacccgc aagttgcaca
     4201 acaactcttg gctcaggaat tggctaagtt gttggattaa attgaataga agaaaaccgc
     4261 taggattgaa tcttagcggt ttttactgtt acttgtaaac taggtgcttc tatcttattt
     4321 ttatgctata ttttaaaaac ggtataaagt attagaaggt agcgcgggta ttgactgtta
     4381 aaggatagtt agctaaaatg aaaaaatatc atcactatag aagagttgta attttttggg
     4441 ggttctcaaa gatttcggga atactgcact attccaataa tttttaggaa tgagtatgtt
     4501 atactagatg ggtagaaaag tgaagacggt ggctcttgat tttctgaaag tgaggtgatg
     4561 cctatgggca attcatcaaa atctgacgga aaggaggagc atcttttgac agcttttgaa
     4621 gttgtgcaaa ctattctagg ctttggtagt tttactattg cattgattgg cttgtgctat
     4681 aaaatcttca aagataatga caaaaagaaa taaccgtcaa actttggaca gtaacggtta
     4741 tttctaaata atctaaactg agccaccgtc tttttaacgg ttctacattt ggggctggat
     4801 tgccgtccag ctcctttttc tatatccatt ataccagatt acttgtaaaa tgcaaataat
     4861 ctgttcatgt tggctatgag catgtgctat gcaaatttta gtacaagttt tacaagaagt
     4921 ttaacatctt taatacttat tgaaaagccg tactcggtat caaaccactt gtataaaatt
     4981 caatataagt aacggaatga tggaagattt ccttatcaat aagaactctc gcgtattact
     5041 agctgggtac ccaacttaat cttacgggga tggtggggct gcggactcgc aatcacacgg
     5101 tccagcagtt gcatagcttc ctggcccatt tcctcggtga agacgctgat ggaagacagg
     5161 gctggataga cctggcgggt gatggctgtg tcgttaaagg tgatgagttg gactctaccg
     5221 ggcactgcga tttgacgctc ttgtaaagca cgcagggctc cgactgccag ggtatcattt
     5281 gccatgaaaa aggcaggggg tagctggtcg cctaggtcct caatagcctg gctcatcagc
     5341 tcatatcctg attgggtgga aaattttcct tggtagatgt agtcttcttg gagcatgccc
     5401 aaggtgtcta ggtagtcacg aaaggcagtc aggcggggat ctgttggcag ttggtagccg
     5461 tctgtggttt cttcctgtcc aactaggagg ccaatgtctg tcagaccttg agaacggaag
     5521 tggtcgataa cggtctgtac agagtgttca aagtcggtcg tgatacagga gaatccctcc
     5581 gtcagtgtat cagagtccac aaaaatgagc ttggaagaca agttggttag ctctgctatt
     5641 tgcccagaag aaaacttacc aaccgcgatg atgccgtcaa cctcttggag gaggggatgg
     5701 gtcaggtcgt taaaggagcg gatgatttgg tagcccagga ggctggcggt ttgctcgatg
     5761 ctagctcgaa tagaatagta gtagaggtca gccagctctt cgctctcggt gtaccactga
     5821 acaataccga tggtgccttt ttgttgggga gcttgttttt tgaggtgttt ggtgtagccc
     5881 aggtcctgtg ccaagttgaa aatgcggtcg cgggtttctt ggctgacgga tagggtcagg
     5941 tctcccttga gaacgcggga aacggtggca gaggaaaggt gggcttgttt tgctatgtct
     6001 ttgattgtaa ccatgttctt ctcctgttta tttgtctcta gtatagcata aaaaacaaaa
     6061 ttagtaaaaa tttagtaaaa atattgactt ttaaattgtt gagttgtaca ataaaagaaa
     6121 acgattacaa aatctaggag gttcttatga acacagaaca actcaagcag gcctttctcg
     6181 atgtgtttgg tcaagaggca gatgcgactt tcttctcacc aggtcggatt aatttgattg
     6241 gtgagcacac ggactacaat ggtggtcatg ttttccctgc ggctattacc ttggggacct
     6301 acggggctgc tcgcaaacgt gacgaccagc ttttgcgttt ttattctgct aactttgaag
     6361 aacttggaat tatcgaagtg gatttgaaca atctggtctt tgataaggca gataactgga
     6421 ccaactatgc caagggtgtt ctcaaattct tgcaagaagc agggcatgcc attgatacag
     6481 ggatggaagt ctttgtttac ggtaacattc caaatggttc aggcttgtca tcatcagctt
     6541 ccttggaact cttgattggc attatcgcag aagagttgta tggacttgaa ttgactcgac
     6601 ttgatttggt gaaaattggg aaacaaacgg aaaatcactt tatcggtgtc aattctggga
     6661 tcatggacca gtttgcgatc ggtatgggag cagataatcg ggcgatttac cttgatacca
     6721 ataccttgga atatgacttg gtaccgctgg atttagggga ccatgtgatt gtcattatga
     6781 acaccaataa acgccgtgaa ttggcagatt ctaagtacaa tgagcgtcgt gcagaatgtg
     6841 aaaaagctgt ggaagaattg aatgcagtct tgaatattca aactctaggt gaattggatg
     6901 agtggacctt tgaccaatat agttatttga ttaaagatga gaaccgtatc aagcgtgctc
     6961 gccatgctgt cttagaaaat caacggacct tgcaagctcg taaggcttta gaagaaggag
     7021 atttggctac ctttggtcgt ctggtcaatg cttcccatgt ttctttggag catgattatg
     7081 aagtgacagg tctagaattg gataccttgg ctcacacagc ttgggagcaa gaaggagttc
     7141 ttggtgctcg gatgacagga gctggcttcg gcggctgtgg tattgccatt gtccacaagg
     7201 ataaggttga agccttcacg gaaaatgtcg gcaagaccta tactgaagtg gttggctatg
     7261 aaccaagctt ctatgtagcg gagattgctg gaggctctcg cgttttatct cgaaaataga
     7321 ttggagaaat gatggctgga ttggtggatc gttttgttga gcaggttatt gccaacagtg
     7381 attttgagga aatggatgct ctttacctgc acaatcgggt cttggctttg gtgggagacc
     7441 aggttctgac tgttcaaaca gatttagagg acttgattga attaaaagat gaactattgg
     7501 ctcatggagt tcgaactggt tttgtgggtg aattgctgga agagcaggac atggttgggg
     7561 cttgtttgat ggatttgatg acaccaagtc caagtcaggt caatcgtgat ttttggcaga
     7621 cctatcagga cagtccagag caagcgattg gtgacttcta tgaattgagc aagcgcaatg
     7681 actatatcaa gatggctgcg attgcgaaaa atatctatta tcaagtttcg acagagtatg
     7741 gggatttgga aatcacaatc aatctgtcta aacctgagaa ggatcccaag tctattgcag
     7801 ctgctacgaa agctgaagca agcaattatc ccaaatgcct actctgtatg gaaaatgagg
     7861 gctatcaggg tcggattaac catccagcac gcgccaacca ccgcattatt cgcttggagc
     7921 ttggacagga aaagtggggc ttccagtatt cgccctatgc ttactacaat gaacatgcta
     7981 ttttcctaaa tcaggaacat gtgccgatgg tcattagtcc gcgaacattt gagcagctct
     8041 tggacttgtt ggatttgttg ccaggctatt ttgtcggttc caactctgat ttacctatct
     8101 cgggtggctc catcttgacc cacaatcact atcagggtgg gcggcacagt tttgccatgg
     8161 aaaaggcgcc gattgagcgc cagctggtct tcgacggctt tgagtccgtt tcggcaggaa
     8221 ttgtcaaatg gcctatgtcg gtgattcgct tgagttcggc agataagcca tcgcttcttg
     8281 gtttagcgac taagattttg gaaaaatggc ggagctactc agatgataac gttcagataa
     8341 aggctgagac ggatggaact cctcatcata ccatcacccc gattgctcgg aaacgaggag
     8401 atttgtacga gctggatttg gttctccgcg acaatcagac ctcagaagag tttccagatg
     8461 gcatctacca tccacatcca gatgtgcaac atataaagaa agaaaacatc ggcttgattg
     8521 aggtaatggg cttggcgatt ttacctccac gcttgaaggc cgaattggct gaagtagaaa
     8581 aattcttact gggtcaagat agtcaggtgg ctgactatca tcagccttgg gcggaaagcc
     8641 tgaaaacagc tcacccagat gtgacagagg aaactgtcga acaagttgtt cgtgagtcag
     8701 tgggacaaat ttttgcgcgt gtattggaag atgcaggggt ctacaaacga acaccagaag
     8761 gacaggcagc ctttctacga ttcgtagaat ttgtaggttt agcaacataa ttgcaagaaa
     8821 gagtgggacg g
//
LOCUS       DASGBY010000080         8791 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.080, whole genome shotgun sequence.
ACCESSION   DASGBY010000080 DASGBY010000000
VERSION     DASGBY010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8791
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.080"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            184..606
                     /gene="lacA"
                     /locus_tag="U1396_001385"
     CDS             184..606
                     /gene="lacA"
                     /locus_tag="U1396_001385"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HEM5342571.1"
                     /translation="MTIIIGADPAGSKLKDVIKDYLLEKSYDFKDVSDGSDFVDTTLA
                     VVAEVNQQEGNLGIVIDAYGVGPFMTATKVKGMIAAEVSDERSAYMTRGHNNSRIITI
                     GSEIVGEGIAKNIVKGFVEGEYDGGRHQIRVDMLNKMC"
     gene            633..1148
                     /gene="lacB"
                     /locus_tag="U1396_001386"
     CDS             633..1148
                     /gene="lacB"
                     /locus_tag="U1396_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HEM5342572.1"
                     /translation="MKIAIGCDHIVTYEKIAVVDYLKNQGYEVLDFGTYDNVRTHYPI
                     FGKKVGEAVASGQADLGICICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNAN
                     VIGFGGKITGELLMCDIIEAFIKAEYKPTEANKRLIEKIAAVETLNQEQANPEFFTEF
                     LEKWDRGEYQD"
     gene            1158..2090
                     /locus_tag="U1396_001387"
     CDS             1158..2090
                     /locus_tag="U1396_001387"
                     /EC_number="2.7.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016250260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HEM5342573.1"
                     /translation="MILTITLNPSVDIAYQLDTFHLDTVNRVEKVQKTAGGKGLNVTR
                     VLKQIGEDVVATGFIGGEIGSYVKKQLTRNDIKNSFVEIGNETRNCIAVLHDGQQTEI
                     LEQGPTIQEHEALNFIEHLEIILNNVDVVVISGSLPKGLASNYYVQLVELCKKFGIAV
                     VLDCSGEALKNVLESQQKPTVIKPNTEELSQLIGKEVTDDIQELKSVLSGQLFQGIDW
                     IVVSLGAQGAFAKHNDKFYRVRIPKIKVVNPVGSGDSTVAGIAAGLVHALPDAELLKN
                     ANVLGMLNAQEEQTGYVNLENAESLYSQIEVEEV"
     gene            2092..3069
                     /gene="lacD"
                     /locus_tag="U1396_001388"
     CDS             2092..3069
                     /gene="lacD"
                     /locus_tag="U1396_001388"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5342574.1"
                     /translation="MVVTADKRKYMEKVSNEAGIISALAFDQRGALKKMMAKHQAEEP
                     TVEQMEELKTLVSEELTQFSSSILLDPEFGLPASRARDEQCGLLLAYEKTGYDTSSTS
                     RLPDCLVEWSVKRLKEEGADAIKFLLYYDVDGDSYVNLQKQAYIERLGSECQAEGLPF
                     FLEILSYDETIEDNASVEFAKVKPRKVNEAMRVFSDERFGVDVLKVEVPVNMNFVEGF
                     GTGEVVYTKEEAAEYFRQQEASTHLPYIYLSAGVSAKLFQDTLVFAHEAGAKFNGVLC
                     GRATWAGVVPVYIEQGEEAAREWLRSVGRENIEGLDAVLSQTATSWLEK"
     gene            3257..4090
                     /locus_tag="U1396_001389"
     CDS             3257..4090
                     /locus_tag="U1396_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5342575.1"
                     /translation="MFRIIQSLNNNAALVKNEHGEQAVVMGLGITFQKKKGDLIVKDK
                     IENIFSLKNDEAKENFLTLLKDIPLDFISATYTVINHLIETYHYPVQEYLYVTLTDHI
                     YCAYQAVLKNTYQESRLPNISAEYPLEYKMAREALAMFREKLLNDFPNDEIGRIALHL
                     INAKGETIHPTSEEHDISKKIIAEVEQILIENGIKRSKENSNFYDRFMIHLSYFLNYL
                     DRSHQSNESIASLEQYIKLQNPRAHQVGSQIFEMITSLVDEPVNDSERFYIVLHIQRL
                     L"
     gene            4122..4439
                     /locus_tag="U1396_001390"
     CDS             4122..4439
                     /locus_tag="U1396_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5342576.1"
                     /translation="MNREEITLLGFEIVAFAGDARSRLMEALAAAQKGDYAKAEELVE
                     AANACIVEAHHAQTSLLQKEAAGEDLAFSVTLMHGQDHLMTTLLLKDMMGHMIELYKR
                     GDK"
     gene            4439..6118
                     /locus_tag="U1396_001391"
     CDS             4439..6118
                     /locus_tag="U1396_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003048452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIBC"
                     /protein_id="HEM5342577.1"
                     /translation="MNKLIEFIEKGKPFFEKISRNPYLRAIRDGFIAAMPVILFSTLF
                     LMVAFVPNIFGFTWSDEAVAAIMKPYGYTMGIVAVLVAGTTAKSLTDAFNRQLPKTNQ
                     INFISTMIASISGFLLLASDGIEGGFANGYMGTKGLLTAFLAAFITVNIYKVCVKNNV
                     TIRMPDEVPPNVSQAFKDVIPYALSIFVLYGIDLVTRQFLGTNVAEAILKLFEPLFTA
                     ADGYVGITIIFGAYALFWFVGIHGPSIVEPAIAAITYANIETNFQLLQAGQHADKILT
                     SGTQMFIVTMGGTGATLVVPFMFMWLTKSKRNKAIGRASVVPTFFGVNEPILFGAPLV
                     LNPVFFVPFILAPIANVWIFKFFVDTLKMNSFSVNLPWTTPGPLGIVMGTNFAPLAFA
                     LAILLVVVDVLIYYPFLKVYDEQILAEEQSGKVENSLKEKVAANFNTAKADAILEKAA
                     VETEISEQTNVLVLCAGGGTSGLLANALTKAAKEYGVPVTATAGSYGAHREILPEYQL
                     VILAPQVASNYDDMKQETDALGIKLAKTEGAQYIKLTRDGQGALDFVKQQF"
     gene            6353..7759
                     /gene="lacG"
                     /locus_tag="U1396_001392"
     CDS             6353..7759
                     /gene="lacG"
                     /locus_tag="U1396_001392"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HEM5342578.1"
                     /translation="MVKTLPKDFIFGGATAAYQAEGATQTDGKGRVAWDKYLEDNYWY
                     TAEPASDFYNRYPVDLELSEQFGVNGIRISIAWSRIFPTGFGAVNPKGVEYYHKLFAE
                     CHKRHVEPFVTLHHFDTPETLHSNGDFLNRENIEHFVNYAAFCFKEFPEVNYWTTFNE
                     IGPIGDGQYLVGKFPPGIQYDLAKVFQSHHNMMVSHAKAVKLYKDAGYSGEIGVVHAL
                     PTKYPYDPSNPDDVRAAELEDIIHNKFILDATYLGYYSEKTLEGVRHILKVNGGELDL
                     RDEDFAALDAAKDLNDFLGINYYMSDWMRAHDGETEIIHNGKGEKGSSKYQIKGVGRR
                     ESPVDIPKTDWDWIIYPQGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDGTVYDD
                     GRIDYVKKHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERY
                     PKKSAYWYKKVAETQVIE"
     gene            7826..8719
                     /locus_tag="U1396_001393"
     CDS             7826..8719
                     /locus_tag="U1396_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM5342579.1"
                     /translation="MLELKNENLTVQFSEFGGQIISIKDKDGIEYLWQGDPTYWSGQA
                     PVLFPICGSLRNDWAIYEPAERPTFTGTIPRHGLVRKMLFKNVSSTENSLEFSISSNE
                     ETVKNYPFEFELSINYSLLGNTIRTEYQVKNLEGHRKLPYFIGGHPGFNCPLLDGESY
                     EDYYLEFEKVESCTVPRSFPETGLLDLRDRQPFLENQKTLDLSYQLFEHDAITLDQLA
                     SRKVTLKSKNHQKKLSIAFDDFPYLVIWSTTNQSPFIALEPWIGLSTSLEESDIFNAK
                     RSISYVAPKEVDKKHFDIIIE"
BASE COUNT         2806 a         1466 c         1879 g         2640 t
ORIGIN      
        1 gtgttggttt tttgtttgta cacgaaaaaa acaaacaaaa ataaaacaaa atatgttgac
       61 tttgtgtttg tttggttgta taatttaaac ataaaaagca aaaacgcttt ttctaagttt
      121 tgcaaaacaa agattttctg ccaaatatgg ctacaacttt ctatttttgt taggagatag
      181 gttatgacaa tcattatcgg tgctgatcca gcgggttcaa aactaaaaga cgttattaaa
      241 gattatttgc tagaaaaatc atatgacttt aaagatgtca gtgatggaag tgattttgtt
      301 gatacaactt tggcagtagt tgcagaagtt aatcaacagg aaggaaatct tggcattgtg
      361 attgatgctt atggtgttgg tccatttatg accgcaacta aagtcaaagg catgattgct
      421 gcagaagttt cagacgaacg ttctgcctat atgacaagag gacacaacaa ttcgcgtatt
      481 attacaatcg gtagtgagat tgtaggagaa ggaattgcta aaaatatcgt taaaggattt
      541 gttgaaggtg agtatgatgg tggccgtcac caaattcgtg tcgatatgct aaataaaatg
      601 tgctaattgt tgtaaacaaa ggagaataag agatgaaaat tgcaatcggt tgtgaccaca
      661 ttgtaaccta tgaaaaaatc gctgtggtag attatttgaa aaatcaagga tatgaagtgt
      721 tggactttgg gacttatgac aatgttcgta ctcattaccc aatctttggt aaaaaagttg
      781 gcgaagctgt tgcaagcgga caagcagatt tgggtatttg tatctgtgga acaggtgttg
      841 gaatcaacaa tgctgtaaac aaggttcctg gtgttcgatc tgccctggtt cgtgatatga
      901 cctccgcgct ttacgcgaag gaagagttaa acgccaacgt cattggtttt ggtgggaaaa
      961 ttacaggtga gttgctcatg tgcgacatca ttgaagcctt cattaaagca gaatacaaac
     1021 caactgaagc aaacaaacgt ttgattgaaa agattgctgc agttgaaacg ctcaatcaag
     1081 agcaggctaa tccagagttc tttactgaat ttcttgaaaa gtgggatcgt ggagaatacc
     1141 aggactagga ggctcacatg attttaacaa tcactttaaa tccgtcagtt gatattgcct
     1201 atcaattgga tacctttcat ttggatacgg tcaatcgagt agaaaaagtt caaaaaacag
     1261 ctggtggtaa ggggctcaat gttacacgag ttttgaaaca aatcggtgaa gatgttgtag
     1321 caacaggctt tattggcggt gagattggaa gttatgtaaa gaaacaactc actcgaaatg
     1381 atattaaaaa ttcctttgtg gaaattggga atgaaacacg taactgtatt gcggttcttc
     1441 atgatggaca acagacggag attttagaac aaggaccaac tattcaagaa cacgaagcct
     1501 tgaattttat cgaacacctt gaaatcatcc tgaacaatgt agatgttgtt gttatttcag
     1561 gaagtttgcc taagggactt gctagcaatt attatgttca gcttgtagag ctttgtaaaa
     1621 aatttggcat agctgttgtt ttggattgtt ctggtgaggc gctgaaaaac gttttagaaa
     1681 gccagcagaa gccgacagtt attaagccga atacagaaga gttatcacaa ctgattggta
     1741 aagaagttac tgatgatatt caagagttga aatcagtttt gtctggtcaa cttttccaag
     1801 gaattgattg gatagtcgtc tcattagggg cacagggggc ttttgccaag cacaatgaca
     1861 agttctatcg tgtcagaatt ccaaaaatca aagtcgtcaa tccagtagga tcaggagatt
     1921 caactgttgc aggtattgca gcaggtttgg tacacgcttt acctgatgca gaattactaa
     1981 aaaatgctaa tgttttaggc atgttaaatg cccaggaaga acagacgggt tacgtcaatt
     2041 tagaaaatgc agaatcgttg tattctcaaa tcgaagtcga agaggtataa tatggtagta
     2101 acagcagaca aaagaaaata catggaaaaa gtaagcaatg aagcaggtat tatttcagct
     2161 ttagctttcg accaacgtgg agccctgaaa aaaatgatgg caaaacatca ggcagaagaa
     2221 cctactgtgg aacagatgga agaactaaaa actctagttt ctgaagaatt aacacagttt
     2281 tcttcctcaa ttctgttaga tcctgaattt ggtttgccag catcacgggc ccgtgacgag
     2341 cagtgcggtt tgcttttggc ttatgaaaaa actggctatg ataccagctc tactagtcgc
     2401 ttaccagatt gcctagtaga gtggtctgtg aaacgactaa aagaagaagg tgcagatgcc
     2461 attaaattcc tactctatta tgatgtggat ggagattcat acgtcaatct tcaaaaacag
     2521 gcctatattg aacgattggg ttcagaatgt caggctgaag gtttaccatt cttcttggaa
     2581 attttgagct atgatgaaac gattgaagac aatgccagtg tggaatttgc aaaagtcaaa
     2641 cctcgaaaag taaatgaggc tatgagagtt ttttcggatg aacgatttgg agtggatgtt
     2701 ctcaaggtag aagtacctgt gaatatgaat tttgtagaag gctttggaac aggagaagtc
     2761 gtctatacaa aagaagaagc agctgaatat ttccgtcaac aagaagcatc aactcatttg
     2821 ccttatattt atctaagtgc aggtgtttct gcaaaactct tccaagatac tctagtgttt
     2881 gcacatgaag caggtgctaa atttaacggt gttctttgcg gtcgtgcaac atgggcaggt
     2941 gttgtgccag tctatattga acaaggtgaa gaagctgcgc gtgaatggtt acgcagtgtt
     3001 ggtcgtgaaa atatcgaggg acttgatgca gtcttgtctc aaaccgcaac ttcttggcta
     3061 gaaaaataat tgaaaaataa ccattttctt aaaagaaagg gtttacattt tctgagaata
     3121 tgctataata atctcatcag caagaataga gtggattgta actaattcga ttaggcaaga
     3181 ctacaaatgg atttgagagt aggatattct cggtttgttt gtagtctttt tttgcttaaa
     3241 aatataggag ggatatatgt ttaggattat acagtcacta aataataacg ctgccctggt
     3301 gaaaaatgaa catggggaac aggcagtcgt gatgggatta ggtataacct ttcaaaagaa
     3361 gaaaggggat ttaattgtta aggacaagat agaaaatatc ttttcgctaa aaaatgatga
     3421 agccaaagaa aattttctaa ccttattaaa agatattccc ttagatttta tttcggcaac
     3481 ctacacggtt attaatcatc tgatagaaac ttatcattac cctgtacaag aatatctata
     3541 tgtgacactg acagatcata tctattgtgc atatcaggcg gttttaaaga atacttatca
     3601 agaaagtagg ctacccaata tttcagccga atatccattg gaatataaaa tggcgcgtga
     3661 agccttagct atgtttcgtg aaaagttgct aaatgatttt ccaaatgatg agattggtag
     3721 aattgcactt cacttaatca atgcaaaggg tgaaaccatt catcccacta gtgaagaaca
     3781 tgacatcagt aagaaaatta ttgctgaggt tgaacaaatt ttgatagaga atgggattaa
     3841 acgttcaaaa gaaaatagca atttttatga tcgctttatg attcatttgt cctattttct
     3901 gaattactta gatagatccc atcagtcaaa tgaatcgatt gctagtttgg aacagtacat
     3961 caagctccag aatccaagag cccatcaggt tggaagtcag atttttgaga tgattacatc
     4021 attggttgat gagccagtaa atgatagtga aaggttctat attgtactac atattcaacg
     4081 gttattgtaa atcaattcaa ttttaaaagg aggttcatat tatgaacaga gaagaaatta
     4141 ctttattagg ttttgagatt gttgcattcg ctggtgatgc tcgctctcgt ttgatggagg
     4201 cactggctgc tgctcaaaaa ggtgattacg caaaagcaga agaactagtt gaagctgcca
     4261 atgcttgtat tgttgaagcc caccatgctc agacaagttt gttgcagaaa gaagcggctg
     4321 gtgaggattt agcctttagt gtgacgctca tgcatggtca agaccatctc atgacgacat
     4381 tattattgaa agatatgatg ggtcatatga ttgaacttta caaacgaggt gataagtaat
     4441 gaataaattg attgaattca ttgagaaagg gaagcctttc tttgaaaaga tttcgagaaa
     4501 cccttattta agggctatcc gtgatggttt tatcgctgcc atgccggtta tcttgttctc
     4561 aactctcttt ctaatggtag catttgtacc taatatcttt ggatttactt ggtctgatga
     4621 agcagttgcg gctatcatga aaccttacgg ttatacaatg ggtattgtag ctgtcttagt
     4681 tgcaggaacg accgcaaaat ctttgacaga tgcgtttaac cgtcaattgc caaaaaccaa
     4741 tcagattaac ttcatttcaa ccatgattgc ctcaatttca ggtttcttat tactggcttc
     4801 tgatggtatt gaaggtggat ttgccaatgg ttacatggga actaagggac ttttgacagc
     4861 ctttctggca gccttcatta cggttaatat ctataaggtc tgtgtgaaaa acaatgttac
     4921 cattcgtatg ccagacgaag ttccaccgaa cgtatcccag gcatttaaag atgtgattcc
     4981 atatgcattg tctatctttg tcttgtatgg aattgatctt gtgacacgtc aattccttgg
     5041 aacaaacgtt gctgaggcga tcctgaaatt atttgagcct ctatttacag ccgcagatgg
     5101 ttatgttggt attacaatta tctttggtgc ctatgctttg ttctggtttg tagggattca
     5161 tggtccatct attgtggaac cagcaattgc agccattact tatgccaata ttgaaaccaa
     5221 cttccagctt ctacaggcgg gtcaacatgc ggacaaaatc ctgacttcag gtactcaaat
     5281 gtttatcgta acaatgggtg gtacaggtgc taccttggtt gtgccattca tgtttatgtg
     5341 gttgactaag tctaaacgaa ataaagcaat tggacgtgct tcagttgttc caactttctt
     5401 tggtgtaaat gaaccgatct tgttcggtgc accacttgta ctcaacccag tattctttgt
     5461 tccattcatc ttagctccaa ttgctaacgt atggattttc aaattctttg ttgatacgct
     5521 aaaaatgaac agtttcagcg ttaacttgcc atggacaact ccaggaccat tggggattgt
     5581 aatggggaca aactttgctc cacttgcctt tgcactagct atcttattgg tagttgtcga
     5641 tgtacttatc tattatccat tcttgaaagt ttacgatgag cagattctcg ctgaagaaca
     5701 atcagggaaa gttgaaaata gtttgaaaga gaaagtggcg gctaacttta atactgccaa
     5761 agcggatgct attcttgaaa aagctgcagt cgaaaccgaa atttctgaac aaacaaatgt
     5821 tttggtactt tgtgcaggag gtgggacaag cggcttgctt gccaatgctt taacaaaagc
     5881 tgcaaaagaa tacggtgttc cagtcacagc aacagcagga agctatgggg cgcatcgtga
     5941 gattttgcca gagtatcaat tagtcattct agcaccacaa gtggcatcaa actacgatga
     6001 tatgaaacaa gaaaccgatg cattgggtat taaacttgcc aaaactgaag gggctcaata
     6061 cattaaactc actcgtgatg gtcaaggtgc tcttgacttt gtcaaacaac agttttagaa
     6121 cctatattca cagttcagca cttccatcta aggctagtct ttcagctact catcgttagt
     6181 ttttttcaaa atacagtcag tattccctca aaaaactgcc ttgattagcg aaaaactatc
     6241 tcttatatac aagcacttca cttgtgaata caggttctta atcaaaaggg gagggagtta
     6301 tcatctccaa ctcctacccc tttatttatt tttgatagaa gaaggtaggc atatggttaa
     6361 aacattacca aaagatttta tatttggtgg agcaactgct gcatatcaag cagagggtgc
     6421 tacacagacg gatggaaaag gtcgtgttgc atgggacaag tatctagaag ataattactg
     6481 gtacactgcg gaaccggctt ctgattttta taatcgttat ccagttgatt tagaactaag
     6541 tgaacaattt ggggtaaacg gcattcgtat ttcaattgcg tggtctcgta ttttcccaac
     6601 aggctttgga gcagtgaatc caaagggagt agagtattac cataaattat ttgcggaatg
     6661 ccataaacgt catgtagaac catttgtaac gcttcaccat tttgatacac cagaaacgct
     6721 acattctaat ggtgactttc taaatcgaga aaatattgag cacttcgtca attacgcagc
     6781 gttttgcttc aaagaattcc ccgaagttaa ttactggaca acctttaatg aaatcggtcc
     6841 aattggtgat gggcaatatc tagttgggaa gttcccacca gggattcagt atgacttagc
     6901 taaggtattc caatctcacc acaatatgat ggtttcacat gccaaggcag ttaagctcta
     6961 caaggatgct ggttatagtg gagaaattgg tgttgtacac gcattgccaa cgaaatatcc
     7021 ttatgatcca agcaaccctg acgatgtacg tgcagcggaa ctagaagata ttattcataa
     7081 taaatttatc ctagatgcaa catacttggg ttactattct gaaaaaacgc ttgaaggtgt
     7141 tcgacatatt ctgaaagtaa atggtgggga attagacctt cgtgatgaag actttgctgc
     7201 cttagatgcc gcaaaagatt tgaacgactt cttgggcatc aattactata tgagtgattg
     7261 gatgagagct catgatggag aaacggaaat tatccataat ggtaagggtg aaaagggaag
     7321 ttctaagtat caaatcaaag gagttggtcg tagagagtct ccagttgata ttccaaaaac
     7381 ggactgggat tggattatct atccgcaagg cctttatgat caaatcatgc gtgtaaaaaa
     7441 tgactatcca aactataaga aaatctacat cactgaaaat ggtctaggct ataaagatga
     7501 atttgtagat ggtacagtct atgacgatgg tcgaattgat tatgtgaaaa agcatttaga
     7561 agtgatttca gatgctatct cagatggtgc caatgttaaa ggttatttca tctggtcctt
     7621 gatggatgta ttttcttggt caaatggata cgagaaacga tatggtttgt tctatgttga
     7681 ctttgagacc caagaacgtt atccaaagaa aagtgcttat tggtataaaa aagtagcaga
     7741 aacacaggtt attgaataaa aaagtaatac aaggatgctt agctcaagtt agcatccttg
     7801 ttttcatata agggaggcag tttttatgct cgaattaaaa aatgagaact taacagtaca
     7861 attttctgaa tttggtgggc aaattatttc tattaaagac aaggatggta tcgaatatct
     7921 ttggcaaggc gatccgacct attggagcgg tcaagcacca gttctatttc cgatttgtgg
     7981 aagtttacga aatgattggg ctatctatga acctgcagaa agaccgacat ttacaggcac
     8041 aattccaagg catggacttg tgagaaaaat gctgttcaaa aatgtaagta gcactgaaaa
     8101 ctctttagaa ttttctattt catcaaacga agaaaccgta aaaaattacc cttttgaatt
     8161 tgaactttcc attaactact cactacttgg caatacaatt cgaactgaat atcaggtgaa
     8221 aaaccttgag ggacatagaa agctacctta ctttattggg ggtcacccag gttttaattg
     8281 tcccttgttg gatggtgaga gttatgaaga ctattattta gaatttgaaa aagtagaatc
     8341 ttgtacagta cctagaagtt ttccagaaac tggcttactt gatctgcgag accgccagcc
     8401 attcttggaa aatcaaaaaa ccttggactt gtcctatcaa ttgtttgagc atgatgccat
     8461 cacattggat caattagcat cacgaaaggt aaccttgaaa tcaaaaaatc atcagaagaa
     8521 actttcgatt gcatttgatg attttccata tttagtgatt tggtcaacta caaatcagag
     8581 tccctttatc gcattagaac catggatcgg actctctaca tcactggaag aatctgacat
     8641 attcaatgcc aaacgaagta ttagctatgt tgctccaaaa gaagttgata aaaaacattt
     8701 tgatattatt attgagtaaa taccatagtt aagtaattta aatactctac ggaaaacact
     8761 caaaacccca ctggctgaat aagtcagtgg g
//
LOCUS       DASGBY010000081         8778 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.081, whole genome shotgun sequence.
ACCESSION   DASGBY010000081 DASGBY010000000
VERSION     DASGBY010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8778
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.081"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            77..1075
                     /locus_tag="U1396_001394"
     CDS             77..1075
                     /locus_tag="U1396_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5342580.1"
                     /translation="MKVLLYLEGKTVLEKSGIGRALQHQMEALDMAGIPYTTDLLGDY
                     DVIHINTYGPRSWLLLHAAKRSGKKVIMHGHSTKEDFQNSFIGSNTLAPFVGKYLASM
                     YQKADFVITPSEYSKKLIQSYGVTTPIIAVSNGIDLDKYKKDERKEAIFREHFKIEEG
                     QPVVVCAGLYFRRKGIEDFVKVAEKMPHVRFIWLGSINKWLIPSYIRKIVEGDHPANV
                     EFPGYFKGAVFQGAMSGADAFFFPSYEETEGIVVLEALASHQHVVLRDIPVYDGWVDE
                     NVAELGHTVDDFVDSIQKILDKQVDKREAGYQVAVSRSIDNVSHQLVDAYRQVLEM"
     gene            1076..2389
                     /locus_tag="U1396_001395"
     CDS             1076..2389
                     /locus_tag="U1396_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5342581.1"
                     /translation="MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHTVFIFTTTDED
                     VNRYEDWDIIRIPSVPFFAFKDRRVAYAGFTGALKIASRYKLDIIHTHTEFSLGILGK
                     MIAKELDIPVVHTYHTQYEDYVHYIAKGRIIRPGMVKYLVRAFLKDLDGVICPSEIVE
                     DLLMSYNVPISKRVIPTGIDLAKFDRPEIGKDETDELREQLGIASDETMLLSLSRISH
                     EKNIQAIVQAMPKILLENPKVKLVIVGGGPYTDDLQEMIAELNLDEHVQLTGMIAPSD
                     TALYYKAADFFISASTSETQGLTFLESLASGTPILAHSNPYLKNVVTDKMFGTLFVRE
                     QELADAVVEAIVATPPMNPYVLDKKLYEISSTNFGRKVFEYYLDLKISYDFRKEHTNQ
                     DSVAEALIKEAIYLPQKVVVKSTDTTAKILKKSVEQVKSIRNFFD"
     gene            2404..2778
                     /locus_tag="U1396_001396"
     CDS             2404..2778
                     /locus_tag="U1396_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342582.1"
                     /translation="MEKLRKESWKNLAIVALIILSMYAGIYLIAFHLISDTMLSKELV
                     VGNILLYTPIVLFLTGLLYGFFHGFSPSLLALVLLLYPVTIFFFKEWIILYQIVYTLC
                     AMIGNGVGALLFSLRKKMRKNP"
     gene            3251..3436
                     /locus_tag="U1396_001397"
     CDS             3251..3436
                     /locus_tag="U1396_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like protein"
                     /protein_id="HEM5342583.1"
                     /translation="MNRLIMTKRGRYYDEPPYTLKHKMAENIWWLIELADRLDIDIQK
                     EMETFLTQKEELLGIKK"
     gene            3586..5538
                     /gene="thrS"
                     /locus_tag="U1396_001398"
     CDS             3586..5538
                     /gene="thrS"
                     /locus_tag="U1396_001398"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEM5342584.1"
                     /translation="MLKITFPDGAVRDYQAGVTTFEIAESISKSLAKKALAGKFNGKL
                     IDTTRAIEEDGTLEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIKLGVGPAIQDGF
                     YYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALDIFKNDPYKLELIQ
                     EHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLNVAGAYWRGKSENPMMQRVY
                     GTAWFDKKDLKAYLQMREEAKERDHRKLGKELDLFMISQEVGQGLPFWLPNGATIRRT
                     LERYITDKELASGYQHVYTPPLASVELYKTSGHWDHYHEDMFPTMDMGDGEEFVLRPM
                     NCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFVTP
                     EQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEKYYDNDEMWENAQRMLKGA
                     MDEMGVDYFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLLPERFGLTYIGADG
                     EEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPTQVTMIPISVEAHLDYAWKVA
                     KELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQ
                     TQSVSEFVDHILADIARKSRPAEAAE"
     gene            complement(5610..6269)
                     /locus_tag="U1396_001399"
     CDS             complement(5610..6269)
                     /locus_tag="U1396_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5342585.1"
                     /translation="MNYVLELLKPSTFQLLWSGLKLTLYISSISVILSILFGMILAIM
                     RNGKNPIFKWIATIYIEFVRNVPNLLWIFTVFLVFQMKSTPAGITAFTIFTTAAMAEI
                     IRGGLNAIGPGQTEAGLSQGFTPVQIMVYIIMPQAIRKMLPAIISQIVTVIKDTSFLY
                     SVIALQELFGSSQILMGRYFEAEQVFALYIMVALIYFSINFAISSLSRYVAKSWASSI
                     E"
     gene            complement(6284..6982)
                     /locus_tag="U1396_001400"
     CDS             complement(6284..6982)
                     /locus_tag="U1396_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5342586.1"
                     /translation="MTVLTTSPYAWENWVSYFKDFPTFFQGFLFTLAISVGAFIMAMF
                     LGIVFGSLSSSKNKVLKIIARVYVEYYQNTPLLVQFMIVYYGLPLISNYVLMPSIYWT
                     AVICIGLYHGAYIAEVIRAGIEAVPTGQTEAALSQGFTQSETMRIIILPQAIPTILPP
                     LTNQVVNLIKNTATVAIISGADIMFMTKSWSAMNANYIPAFAGAAFLYFIMCFPVASW
                     GRRIEEKNKSAFSH"
     gene            complement(6997..7836)
                     /locus_tag="U1396_001401"
     CDS             complement(6997..7836)
                     /locus_tag="U1396_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5342587.1"
                     /translation="MDKKKINIFFAIRLLVFGLILFVFAKQPVAQTETPASITNSDQV
                     QAIIDRGVLRVGVKQDVPNFGYKNPDTGEFEGMEIDIARKIADELGVDIEFTPVTAQT
                     RGPLLDNGQVDMVIATFTITEERKLLYNFTTPYYTDAVGFLVNKDSGIKTFTDLDGKT
                     IGVAQGSITRTLISKLADKYGISVNFAELGSYPELSVSLRAHRTDAFSVDQSILSGYI
                     SSKSELMDFSFSASDYGIVTKLSNKDLNNYLNSLVEKWTADGSLQSIYDANGLKPVTE
                     TDE"
     gene            complement(7847..8608)
                     /locus_tag="U1396_001402"
     CDS             complement(7847..8608)
                     /locus_tag="U1396_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5342588.1"
                     /translation="MALVEFKDVNKYYGDYHALRNINLEFEPGQVVVLLGPSGSGKST
                     LIRTINGLEAIDEGTLIVNGHDISSTSIKELVSLRKEVGMVFQHFNLYPHKTVLENVT
                     LAPIKVLGIDKATAEKTAQKYLEFVNLWDRKDSYPAMLSGGQKQRVAIARGLAMKPEL
                     LLFDEPTSALDPETIGDVLAVMQKLARDGMNMIVVTHEMGFAREVADRIIFMAEGEVL
                     VDTTDVNGFFDNPTEPRAQQFLSKIINHESDKVKL"
BASE COUNT         2592 a         1682 c         2017 g         2487 t
ORIGIN      
        1 ctttaattga tacaaaattc gtgtagaata cagtttaaaa tatgaaaaaa atgtaaaaaa
       61 gggctataat ggtattatga aagtactatt gtatttagaa ggtaaaactg ttttagagaa
      121 atcaggaatt ggccgggcac ttcaacacca gatggaagcg ctagatatgg caggcattcc
      181 ttatacaaca gacctgttgg gagattacga tgtcattcat atcaatacct atggtccacg
      241 ctcctggtta ttgctacatg cagccaaacg gagtggaaaa aaggtaatca tgcatggaca
      301 ttccacgaag gaagattttc aaaattcctt tatcggttcg aataccctag ctccttttgt
      361 agggaaatat ctagcaagca tgtaccaaaa ggcagacttt gtcatcactc cttcagagta
      421 ttcaaaaaaa ctcatccagt cttacggtgt gacaacgcca attatagccg tttcgaatgg
      481 tattgattta gataaatata agaaggatga acgcaaggaa gcaatctttc gagagcattt
      541 taaaattgaa gaagggcagc cggttgttgt ctgtgcagga ctctacttcc gacgtaaagg
      601 aattgaagac tttgtcaagg tagccgaaaa gatgccgcat gtccgcttca tttggctcgg
      661 ttcaatcaat aagtggctga ttccgtcata tattagaaaa attgttgagg gagatcatcc
      721 agcgaatgtc gagtttccag gttattttaa aggtgctgtt tttcaaggtg caatgagcgg
      781 agcggatgcc tttttcttcc catcgtatga ggaaacagaa gggattgttg ttctggaagc
      841 tcttgctagt catcagcatg ttgttctaag agatattcca gtttacgatg gttgggttga
      901 cgaaaacgtt gccgaattgg gacatacagt ggatgatttt gtcgattcta ttcagaaaat
      961 cttagacaag caggttgata aacgtgaggc gggctaccag gttgcggtta gtcgctcgat
     1021 tgacaatgtt tcccaccaat tggtggatgc ctatcgacaa gtattggaga tgtaaatgcg
     1081 gattggattg tttacggata cctattttcc acaggtttca ggagtcgcga cttcgattcg
     1141 gactcttaag acagagttgg agaaattggg acatacggta tttattttta cgacgacaga
     1201 tgaggatgtg aatcgctacg aagattggga cattatccga attcctagcg tacctttttt
     1261 tgcctttaaa gatcgtcgag tggcctacgc aggttttaca ggtgccttaa aaattgcaag
     1321 tcgctataaa ctagatatta ttcatactca tacagaattt tctttgggga ttttggggaa
     1381 aatgattgcc aaggaactag atattccggt ggtacatact tatcacaccc agtatgaaga
     1441 ctacgtacac tatattgcca agggtaggat tattcgtccc gggatggtta aatatttagt
     1501 acgggcattt ttaaaagatt tggatggggt aatttgtcct agtgagattg ttgaagatct
     1561 tttaatgagt tacaatgttc cgatttctaa acgagtaatt ccgacaggaa ttgacttggc
     1621 aaagtttgat agaccagaaa ttggcaagga tgaaacagat gagttgcggg aacagctagg
     1681 aattgctagt gatgaaacga tgttgttaag tctgtctagg atttctcacg agaagaatat
     1741 ccaagcaatc gttcaggcaa tgccaaaaat tttgctagaa aatccaaagg tgaagttggt
     1801 cattgtcgga ggtggacctt atacagatga tcttcaggaa atgatagcgg agcttaatct
     1861 agatgaacac gtccagttga cgggaatgat tgcaccaagt gatacagcac tttattataa
     1921 agctgcggat ttctttattt ctgcttcgac cagtgaaaca cagggactaa ctttcttaga
     1981 aagtttagct tctggaactc ctattttggc acatagcaat ccctacttaa aaaatgttgt
     2041 aacagataag atgtttggga cactcttcgt tcgagaacag gagttggcag atgccgtcgt
     2101 tgaggcgatt gttgctacac caccaatgaa tccgtatgtg cttgataaga agctctatga
     2161 gatttcttct acgaattttg ggcgcaaggt ttttgaatat tatctagatt tgaagatttc
     2221 gtatgatttt agaaaagaac atactaatca agatagcgta gcagaagcat tgataaaaga
     2281 ggctatttac ctaccgcaaa aagtagtagt taaatcaaca gacacaacag caaaaatatt
     2341 gaaaaaatca gtcgaacaag taaaatcaat ccggaatttc tttgattaat ttggaggttt
     2401 caaatggaaa agcttcggaa agagagttgg aagaatctgg ctatagtagc ccttattata
     2461 ctatccatgt atgcaggtat ttatctgatt gcctttcatc tgattagtga caccatgctt
     2521 tctaaggaac tggtggtcgg gaatatattg ctctatactc ccattgtact attcctaaca
     2581 ggtcttcttt atggattttt tcacggcttt tctcctagcc ttcttgcctt ggttttactg
     2641 ctttatcctg taaccatctt tttctttaag gaatggatta ttctctatca gattgtctac
     2701 accttatgtg ctatgattgg aaatggggta ggagctctgc tattttctct aagaaagaaa
     2761 atgaggaaaa atccttgaaa aatcaggaaa tcctgttata atagctttta gagacttatc
     2821 aattctagga aatctttgag agagtgtgcg gtgggtgcaa gcacatagag gataggattg
     2881 acactactca gtatgatttt atgcaaacat aaaagggtgg ttcccttatc accaatctga
     2941 ggtagtcagg ctttttagcg tgactgcgaa tgaaggtgga accacgttac gacgtccttt
     3001 tgtgagggtg tcgtattttc ttttttgaca aaacaaggag atgaacatgc ctgttcttcc
     3061 aaaagaaacg cttgaacgct gccgaaccat tcgcaaggct tacagagagt tagaggtcaa
     3121 gcaccacgac aaagagtggt ccattgagga gtgaaacagt ctggggatag actgtttcag
     3181 ctcaacaact taaaataaag atttgttgac aaactctttt ctatttgttg agttctttct
     3241 cactcccaac atgaaccgcc tgattatgac caagcggggt cgttactatg atgaaccgcc
     3301 ctataccttg aagcataaaa tggctgaaaa tatctggtgg ttgatcgaac tggctgaccg
     3361 actggatatt gatattcaaa aagaaatgga aaccttttta actcagaaag aagagttatt
     3421 ggggattaaa aaataaaaat agaaaggact agggtctccg tatttggttg aactgaatac
     3481 gggctacgga ctgggccaaa aagataaacg agaactggac gcttgcatcg tcgttctgtt
     3541 tcctattttg tctgtgtccg cttaacgccc tttatatctt atattatgct taaaattact
     3601 ttcccagatg gtgctgttcg tgactaccaa gctggtgtga ctacttttga aattgcggag
     3661 agcatcagca agtctttggc gaaaaaggct cttgctggta agtttaatgg taaattgatt
     3721 gacacaactc gtgccattga agaggacggt acacttgaaa tcgtaacgcc cgatcatgag
     3781 gatgccttgg acatcttgcg tcactcagct gcccacttgt ttgcccaggc ggctcgtcgt
     3841 cttttccctg acatcaagtt gggggttggt ccagctattc aggatggttt ctactatgat
     3901 acggacaatg cggctggtca gatttcaaat gaagacctgc cccgcattca ggaagaaatg
     3961 atgaagattg tcaaggaaaa cttcccttct gaacgccgtg aggtgactaa ggaagaagca
     4021 cttgacattt tcaaaaatga tccatacaag ttggaattga ttcaggaaca ttctgacgat
     4081 gagggtggtt tgaccattta tacccaaggt gaatacgttg acctctgccg tggcccacac
     4141 gttccgtcaa caggccgtat ccagattttt gaattgctca acgtggctgg tgcatactgg
     4201 cgtggtaaga gcgaaaatcc aatgatgcaa cgtgtgtatg gtacagcttg gtttgacaaa
     4261 aaagatctca aagcatatct gcaaatgcgt gaagaggcca aagaacgtga ccaccgtaaa
     4321 cttggtaagg aattggatct tttcatgatc agccaagaag ttggtcaagg cttgccattc
     4381 tggttgccaa atggagcgac catccgtcgt accttggagc gttacatcac agataaagag
     4441 ttggcttcag gttaccagca cgtttatacg ccaccattgg cttctgtcga actctataag
     4501 acctcaggtc actgggatca ttaccatgaa gatatgtttc caaccatgga catgggtgac
     4561 ggtgaggagt ttgtgcttcg tccgatgaac tgtccgcacc acatccaagt ttataagaac
     4621 catgttcgtt cataccgtga attgccagta cgtatcgctg agcttggtat gatgcaccgc
     4681 tatgaaaaat ctggtgcatt gactggtttg caacgggtgc gtgagatgac cctcaacgac
     4741 ggtcatatct ttgtcacacc tgagcaaatc caagaagagt tcaaaaaagc tctccagttg
     4801 atcatcgatg tgtacgcaga tttcaaccta aatgactacc gtttccgcct gtcttatcgt
     4861 gacccagagg acaaagagaa gtactatgac aacgatgaga tgtgggaaaa tgcccaacgc
     4921 atgttgaaag gtgccatgga tgaaatgggc gtagactact ttgaggctga gggtgaagct
     4981 gccttctacg gtccgaaatt ggatatccaa gtgaaaacgg cccttggtaa cgaagaaacc
     5041 ctgtcaacca ttcagttgga cttcctcttg ccagaacgct ttggtttgac ttatattggt
     5101 gctgacggtg aggaacaccg cccagttatg attcaccgtg gtgttatctc gactatggaa
     5161 cgcttcaccg ctatcctgat tgaaacctac aagggtgcct tcccaacctg gttggctcca
     5221 acccaagtga ctatgattcc aatctctgtg gaagctcact tggactacgc ttggaaggtt
     5281 gcaaaagaat tgcaagaccg cggtgtgcgc gtacacgtgg atgagcgtaa cgagaagatg
     5341 cagtacaaga ttcgtcagag ccagaccagc aagattccat accaactcat cgtcggtgac
     5401 aaggaaatgg aagacaatgc tgtcaacgtt cgtcgctacg gaagtaaggc aacacaaact
     5461 cagtctgtat cagaatttgt ggatcatatc ctagcagata ttgcccgcaa gtcacgtcca
     5521 gctgaagcag ctgaataaat aaagcaagaa gtccgaaagg gcttcttttt tgacagcaaa
     5581 aactcccaac cgattggctg ggagaaattt cattctatac tgctcgccca agacttagcc
     5641 acataacgtg acaggcttga aatagcaaag ttgatactga agtaaatcag ggcaaccata
     5701 atgtagagag caaagacttg ctccgcctca aagtagcgtc ccatgaggat ttgactcgaa
     5761 ccgaagagtt cttgcaaagc gataacggag tataggaaac tggtatcctt gataaccgtc
     5821 acaatctgag agatgatggc gggcagcatc ttgcgaatgg cctgtggcat gatgatatag
     5881 accatgattt gcactggggt aaaaccctgt gacaaaccag cttcggtctg gcccggtccg
     5941 atggcgttga gaccaccacg gataatctcg gccatggctg ccgtggtaaa aatagtaaaa
     6001 gcagtaatac cagcaggcgt tgacttcatt tggaagacta agaagacggt gaaaatccag
     6061 agcaagtttg gtacatttcg cacaaactcg atatagatag ttgcaatcca cttgaaaatt
     6121 ggattttttc cattgcgcat gatggcgaga atcattccga aaagaatgga caggattacc
     6181 gaaatgctag agatataaag ggttaacttc aaaccactcc acaagagttg gaaggttgaa
     6241 ggtttgagta attctaaaac ataattcatc gttcaacctc cttctagtgt gaaaaagctg
     6301 acttattctt ttcttcaatg cgacgtcccc agcttgcaac agggaagcac atgatgaagt
     6361 aaaggaaagc agcaccagca aaggctggga tgtagttggc attcatggca gaccaagatt
     6421 ttgtcataaa cataatatca gctccagaga taatggcaac agtagccgta ttcttaatta
     6481 agtttactac ttggttggtc aaaggtggaa gaatggtcgg aatggcctgt ggtaaaatga
     6541 tgattcgcat ggtttcagac tgagtaaatc cttgtgaaag tgcagcttct gtttgaccag
     6601 ttggcacagc ctcaatccct gcacgaatga cctctgcgat ataagcaccg tgatagagtc
     6661 cgatgcagat aacagctgtc cagtagatgg atggcatgag aacataattt gaaatcagtg
     6721 gaagtccata ataaacaatc atgaactgaa ccaaaagcgg cgtgttctga tagtattcaa
     6781 catagacacg tgcgatgatt tttaaaactt tatttttact tgaagagaga ctaccaaaga
     6841 caattcctaa aaacatggcc atgataaagg caccgacaga aatggctaag gtaaagagaa
     6901 aaccttggaa aaaggttgga aaatccttga aataactgac ccaattctcc caagcgtaag
     6961 gactagttgt taaaactgtc atattgtttc acctttctat tcgtcagttt ctgtgactgg
     7021 tttgagacca ttggcatcat agatgctttg taggctacca tcggcagtcc atttttctac
     7081 gagactattt aagtagttgt taaggtcttt gttagataat ttagtaacaa ttccatagtc
     7141 agaagctgag aagctaaagt ccatgagttc agatttagag ctgatatacc cagaaaggat
     7201 agattggtct actgaaaatg cgtctgtacg gtgagcacgt agcgagacag agagttctgg
     7261 ataagaacca agctctgcaa aattgacaga gataccatat ttgtctgcta gtttagagat
     7321 gagggtacgt gtaatggaac cctgagctac accgattgtc tttccatcca ggtcggtaaa
     7381 tgtcttaatt ccactatcct tattgaccaa gaagccaacg gcatctgtgt agtaaggagt
     7441 tgtgaaattg tagaggagtt tacgttcctc agtgatagtg aaggttgcga tgaccatatc
     7501 cacttgaccg ttatctaaga gtggtcctcg ggtttgcgct gtaacgggag taaattcgat
     7561 atctacacct aattcatctg caattttacg agcaatatca atctccattc cctcaaattc
     7621 accagtatca gggttcttgt agccaaagtt tgggacgtcc tgtttcactc cgactcggag
     7681 aacgcctcta tcgatgatag cttgaacttg atcactattg gtaatggatg cgggtgtttc
     7741 tgtttgagct actggttgtt ttgcgaaaac gaaaagaata agtccaaaga ccaataatct
     7801 aattgcaaag aaaatgttga tttttttctt atccatagac ttcctcctag agttttactt
     7861 tgtcagattc gtggttgata atcttgctga ggaattgttg ggcacgaggc tctgtcggat
     7921 tgtcaaagaa gccatttaca tctgttgtat caactaaaac ttctccctca gccatgaaga
     7981 tgatgcgatc agctacttca cgggcaaagc ccatttcgtg tgttacgaca atcatgttca
     8041 tcccgtcacg tgccaatttt tgcataactg caagtacatc gccgatagtt tctgggtcca
     8101 aagcagatgt tggttcatcg aagagtagaa gctcaggttt catagctaag ccgcgagcga
     8161 tggcgacacg ttgtttttgg cctccggata gcatagcagg gtaggaatcc ttccgatccc
     8221 agaggttaac aaactcgagg tatttttgag cggttttttc agccgtagct ttatcgattc
     8281 ccaaaacctt aataggtgcc aaagtaacat tttctaacac ggttttgtgt gggtaaaggt
     8341 tgaaatgctg gaaaaccatg ccaacttctt tgcgaagtga tacgagctct ttgatagaag
     8401 tagaggaaat atcatgtcca ttgacgatga gcgttccttc atcaattgcc tctaaaccgt
     8461 taatcgtgcg aatgagagta gattttccgg atccggaagg tccaaggaga acgacaacct
     8521 gtccaggttc gaattccaag ttgatattgc gtagggcgtg gtagtcgcca tagtatttgt
     8581 tgacatcttt aaattctact aaagccataa aattctcctt gcatagtgtt ttttaggtat
     8641 tcccatctta gcattgccta tatacaatgt caagtaaatt ctgacaattt aatgtgttgt
     8701 atgttacaaa atatgacata gctgtgtcag atggttttga aatatgaatt ttttaggtaa
     8761 gtctgatata atagaaga
//
LOCUS       DASGBY010000082         8699 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.082, whole genome shotgun sequence.
ACCESSION   DASGBY010000082 DASGBY010000000
VERSION     DASGBY010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8699
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.082"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            92..1012
                     /locus_tag="U1396_001403"
     CDS             92..1012
                     /locus_tag="U1396_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5342589.1"
                     /translation="MKTSKLQQAGLVDRIKQQKLLLLMLLPGLVLTFIFRYIPMYGVL
                     IAFKDYNPLKGVLGSEWIGFEEFTKFLSSPNFGTLLANTLKLSVYGLLLGFLPPIILA
                     IMLNQLLSDKAKKRIQLVLYAPNFISVVVIVGMIFLFFSVGGPVNSILGMFGIEANFL
                     TDPDFFRPLYILSGIWQVMGWASTLYTATLVNVDPALIEAAKLDGANIFQRIWHIDLP
                     ALKPVMVIQFILAAGGIMNVGYEKAFLMQTSLNLTSSEIISTYVYKIGLVSGDYSYST
                     AVGLFNALINIILLIAVNKIVKRINDGQGL"
     gene            1022..1909
                     /locus_tag="U1396_001404"
     CDS             1022..1909
                     /locus_tag="U1396_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5342590.1"
                     /translation="MNTQMYTKFDKRMLIVNKILLAFLVLITVVPMVYILVASFMDPQ
                     ALVSKGISFNPKDWTVEGYQRVFSDKSILRGFFNSLFYSFSFAFVTVAISVMTAYPLS
                     KKDLVGKKWINAFLVFTMFFGGGLVPTYLLVKDLGMLNTVWAIIIPGAVNVWNIILAR
                     TYFQGLPDELVEAAVMDGANEFQIFWKIMIPLAKPIMFVLFLYAFVGQWNSYFDAMIY
                     IKDPDLEPLQLVLRKILIQSEPAKDMIGAQAAMNEMKRIAEMIKYATIVISSLPLIVM
                     YPFFQKYFDKGIMAGSLKG"
     gene            2109..3719
                     /locus_tag="U1396_001405"
     CDS             2109..3719
                     /locus_tag="U1396_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5342591.1"
                     /translation="MKHKFGKTVVTLLASTVLLAACGSKNTASSPDYELKDVQFPLEK
                     SVTLKFMTASSPLAPADPNDKLIFQRLEEETGVHIDWTNYQSDFGEKRNLDIASGDLP
                     DAIHNDGASDVELMNWAKQGVIVPVEDLIDKHMPNLKKILDENPEYRSMITAPDGHIY
                     SFPWIEELGEGKESIHTVNDIAWINKEWLNKLGLEMPKTTDDLIKVLEAFKTQDPNGN
                     GKADEIPMSFVNGNGGEDFKILFGAFGVGDNDDHIVVNNDGTVDFTADNEDYKEGVEF
                     MRTLQEKGLIDPEAFEQDWNTYLAKGSENLYGVYFTWDKANITGMNETYDILPVLAGP
                     DGTKHITRTNGMGFQRDRMVITSANKNLELTAKWIDAQYKPIQSVQNNWGTYGDETQQ
                     NIFEYDAATDSLKHLPLNGTAPGELRQKTEVGGPLAILDEYYGTVTTMPDDAKWRLDL
                     MHATYLDYVTNNDIYPRVFMEQEDLDKIAQVEADMNDFIYRKRAEWIVNGGIEEEWDS
                     YLKELESYGLSDWLAIKQKYYDQYKENQ"
     gene            3737..5095
                     /locus_tag="U1396_001406"
     CDS             3737..5095
                     /locus_tag="U1396_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HEM5342592.1"
                     /translation="MKTVVEANQFIQTEKGNVNPIFKPQAHLTPETGWINDPNGFIYF
                     RGEYHLFYQFNPYESVWGPMHWGHAKSKDLVNWEQLPVALAPDKAYDKDGCFSGSAIV
                     KDDVLWLMYTGHINNEDGTVSQVQNMAFSTDGIHFEKIEQNPVATADGLPEEVIANDF
                     RDPKIFEKDGHYYSVVATKHKDNVGCIVLLSSPNLTDWKFESIFLKGEANQGFVWECP
                     DYFEVDGQEYLIISPMRYQKDGNDFININSNIFVTGHVDWDKKVFVAESFKEIDHGHD
                     FYAAQTTEGPEGERVMIAWMHTWGRPLVTNDLGHKWYGQMTLPRLLKQGENGLRQVLP
                     AGILNSFDDIEIGQVIQGPSKLSLKLGDSLDLKLGTDQDYLQFGYDKAKQEVYIDRSS
                     LKIQQVGEEEWSTVRRAVTVQATELEVLVDTNCLEIFINDGQETLTSTFYVEGQIILN
                     AL"
     gene            5221..7590
                     /locus_tag="U1396_001407"
     CDS             5221..7590
                     /locus_tag="U1396_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM5342593.1"
                     /translation="MRKTSKKGKATRRPTKAELAQQERVKNITLRVLGLLFIAFAASR
                     LGVFGVTSYNIFRLLFGSLAYLLLAGAFIYLLIPKVLREREGTISGFWLIVIGLLIEF
                     QAYLDWTYQGSDLFGHTLKLALSDLAKFQVTAFLGGGMIGSIFYLPVSFLFANVGSFF
                     IGLLVIAFGIFFVSPWSVYDVADGLAVAKDKLVETQVKRAELRTQKKAEREEKRQQEL
                     ARLEEERLRLEEEEESARALALVDRHVDLETGEILEEEPVQVPIISEYDHLDIEDEFP
                     IMLAEDDQPAQSNSASQASESNEFEKDETDVQIDFKPKQRLAYKLPSIDLFAPIKAKS
                     QSNEKRIVRQNIKVLEDTFASFGIKVVVERAEIGPSVTKYEVKPAVGVRVNRISNLAD
                     DLALALAAKDVRIEAPIPGKSLVGIEVPNSEVATVPFRELWEQSKTDPDKLLEIPLGK
                     AVNGSVRSFNLARMPHLLVAGSTGSGKSVAVNGIISSILMKAGPDQVKFMMIDPKMVE
                     LSVYNDIPHLLIPVVTNPRKAARALQKVVDEMEKRYELFSQIGVRNLEGYNAKVEEFN
                     SRSEEKQIPLPLIVVIVDELADLMMVASKEVEDAIIRLGQKARAAGIHMILATQRPSV
                     DVISGLIKANVPSRIAFAVSSGTDSRTILDENGAEKLLGRGDMLFKPIDENHPVRLQG
                     SFISDDDVEAIVGFIKDQADADYDESFDPGEVAEGDGDAGFGDAGGDPLFNEARALVV
                     ETQKASASMIQRRLSVGFNRATRLMEELEAAGVIGPAEGTKPRKVLETQ"
     gene            7590..7976
                     /locus_tag="U1396_001408"
     CDS             7590..7976
                     /locus_tag="U1396_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002931159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5342594.1"
                     /translation="MKFDAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDIL
                     FNVKKGNLILEIFIKPDAPMRPVMPNPEHTGLRHLAFQVADVEACLEEFDRLDIRHEV
                     LRTDDFDGKKMAFFFDPDGLPLEIHE"
     gene            complement(8345..8698)
                     /locus_tag="U1396_001409"
     CDS             complement(8345..8698)
                     /locus_tag="U1396_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012130535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 domain-containing protein"
                     /protein_id="HEM5342595.1"
                     /translation="MFLKIVAFLFIFLTLAISIIAVKFFRLQNRGWNFADIAFPLYAI
                     EFYLISDKAYYNSLLPQLVLALSLLAIGLCGFFLLKKKNFLYRRFFKVFWRASFILTF
                     LMYLALVIAVFTLKS"
BASE COUNT         2582 a         1792 c         1914 g         2411 t
ORIGIN      
        1 atttttacaa gaaaaatgaa acgtttcaaa aagaggttca catcctcttt ctaaaatcaa
       61 taaatttgaa acgtttcaaa aaggagttct tatgaaaaca tcaaaactgc aacaagctgg
      121 gctcgtggat cgaatcaagc aacaaaaact cttgttactg atgttactac caggcttggt
      181 cttgactttc atcttccgtt acattcctat gtacggagta ctgattgcct ttaaagacta
      241 taatccttta aaaggggtgc ttggtagtga gtggattggg tttgaagagt ttaccaagtt
      301 tctttcctct ccaaatttcg gcaccttact tgccaacacc ttgaaattga gtgtctacgg
      361 tctgctctta ggatttcttc caccaattat tttggccatc atgctcaatc aactattgag
      421 cgataaggct aaaaaacgga ttcagttggt gctctacgct ccaaacttta tctcagtcgt
      481 tgtcatcgtc ggtatgattt tcctcttctt ctcagtagga ggaccggtta attccatcct
      541 aggtatgttt ggcattgaag ccaacttcct gacagaccca gacttcttca gacccctcta
      601 catcctcagt ggtatttggc aggtaatggg ctgggcatcg actctttaca cggctacctt
      661 ggtcaatgtt gatccagcct tgattgaagc ggctaagcta gacggtgcaa atattttcca
      721 acgaatctgg catattgact taccagcact aaaaccagtt atggtcattc agtttatctt
      781 agcagctgga ggtatcatga acgtggggta cgaaaaagcc ttcttgatgc agacctccct
      841 caacctaacc agttctgaaa tcatttcaac ctatgtctat aaaatcggtt tggtgtcagg
      901 tgactactct tattcaacag cggttggctt atttaacgca cttatcaata ttatcctgct
      961 gattgcagtt aataagattg tcaaacgcat taacgacgga caaggcttat aggaggttcg
     1021 tatgaataca caaatgtaca caaaatttga caagcgaatg ctgattgtca ataaaatctt
     1081 gctggcattt cttgttctca taacagttgt gcctatggtc tatatcctag tcgcttcctt
     1141 catggatccg caggctttgg tcagcaaggg cattagcttt aatccaaagg actggacagt
     1201 agaaggttat caacgggtat tttcagacaa gtctatccta cgcggatttt tcaactccct
     1261 cttttattcc ttctcctttg ccttcgtgac cgtggctatc tcagtcatga ctgcctaccc
     1321 gctctctaaa aaagatttgg tcgggaaaaa atggattaat gcctttctcg ttttcaccat
     1381 gttcttcggt ggcggacttg ttccgaccta tctcttggtt aaagatttgg gaatgttgaa
     1441 tactgtctgg gccattatta ttcctggtgc agtcaatgtg tggaatatca tcttggcacg
     1501 gacctatttc caaggcttgc cagatgagtt ggtagaagca gcggttatgg acggtgccaa
     1561 tgaatttcag attttctgga aaatcatgat tccattagct aagccaatca tgtttgtact
     1621 tttcctatat gcctttgtcg gtcaatggaa ttcttacttt gatgccatga tttacatcaa
     1681 ggacccagac ttggagccac tccaacttgt gctacgtaaa atcctcattc aaagcgagcc
     1741 tgctaaggac atgattggtg cccaggctgc catgaatgaa atgaaacgaa tcgcagaaat
     1801 gatcaagtat gcgaccattg tcatctctag cttgccactc attgtcatgt atccattctt
     1861 ccagaaatac tttgacaagg ggatcatggc tggttcatta aaaggttaat aaatatcttt
     1921 cattttctct tttcttacgt cgacgaaaga ggaaacttcg tttccttatc tccagcttca
     1981 aataatcatg tattatttga actcgctatg ccgtacttca gtacagcctt cagctcgttg
     2041 cctagtaata aaaggaaact gaaagatatt ctaaaaaatc aatttacaaa tataggaggt
     2101 tgtttctgat gaaacacaaa tttggaaaaa cagttgttac gcttctagca agtaccgttt
     2161 tattggctgc ttgtggctca aaaaatactg cttcaagccc agattatgaa ttgaaagatg
     2221 ttcaattccc gcttgaaaaa tcagttacgc ttaagtttat gacagctagc tcccccctag
     2281 ctccagcaga cccaaatgat aagttgattt tccaacgtct tgaggaagaa acaggtgtgc
     2341 atatcgattg gacaaactac cagtcagact ttggtgaaaa gcggaacttg gacattgctt
     2401 caggtgattt gccagatgcc atccataacg acggggcttc tgatgtggaa ttgatgaact
     2461 gggcaaaaca aggggttatc gtaccagttg aagacttgat tgataagcat atgccaaacc
     2521 ttaagaaaat tttggatgaa aatccagaat accgttcaat gattacggct ccagacggcc
     2581 atatctactc attcccatgg attgaagaat tgggcgaagg taaggaatca atccacactg
     2641 ttaacgatat tgcttggatc aacaaagaat ggttgaacaa actcggtctt gaaatgccaa
     2701 aaacaacgga tgacttgatt aaggtccttg aagccttcaa gacccaagat ccaaacggaa
     2761 atggcaaggc ggatgaaatc ccaatgtcct ttgtcaacgg taacggcggc gaagacttca
     2821 agattctctt tggtgccttc ggtgtcggtg acaacgatga ccatatcgtc gtaaacaatg
     2881 acgggaccgt tgactttaca gcggacaatg aagattacaa agaaggtgtt gagttcatgc
     2941 gtacccttca agaaaaaggc ctcattgacc cagaagcctt tgagcaagac tggaatacct
     3001 acttggcaaa aggaagtgaa aacctctatg gtgtgtactt cacatgggac aaggccaaca
     3061 tcactggtat gaatgagacc tatgacatct tgccagtatt ggcaggtcct gatggaacca
     3121 agcatatcac tcgtacaaac ggtatgggct tccaacgtga ccgcatggtc atcacatcag
     3181 ctaataaaaa cttggaattg actgctaaat ggattgatgc ccaatacaaa ccaatccagt
     3241 ctgttcaaaa caactggggt acctatggtg atgaaaccca acaaaacatc ttcgaatatg
     3301 atgcagctac agatagcttg aaacacttgc cgttgaacgg tactgcaccg ggcgaattgc
     3361 gtcagaagac agaagttggt ggaccactgg ctattcttga tgaatactat ggtactgtaa
     3421 caaccatgcc agacgatgcg aaatggcgtt tggacttgat gcacgcaacc tatcttgact
     3481 atgtgaccaa caatgacatc taccctcgtg tcttcatgga acaagaagat ttggacaaga
     3541 ttgcccaagt tgaagcagat atgaacgatt tcatctaccg taaacgtgca gaatggattg
     3601 taaacggcgg tatcgaagaa gagtgggata gctacttgaa agaattggaa agctatggtc
     3661 tttctgactg gttagctatc aagcaaaaat actacgatca gtataaagaa aatcagtaat
     3721 caaaaggagg ctgcctgtga aaacagtagt agaagccaat caatttattc agacagaaaa
     3781 aggaaacgtc aatccgattt tcaaaccgca agcccattta acaccagaaa caggctggat
     3841 aaacgacccc aatggattta tctacttccg tggagaatac catttgttct accaattcaa
     3901 cccttacgaa agtgtttggg ggccgatgca ctggggtcat gcgaaaagta aggacttggt
     3961 caactgggaa cagcttccag ttgccctagc tcctgataaa gcttacgata aagacggctg
     4021 tttctcgggc tctgccattg tcaaagatga tgttctatgg ctcatgtata ccggtcatat
     4081 caacaatgaa gacgggacag ttagccaagt tcagaacatg gccttctcaa ctgacggtat
     4141 tcactttgaa aaaatcgagc agaatccagt cgcaacagca gatggactgc cagaagaagt
     4201 gattgccaat gacttccgcg atccgaagat ttttgagaaa gatggtcact actactctgt
     4261 tgtcgcaacc aagcacaagg ataatgtcgg ctgtatcgtc ttactcagct ctcccaacct
     4321 gacggattgg aaatttgagt ctatcttctt gaaaggtgag gccaaccaag gctttgtctg
     4381 ggaatgtcct gactactttg aagtggacgg tcaagagtac ctgattatct ctccaatgcg
     4441 ttaccaaaaa gacgggaatg actttatcaa tatcaactcc aatatctttg tgacgggtca
     4501 tgtggactgg gacaagaaag tctttgtagc agaatccttc aaggaaatcg accatgggca
     4561 tgatttctat gcagctcaaa cgactgaagg tccagaaggg gaacgtgtca tgattgcctg
     4621 gatgcataca tggggacgtc cgcttgtaac caatgacttg ggacataagt ggtatggtca
     4681 aatgaccctg cctcgtctac ttaagcaagg tgagaatgga ctcagacagg tcttgccagc
     4741 aggtatcttg aacagctttg acgacattga aatcggtcaa gttatccaag gtccaagcaa
     4801 gctctctctt aaactgggcg acagtctaga cttgaaactg ggtactgacc aagactatct
     4861 tcaatttggc tatgataagg ccaaacaaga agtctatatc gaccgtagct ctctcaaaat
     4921 ccagcaagtt ggtgaggagg aatggtcaac tgttcgtcga gcggtcacgg ttcaagcgac
     4981 agagctagag gtcttggttg acaccaactg tttggaaatc tttattaacg atggtcaaga
     5041 aaccttgaca tcaaccttct acgtagaagg tcagattatt ctaaacgctc tataatatta
     5101 tttgccctct taaattattc tttcactcca agagaaaccc tgtatttgca gggttttttc
     5161 tatcatgaaa attcttcccg attatgataa aataaagaga ttgagaaagt tgaggtatct
     5221 atgagaaaga caagtaaaaa aggaaaggct acgaggcgac caaccaaggc agaattagca
     5281 cagcaagaac gtgttaaaaa tatcaccctt cgagtattgg gacttttatt cattgccttt
     5341 gcagccagtc gcctaggtgt gtttggagtg accagctaca atattttccg gctattattt
     5401 ggtagtctgg cctatctatt attggcgggt gcatttatct accttcttat tcccaaagtc
     5461 ttacgcgaaa gagaagggac catatcgggc ttctggctga ttgttatcgg gttattgatt
     5521 gaatttcagg cttacttaga ctggacctat caagggagtg acttattcgg tcatactcta
     5581 aaattggcct tgtcagacct agctaagttt caggtaacag catttctagg cggagggatg
     5641 attggaagta tcttctatct gccagtctcc ttcctctttg caaatgtcgg ttccttcttc
     5701 atcggtcttc tagtgatagc atttggtatc ttttttgtaa gcccatggtc tgtttatgat
     5761 gttgccgatg gcttggcggt tgccaaagat aagttggtgg agacacaggt aaaaagagca
     5821 gagcttcgaa cacagaagaa ggctgaacga gaagaaaaac gtcagcaaga attagctcgt
     5881 ctagaagagg aacgccttcg tctagaggaa gaggaagagt cagctcgggc tttggcactg
     5941 gtagataggc atgtcgattt agagacgggt gaaatcctcg aagaagagcc tgttcaagta
     6001 ccgattattt cagaatatga ccacttagac atagaagatg aatttcctat tatgttggca
     6061 gaagatgacc aaccagcaca atcaaactcg gcaagccagg cttctgaatc aaatgagttt
     6121 gagaaggacg agacagatgt gcagattgat ttcaagccta agcagagact agcatataaa
     6181 cttccgtcta tagacttatt tgctcctata aaagctaaga gtcagtccaa tgaaaaacga
     6241 attgttcgtc agaatattaa agttttagaa gacacctttg ccagttttgg aatcaaggta
     6301 gtagttgagc gtgctgagat tggaccatcg gtaaccaagt atgaagtcaa accagcagtc
     6361 ggcgttcgtg tcaatcggat ttctaaccta gctgatgatt tggctctagc ccttgcggct
     6421 aaagatgtcc gtattgaagc tcctatccca ggaaaatcac tggtcggtat tgaagttcca
     6481 aactccgaag tggctacagt acctttccgt gagctctggg aacaatctaa aacagaccca
     6541 gacaagcttt tggaaattcc tctcggtaag gctgtcaatg gttccgtccg ttcctttaac
     6601 ctagcacgta tgccccatct attggtggct ggttcaactg gttcagggaa gtctgttgct
     6661 gtcaacggta tcatctcttc aattctcatg aaagctggtc cagaccaagt taagttcatg
     6721 atgattgacc ccaaaatggt cgagttatcg gtctataatg atattcccca cctattgatt
     6781 cccgttgtga ccaacccgcg caaggctgct cgagctcttc aaaaagtagt ggatgaaatg
     6841 gagaaacgct atgagttgtt tagccaaatt ggtgtccgaa acttggaagg ttataatgcg
     6901 aaggtcgaag aatttaatag ccgttcagaa gaaaaacaga ttccacttcc tctcattgtg
     6961 gtaatcgtag atgagttggc agacttgatg atggtagcca gcaaggaagt ggaagatgcc
     7021 attattcgct tgggacagaa ggctcgtgca gcaggtatcc acatgattct tgctacccag
     7081 cgaccatctg ttgatgttat ttcaggtttg attaaagcta atgtaccatc tcgtatcgcc
     7141 tttgccgtat caagcggtac agacagtcgg acgattctag atgaaaacgg tgctgaaaaa
     7201 ctcttaggcc gcggtgacat gctctttaaa ccgattgatg agaaccatcc agtccgcttg
     7261 caaggttcat ttatatccga tgatgatgta gaagcaatag ttggctttat caaggatcag
     7321 gcagatgcag attatgatga atcctttgat ccaggtgaag tggcagaagg tgatggcgat
     7381 gcaggttttg gtgatgctgg aggagatcca cttttcaacg aagcacgtgc cttggtagtt
     7441 gagacacaaa aagccagcgc ctctatgatt caacgacgct tgtctgttgg ttttaacagg
     7501 gcaacacgcc tcatggaaga gctagaagca gcgggtgtca ttggtccagc tgaaggaaca
     7561 aaacctagaa aggtattgga aacacaataa tgaaatttga tgcagttcat catattgcaa
     7621 ttatcggtag tgactatgac aagacaagag aattttatgt tgagaaacta ggctttgaac
     7681 aggtggatga acatatccga ccagaaaaaa atgatattct cttcaatgtc aaaaaaggca
     7741 atctgatctt ggaaattttc atcaaaccag atgcgccaat gcgtccggtc atgcccaatc
     7801 ctgaacatac aggtctacgc catctagcct tccaggttgc agatgtggaa gcttgtctgg
     7861 aagagtttga ccgtttggat atccgacatg aagtcctgcg aacagatgat tttgatggta
     7921 aaaaaatggc cttcttcttt gatccagatg gcctccctct agaaattcat gagtaagtcc
     7981 atcttttcat gcccagagag gcctatcaat atgacaacta attaatactc ttagaaaatc
     8041 aaaatcatac gctgttgact tgatttgatg aaggtcagtt ctatctatag tcatttgaat
     8101 taactttgat acatagtcac tttcggcttg ccgtactctg cagaagtgac ttgctttgca
     8161 agttatatct ccaacctagc acagccacta ggctgtgcta gcaacctgca cctcagttcc
     8221 ttgtctgaaa gctaattcat tcgactatac atctacgtcg ccttgtctga tttagtataa
     8281 aaaagaatcc ccactgcgcc tgcaatgggg atttattatg ccatctatga aaggatggat
     8341 gattttagga ttttaaagtg aagaccgcaa taaccaaagc tagatacatc aaaaaggtca
     8401 agataaaact agctcgccag aaaaccttga agaaacggcg atataaaaaa ttctttttct
     8461 ttaaaaggaa gaaaccgcaa agaccaatcg ctagtagtga gagggctagg acaagctgag
     8521 gcagtagact gttatagtag gccttatccg aaatcagata aaattcaatt gcatagagag
     8581 gaaaggcaat gtctgcaaag ttccatcctc ggttttgcaa cctaaaaaac ttgacagcaa
     8641 ttatcgaaat ggccaaggtt agaaagataa atagaaaggc tactattttt aaaaatata
//
LOCUS       DASGBY010000083         8540 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.083, whole genome shotgun sequence.
ACCESSION   DASGBY010000083 DASGBY010000000
VERSION     DASGBY010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8540
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.083"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            86..451
                     /locus_tag="U1396_001410"
     CDS             86..451
                     /locus_tag="U1396_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM5342596.1"
                     /translation="MTVKINTKDGQIELTDDVIATVVGGATTEIFGVVGMASKSAIKD
                     NFQALLRKENYSKGVVIKTLEDGRIAVDVYTVMSYGVKISEVSRNIQERVKFNLENQL
                     GISVDAVNVFIQNIKVVGE"
     gene            454..2118
                     /locus_tag="U1396_001411"
     CDS             454..2118
                     /locus_tag="U1396_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEM5342597.1"
                     /translation="MSKITTSLFQEMVQAASTRLNKQAEYVNSLNVFPVPDGDTGTNM
                     GMTITNGAKEVADKSASTVGEVAQILSKGLLMGARGNSGVITSQLFRGFGQSVKGKVE
                     LDGKDLAQAFQHGVEVAYKAVMKPVEGTILTVSRGAATAALKKAEETDDAVEVMRATL
                     DGANRALKKTPEMLPVLKEVGVVDSGGQGLVYIYEGFLSALTGEYIASEDFEATPAVM
                     SEMINAEHHKSVAGHVATEDITFGYCTEIMVALRQGPTYVKDFDYEEFRNYLNDLGDS
                     LLVVNDDEIVKVHVHTEDPGLVMQAGLQYGSLVKVKVDNMREQHEAQVEKVESFQKPA
                     EQKEYAIIAVAAGEGLTEIFKSQGVDYVISGGQTMNPSTEDFVNAIELVNARNVILLP
                     NNKNILMAAQTAAEVAEVAVKVVETKTLPQGFTSLLAFDPSRDLESNFEAMTASLAEV
                     KSGSVTTAVRDTTIDGLEIHENDNLGMVDGKIVVSNPDMMETLVATFDKMLDEDSEIV
                     TIYIGEDGDEELAQTLAEQLEEQFEDVEVEIHQGNQPVYPYLFSVE"
     gene            2183..2659
                     /gene="tsaE"
                     /locus_tag="U1396_001412"
     CDS             2183..2659
                     /gene="tsaE"
                     /locus_tag="U1396_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEM5342598.1"
                     /translation="MTNYWGYGIIKDMYSQNENELIAIGERIGKACKPNQVLVLSGDL
                     GAGKTTLTKGLAKGLKIEQMIKSPTYTIVREYEGTMPLYHLDVYRIGDDPDSIDLDDF
                     LYGGGLTVIEWGELLDVSLFDDYLLIRIEKEGDGRRLTVESHGAQSSDLAKEFQNV"
     gene            2652..3179
                     /locus_tag="U1396_001413"
     CDS             2652..3179
                     /locus_tag="U1396_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342599.1"
                     /translation="MSEKEVYFSEAEPADAAAFIDFMNQVARETDYLVMDETGFRFSV
                     DEMETIFEAGIENPRELCLLAKVGSEVVGAISVKSSKQFRISHIGNIFIAVKKAYWGH
                     GLGTILLEEVLHWAEEMDVLKRLELTVQVRNQAAVHLYQKLGFNIEGTQIRGARTDEG
                     EWLDLYYMGKLIGEV"
     gene            3176..4369
                     /locus_tag="U1396_001414"
     CDS             3176..4369
                     /locus_tag="U1396_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5342600.1"
                     /translation="MTIGKKIFLMSLAIIGLTVGAGLIYGASLLNFSTDAISKTFKQL
                     DGEEKITPIDATEPLTILLMGVDMDQATRGGDWEGGRSDSMILVTVNPKTKETNMMSL
                     TRDIMVEIAEANGESSGTVEKLNHSYSYGQAPMAIATIEKMMDINIDRYIEINMDGLV
                     ELVDAVGGIEVNNTLGFPISISEHEPAYTSIVQPGKQLVNGDQALVYARMRYDDPEGD
                     IGRQRRQREVITAIIKKLLQLDGFTQYKKILTAISNNMRTNIEISPATIPNLLGYKDS
                     ISKLNSYQLRGVDQMVDAIYYQLPTSTHLLEMQNVLKKSIGLEENTDLVTNVKVYEGQ
                     MGLPSPINVYDVYTNLLLLEASPWAESLDPEIGSPSATTTVTTEEQVTDFSTEPVLGD
                     ENGSQ"
     gene            complement(4478..4780)
                     /locus_tag="U1396_001415"
     CDS             complement(4478..4780)
                     /locus_tag="U1396_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5342601.1"
                     /translation="MKLRNIILAVSAATASFLAVTHRDKIAKEVQETKQLLSDIQLNK
                     DNIQEQLAIIQSFQEPLQEMASDLQYKTRVYQQSIAGNLEEIQQILKKYQNENNTP"
     gene            complement(4782..5195)
                     /locus_tag="U1396_001416"
     CDS             complement(4782..5195)
                     /locus_tag="U1396_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM5342602.1"
                     /translation="MSDCIFCKIISGEIPASKVYEDDQVLAFLDITQATKGHTLVVPK
                     KHYRNVLDMDKEAAATLFSVVPTIARQLKEKLGASGLNIVNNNEEAAGQTVFHTHIHL
                     LPRFNNQDGLSIQFKANDPDFPALAQLAQELYLGE"
     gene            5258..5992
                     /locus_tag="U1396_001417"
     CDS             5258..5992
                     /locus_tag="U1396_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342603.1"
                     /translation="MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTI
                     KEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIPETPSLYEELTLKEHLEVVAMAY
                     DLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
                     LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEE
                     LQSAFGMDGASLNEIYLALTQEGVAG"
     gene            5989..7029
                     /locus_tag="U1396_001418"
     CDS             5989..7029
                     /locus_tag="U1396_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342604.1"
                     /translation="MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYR
                     QLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEEADQIFLLTKEKDILQGLEVAAR
                     CTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
                     LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYL
                     RAFLRSGDYLGLTIRLLLLAILSLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQ
                     YITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENTMVVVLLLVGIFLHE
                     IYLPLKLKKLID"
     gene            7079..7873
                     /locus_tag="U1396_001419"
     CDS             7079..7873
                     /locus_tag="U1396_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM5342605.1"
                     /translation="MQFDTSGLQLQSIAGNSGKAFKGLRSDGTPVFVKYEMPPIVSAL
                     AREQITPPVLSANREVGMGHRVEQEWLNGRTLERQDMTSKQIRQILVRMHYSRILLNQ
                     ALQMNYTYMEPQDLVYRWQEEAPTRLGQNSYLQSICQDLLNNLPRFRQEVATFVHGDL
                     HHSNWVETTSGLVYLTDWETACVTDRMLDVAYILTHYIPRQSWEEWLRAYGYKYNSTV
                     LNKVYWYGQLGYLNQIAKHVESYNVLAANKEIYALRQFRQSFYKEV"
     gene            7870..8508
                     /gene="trmB"
                     /locus_tag="U1396_001420"
     CDS             7870..8508
                     /gene="trmB"
                     /locus_tag="U1396_001420"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEM5342606.1"
                     /translation="MRVRNRKGASELLANNPQYVISNPEECKGKWAEIFGNNNPIHIE
                     VGSGKGRFVTGMAAQNPDINYIGIDIQMTVLSYALDRVLEAGLPNIKLLQVDGSSLTN
                     YFAPAEIDQLYLNFSDPWPKKRHEKRRLTYKSFLDTYKEILPEKGEIHFKTDNRGLFE
                     YSLASFSQYGMVLKQVWLDLHADGLEGNVMTEYEEKFSNKGQVIYRVEAQFQ"
BASE COUNT         2447 a         1438 c         2071 g         2584 t
ORIGIN      
        1 aaaatccgat gtaacaagct tgttttttac agaaagcaga aaatgtggta aaatggagtg
       61 ataaaactat ttgaggtaac gaattatgac tgttaaaatc aatactaaag acggccaaat
      121 cgaattgact gatgacgtga ttgccacagt tgttggcggt gctacgactg agattttcgg
      181 tgttgttggg atggctagta agtctgcgat caaggataat tttcaagcac ttttgagaaa
      241 agaaaattat tctaaaggtg ttgtgattaa gaccttggaa gatggtcgca tcgcagtcga
      301 tgtttatact gtgatgagct acggtgtaaa aatcagtgaa gtatctcgca atatccaaga
      361 acgcgttaag ttcaacttgg aaaatcaact aggtatctct gtagatgccg tcaatgtctt
      421 tatccaaaat atcaaagtcg taggagaata attgtgtcta aaattacaac tagtttattt
      481 caagaaatgg tgcaggcagc atcaactcgt ttgaataaac aagccgaata tgtgaactca
      541 ctcaatgttt tcccagttcc agatggggat actgggacca acatggggat gactattacc
      601 aatggtgcta aagaagtagc agataagtct gcttctactg ttggagaagt tgcgcaaatt
      661 ctttctaagg gcttgttgat gggagctcgt ggaaactcag gtgttattac gtcgcaattg
      721 ttccgcggtt ttgggcaatc tgttaaaggc aaggttgaat tggacggtaa ggatttggcg
      781 caagcctttc aacatggtgt agaagtggct tataaagccg ttatgaagcc agttgaaggt
      841 acaattctta ctgtttcgcg tggggcagcc actgccgctt tgaaaaaggc agaagagact
      901 gatgatgcgg ttgaggtcat gcgtgccact cttgacggtg ctaatcgtgc tcttaagaaa
      961 acgccagaga tgcttccagt attgaaggaa gttggcgttg tcgattcagg tggacaaggt
     1021 cttgtttaca tttatgaagg ctttttgtca gctttgacgg gtgagtatat tgcttcggaa
     1081 gattttgagg cgacacctgc tgttatgtct gaaatgatca atgctgagca ccacaagtca
     1141 gttgcaggtc atgtagcgac tgaagatatt acctttggtt actgtacaga aatcatggta
     1201 gctcttcgcc aggggcctac ttatgtcaag gactttgatt atgaagaatt ccgtaactac
     1261 cttaacgacc ttggggattc cctccttgtg gtcaacgatg atgagatcgt taaagtccat
     1321 gtccatacag aagatccagg tttggtcatg caagcgggtc ttcaatatgg tagcttggtc
     1381 aaggtaaaag tggacaatat gcgtgagcaa catgaagctc aggttgagaa agtagaaagt
     1441 ttccaaaaac cggctgaaca aaaagagtat gctattattg cggtagctgc tggggaaggt
     1501 ttgacagaaa tcttcaaatc acaaggcgtt gactatgtga tttcaggtgg tcagaccatg
     1561 aacccatcaa cagaagattt tgtcaatgct attgaattgg tcaatgcccg caatgtcatc
     1621 ttgttgccaa acaacaaaaa tatcttgatg gctgctcaga cggctgctga ggttgcagaa
     1681 gttgcggtta aggttgtgga aactaagacc ctaccacaag gttttactag cttgcttgct
     1741 tttgatccaa gtcgtgattt ggaaagcaac tttgaagcga tgacggcatc tctcgcagag
     1801 gtgaaaagtg gtagcgtgac aactgcggtc cgcgatacaa ccattgacgg tcttgaaatc
     1861 catgagaatg acaaccttgg tatggttgat ggcaagattg tggtttctaa tccagatatg
     1921 atggagacac ttgtggctac ctttgataaa atgttggatg aagacagcga aatcgtgact
     1981 atctacatcg gtgaagatgg tgatgaggaa ctcgctcaaa ctcttgctga acagctagaa
     2041 gaacaatttg aagatgttga ggtcgaaatc catcaaggaa atcaaccagt ctatccatat
     2101 cttttcagcg tagaataaac aaaatcgcag gctctggctt gcgatttttt ctgtcgactt
     2161 gtctacaatt tccagtagac ctatgacaaa ctactggggc tatggtataa ttaaagacat
     2221 gtatagtcag aatgaaaatg aattgattgc cattggtgag agaattggaa aagcctgtaa
     2281 gccaaatcaa gttctagtat tatcagggga tttgggtgct gggaaaacaa ctctgaccaa
     2341 gggtttggcc aagggtttaa aaattgaaca gatgattaag agtcctactt atacgattgt
     2401 gcgagagtat gaggggacca tgccactcta tcacttagat gtttatcgaa ttggagatga
     2461 ccctgactcg attgatttgg atgattttct ctatggagga ggtctaacgg ttatcgagtg
     2521 gggagaatta ctggatgtca gtctatttga tgactatttg ctcattcgta tagagaaaga
     2581 gggagatggt cgacgattga cagtcgaatc tcatggagct caaagtagcg atttagcgaa
     2641 ggagttccaa aatgtctgaa aaagaagtgt attttagtga agctgaacca gctgatgcag
     2701 cagcttttat tgattttatg aatcaagttg ctagagaaac ggattatctg gtcatggatg
     2761 agactggttt tcgatttagt gttgatgaaa tggagaccat cttcgaagca ggaatcgaaa
     2821 atcctcgtga attgtgcctg ttggctaagg ttggttcgga agtcgtcggc gcaatttctg
     2881 ttaagtcctc taagcagttt cgcattagcc atatcggaaa tatttttatt gcagtaaaaa
     2941 aagcctattg gggtcacggt ctagggacga ttttactgga ggaagtattg cattgggcag
     3001 aggaaatgga tgtattgaag cgtttggaat taacggttca ggttcgcaat caggcggcag
     3061 tacatttata tcaaaaacta ggatttaaca ttgaaggaac ccagatacgt ggggctagaa
     3121 cagatgaagg agaatggctt gatctttatt atatgggcaa gttaattggt gaagtatgac
     3181 aattggaaaa aaaatattct taatgtcttt ggctattatt ggtttaacag taggtgctgg
     3241 cttaatatat ggagccagct tgttaaattt ttctacggat gctatttcga aaacatttaa
     3301 gcagttagat ggagaagaaa aaatcactcc gattgatgcg acagagcccc taactatcct
     3361 actgatgggg gtggatatgg accaagcaac ccgtggagga gattgggagg gtggtcgtag
     3421 tgattcgatg attttggtaa ctgttaatcc caagactaag gaaaccaata tgatgagctt
     3481 gactcgtgat attatggttg agattgcaga agcgaatggg gagtcttcag gaacggttga
     3541 aaaactaaat cattcttata gctacggaca ggcaccgatg gccattgcca cgatcgaaaa
     3601 gatgatggat attaacattg accgctatat cgaaataaat atggatggtc tggttgagct
     3661 tgttgatgcg gttggaggta ttgaggtaaa caatactctt ggcttcccta tatccatttc
     3721 ggaacatgag cctgcctaca cctctattgt ccagccgggg aaacagttgg taaatgggga
     3781 tcaggcgctg gtttatgctc ggatgcgcta tgatgatcct gagggggata ttggtcgtca
     3841 gagacgtcaa cgtgaagtta taacggctat tataaaaaaa ctccttcagt tagacggttt
     3901 tacccagtat aagaagattc tgactgccat ttctaataat atgcgaacca acattgagat
     3961 tagtcctgcg acaattccaa atctcttggg gtacaaggac tctatctcca agttgaattc
     4021 ctatcagttg cgcggtgtgg atcaaatggt tgatgcaatc tattatcaat taccaaccag
     4081 tacacatcta ttggaaatgc aaaatgttct gaaaaaatct atcggcttag aagaaaatac
     4141 cgacttagtc acaaacgtga aggtctacga aggacagatg ggattgccaa gtccaataaa
     4201 tgtttatgat gtatatacaa atctcttgct gttagaagca agtccatggg cagaaagctt
     4261 ggatccagaa atagggagtc catcggctac tacgactgtg acaacagaag agcaggtaac
     4321 cgatttttca acagagccag tactcggtga tgaaaacggg tcacaataat gtagtcattc
     4381 agtttttctt ttattacttt gacgagcgag tataaaagcc tataaaaata gaggttgttt
     4441 gcaacctcta tttttatata tttggaaatt ccctatgtca gggagtgtta ttctcattct
     4501 ggtatttttt gagaatctgt tggatttctt ccaagtttcc tgcaatactt tgctgataga
     4561 ctcgagtctt atattgtaag tcagaagcca tttcctgcaa gggttcttga aaactttgga
     4621 taatggcaag ttgttcctga atattgtcct tgttcagttg aatatctgat agaagttgtt
     4681 tggtttcctg tacttcttta gcgattttat cccgatgcgt gactgcaagg aagctggcgg
     4741 tagcggcgct tacggctaaa atgatattac gaagtttcat attattctcc tagatagagc
     4801 tcttgtgcca gttgagccag ggctgggaag tcagggtcgt tggctttaaa ttgaatgctc
     4861 aatccatctt gattgttaaa gcgtggtaag agatggatgt gtgtatgaaa gacggtttgc
     4921 ccagcggcct cctcgttatt attaacgatg tttagaccac tagctccaag tttttctttt
     4981 aactgacgag cgatggttgg cacaacagaa aagagtgtgg ctgcagcttc tttatccatg
     5041 tcaagcacgt ttcggtagtg ttttttaggg acaaccaatg tgtgtccttt tgtggcctga
     5101 gtgatgtcta aaaaggctaa tacttggtca tcttcataga cttttgaagc tggtatttct
     5161 ccagagataa ttttgcaaaa aatacaatcc gacataatgg caacctcttt ctgggatttt
     5221 tgttataata attatatcaa attgtaggaa gaaatgtatg ttagaagtaa aaaatgtaac
     5281 tggaggatat gtcaatatcc cagttttgaa agatgtatct tttaccgttg aggatggtca
     5341 attagttggt ctaattggtt taaatggtgc agggaaatca acgactatta aggaaattat
     5401 cggtcttttg accccctatc aaggacagat tgcaattgac ggcctaactt tgctacaagg
     5461 ggctgaaaat tatcggaaga agattgggtt tatccctgaa acaccaagtt tgtatgaaga
     5521 actaaccctc aaagagcact tggaagtggt agcaatggcc tatgatttat cctgggagca
     5581 agcttgggga cgtgttgagc acttgttaaa actgtttcgc ttggatgaga aattggactg
     5641 gtttcctgtc aatttttcaa agggaatgaa gcagaaggtc atgattattt gtgcttttat
     5701 ggtggagccg agtctattga ttgttgatga gccttttctg ggattagacc ctgtggctat
     5761 ctctgattta atcgctcttt tgggggaaga aaaatctaag ggcacttcaa tcctcatgtc
     5821 cactcacgtt cttgactcag ctgagaaaat gtgcgactct tttgtgattt tacatcaggg
     5881 acaggtccgt gcaactggaa atttggagga gctacaaagc gcatttggta tggatggtgc
     5941 aagtctgaat gaaatttatc tggccttgac gcaagaagga gtggctggat gaaagaattg
     6001 tttcaacaac gccgactaga ttttttaaat cgttgttcca agtatctgcg ctatgttctg
     6061 aatgaccatt ttgttttggt tctcatggtt ttattaggct ttttgagttt gcaataccgt
     6121 caattattgt tgtcgttccc tgagaatccg ttgccgattg tttttgtggt tattgcaatc
     6181 agtctactgg tactagtgtc cggaagaatt gcgacttatc tagaagaagc tgatcaaatc
     6241 ttcctattga ccaaggaaaa agacattctg caaggactcg aggttgcagc cagatgcacg
     6301 gtcttgtttt ggtcctctat acaggtggtg gttcagcttg ttttgttacc aatctatttg
     6361 aaactgggtt taccggtgtg gatgattgta gctggtcttc ttactttgtt ggttttaaaa
     6421 tgtctttttg tcaagcgcca attagtggct tatcagtcac agggagtatt ggactggtct
     6481 aaggctattc aagatgaaca aaaaaggaaa cagtctattt tacgtttctt tgccttattt
     6541 acgacggtta aaggaatcag tacgactgtt aaaccgagaa gctatctcaa tggaatcttg
     6601 cgtcttgtca agtcgagaca gacttggttt tatctctact tacgggcttt cttgcgttca
     6661 ggagactact tgggcttgac gatacgtcta ctgttgttgg cgattttgtc cctatttgcc
     6721 attgaagaat cgtggttatc catcggccta gttttagtct ttcattattt gcttgtcttt
     6781 cagttgttgg ggctttacaa gcattatgat tatcaatata taacacaact gtatcctctg
     6841 gagaaagatt ccaagaaaat tggtcttcag aatttgctta gagtgatttt atatagtcta
     6901 ttactggtgg aattgggctt tgctctgcta ttttctaaag agaatacgat ggtagtcgtc
     6961 ttacttctcg tggggatttt cttgcatgaa atatatttgc ctctaaaatt aaaaaaattg
     7021 attgactaaa tagacgaaaa ttagtaaaat agtaaggaat ttttaaagga ggaaaggcat
     7081 gcagtttgat accagtgggc tacaattaca gtctattgca ggaaatagtg gcaaagcgtt
     7141 taaaggccta cggtcagacg gaacgccagt ctttgtgaag tatgagatgc ctccgatagt
     7201 gtctgctctt gcgcgtgagc aaattacacc acccgttttg tcagcaaatc gtgaagtagg
     7261 aatggggcat cgtgtagagc aggagtggtt gaatggtcgt accttggagc gtcaagatat
     7321 gactagtaaa cagattcgtc aaatactggt gagaatgcac tattctcgca ttttgctcaa
     7381 tcaggctttg cagatgaatt atacctatat ggaacctcag gatttggttt atcgttggca
     7441 agaagaggcg ccaactagat tgggacagaa ttcttatctg caatctatct gtcaagattt
     7501 attgaataat ctaccaagat tccgtcaaga ggtggcaaca tttgttcacg gagatttgca
     7561 tcatagtaac tgggtagaaa cgacgtctgg tttggtgtat ttgacagatt gggagaccgc
     7621 ttgtgtaacg gatcggatgt tggatgttgc ctatattttg acgcattata ttcctcgtca
     7681 gtcctgggaa gagtggcttc gggcttatgg ctacaaatat aacagcacag tattaaataa
     7741 ggtttattgg tatggccagc ttggctatct aaaccaaata gctaagcatg tagaaagcta
     7801 caatgttttg gctgcaaata aagaaattta tgctctacgg caattccgtc agagtttcta
     7861 taaggaagta tgagagttag aaatcgtaag ggagcgagtg agcttctagc aaacaatccc
     7921 cagtatgtta tctccaatcc agaggagtgt aaggggaaat gggcagagat ttttggaaac
     7981 aataatccta tccacataga agttggttct ggtaaaggtc gctttgtcac tggtatggct
     8041 gcgcaaaatc cagatattaa ctatattggt attgatattc agatgaccgt gttaagctat
     8101 gccttggatc gtgtgcttga agctggctta ccaaatataa aattattgca ggtggatggt
     8161 tcgagtttga ccaactattt tgcaccggca gaaatagatc agctttatct gaatttttca
     8221 gatccatggc ctaagaaacg tcatgagaaa cgccgtttga cctacaagtc attcttggat
     8281 acctacaagg aaatcctacc tgagaaggga gaaatccact tcaaaacaga taatcgtggt
     8341 ctgtttgagt atagcctggc tagtttttct caatatggca tggtcttgaa gcaagtttgg
     8401 ctagatttgc atgctgatgg tttggaaggc aacgttatga cagagtatga ggagaaattc
     8461 tcaaacaagg gtcaagttat ctatcgtgtg gaagcacagt ttcaataatt cccttagtgg
     8521 aaaatgagga gaggtctaac
//
LOCUS       DASGBY010000084         8488 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.084, whole genome shotgun sequence.
ACCESSION   DASGBY010000084 DASGBY010000000
VERSION     DASGBY010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8488
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.084"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            429..1364
                     /gene="mvk"
                     /locus_tag="U1396_001421"
     CDS             429..1364
                     /gene="mvk"
                     /locus_tag="U1396_001421"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEM5342607.1"
                     /translation="MSVVGKANGKIILMGEHAVVYGQPAIAMPFSAVEIIAQVTAQGE
                     ALTVACDFYKGLVHKMPKIWESLKHAIRFSLYRIGAPTDPAIHIEISSTIPAERGMGS
                     SAAVAVAVARALFAYYKKELTDSELWDIVQSSEKIAHGNPSGIDAATTSGKSPVFFIK
                     HQPIEPFELKLHAYLVVADTGVTGNTLEAISDVADLLEKKPEAIKLVEELGNLTRQAK
                     EDLATGQAEILGSRMNQAHALLQKLGVSDPSLDKLVSLAQENGALGAKLTGGGRGGCM
                     IALARTAQDAQKLAHILDQAGARQTWIQYLGETND"
     gene            1357..2382
                     /gene="mvaD"
                     /locus_tag="U1396_001422"
     CDS             1357..2382
                     /gene="mvaD"
                     /locus_tag="U1396_001422"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HEM5342608.1"
                     /translation="MTKQIGIARAHTNIALIKYWGKRDKELFLPMNSSLSLTLDAFYT
                     DTKVVFDPELTADEFYLNGMLQKEKEILKISRFLDLFCEYIGERAFARVESLNFVPTA
                     AGLASSASAFAALALATATALDLDLSPATLSTLARRGSGSSTRSLFGGFVEWDMGTGS
                     EDSMAHPIDDADWDIGMVVLAVNTGPKKIASREGMDHTVATSPFYSAWVDTAKQDLAD
                     IKAAIAGRDFEKLGQITEHNGMKMHATTLSANPPFTYWSADSLVAQEAVRQVREATGL
                     SAYMTMDAGPNVKVLCRASQMDELVAELAKVFPREKIITSKPGPAAYVLSEDEWQTSQ
                     AAFEKGL"
     gene            2384..3463
                     /locus_tag="U1396_001423"
     CDS             2384..3463
                     /locus_tag="U1396_001423"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HEM5342609.1"
                     /translation="MKVQVKIPGKLFLAGEYAVVEAGYPAVIAAVDQYLTVTIETSDR
                     GLLHSSQQADLYLTWERKEGIAHVQGDHPYALIETAMQVTEAYLTAKGYACHGTYSLA
                     VQSDLDDQTSGAKYGLGSSGAVTVATVKALLTYYGHRPGALLAYKLAALAQTKLGMTG
                     SFGDLAASSFGGLIAYHSLDRSWLLGKMAELSLLDLVESDWQSLSISPIQLPQGLDLL
                     VGWTGSAASTDSLVSQMESQKSQAEKEQIHSWFLADSKTCVEQLIVACQTNDSASVRQ
                     GLAQNRKLLQDFARGMGLVIETPQLSQLCDLAQTYGAVAKSSGAGGGDCGICLVDSKE
                     QKVAIEKAWQEAGILPLQLKITSRE"
     gene            3474..4571
                     /locus_tag="U1396_001424"
     CDS             3474..4571
                     /locus_tag="U1396_001424"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEM5342610.1"
                     /translation="MFYLGEFGLDRKDQHVGLANQQYSATPAKDFTETLFVHHSLPQT
                     KVDEVDISTSVAGLDFAFPFFINAMTGGSKKTREINRLLGIMGHFGKIALASGSVSAA
                     IKDPSVAETFSVMRRENPYGIIFANLGAHHSVENAKRAVDLLEANAIQIHVNAPQEIV
                     MPEGDRDFTMWLKNIETLVREVEVPVIVKEVGFGMSRETVAQLASVGVQTIDVSGTGG
                     TDFAKIENARRTFNDYTYLEGWGQSTVTSLVEAMSVSEEVRPSLIASGGIKTPLDIVK
                     SLALGADLVGMSNHFLQYVKDGKGHRFDDGLQAIKTYQWQMAEIMTMLGAKNIAELRQ
                     KDLVLAPNVQNWCEARGIDWKAYARRSANVS"
     gene            complement(4654..6402)
                     /locus_tag="U1396_001425"
     CDS             complement(4654..6402)
                     /locus_tag="U1396_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342611.1"
                     /translation="MLSKTKQASVFWRLLSYLKAYRLLTVLALSFLLLTTVVRSLIPL
                     LASYFIDHYISSISETAAAILAAYFALYLLQMVLQYFGNLWFAKVSYSIVRDIRRDAF
                     GRMEKLGMAYFDQTPSGSIVSRITNDTESISEMFSGILSSFISALFIIITTLSTMFAL
                     DWKLTCLIVLFLPLIFLLVDQYRKRSAPIVAKTRSLLSAINSKLAESIEGIRIIQAFS
                     QEDRLKEEFEAINQEHLDYASRSMALDSLFLRPALSLVKILAYALLMTYFGLDWSQAG
                     ISAGLIYAFIQYVNRLFDPLLDVTQHFSTLQTSMVSAGRVFTLMDQTIEEPLQLDRGA
                     KIDKGHIVFEDVYFSYDGKRQILDKVSFEVRQGQTIAFVGATGSGKSSIINVFMRFYE
                     FQSGRILIDGQDIRSFSQEELRSAIGLVLQDPFLFHGTIATNIQMYQDISREEIEEAA
                     RFVDAAPFIEKLPEKYDHLVTERGTSFSTGQRQLLAFARTMASQPKILILDEATANID
                     SETEQTVQTSLEKMRKGRTTIAIAHRLSTIQDADCIYVLDKGKIIESGNHEQLLSLKG
                     HYHRMYQLQAGQLTAT"
     gene            complement(6392..8134)
                     /locus_tag="U1396_001426"
     CDS             complement(6392..8134)
                     /locus_tag="U1396_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5342612.1"
                     /translation="MKIIKQLWWFFSLEKKAYLIGILSLCLVSLLNLLPASIMGQLID
                     QIASGQLTEHRLLLGVAGLILSALAMYGLRYLWRMNILATSYRLGKIMRARLFNHFMH
                     LSPSFFQQYRTGDLMAHATNDINALTRLAGGGVMSFVDATVTALVTLVTMSVSISWQM
                     TLVAILPLPFMTLTTNFLGRRTHENFKASQAAFSELNNKVQEAVSGIKVTKSFGYQEQ
                     ETAAFQEVNQAAFLQNIKTMRYDALFNPAVLFFIGLSYLLTLLVGSHFISQGQVSLGQ
                     LVTFMTYLDLLVWPLMAIGFLVNISQRGDVSYNRIQTLLSISSEVIETDQPLPAPSNG
                     EIVYEISEFAYDNIPVLQDIQFHIKKGQTIGLVGPTGSGKTSLLKLLMREYDVTNGQI
                     LLNQQNIKHYKLGDLRQLMGYVPQDQFLFATSVAENIRFGNPDLSLDQVKEAAKAVHV
                     YEDIQDMPDRFDTMVGEKGISLSGGQKQRLAMARAMILNPDILLLDDSLSAVDAKTEH
                     AILETIKQERLDKTTIITAHRLSAIVHADLILVLEDGKIVERGRHQELLDEKGWYYDT
                     YMMQQLEKEESDAL"
     gene            8391..>8488
                     /locus_tag="U1396_001427"
     CDS             8391..>8488
                     /locus_tag="U1396_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEM5342613.1"
                     /translation="MKAIVTVVGKDKSGIVAGVATKIAELGLNIDD"
BASE COUNT         2323 a         1862 c         2153 g         2150 t
ORIGIN      
        1 aatttctttt tcatataatc tccagagaac agtcgactgc ggtcggctgt tttcgtgtca
       61 agttttaaga aaataagtat gagaaattgc tttagaaaaa tctaagaaat ctttcagttt
      121 cgcttaagtt tgtggatgta tactatattc aagctagaaa tagcgaacaa ctttcttttt
      181 catataatct cctagagaac agtcggctgc ggccggctgt tttcgtgttt cggcgcattt
      241 tggaagtttg tttagtttat attcgtccat cttttcacca aaaggtgtcc ctatctctaa
      301 gtcgcaagcg acaaagagct aggtatcata taatctctag agagcagtcg gccgcggtcg
      361 gctgttttcg tgtgttctat tcttatgtaa aaatggtata atagtagtga ttgtataagg
      421 agaaaagtat gtcggtagta ggaaaagcaa atggaaaaat cattttgatg ggagagcatg
      481 cggtggtcta tgggcaacca gcaattgcta tgcctttttc tgctgttgaa attattgctc
      541 aggtaactgc tcaaggggaa gcgctgactg ttgcttgtga cttctataaa ggcttggtgc
      601 acaagatgcc aaaaatctgg gaaagcctca agcatgccat ccgtttctcg ctctatcgta
      661 tcggagcacc gacagacccg gctatccata tcgagattag ttccaccatt cctgccgagc
      721 gcggtatggg ctccagtgca gccgtggcag ttgcagtagc acgcgccctc tttgcctact
      781 ataaaaaaga gctgacagac agcgaactct gggacatcgt ccagtcttcg gaaaaaattg
      841 ctcacggcaa tccatcaggc atagatgcgg caaccaccag cggcaagtcc cccgtctttt
      901 ttatcaagca ccagcccatc gaaccttttg agctgaaact ccatgcctat ttggtagtgg
      961 ctgatacagg tgtgacggga aacaccttag aagccatttc ggacgtggct gatttgttgg
     1021 agaaaaagcc agaggctatc aagctagtag aagaactggg gaacttgacc cgacaggcca
     1081 aggaagattt agccacaggc caggcagaga ttctaggtag cagaatgaac caagctcatg
     1141 ccctcctgca aaaattaggc gtgtctgatc ctagcctaga taagctagtc agccttgccc
     1201 aagaaaatgg agccctagga gccaaattaa ctggtggcgg ccgaggaggc tgcatgattg
     1261 ccttggcaag aacagctcag gatgcccaaa aacttgcaca catccttgac caagcaggcg
     1321 cccgccaaac ctggatacag tacttaggag aaaccaatga ctaaacaaat aggcatagcc
     1381 cgtgcccata ccaatattgc cttgattaaa tactggggaa aacgcgataa ggaattattc
     1441 ctacctatga attccagttt atccctgacc cttgacgcat tttatacgga taccaaggtc
     1501 gtttttgacc cagaattaac tgctgatgag ttctatctca acggaatgtt acaaaaagaa
     1561 aaagaaattt taaaaatttc tcgatttttg gatttatttt gcgaatatat aggtgaaagg
     1621 gcatttgccc gagtggaaag tctaaatttt gttccgactg cggctggttt ggcaagctca
     1681 gcatcagctt ttgcagcgct ggctcttgca accgcaactg ccttggattt agatttgtca
     1741 ccagctaccc tatcaaccct tgctcgcagg ggctcaggtt ctagtacccg tagcctattc
     1801 ggtggatttg ttgagtggga tatgggaact ggttcggaag attcgatggc tcatcccatt
     1861 gacgatgcgg attgggatat cggcatggtc gtcttggcgg tcaataccgg accgaaaaag
     1921 attgccagtc gagagggaat ggaccacacg gttgctactt cgccatttta ctcagcctgg
     1981 gtagatacag ccaagcaaga cttggcggac atcaaggcag ctattgccgg ccgtgatttt
     2041 gaaaaacttg gtcagatcac agaacacaat ggcatgaaga tgcatgccac aacgctttct
     2101 gccaatccac cctttaccta ctggtcagcc gatagcctag tggctcaaga ggcagtccgt
     2161 caggttcgtg aagcaactgg cttgtcagcc tatatgacca tggatgctgg accaaatgtc
     2221 aaggtcctct gccgagcaag tcaaatggat gagctagtag ctgaattggc caaagtcttc
     2281 ccaagagaga aaatcattac cagcaagcct ggtcctgctg cctacgtcct cagtgaagac
     2341 gagtggcaga cctcacaagc agcgtttgaa aagggcttgt agcatgaaag tacaagtaaa
     2401 gatacctgga aaactctttc tagcagggga atacgcagtt gttgaggccg gttaccctgc
     2461 ggtgattgcg gcggttgacc agtacctgac cgtcaccatt gaaacaagtg accgaggcct
     2521 tcttcattcc agccagcaag cagatctcta tctgacctgg gagcgtaagg aaggtatcgc
     2581 tcatgtccaa ggtgatcatc cctatgctct gattgagaca gccatgcagg tgacagaagc
     2641 ctatctgaca gccaagggct atgcttgtca tggaacttac agtctagcgg tccagtctga
     2701 cctggatgac cagacttcag gtgccaagta tggtctgggg tcgtcagggg cagtaacggt
     2761 tgcgacggtc aaggccttgt tgacctacta cggtcaccga ccaggtgccc tccttgccta
     2821 caagctggcg gccttggccc agaccaagct aggcatgaca ggttccttcg gagatttggc
     2881 ggcttccagt tttggcggct tgatcgccta tcattccctg gaccgttctt ggcttttagg
     2941 gaaaatggca gagctgtccc tgctggatct ggtggaaagt gattggcaaa gtttgtctat
     3001 cagccctatc cagttacccc aaggtttaga cctcttggtg ggatggacag ggtcggcggc
     3061 ttcgacggat agtctagttt cccagatgga aagccaaaaa agtcaggcag aaaaagagca
     3121 aattcatagc tggtttctag ccgactctaa gacctgtgta gagcagttga tagtagcttg
     3181 tcagacaaat gactcagcgt cagtaaggca gggccttgct caaaaccgca aactcttaca
     3241 ggactttgcg agaggaatgg gcttggtcat tgaaacgcct caactgagcc aactctgtga
     3301 cctggcccag acttatggag cggtggccaa gtcatctggt gcaggtggtg gtgactgtgg
     3361 catttgcttg gtagacagta aggaacaaaa agtagcgatt gagaaggctt ggcaagaagc
     3421 tggcattctt ccactccaac taaagatcac aagtagagaa taaggagaac cctatgtttt
     3481 atctaggaga atttggttta gaccgcaagg atcaacacgt tggcttggcc aaccagcaat
     3541 atagtgccac accggccaag gactttacgg agaccttgtt tgtccaccat tccctgcctc
     3601 aaaccaaggt ggatgaagtg gatatttcga ccagcgtagc tggtttggac tttgcctttc
     3661 ctttcttcat caatgccatg actggtggaa gtaagaagac ccgcgaaatc aaccgtctgt
     3721 tgggaattat gggacatttt gggaagattg ctctggcttc tggttcggtc agtgcggcga
     3781 tcaaggatcc atctgttgcg gaaaccttct ctgttatgcg tcgggaaaat ccttacggga
     3841 ttatctttgc caacctaggt gcccatcaca gtgttgagaa tgccaagcgg gcggtggatt
     3901 tgttggaggc aaatgccatt cagatccatg tcaatgcccc ccaggagatt gtcatgcctg
     3961 agggagaccg tgactttact atgtggttga aaaatattga aacccttgta cgtgaggtgg
     4021 aagtacctgt catcgtcaag gaagttggtt ttggcatgag ccgtgaaact gtcgcccagt
     4081 tggcttctgt cggtgtgcaa actattgatg tgtctggtac tggggggacg gatttcgcca
     4141 agattgaaaa tgcccgccgt accttcaatg attatactta tctagaaggt tgggggcagt
     4201 ctaccgtgac ttccttggta gaagccatgt ctgtttctga agaagttcgc ccaagcctga
     4261 ttgcatctgg tggtattaag acgccactag atattgttaa atcattggct ttgggtgcag
     4321 accttgttgg tatgtccaac catttcctcc agtatgtcaa ggatggtaag gggcatcgtt
     4381 ttgacgacgg cttgcaggct attaagactt atcaatggca gatggctgaa atcatgacca
     4441 tgctgggcgc taagaatatt gcggaactcc ggcagaaaga tttggtcttg gctccaaatg
     4501 tacaaaactg gtgcgaagcg cgtgggattg actggaaagc ctatgcccgt cggtcagcga
     4561 atgtgagtta aagagagaga tagttctcaa caatgtagaa aaataaaaaa gccaggtcca
     4621 ttttggaact tggcttttgt catggagtgg tttctaggtt gctgttaact ggcctgcttg
     4681 taactggtac atgcggtggt agtgaccctt gagggatagg agctgttcgt ggtttccaga
     4741 ctcgatgatt ttccccttgt ccaagacata gatacagtca gcatcttgaa tggtcgatag
     4801 gcggtgggcg atggcaatag ttgtccgccc ttttcgcatt ttctcaagag aagtctggac
     4861 cgtttgctct gtctccgaat cgatattggc ggtagcctcg tctaaaataa gaatcttagg
     4921 ctgactggcc atggtgcgtg caaaggccag aagttgccgt tgacctgtcg aaaaagaggt
     4981 gccccgctca gtgaccaggt ggtcgtattt ctcaggaagt ttctcaataa agggagcagc
     5041 atccacaaat cgagccgctt cctcaatctc ctctcgggaa atatcctgat acatctggat
     5101 attggtcgca atggttccgt gaaaaaggaa gggatcttgc aggactaggc caatcgcgga
     5161 ccgcaattct tcctgcgaaa agctacgaat atcctgaccg tcaatcaaaa tccgtccaga
     5221 ttggaattca tagaaacgca taaagacatt gatgatagaa gatttgcctg atcctgtagc
     5281 acccacaaag gcgatggtct gcccctgtct cacttcaaag gaaaccttgt ccagaatttg
     5341 ccgcttgccg tcataggaaa agtaaacatc ctcaaagaca atatgcccct tgtcaatctt
     5401 ggcccctcgg tccagctgta gtggctcctc gatggtctgg tccatgagcg taaagacccg
     5461 tccggcagat accatagagg tttggagggt ggaaaaatgc tgcgtgacat ccagcaaggg
     5521 atcgaaaaga cgattgacat actggatgaa agcatagata agaccagcag aaattccagc
     5581 ctgtgaccag tccaaaccaa aataggtcat gagtagggca taggccaaaa tcttaacaag
     5641 tgacagggca gggcggagaa agagactgtc caaggccatg gaacgactgg catagtccag
     5701 atgttcctgg ttgatagctt cgaactcttc tttcaatcgg tcttcctgag aaaaagcctg
     5761 gataatccga attccttcaa tactttcagc cagtttgctg ttgatggcac tcaacagact
     5821 tctagttttg gccacaatgg gagctgaccg cttccgatat tgatcaacca ataagaaaat
     5881 caagggaaga aagaggacga tcagacaggt caatttccaa tccagagcaa acatggtcga
     5941 aagagtcgtg atgataataa agagagctga gataaaactg gataaaatcc ctgaaaacat
     6001 ctctgaaatg ctctccgtat cattggtgat tcgcgagaca atggagccac taggagtctg
     6061 gtcaaagtaa gccattccca gcttttccat tctcccaaaa gcatcccggc gaatatctct
     6121 gacaatgctg taagaaactt ttgcaaacca gagatttcca aaatattgaa gcaccatttg
     6181 gagcagatag agggcaaagt aggccgctag aatagccgca gctgtctcag aaatcgagga
     6241 aatatagtgg tctataaagt aagaggctag aaggggaatt agactgcgga ctacggtagt
     6301 cagcaataaa aagctcaagg caaggactgt cagcagtcga taggctttga gataggacaa
     6361 gagtcgccaa aaaacactgg cttgcttggt tttagagagc atcactttcc tccttttcga
     6421 gttgctgcat catataggta tcgtagtacc agcctttttc atctagtaat tcttggtgac
     6481 gacctcgttc tacgattttc ccatcttcaa ggaccagaat caaatcggca tggacaatag
     6541 ctgacagacg atgggcggtg ataatggtgg tcttatcaag gcgttcttgc ttgatggttt
     6601 caagaatagc gtgctctgtc ttggcatcca ctgccgagag cgaatcgtcc aagagtagaa
     6661 tatctggatt gagaatcata gcacgagcca tagccaaccg ttgcttttgt ccaccagaca
     6721 gggaaatccc cttttcacca accatggtgt caaagcgatc tggcatatcc tggatatcct
     6781 catagacatg gacagctttg gcagcctctt tcacctggtc tagtgagagg tctggattgc
     6841 caaagcggat attctcagcc acgctggttg caaagaggaa ctggtcttgg ggaacatagc
     6901 ccatcaactg ccgtaggtca ccgagcttgt agtgctttat gttttgctga ttgagcaaaa
     6961 tctgtccatt tgtcacatcg tattctcgca tgaggagctt gagtaggctg gtcttcccag
     7021 agcctgttgg ccccaccaga ccaattgtct gccctttttt gatgtgaaac tggatgtctt
     7081 ggaggactgg tatgttatca taagcaaatt cgctaatctc atagacaatc tctccattgc
     7141 ttggtgcagg cagcggttgg tctgtttcaa tgacctctga ggaaatgctg agaagggtct
     7201 gaatccgatt gtaagataca tcaccacgct ggctaatatt gaccaaaaaa ccgatggcca
     7261 tgagcggcca gacgaggaga tctaaatagg tcatgaaagt tactagctgg cccagactga
     7321 cctgaccttg cgagatgaag tgagagccga ccagaagggt cagcaggtag gacaggccaa
     7381 taaaaaagag gacggcaggg ttgaacaggg catcgtaacg catggttttg atattctgca
     7441 agaaggctgc ttggttgact tcctgaaaag ccgccgtttc ttgttcttgg tagccaaagg
     7501 atttagtgac ctttatacca gaaacagctt cctgtacctt gttgttaagc tctgaaaagg
     7561 ctgcttgtga agccttgaaa ttttcatggg tacgacggcc tagaaaatta gtagtgagtg
     7621 tcatgaaggg cagggggagg attgcaacca aggtcatctg ccaggaaatg ctcacactca
     7681 tggtgaccag tgtaaccaag gcagtaacgg tagcatcaac aaaggacatg acgccaccac
     7741 ctgctagtcg tgtcaaggca ttgatatcat tggtcgcatg ggccattaaa tcccctgttc
     7801 gatattgctg aaaaaaggaa ggggataggt gcataaagtg gttaaacagc cgagccctca
     7861 tgatttttcc tagacgataa gatgttgcca ggatgttcat tcgccaaaga tagcggaggc
     7921 cgtacatggc caaggctgac aagatgagcc cagctacccc gagtagcaag cgatgctcag
     7981 tcaactgtcc gctggcaatc tggtcaatca actgccccat gatagaggcg ggcaggagat
     8041 tgaggaggct gaccaaacag agtgataaaa tcccaatcag ataggccttt ttctcaaggg
     8101 aaaagaacca ccacaattgc ttgataatct tcataagtat cctttctgaa caaaagaaag
     8161 gttggtagct tgtcgcaacc aacaaataat agaattcggt gacactagtg tatcacagac
     8221 tggtagaaat agaaagtttg caacttaaaa actaggcaac tctagccgta gccgaataga
     8281 agaaacagtt ggagttgtaa acacgtacga tacaggtaga aatcaaaaga tttttacctt
     8341 tttctgtcta tttatgataa aataaatgaa aatttagaag aggtgttcag atgaaagcta
     8401 ttgttacagt tgtcggtaag gacaagtcag gaattgttgc gggtgttgcg actaagattg
     8461 cggagttagg gctcaatatt gacgatat
//
LOCUS       DASGBY010000085         8404 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.085, whole genome shotgun sequence.
ACCESSION   DASGBY010000085 DASGBY010000000
VERSION     DASGBY010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8404
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.085"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..1125
                     /gene="dnaN"
                     /locus_tag="U1396_001428"
     CDS             <1..1125
                     /gene="dnaN"
                     /locus_tag="U1396_001428"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000581170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM5342614.1"
                     /translation="SINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGS
                     NGQISIEHFISIQDENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQKQIVL
                     TSGKSEITLKGKEAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTG
                     VHFVLTENKNLKTVATDSHRMSQRKLVLDTSGDDFNVVIPSRSLREFTAVFTDDIETV
                     EVFFSNNQILFRSEHISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARL
                     LSNATQNGTVKLEIANNVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEAL
                     KATTSEQVKISFISSVRPFTLIPNNEGEDFIQLVTPVRTN"
     gene            1369..2250
                     /locus_tag="U1396_001429"
     CDS             1369..2250
                     /locus_tag="U1396_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342615.1"
                     /translation="MTLYILANPNAGSHTAEHIIFQIKESYPQLAVNIFMTVGPEDEK
                     SQIEAILKEFVSSEDQLMILGGDGTLSKALRFWPASLPFAYYPTGSGNDFAKAMNITS
                     LYRSVDAILEGKTSRIYVLNSSYGTVVNSMDFGFAAQVINGSTNSILKKILNKVKLGK
                     LTYLFFGIKTLFSKQAINLELTLDEKSYQLDNLFFISVANSLYFGGGIMIWPTASAKK
                     KEVDIVYFKNGNFYQRLQSLLALLTKRHESSHTIQHLTGVDVVLKSKEKLLLQIDGET
                     CTANEVTLTYQERSMYL"
     gene            2260..2463
                     /locus_tag="U1396_001430"
     CDS             2260..2463
                     /locus_tag="U1396_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HEM5342616.1"
                     /translation="MYQLGSFVEMKKPHACVIKSTGKKANKWEVIRLGADIKIRCTNC
                     DHVVMMSRHDFEQKMKQVLPSEA"
     gene            2567..2932
                     /locus_tag="U1396_001431"
     CDS             2567..2932
                     /locus_tag="U1396_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5342617.1"
                     /translation="MNQLAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPD
                     IDKLVQLAEIFGVSLDYLVLGKEPEKEIVVEQRGKMNGWEFLSEESKRPVENKEIFLF
                     ILSMAICIFVVWILTMITK"
     gene            3044..4159
                     /gene="ychF"
                     /locus_tag="U1396_001432"
     CDS             3044..4159
                     /gene="ychF"
                     /locus_tag="U1396_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002269933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEM5342618.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMV
                     EVPDERLQKLTELITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVH
                     VVRAFDDENVMREQGREDAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKD
                     KDSVAEFAVLEKIKPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKV
                     ADPESISYIQKIRDFAATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDK
                     LTRAAYHLLGLGTYFTAGEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDD
                     LMTYGSEKAVKEAGRLREEGKEYVVQDGDIMEFRFNV"
     gene            4317..4886
                     /locus_tag="U1396_001433"
     CDS             4317..4886
                     /locus_tag="U1396_001433"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000163933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEM5342619.1"
                     /translation="MTRLIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFNHDKIF
                     QADIGTTFIDGEKIYLVKPTTFMNESGKAVHALMAYYGLDATDILVAYDDLDMAVGKI
                     RFRQKGSAGGHNGIKSIVKHIGTQEFDRIKIGIGRPKGKMSVVNHVLSGFDTEDRIEI
                     DLALDKLDKAVNVYLEEDDFDTVMRKFNG"
     gene            4886..8380
                     /gene="mfd"
                     /locus_tag="U1396_001434"
     CDS             4886..8380
                     /gene="mfd"
                     /locus_tag="U1396_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEM5342620.1"
                     /translation="MNILDLLHKNKQINQWQSGLNKSTRQLLLGLTGTSKSLVMATAY
                     DSMAEKIMIVTATQNDAEKLVADLVAIIGSENVYNFFTDDSPIAEFVFASKERTQSRI
                     DSLNFLTDSTSSGILVASMAACRVLLPSPETYKGSKIKLEVGQEIEVDKLVNNLVNIG
                     YKKVSRVLTQGEFSQRGDILDIFDMQAETPYRIEFFGDEIDGIRIFDVDSQKSLENLD
                     EISISPASDIILSSEDYSRASQYIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRK
                     FLSCIYEQSWTLLDYLPKSSPLFLDDFHKISDKQAQFEKEIADLLTDDLQKGKTVSSL
                     KYFASTYAELRKYKPATFFSSFQKGLGNVKFDALYQFTQHPMQEFFHQIPLLKDELTR
                     YAKSNNTVVIQASSDVSLQTLQKTLQEYDIHLPVHAADKLVEGQQQVTIGQLASGFHL
                     MDEKLVFITEKEIFNKKMKRKTRRTNISNAERIKDYSELAVGDYVVHHVHGIGQYLGI
                     ETIEISGIHRDYLTVQYQNFDRISIPVEQIDLLSKYLASDGKAPKVNKLNDGRFQRTK
                     QKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDENQIEFDNYFTHVETDDQLRSIDEI
                     KQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYANFQ
                     ERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLVI
                     DEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPV
                     QTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQ
                     MSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGR
                     VGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNILG
                     AAQSGFIDSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYLPSDYIGDQRQ
                     KIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQVFCHTVLR
                     RQHQVTVTFEPMACQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKKEYEILE
                     ELISFAEKLKEIKARKAE"
BASE COUNT         2730 a         1475 c         1725 g         2474 t
ORIGIN      
        1 tctattaata aaaatatatt tctacaagca cttagtatta ctaaacgggc aatcagtacc
       61 aaaaatgcta ttccaattct ttcaacagta aaaattacag taactagtga aggaatcact
      121 ttaactggtt caaatggaca aatctcgatt gaacatttta tttctattca agatgaaaat
      181 gcaggacttt tgatcagttc tccaggctcc attctcttag aagctggttt ctttattaat
      241 gtcgtatcca gcatgccgga tttagtcctt gacttcaatg aaattgaaca aaagcaaatc
      301 gttttgacaa gtggtaagtc tgaaatcaca ttaaagggaa aagaagcaga acagtatcct
      361 cgtttacagg aagttccaac ttcaaaacca ttggtgttag aaaccaaagt attaaaacaa
      421 acaattaatg aaacagcatt tgcagcttct acacaagaaa gtcgtcctat tcttacgggt
      481 gttcattttg ttttaacaga aaataaaaat ctaaaaactg ttgcaacaga ttcacaccgt
      541 atgagccaac ggaaattggt ccttgatacc tctggtgatg attttaatgt tgtcattcca
      601 agtcgttctc tccgtgaatt tactgcagtt tttacagatg atattgaaac agtagaagtc
      661 ttcttttcaa ataatcaaat cctttttaga agcgagcata ttagcttcta tacacgctta
      721 ttagaaggta cctaccctga taccgaccgc ttaattccaa ctgagtttaa aacaactgca
      781 atttttgata ctgcaaatct tcgtcactcg atggagcgtg ctcgtcttct ttcaaatgca
      841 acccaaaatg gtacagtaaa actagaaatt gctaataatg ttgtatcggc tcatgtaaat
      901 tctccagaag ttggacgtgt gaatgaggaa ttagatactg tagaagtatc aggtgaagat
      961 ttagtaatca gctttaaccc aacttacttg atagaagcat tgaaagccac aactagtgaa
     1021 caagtgaaaa ttagctttat ctcttctgtc cgtccattta cattgattcc aaataatgaa
     1081 ggggaagatt ttattcaatt ggttacacca gttcgtacca actaaatagt attaaggagg
     1141 ctgggcaaaa agaccaacct cgcttctcag ggttcgtgtc aacatctcag cgcagtggtt
     1201 gattggcaga tttgttcgtg ttttacactc caaatctgac ctaatcaact gtgcgggggc
     1261 gggaagacga actctttttt tgaccagtcg agttctttcc cgctcccttt attttatact
     1321 aaaaaatagc acctagctta tttttatata tttagtgatg gggaataaat gacgttatat
     1381 atattagcta atcctaatgc tggtagccat actgctgaac atatcatatt ccaaataaaa
     1441 gaaagttatc cacagcttgc agttaacatt tttatgacag ttggtcctga ggatgaaaaa
     1501 agtcaaatag aggctatttt aaaggagttt gtcagtagtg aggaccaatt aatgatttta
     1561 ggtggagacg gcacactgtc taaagctttg cgtttttggc cagctagtct accgtttgct
     1621 tattatccaa caggatctgg aaatgatttt gctaaggcaa tgaatataac atcgctctat
     1681 agaagtgtag atgccatttt agagggaaaa acaagtcgga tatatgtttt aaatagttca
     1741 tacggaacgg ttgtaaacag tatggatttt ggctttgcag ctcaagttat caatggttca
     1801 acgaattcaa ttttgaaaaa aattctgaac aaggtaaaac ttgggaagtt aacttatcta
     1861 ttctttggta ttaaaacatt attttcaaaa caagctataa acttagaatt aactcttgat
     1921 gaaaaatctt atcagttaga taatctcttt tttatttctg tagcaaatag tctttatttt
     1981 ggtggaggaa tcatgatatg gccaacagca agtgctaaaa agaaggaagt agatattgtt
     2041 tacttcaaaa atggaaattt ctaccaacgt ctacaatcat tgttagcctt attaacgaag
     2101 aggcatgaat cttctcatac aattcagcat ttaacagggg tagatgtagt tttaaaatca
     2161 aaagaaaaat tattattgca aatagatgga gagacatgca ctgcaaatga ggtaacgtta
     2221 acctatcagg aaagaagtat gtatctttaa ggaggaagta tgtatcaatt aggatcattt
     2281 gtcgaaatga aaaagcctca tgcctgtgtc atcaaatcga ccggaaagaa ggcaaataag
     2341 tgggaggtta tccgtctagg agcggatatt aaaatccgtt gtaccaactg tgaccatgta
     2401 gtcatgatga gccggcatga ttttgaacaa aaaatgaaac aagttctacc aagtgaagcc
     2461 tagttgacag tttgcaactg ctggttgcga atatttccta aaaagtgcta gtcaactgtt
     2521 cctttctaaa ctataataga cttagaaaaa agaggaggaa atgatcatga atcagttagc
     2581 acagcaaatt cgaattttac gcacagccaa gaacctatcc caagatgagt tggcagagaa
     2641 actctatatt tcccgtcagg ctgtttccaa gtgggaaaat ggcgaagcaa cgccagatat
     2701 tgacaaactg gttcagctag cagaaatctt tggtgtcagt ctggattatc tggttttagg
     2761 aaaagaacct gagaaggaaa ttgtggtgga acaacgagga aaaatgaatg gttgggaatt
     2821 tttaagtgaa gaatccaagc gaccagttga aaataaagaa atttttctgt ttatcctctc
     2881 tatggccatc tgtatttttg tagtttggat cttgaccatg attacaaaat aatggattat
     2941 ttattcagca ttatttttaa cgaagcttgc taatcggcaa gctttttctc tacttttctg
     3001 ctataatagt catgattgaa tttttaattg gagagtaaaa aacatggctt taacagcagg
     3061 aatcgtcggt ttgccaaacg ttggtaaatc aactctattt aacgcaatta ccaaggcagg
     3121 agcagaagct gcaaactacc ctttcgcgac cattgatcca aacgtcggca tggtggaagt
     3181 gcccgatgag cgtttgcaga aattgacaga actcatcacc cctaaaaaga cagtgccaac
     3241 gacttttgaa tttactgata ttgccggtat cgtaaaaggt gcttctaaag gtgaaggact
     3301 tggaaataaa ttcttggcca atatccgcga agttgatgcg attgtccacg ttgtgcgtgc
     3361 ctttgacgat gaaaatgtta tgcgtgaaca aggccgtgaa gacgcctttg ttgatcctat
     3421 cgcagatatt gatactatta acctagaatt gattttggcg gacctagaga gcatcaacaa
     3481 gcgttatgcg cgtgtagaaa aaatggcccg tacgcaaaaa gacaaggatt ctgtcgcaga
     3541 atttgcagtt cttgaaaaaa tcaaacctgt cctagaagac ggaaaatctg ctcgtacagt
     3601 tgacttcaca gatgaagaac aaaaaatcgt taagcaactc ttcctcttga ccactaaacc
     3661 agtcctctat gttgccaacg tcgatgaaga caaggtagca gatcctgagt ctatcagtta
     3721 tattcagaaa atccgtgact ttgcggcaac agaaaatgca gaagtggtgg tgatttctgc
     3781 gcgtgctgaa gaagaaattt cagaactcga cgatgaagac aagggcgagt ttttagaagc
     3841 actcggatta acagaatctg gcgtggacaa attaacacgt gcagcctatc acttgcttgg
     3901 tctaggcacc tactttacag caggggagaa ggaggttcgt gcttggacct tcaaacgtgg
     3961 tatgaaagct cctcagtgtg caggcattat ccattcagac ttcgaaaaag gttttatccg
     4021 tgccgttacc atgtcatacg atgatttaat gacctacggc tctgagaagg ctgttaaaga
     4081 agcaggacgc cttcgtgaag aaggaaaaga gtacgtggtt caagatgggg acatcatgga
     4141 gttccgcttt aatgtttgat tgctaaactg tccttattct tcgttgtttt accttgccat
     4201 accatcagta ttgtctgcgg tttcaacgcc tagactaaga acagtttatc gcatcaaaga
     4261 ggatgattac ttggttggaa agctttttcc agccttttgg tatttaagga gaaaaaatga
     4321 cacgattgat catcggtctg ggaaatcccg gagaccgcta ttttgaaaca aaacataacg
     4381 ttggttttat gctgctggat aagattgcta agcgtgaaaa tgtgaccttt aatcacgata
     4441 agattttcca agctgacatt ggcacaacct ttattgacgg cgaaaaaatc tatctagtaa
     4501 agccaacgac cttcatgaac gaatcaggta aggctgttca tgccctgatg gcttattatg
     4561 gtctggatgc aactgatatt ttagtagctt atgatgactt agacatggct gtaggaaaaa
     4621 ttcgtttccg tcaaaaaggc tcagctggtg gccacaatgg tatcaaatcc attgtcaagc
     4681 atattggaac acaggaattt gaccgtatca agattggtat tgggcgtcct aaaggaaaaa
     4741 tgagcgttgt caaccacgtc ttatcaggat ttgatacaga agaccgtatt gaaatcgact
     4801 tagcactaga taaacttgac aaggctgtca acgtatatct cgaagaagat gattttgata
     4861 cagtaatgag aaagtttaac ggataatgaa tatactcgat ttacttcaca agaacaagca
     4921 aatcaatcag tggcagtctg gcttaaacaa gtcaactcgc caactattat taggactcac
     4981 tggaaccagt aagtcattag tcatggcgac tgcctatgat agtatggctg agaaaataat
     5041 gattgtgact gctactcaaa atgatgctga gaaattagtt gcagatttag tagccattat
     5101 tggaagtgag aatgtttaca acttttttac agatgatagt cctattgccg agtttgtttt
     5161 tgcatcaaaa gaacggactc aatcaaggat tgacagttta aatttcttga cagattctac
     5221 tagttcagga attttagttg ctagtatggc tgcttgtcgg gtcttattgc caagtcctga
     5281 gacttataaa ggttctaaaa taaagcttga agttggtcaa gaaatagaag ttgacaaact
     5341 tgtaaataat cttgtcaaca tcggctacaa aaaagtgtct cgtgtattaa cccagggaga
     5401 atttagccaa cgaggtgata ttctagatat ttttgacatg caagcagaaa ctccttaccg
     5461 aatagaattt tttggagatg agattgatgg cattcgtatt tttgatgttg acagtcaaaa
     5521 atccttagaa aatctagacg aaatctcgat ctctccagct tccgatatca ttttgtcttc
     5581 ggaagactat agtagagcta gccaatacat tcagacagct attgaacaat cgaccctaga
     5641 ggagcaacag tcttacctac gagaagtctt agctgatatg cagacggagt accggcatcc
     5701 agatttgcgt aaattcttgt cctgtatcta tgaacaatca tggacattgt tggattactt
     5761 gccaaagagt tctcccttat ttttggatga ttttcataaa atctctgata agcaggctca
     5821 atttgaaaaa gaaattgcag acttgttgac agatgattta cagaagggta aaacagtgtc
     5881 aagtttgaaa tattttgcct caacttacgc tgaattgaga aaatacaaac ctgccacctt
     5941 cttttcaagt tttcaaaaag gtttaggcaa tgtaaagttt gatgctcttt atcaatttac
     6001 acagcatcct atgcaggaat ttttccacca gattccactg ttaaaagatg aattgactcg
     6061 gtatgcgaaa tcaaacaata ccgttgttat tcaagcgagt tctgatgtga gtttacagac
     6121 tttacagaaa actttacaag agtatgatat tcatcttcca gtacatgcag cagataagtt
     6181 agtagaaggt cagcaacagg ttacgattgg tcagttagct tcaggttttc atttgatgga
     6241 tgagaaacta gttttcatca ctgaaaaaga gattttcaat aagaaaatga agcgtaagac
     6301 acgtagaacc aatatttcta acgctgaacg tattaaggac tatagtgaat tagcagttgg
     6361 tgactatgtt gttcaccatg ttcatggtat cggtcaatac ctaggaattg agactattga
     6421 aatttcaggc attcatcgtg attatttaac ggttcaatat caaaacttcg atcgcatttc
     6481 tattcctgta gaacaaattg atcttctctc caaatactta gcgtccgatg ggaaagctcc
     6541 aaaagttaat aaactaaacg atggccggtt ccaacgaact aagcaaaaag ttcagaagca
     6601 agtggaggat attgcagatg atttgattaa gctttatgcg gagcggagtc agctgaaagg
     6661 ctttgccttt tcaccagatg atgagaatca gattgagttt gacaactact ttacacatgt
     6721 ggaaaccgac gaccaacttc gttccattga tgaaatcaaa caagatatgg aaaaagactc
     6781 tccaatggat cgtttgctgg taggagatgt cggctttggt aagacagagg tagctatgcg
     6841 cgctgctttc aaagcagtca atgatggcaa gcaagtagct attcttgttc ctacgactgt
     6901 tttagcccag caacactatg ctaatttcca ggaacgattt gcggaatttc ctgtcaatgt
     6961 ggatgttatg agtcgtttta aaacaaaggc agagcaggaa aaaacacttg agaagttgaa
     7021 aaaaggccaa gttgacatct tgattggtac ccatcgcctt ctatcaaaag atgttgtttt
     7081 tgctgattta ggtttactgg ttattgacga agagcaacgg tttggtgtca agcataagga
     7141 acgcttgaag gaattgaaaa agaaaataga tgtcctaacc ttgactgcaa ctccgattcc
     7201 tcggacattg caaatgtcca tgctgggaat ccgcgattta tcagtaattg agactccacc
     7261 gacaaatcgc tatcctgtac aaacttatgt gatggaaaca aatccttccg ttatccgaga
     7321 tgcaatgctt cgtgagatag atcgcggagg tcaggtttac tatctttaca ataaagttga
     7381 caccattgaa cagaaagtgt ctgaattaaa agaattggtt ccagaagcta ctataggata
     7441 cgtccatgga caaatgtcgg agatccaatt agaaaatact ctctatgctt ttgtagaggg
     7501 tgaatatgat attctagtga ccacaacaat catcgaaaca ggtgttgata ttccaaatgc
     7561 taatacactg tttattgaaa atgcagatca tatgggactg tcaactcttt atcaacttag
     7621 aggacgtgtt ggccgttcca gtcggattgc ctatgcctat ctcatgtacc gtccagacaa
     7681 gtccttgaca gaagtagctg aaaaacgttt ggaggcaatc aagggcttta cagaactagg
     7741 atcaggtttc aagattgcca tgcaagattt gtccattcgt ggtgcgggaa atattttagg
     7801 tgctgctcag tcaggtttta ttgattctgt gggatatgag atgtattcac aattgctgga
     7861 acaagccatc ttggaaaaac aaggtaaggc aactcaacgt cagaagagta attcagaggt
     7921 caatttacag attgatgcct atctaccaag tgattatatt ggtgaccagc gacaaaaaat
     7981 tgaaatttac aagcgtataa agaatattga cagtcgtgtc aactatcaag aattacagga
     8041 agaattgatt gaccgttttg gagagtatcc tgatgtagta gcctacttgc ttgaaatcgg
     8101 tctattgaag tcatttttag accaagtttt ctgtcataca gttcttagac gacaacatca
     8161 agtgacagta acattcgaac ctatggcttg tcaaattttc ctaacgcaag attactttga
     8221 agctttatct gtgacaaatt tgaaagctca gataacggaa aataaaggaa aactagctgt
     8281 tgtgtttaac attcaacaga aaaaagaata tgaaatatta gaggaattga tttcttttgc
     8341 cgaaaaatta aaagaaatta aagcaaggaa ggcagaataa atttctcaaa taccttgaaa
     8401 aatg
//
LOCUS       DASGBY010000086         8257 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.086, whole genome shotgun sequence.
ACCESSION   DASGBY010000086 DASGBY010000000
VERSION     DASGBY010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8257
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.086"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            24..569
                     /locus_tag="U1396_001435"
     CDS             24..569
                     /locus_tag="U1396_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342621.1"
                     /translation="MVGITGINGSGKSVLFKLIAGLMQPNSGTIKVYGEDIVGKIPSG
                     LGALIEEPGFIPNYSGFENLEFLSTIQNIIGKEEILATLHRVGLFEDKDKKVRNYSLG
                     MKKKLGIAQAIMEEPRILLLDEPTNALDSQSVQRVYDLLKELSKEKGVTVLLASHNDS
                     DIRHLCDKVYLLENKQCKLLK"
     gene            824..1093
                     /gene="rpsO"
                     /locus_tag="U1396_001436"
     CDS             824..1093
                     /gene="rpsO"
                     /locus_tag="U1396_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEM5342622.1"
                     /translation="MAISKEKKNEIMAQYARHEGDTGSVEVQVAVLTWEINHLNDHIK
                     QHKKDHATYRGLMKKIGRRRNLLAYLRRTDVNRYRELIHSLGLRR"
     gene            1484..3703
                     /gene="pnp"
                     /locus_tag="U1396_001437"
     CDS             1484..3703
                     /gene="pnp"
                     /locus_tag="U1396_001437"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEM5342623.1"
                     /translation="MSKQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAV
                     MSKKMATGDFFPLQVNYEEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFA
                     EGFRNEVQVINTVLSYDPDASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELI
                     INPDKAQMEESLLDLTVAGNKDAINMVESGAKELSEDIMLEALLKGHEAIQELLDFQN
                     QIVAAVGKEKADVELLQVDPELQAEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVI
                     AAYEEKYAEHEEFDRIMRDVHEILELMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEV
                     DFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLGDEYKKRFLHHYNFPQYSVGS
                     TGRYGAPGRREIGHGALGERALEQVLPSLEDFPYAIRLVAEVLESNGSSSQASITAGT
                     LALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTRDGITAL
                     QMDIKIDGITPQILEEALAQAKKARFEILDVIEATIPEVRPDLAPTAPKIDTIKIDVD
                     KIKIVIGKGGETIDKIIAETGVKIDIDEDGFVAIFSPDRDAIERTKEIIAGLVREAKV
                     DEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKPEDLVEIGDIVDVKVIKI
                     DDKGRVDASMKALLPKPEGYVEPEKRERSDKPRRPRDHKEKKDNNFGEFKFHKVEKK"
     gene            3756..4373
                     /gene="cysE"
                     /locus_tag="U1396_001438"
     CDS             3756..4373
                     /gene="cysE"
                     /locus_tag="U1396_001438"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000539958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEM5342624.1"
                     /translation="MGWWKDTIEIVKEKDPAARTTLEVLLTYPGVKALAAHRLSHWMW
                     KKGFKLLARMHSQFWRFWTNIEIHPGAEIASGVFIDHGAGLVIGETAIIESGVMLYHG
                     VTLGGTGKDCGKRHPTVRKGALVSAHAQVIGPIEIGENAKVGAAAVVLADVPADVTVV
                     GMPAKIVRVHGQKDEKVIHDMEGGREHYTTKLAELREASHHSSHL"
     gene            4429..5289
                     /locus_tag="U1396_001439"
     CDS             4429..5289
                     /locus_tag="U1396_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342625.1"
                     /translation="MILATNVLNPQQLSAAKTLISTVQSHDGTYRDPYLSNMLNFDPE
                     MPAFFLAYQDQQLVGLLTVYADDEDVELAILVHPDYRRQGLAGKLYDCYQIRTANYPI
                     ASVTFQTERVFLDKHPDLATAWNLVEDTDTETWLGREREPYQFSQQAELTVSLAQAHH
                     ADDIACFQTKVFDSDYEVALRYAREAIADADSLLYLLEHGGAVIGSCTVDISTDDNYL
                     YGLAIAPDQQRKGYGTYLVKAVINDLITKNDKPFQIAVEDDNLIAKRLYETIGFTKQT
                     QVVYLDPKEG"
     gene            5374..5559
                     /locus_tag="U1396_001440"
     CDS             5374..5559
                     /locus_tag="U1396_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342626.1"
                     /translation="MLKKLVRQNWPYVLTAIAGTIMFILKFSQGSWQVGMIWLAATAY
                     WLVKLYQKHQVLKNTQK"
     gene            5570..6913
                     /locus_tag="U1396_001441"
     CDS             5570..6913
                     /locus_tag="U1396_001441"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000591125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEM5342627.1"
                     /translation="MIKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSV
                     VAFDTIRRYFEYRGFDVTYISNFTDVDDKIIKAANEAGMTTKELSDKFIAAFKEDVAK
                     LGVKPATKNPRVIDYMDEIIDFVQVLIDKGYAYEAAGDVYFRVEKAENYARLANKTLS
                     DLEAGASGRVEGEGQLKEHPFDFALWKTAKSGEVSWGSPWGAGRPGWHIECSVMATEI
                     LGATIDIHGGGADLEFPHHTNEIAQSECKTGQTFANYWMHNAMLNINDEKMSKSLGNF
                     LTAHDMLEQIDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVD
                     KSGLELHLAAFEAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGNMLAVFGIV
                     FEEEVLDSEIEALIAERQAARANRDFATADRIRDELAAQGIKLLDTKDGVRWTRD"
     gene            6906..7304
                     /locus_tag="U1396_001442"
     CDS             6906..7304
                     /locus_tag="U1396_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HEM5342628.1"
                     /translation="MTKAVDVNLINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHG
                     EANKYVSAKAQAGLISALLEAQLLTEKEEEIYKRGRNTNSHTKAKNADVVTYRMSTGF
                     EAVLGYLHMTEQTERLDELVGWCIDNIERG"
     gene            7306..8160
                     /locus_tag="U1396_001443"
     CDS             7306..8160
                     /locus_tag="U1396_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5342629.1"
                     /translation="MNEKELAGWFPQAKLSQEADAQSLALGDGRYLNLADADLTERER
                     YLLSLLSHPQEQKPSSPWQSYLHGQSSLPQAVEAIQFIHVHLWSQKDAQLDAWQTMMT
                     DLLPSQLAQVQLSSQDYLFIIEQSRWTDYQTILADTLSALEFDFGLRLTFLVGQVWSR
                     QLADRWSQLYQAEAALFAHWRAHYHQSTVLSFSQLFLWGQGRAGLEFGMIKASMLQLI
                     DQQDMQDIILALWTEGAVVTKTAQILYIHRNTLQYRLDKWQDLTGLQLKDLTDLSFCY
                     QVLLDRLF"
BASE COUNT         2352 a         1729 c         1998 g         2178 t
ORIGIN      
        1 actttgagtg ttcggaaggg gaaatagtag ggataactgg tataaatggt tcggggaaga
       61 gtgttctgtt caaattgata gcgggcctta tgcaaccgaa ttctgggact atcaaggtgt
      121 atggagaaga tattgtcgga aagattccat ctggtttagg agcattaatt gaagaaccag
      181 gctttattcc caattatagt ggatttgaaa atttagaatt tttatcaact atccaaaata
      241 tcattggtaa ggaagaaata cttgcaacct tacatcgtgt aggactcttt gaagataagg
      301 ataaaaaggt taggaattac tctctcggta tgaagaaaaa attaggaatt gcacaggcta
      361 ttatggaaga gcctagaatc cttctattgg atgagccgac aaatgctttg gatagtcaga
      421 gcgttcagag ggtgtatgac ttgctaaaag aactttcaaa agaaaagggt gttacggttt
      481 tattggccag tcataatgat agtgatatta gacatctatg tgataaagtt tatcttctcg
      541 aaaataagca atgtaagtta ttgaaataga aataatttat gaattgtgca ttcagttttg
      601 tacaaaattc gtgactattt tgacggtacg gctaatttgt aaaggtgaat ttgaaaaaga
      661 atagagaaag tctactcggt ttattggaag ataatatcag ttgacaaaag agttattcct
      721 tgatagaata aatgaggtcc aaaaaggaca aatctagctt tttcttggtt acaggtcgcc
      781 aacctgtcac tcggattagg ctcaaaacaa aggagaacat atcatggcaa tctcaaaaga
      841 gaaaaaaaat gaaatcatgg cacaatatgc tcgtcatgaa ggcgacacag gttcagttga
      901 agtacaagta gcagtactta cttgggaaat caaccacctt aacgaccaca tcaaacaaca
      961 caaaaaagac cacgcaactt accgtggttt gatgaaaaaa atcggtcgcc gtcgtaactt
     1021 gttggcatac ctacgccgca cagacgtaaa ccgttaccgt gaattgattc actcactcgg
     1081 actccgtcgt taatcaagat acgagaacgc aaaaaatccg tatgaaaata ggagattgtc
     1141 acagcgactc gtcgcaaggc aatctatctt tttcactagg attttcgttc gagttcaatt
     1201 cagcaagagc ctgtttatca ggcttttttt tgtttctctt tttccgagtt tttaggctgt
     1261 gcaaggtatt gatttctgct ttaatttctc gtttttgagt tactcattcg tttttcaact
     1321 tattttagca gaaattactt cctcaattcc ccacattttc cgtcaaatat gataaaataa
     1381 gaagtatgcg tggttttgtg caaaagagag tgaaacaagc ttgtttgatt gtcttttgta
     1441 gaaaatacgc aggaaaaatt tcagaaaaaa taggagacaa ttcatgtcaa aacaagtatt
     1501 tgaaacggtt tttgctggca agaaattggt cgttgaaaca ggccaggttg ccaaacaagc
     1561 caatggtgcg gttgttgttc gctatggcga ctcaacagtc cttacagcgg cagttatgtc
     1621 caagaaaatg gcaacgggtg atttcttccc gctccaagtc aactatgaag agaaaatgta
     1681 cgctgcaggg aaattcccag gtggctggat gaagcgtgaa ggccgtccgt caaccgatgc
     1741 gaccttgaca gctcgtttga ttgaccgtcc gatccgtcca atgtttgcgg aaggcttccg
     1801 taacgaagtc caagtcatca acacagtcct ttcttacgat ccagatgcct cagctccaat
     1861 ggcagccatg tttggttctt cattggcatt ggcaatctca gacatcccat tcaacggccc
     1921 aatcgcaggt gtccaggttg gttatgtcaa tggtgaactc atcatcaacc ctgacaaggc
     1981 tcaaatggaa gagtctctcc ttgacttgac agtagctggt aacaaggatg ctatcaacat
     2041 ggtagagtct ggtgccaaag aattgtcaga agacatcatg ttggaggcac tcctcaaagg
     2101 tcatgaggct attcaagaac tccttgactt ccaaaatcaa atcgtagcag cagtcggcaa
     2161 ggaaaaagca gatgtggaac ttcttcaagt ggacccagaa ttgcaggctg agattgtcgc
     2221 agcttacaat gacgatttga aaaaagcggt gcaggtagaa gaaaaattgg cccgtgaaga
     2281 tgcgaccaat gccgtgcgtg agaccgtcat cgcagcctac gaagaaaaat atgctgaaca
     2341 cgaagaattt gaccgtatca tgcgtgatgt ccatgaaatc ttggaactca tggagcatgc
     2401 agaggttcgt cgtttgatta cagaagacaa ggttcgtcca gacggtcgtc gtgtggatga
     2461 aattcgtccg ctggacgcag aagtggactt cttgccaaac gttcatggct caggtctctt
     2521 tacccgtggt caaactcagg cactttcagt cttgaccttg gccccaatgg gtgaaactca
     2581 aatcatcgac ggattgggcg acgagtacaa gaaacgcttc ttgcaccatt acaatttccc
     2641 acaatattca gttggttcaa ctggtcgcta tggtgcacca ggtcgtcgtg aaattggtca
     2701 cggtgctctt ggtgagcgtg cccttgagca agttttgcct agcttggaag acttccctta
     2761 cgctatccgc ttggtggcag aagttttgga atcaaacggt tcttcatcac aggcttctat
     2821 cacagctggg acccttgccc tcatggcagg tggtgtgcca atcaaggcac cagttgcagg
     2881 gatcgctatg ggtctgattt cagacggcac caactacact gttctgactg atattcaagg
     2941 tcttgaggac cactttggcg acatggactt caaggtagct ggtacccgtg atggtatcac
     3001 agctcttcag atggacatca agattgacgg tatcacaccg caaatcttgg aagaagcctt
     3061 ggcacaggct aagaaggcac gctttgaaat ccttgatgtc atcgaagcga cgatcccaga
     3121 agttcgtcct gacttggcac caaccgcacc gaagattgac acgatcaaga ttgatgtgga
     3181 taaaatcaag attgtcatcg gtaagggtgg cgaaactatt gataagatta ttgcagaaac
     3241 tggtgtgaaa atcgatatcg acgaagacgg ttttgtggct atcttctcac cagatcgcga
     3301 tgcaattgaa cggaccaagg aaatcattgc aggtcttgtt cgtgaagcaa aagtggacga
     3361 agtcttccaa gcaaaagtcg ttcgtttgga gaaattcggt gcctttgtca acctctttga
     3421 caagactgat gccctggtcc acgtttctga aatggcttgg actcgtgtca ataaaccaga
     3481 agatttggtt gaaatcggcg atattgtcga tgtcaaagtt atcaagattg acgataaagg
     3541 tcgtgttgat gcttctatga aggctcttct tccaaaacca gaaggttatg tggagccaga
     3601 aaaacgcgag cgttctgaca aacctcgccg tccaagagac cacaaagaga aaaaagacaa
     3661 caactttggc gaattcaaat tccacaaggt tgaaaagaaa taagctgagt agacaagttc
     3721 ggtagcgggc ttgtctttcg ctagaaggag tgactatggg ttggtggaag gacaccattg
     3781 agattgtaaa agaaaaagat ccggcagcac ggacgacctt ggaagttctt ttgacctacc
     3841 caggtgttaa agccttggct gcccaccgtc tgtcccactg gatgtggaaa aaaggtttta
     3901 aattactagc taggatgcac agccaatttt ggcgtttttg gactaatatt gaaattcatc
     3961 caggcgccga gattgcttcg ggggttttca ttgaccacgg agctggtttg gttattggtg
     4021 agacggctat tattgagtct ggtgtcatgc tttaccacgg cgtaacgctt ggtggtacgg
     4081 gtaaggattg tggcaaacgc catccgactg tgcgaaaagg ggctctggtt tctgctcacg
     4141 cccaagtcat tggccctatt gagattggag aaaatgctaa agtgggtgca gctgccgttg
     4201 tcctagccga tgttccagca gatgtgacag tggtcggtat gccggctaaa atcgtccgtg
     4261 tccatggtca aaaagatgag aaggtcattc atgacatgga aggtggtcgt gaacactaca
     4321 ccaccaaact ggcagagctg agagaagcca gccatcattc atcgcatttg taggaaagcc
     4381 acatatggta agtccgatgt gatttagcca tagagaggaa aaataagcat gatactagcc
     4441 actaatgtcc taaatcccca gcagttatcc gcagcaaaaa ctctgataag tactgtacaa
     4501 tcccatgacg gaacctatcg tgacccttac ctgtcaaata tgctcaactt tgaccctgaa
     4561 atgccagctt ttttcttggc ctatcaagac caacagttgg tggggctctt gactgtgtat
     4621 gctgatgatg aggatgtaga acttgcaatt ctcgtgcacc cagactaccg cagacagggt
     4681 ctggcaggca agctctatga ttgctaccag attaggacgg ctaactatcc tatcgctagt
     4741 gtgacctttc agaccgaacg tgtctttctg gacaagcacc cagaccttgc gacagcatgg
     4801 aacttggtag aagatacgga tactgagaca tggctgggac gtgagcgaga gccttatcag
     4861 ttctcacaac aggctgaact cacagtaagt ttggcacagg ctcaccatgc agacgacatt
     4921 gcgtgtttcc agacaaaggt ctttgatagc gactatgagg tggctcttcg ttacgcacgt
     4981 gaggctatcg ctgatgcgga cagcttgctt taccttttgg aacatggcgg agcggttatc
     5041 ggttcttgca cagtagatat ctcgaccgat gataactacc tttacggttt agctattgcc
     5101 ccagaccagc aacgaaaagg atatggtact tacttagtca aagctgtcat caatgacctt
     5161 atcacgaaaa acgacaaacc ttttcaaatc gctgtcgaag atgataacct catcgctaag
     5221 cggctgtatg aaactatcgg ttttacaaag cagacacaag tagtttacct agacccaaaa
     5281 gaaggttgac atgctattag aagaatttga aaatacctct gcagtcattg aaccgacgga
     5341 caaagcgatt gcaagaaaat tagaaagtag atcatgttaa aaaaattagt aagacaaaac
     5401 tggccttatg tgttgaccgc cattgctggg acaatcatgt ttatccttaa attttcccaa
     5461 ggaagctggc aggtagggat gatttggttg gctgcgacag cttattggct agtaaaattg
     5521 tatcaaaagc atcaagtcct aaagaatact cagaagtaat ggagaaacta tgattaaaat
     5581 ttacgatacc atgactcgca gtctgcgtga ctttgtgccc ttggaagagg gtaaggtcaa
     5641 gatgtatgtt tgcggtccga cggtttacaa ctatatccat atcggaaatg cccgtagcgt
     5701 tgtggctttt gatactatcc gccgctattt tgaatatcgt ggctttgatg tgacctacat
     5761 ctcaaacttt acggatgtgg atgacaagat tatcaaggct gctaatgaag ctggcatgac
     5821 aaccaaggaa ttgtctgata agtttatcgc agccttcaag gaagatgtgg caaaactggg
     5881 tgtcaagccg gctaccaaaa accctcgtgt tatcgactat atggatgaaa tcattgattt
     5941 tgtgcaggtc ttgattgaca agggttacgc ctacgaggcg gctggggatg tttatttccg
     6001 tgtggaaaag gctgaaaact atgctcgttt ggccaacaaa accctgtctg acttagaggc
     6061 tggtgcttct ggtcgggttg agggagaagg tcaactcaag gaacatcctt ttgattttgc
     6121 cctgtggaaa actgccaagt caggcgaagt ttcttgggga agtccttggg gagcgggtcg
     6181 tccaggttgg catatcgagt gttcggtcat ggcgacagag attttgggag ctaccattga
     6241 tattcacggt ggtggtgcgg acttggaatt ccctcaccat accaatgaaa tcgcccagtc
     6301 tgagtgcaaa acaggtcaaa cctttgccaa ctactggatg cacaatgcca tgctcaatat
     6361 caatgatgag aagatgtcca agtccttggg caacttcctg actgcccatg atatgttgga
     6421 acaaattgac ggtcaggtct tgcgcttctt cctatctacc cagcactacc gccgtccact
     6481 caactacact gagaaggcta tttcagatgc ggaaatcaat ctcaaatatc tgaaaaatac
     6541 ttatacacaa cctgtgcaaa actctgtgga taagtcaggt cttgaattgc atttggcagc
     6601 ctttgaagca gccatggatg atgatttcaa tgcggcaaat gggattacgg ctatctttga
     6661 ctttgccaag tggatcaact caggcaacta cgatgaaact gtaaaagaag cctttggaaa
     6721 catgctcgcc gtctttggta ttgtctttga agaagaagtc ttggacagcg agatcgaagc
     6781 cttgatagca gaacgtcaag cagcgcgtgc caatcgggac tttgcgacgg ctgaccgtat
     6841 tcgtgatgaa ttggcagccc agggcatcaa gctcttggat accaaggatg gtgtgaggtg
     6901 gacacgtgac taaggcagta gatgtcaatc tcatcaatgg aattgctctg gctttcgaag
     6961 gggatgctgt ctattccatg tatgtcagac ggcacttgat tttcaagggg ctgaccaagc
     7021 ctaacaaatt gcacggagag gctaacaaat acgtctcggc taaggctcag gcaggcctga
     7081 tttctgccct cttagaagct cagctattga ccgaaaaaga ggaagagatc tacaagcggg
     7141 ggcgcaatac caatagccac accaaggcca agaatgcgga cgtggtcacc tatcggatgt
     7201 ccacaggctt tgaggcggtc ttgggatacc tgcacatgac agagcagacg gagcgcctgg
     7261 atgaactggt aggttggtgt attgacaata tagaaagagg ataagatgaa cgagaaggaa
     7321 cttgcaggtt ggtttccgca ggctaagtta tcgcaggaag cggacgcaca gtcgcttgct
     7381 ttaggcgacg gtcgctatct gaatctggcg gatgcggatt tgacagagcg agaacgctat
     7441 ctcttgtcct tgttgtccca tcctcaagag cagaaaccgt caagcccttg gcagtcctat
     7501 ctacatggac agagctctct gccccaggcg gttgaagcta ttcaatttat ccatgtccac
     7561 ctttggtcgc agaaggacgc ccagttggat gcatggcaga ccatgatgac cgacctccta
     7621 cccagtcaat tggctcaggt acaactgtcg agtcaggatt acctttttat catcgaacaa
     7681 agtcgttgga cggactatca aaccattctg gcagacaccc tatcagcctt ggagtttgac
     7741 tttggcttgc ggttgacatt cctagtcggt caggtttggt ctcgtcaact tgcagatcgt
     7801 tggtctcaac tctatcaagc agaagcagcc ctctttgctc actggcgagc gcactaccat
     7861 caatcaaccg tcctatcctt tagtcaactc tttctttggg gacaaggcag agcaggtttg
     7921 gagtttggta tgataaaagc tagtatgcta cagttgattg accagcaaga tatgcaggac
     7981 atcattctag ccctgtggac agaaggagcc gtggtcacca agaccgctca gatcctctat
     8041 atccatcgta ataccctcca ataccgattg gacaagtggc aggatttgac cgggctccag
     8101 ctcaaagacc tgactgattt aagtttttgt tatcaagtat tactagatag gcttttttaa
     8161 tcttttgtgc aacttgtaca aaagattgtg ttctttttgt tcaccttgac ctagaaaaat
     8221 aaaacgcttt catttataat aaaactatca aagaaag
//
LOCUS       DASGBY010000087         8246 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.087, whole genome shotgun sequence.
ACCESSION   DASGBY010000087 DASGBY010000000
VERSION     DASGBY010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8246
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.087"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            5..586
                     /locus_tag="U1396_001444"
     CDS             5..586
                     /locus_tag="U1396_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5342630.1"
                     /translation="MYYEKNPTIAHDIHEIHVNLLDTPMSFMTDAGVFSKKMVDYGSQ
                     VLLKTLHFEKGASVLDVGCGYGPIGLTLAKVFNTKTTLIDINSRALDLATKNAERNGV
                     IAKIYQSNIYENVDETFNHIVSNPPIRAGKSVVHEVIAGAFQRLEAHGTLSIVIQKKQ
                     GAPSAKAKMEEVFGNCQIIKKDKGYYILESVKE"
     gene            583..1860
                     /locus_tag="U1396_001445"
     CDS             583..1860
                     /locus_tag="U1396_001445"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018543466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM5342631.1"
                     /translation="MRAVDLIQKKRDGLELSSEEIKWLIDGYVAGTVPDYQMSALAMA
                     IYFKGMSTREISDLTMSMVVTGEQIDLSAIPGIKVDKHSTGGVGDKVTLILAPLVASF
                     DIPVAKMSGRGLGHTGGTLDKLESIKGYQIEVSQADFIKQVQDTGVAVIGQSDNLVKA
                     DKLLYALRDVTATVDIIPLIASSVMSKKIAAGADAILLDVTVGEGAFMKTVEEARVLA
                     QTMVDLGKAVGRKTVAVLTDMSQPVGTSIGNRLEILEAIEILQGKGREDVTEFICELA
                     QIMLGLANVEKSIEEVRQHIDNGAALKKFEEMVRAQGGDLEDLYRPVQVTQQVPVLAE
                     EDGYIVGLPALEFGLFAMKLGAGRAVKTDNLDYETGIVFHKKVGEAVSKGEQIATIYA
                     NENISENMLTNFRKNVKIDKESVKTKEIIEIIS"
     gene            1876..2538
                     /gene="deoC"
                     /locus_tag="U1396_001446"
     CDS             1876..2538
                     /gene="deoC"
                     /locus_tag="U1396_001446"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEM5342632.1"
                     /translation="MKLNKYIDHTILKPETTQEQVEKILAEAKEYDFASVCVNPTWVA
                     LAAESLKDSDVKVCTVIGFPLGANTPAVKAFETKDVISNGADEIDMVINIGALKTGNY
                     DLVLEDIKAVVAASGDKLVKVIIEACLLTDDEKVKACQLSQEAGADYVKTSTGFSTGG
                     ATVADVALMRKTVGPDMGVKASGGARSYEDAIAFIEAGASRIGASSGVAIMNGAQADG
                     DY"
     gene            2525..2914
                     /locus_tag="U1396_001447"
     CDS             2525..2914
                     /locus_tag="U1396_001447"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM5342633.1"
                     /translation="METIDLIELAVKNSQKAYVPYSKFPVSAVLVAETGEIFTGVNIE
                     NASFGLTNCAERTAIFKAISEGVKDFSEIVIYGKTEKPISPCGACRQVMAEFFDKDLK
                     VTLVAKDKSTVETTVGELLPYSFTDLT"
     gene            2995..4062
                     /locus_tag="U1396_001448"
     CDS             2995..4062
                     /locus_tag="U1396_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEM5342634.1"
                     /translation="MNKKLVGLGLAAVAAVSLAACGNRASKSSSSEASSSADTSVKAA
                     IVTDIGGVDDRSFNQSAWEGLQEWGKAASLSKGNGYDYFQSASESDYITNLDSAVAGG
                     YNLVFGIGFALESAIAEVAPNNPNTHYVIVDSVVPDQDNVVSVGFADHEASYLAGVAA
                     AKSTKTNHVGFIGGMEGVIIDRFEAGFVAGAKSVNKDIKITVDYAGSFGDAAKGQTLA
                     AAQYAAGADVIFHASGGTGNGVFAAAKAENETRNEADKVWVIGVDRDQSAEGTYTSKD
                     GKSSNFVLASTLKQVGTSVKDIATKAAAGDFPGGQVLQFSLKDKGVELAETNLSEDAS
                     KAVADAKQAILDGKVEVPEKP"
     gene            4257..5792
                     /locus_tag="U1396_001449"
     CDS             4257..5792
                     /locus_tag="U1396_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342635.1"
                     /translation="MTKDYVIEMRNITKIFGEFVANDHINLNVRRGEIHALLGENGAG
                     KSTLMNMLAGLLEPTSGEIVINGQSVKIDSPSKAAQLGIGMVHQHFMLVDAFTVAENI
                     ILGSETTKGGVIDLKKAIAEIKELSTKYGLEVDPTAKVADISVGAQQRVEILKTLYRG
                     ADLLIFDEPTAVLTPAEIAELLKIMKALVEEGKSIILITHKLDEIRAVADSVTVIRRG
                     KSIETVAVEGATNQDLAEWMVGRSVSFKTEKVEASPKEVILSIKDLVVNENRGIPAVK
                     GLSLDVRAGEVVGIAGIDGNGQSELIQAITGLRKVKSGSITIKGEEVVGKTPRKITEM
                     QVSHVPEDRHRDGLVLPMTVAENFALQTYYKEPISKNGILNYNIINEKARALMEEFDV
                     RGASELVPIKALSGGNQQKAIIAREIDRNPDLFIVSQPTRGLDVGAIEYIRKRLIAER
                     DKGKAVLVVSFELDEILDVSDRIAVIHDGVIHGIVEPAKTNKQELGVLMAGGHIEKGE
                     EHA"
     gene            5785..6846
                     /locus_tag="U1396_001450"
     CDS             5785..6846
                     /locus_tag="U1396_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342636.1"
                     /translation="MLNKYKNLALPLMAVVSGILLGAIVMLVFGYDPIWGYEELFYSA
                     FGNIKSIGEIFRAMAPLVFTALGFAVASRAGFFNVGLSGQAYVGWVFAGWFALANPDL
                     PRPVLILGTVLIAMLAGGIAGAIPGILRAYLGTSEVIVTIMMNYILLYSCNYIIRDVF
                     ADSLMKNTDSTVNVSANASYQTEWLRALTDNSRMNIGIFFAIIAVFVIWFLLTKTTLG
                     FEIRSVGLNPTASDYAGMSAKRTIILSMIISGALAGLGGAIQGLGTFQNVYIQSGNLD
                     IGFNGMSVALLASNSPLGIPLAAFLFGVLSVGAPGMVRAQIPPELINVVTASIIFFIG
                     VKFIFEQLLKSRNKAKGAK"
     gene            6848..7801
                     /locus_tag="U1396_001451"
     CDS             6848..7801
                     /locus_tag="U1396_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342637.1"
                     /translation="MNVSILALLISQMLIYSAPLIFTSLGGVFSERGGIVNVGLEGIM
                     VIGAFAGVVFNIEFAGTFGNATPLLAIIVGGLAGVVFAAIHAMATINFRADHVVSGTV
                     LNLLAPALGVFLVKVIYNKGQTDSITESFGKFSFPILADIPIIGEIFFKNTSLMGYVA
                     IATAFLAWFILYKTKFGLRLRSVGEHPQAADTLGINVYAMRYAGVLIAGFLGGVGGAV
                     SAQSVNINFSATTIVGSGFIALAAVIFGKWNPIGAMLASLFFGLSQSLAVVGGQLPGL
                     KDIPTVYLQIAPYLITVIALSAFFGKAVAPKADGINYIKSK"
     gene            7945..>8246
                     /locus_tag="U1396_001452"
     CDS             7945..>8246
                     /locus_tag="U1396_001452"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342638.1"
                     /translation="MRRLVLNIAMSLDGFIARKDGSYDWIDGHGTDKYDTVSQFDNQK
                     FFRGWAKRPTSLLRVRVNISAQWLIGRFVRVLHSKSDLINCARGREDELFFYHLSSP"
BASE COUNT         2368 a         1405 c         1946 g         2527 t
ORIGIN      
        1 caatatgtat tacgaaaaaa atcctacaat agcacatgat attcatgaaa tccacgtaaa
       61 cttactagac accccaatgt ctttcatgac agatgcaggt gtttttagca agaagatggt
      121 tgattatggt agtcaagtgc ttttaaaaac ccttcatttt gaaaaagggg catcggtgtt
      181 ggatgttggt tgtggttatg gaccaattgg tttgacactt gctaaggtgt ttaacaccaa
      241 gacaacactg attgatatta atagcagagc tttggattta gctacaaaaa atgcagagag
      301 gaatggtgtt atcgctaaaa tttatcaatc caatatctac gaaaacgtgg acgaaacatt
      361 caatcatatt gtttcaaatc cacctattcg ggccggaaaa tcggttgtac atgaagtaat
      421 tgctggggcc tttcaacgct tagaggcaca cggaaccttg tccattgtca ttcaaaagaa
      481 acaaggcgca ccgagtgcta aagctaagat ggaagaggta ttcggcaact gccagattat
      541 aaagaaagat aagggttact acatccttga aagtgtgaaa gaatgagagc agttgattta
      601 attcaaaaaa agcgtgatgg cttagaacta tcgtctgaag aaatcaaatg gttgattgat
      661 ggatatgtag ctgggacagt accggattat caaatgtcag ccttagcgat ggcgatttat
      721 tttaaaggga tgtcaacgcg tgagatttct gatttgacga tgtccatggt tgtaacgggt
      781 gaacagattg atttgtctgc aattccaggc atcaaggtag ataagcattc tacaggtggt
      841 gtcggagata aggttacact cattttagcg ccattggtag caagttttga tattccagtt
      901 gcaaagatga gcggtcgtgg gcttggtcat actggtggaa ccttggataa gttagagtca
      961 atcaaaggat accagattga agttagtcaa gcagatttca tcaagcaagt tcaagatact
     1021 ggtgttgcag ttattggtca gtcagataat cttgtcaaag ctgataaact actctatgcc
     1081 cttcgtgacg tgacagcaac cgttgacatt attccgctga ttgccagctc agtaatgtct
     1141 aagaaaattg ccgcaggtgc ggatgcgatt cttctagatg tcacggtggg agaaggtgcc
     1201 ttcatgaaga ctgttgaaga agcacgggtt ctagctcaaa ctatggtgga tcttgggaaa
     1261 gcggttggtc gtaagacagt tgctgtttta actgacatgt ctcaaccagt tggaacttcg
     1321 attggaaatc gtttggaaat tttagaggct attgaaattt tacagggtaa aggtcgagaa
     1381 gatgttaccg aatttatctg tgaactagcc caaattatgt tggggcttgc taatgttgag
     1441 aaaagcattg aagaagtacg tcaacatatt gacaatggtg cagcattgaa gaaatttgaa
     1501 gagatggtcc gtgctcaagg tggtgactta gaagatttat atcgtccagt tcaggttaca
     1561 cagcaagttc cagttcttgc ggaagaggat ggctatattg tgggacttcc tgctttggaa
     1621 tttggtctct ttgcaatgaa acttggtgca ggtcgtgcag tcaagactga caatttagat
     1681 tatgaaacag gtattgtttt ccataagaaa gtgggggaag ctgtttctaa aggcgaacaa
     1741 atcgcaacga tttatgccaa tgaaaatatt tcggaaaaca tgcttacaaa tttccgaaaa
     1801 aatgttaaaa tagataaaga aagtgtaaaa acgaaagaaa tcatcgagat tatttcttaa
     1861 tgtacggaga aagctatgaa attgaataaa tatattgacc acacaatctt gaaacctgag
     1921 acaacacaag agcaggttga aaaaatttta gcagaagcaa aagaatatga ttttgcaagt
     1981 gtctgtgtta acccaacttg ggttgcttta gcagctgaaa gcttgaaaga tagtgatgta
     2041 aaagtttgta cggttattgg tttccctctc ggagcaaaca cacctgctgt aaaagcgttc
     2101 gaaacaaaag atgtaatttc aaatggagca gatgagattg acatggttat caatatcggt
     2161 gctctgaaaa ctggaaatta cgatttggtt ttggaggata ttaaagctgt tgtagcagca
     2221 agtggtgata aactagtcaa agttatcatc gaagcatgcc ttcttactga tgatgagaaa
     2281 gtgaaagctt gtcaattatc tcaagaagct ggtgcggact atgttaaaac atctacagga
     2341 ttttctacag gcggtgccac agtagcggat gttgccttaa tgagaaaaac agtgggtcct
     2401 gacatgggag tgaaggcttc aggtggtgca cgttcgtatg aagatgccat tgcctttatc
     2461 gaagcaggag cgtctcgtat tggtgcgtca tcaggcgtgg caatcatgaa tggagcacag
     2521 gcggatggag actattgatt taattgaatt agctgtaaaa aacagtcaaa aagcatacgt
     2581 accgtactca aagtttccag ttagtgcagt tcttgtagct gagactggag aaatatttac
     2641 aggtgtaaac attgaaaatg caagttttgg tttgaccaat tgcgctgaaa ggacagctat
     2701 tttcaaggct atttctgaag gtgtgaaaga tttttctgaa atcgtaattt atggtaaaac
     2761 agaaaaacca atatctcctt gtggagcttg tcgccaagtt atggcagaat tttttgataa
     2821 ggatttaaaa gtgaccttgg tcgctaaaga taaatcgaca gtcgagacga cagtcgggga
     2881 attactacca tattccttta cagacttaac atagtctgta tgacagtcat ttgactgtag
     2941 caatattact ctgcaacaat ttagttgcaa aaagattttt aggagggttc agaaatgaac
     3001 aagaaacttg ttggacttgg tctagcagct gttgcggctg tatctttggc tgcatgtggt
     3061 aaccgtgctt caaaaagcag tagctcagaa gcatcttcat cagcggacac atctgtgaaa
     3121 gctgctatcg ttactgacat tggtggtgtt gatgaccgtt catttaacca atctgcttgg
     3181 gaaggtcttc aagagtgggg taaagcagct agtctttcca aaggtaatgg ctacgattac
     3241 ttccaatcag ctagtgaatc agattatatc acaaaccttg attcagctgt tgctggtggt
     3301 tacaatcttg tgttcggtat tggttttgcc ttggagagtg cgattgctga ggttgcacca
     3361 aataatccta atacacacta tgtaatcgtg gatagtgttg ttccagatca agacaatgta
     3421 gttagcgtag gtttcgcaga ccatgaagca tcatatcttg ctggtgttgc tgcagctaaa
     3481 tcaactaaaa caaatcacgt aggtttcatc ggtggtatgg aaggtgttat catcgatcgc
     3541 tttgaagctg gtttcgttgc tggtgctaag tctgtaaaca aagacatcaa gattacagtt
     3601 gactatgcag gttcatttgg tgatgctgct aaaggtcaaa ctcttgcagc tgctcaatat
     3661 gctgcaggtg cagatgttat tttccacgct tctggtggta ctggtaacgg tgtatttgca
     3721 gctgctaaag cagaaaacga aactcgtaat gaagcagata aagtttgggt aatcggtgtt
     3781 gaccgtgacc aatcagcaga aggtacatac acttctaaag atggtaagtc ttctaacttt
     3841 gtattggctt caacattgaa acaagttggt acttcggtta aagatattgc aactaaggca
     3901 gctgcaggtg atttccctgg cggtcaagta cttcaattct cattgaaaga taaaggtgtt
     3961 gaattggcag aaactaatct ttcagaagat gcttctaaag cagttgcaga tgctaaacaa
     4021 gcaattttgg atggcaaagt agaagttcct gaaaaacctt aatgaatttc ttttcgacaa
     4081 ttccgattcg gcgacccgac ggggcgccgt tttcgggctg agatttttct cagtaaagcc
     4141 tatcagctat ggtaggtttt actgacaaaa atggtatagt tgatgaagag tttttaagta
     4201 ctcaaagtag tactgaagaa ttttcagaag gctatagtca gaaaggataa tagattatga
     4261 ctaaggatta tgtcattgaa atgcgcaata tcactaagat atttggtgaa tttgtagcaa
     4321 atgaccacat caatttgaat gtcagacgtg gtgaaatcca tgcccttctt ggtgagaatg
     4381 gtgcgggtaa atctactctg atgaacatgc ttgctggctt gttggaacct acaagcggtg
     4441 aaattgttat caacggtcaa tccgtgaaga ttgactctcc atccaaagca gcccaattgg
     4501 gtatcggtat ggtgcaccaa cactttatgt tggttgatgc tttcactgtt gctgagaaca
     4561 tcattcttgg ttctgaaacc accaaaggtg gcgtgattga ccttaaaaaa gctatcgcag
     4621 aaattaaaga actttctact aaatatggtc ttgaagttga tccaactgca aaggttgcag
     4681 atatttctgt gggtgcacag caacgtgtag aaatccttaa aacactttac cgtggagccg
     4741 accttttaat ttttgatgag ccgacagctg tattgacccc tgcggaaatt gcagagctct
     4801 tgaaaattat gaaagccttg gttgaagaag gtaaatctat tattttaatt acgcacaaat
     4861 tggatgaaat tcgtgcagtt gccgatagtg taacagttat tcgtcgaggt aaatcaatcg
     4921 aaacagttgc cgttgaagga gcaacaaacc aagatttggc tgagtggatg gttggacgtt
     4981 ccgtttcctt taaaacagag aaagttgaag cgagtcctaa agaagtcatt ttgtcaatta
     5041 aggatttggt tgtcaatgaa aaccgtggta ttccagcagt taagggcttg tcgcttgatg
     5101 ttcgagcagg tgaggttgtt ggtattgccg gtatcgacgg aaacggtcaa agtgagttga
     5161 ttcaggcaat cactggttta cgtaaggtaa aatctggctc aatcactatc aaaggtgagg
     5221 aagtagttgg taaaactcca cgtaaaatta cagaaatgca agtgagccac gttcccgaag
     5281 atcgtcatcg tgatggactc gttcttccga tgactgttgc tgagaacttt gcacttcaaa
     5341 cttactataa agaaccgatt tcaaaaaatg gtatcttgaa ctataatatc attaatgaaa
     5401 aagcacgcgc gttaatggaa gaatttgacg ttcgtggggc gagtgaactc gttccaatca
     5461 aggctctttc aggcggtaac cagcaaaaag ctattattgc gcgtgaaatc gatcgcaacc
     5521 cagacctttt cattgttagc caaccaacac gcggtttgga tgttggtgct attgagtata
     5581 ttcgtaagcg tctcattgca gaacgtgata agggtaaggc tgttcttgtt gtcagcttcg
     5641 aattggatga aattttggat gtatcagata gaattgctgt tatccatgat ggtgtcatcc
     5701 atggtattgt tgaacctgct aagaccaata aacaagagtt aggtgtcttg atggcaggtg
     5761 gacatattga gaagggagaa gaacatgctt aataaatata agaatttggc ccttccatta
     5821 atggctgtgg tcagtggtat cctacttgga gcgattgtca tgcttgtttt tggctacgat
     5881 ccaatttggg gctatgaaga gttattctat tcagcttttg gtaatatcaa atcaattggt
     5941 gaaattttcc gtgcaatggc accacttgtt ttcactgctc tcggtttcgc agtagctagt
     6001 cgtgcaggtt tcttcaacgt tggtttgtct ggtcaggcct atgttggttg ggtttttgct
     6061 ggatggtttg ccttggcgaa tcctgactta ccacgtccag ttttgatttt gggaacagtc
     6121 ttgattgcta tgttggcagg cggtattgct ggagctattc caggtattct acgtgcctat
     6181 ttgggaacaa gtgaagttat cgttacgatt atgatgaact acatcttact ctattcatgt
     6241 aactatatca ttcgtgatgt atttgctgat agtttgatga agaatacaga ctcgacagtt
     6301 aacgtgtcag caaatgcctc ttaccaaaca gagtggctcc gtgcattgac agataactca
     6361 cgtatgaata ttggtatttt ctttgccatt attgcagttt ttgtgatttg gttcctattg
     6421 accaaaacga ctcttggttt tgagattcgc tcagtggggc ttaacccaac agcatcggat
     6481 tatgcgggta tgtctgcgaa acgtacgatt attctatcta tgattatttc aggtgctctt
     6541 gcgggtcttg ggggagctat ccaaggtttg ggtactttcc aaaacgttta tatccaaagc
     6601 ggtaacttgg atattggttt taatggtatg tcagtagcgc ttttagcttc taattcaccg
     6661 ttaggtattc cattggctgc ctttctattc ggtgttcttt ctgtcggtgc cccaggtatg
     6721 gtacgtgcac agattccacc tgaattgatc aacgttgtta cggcatcaat cattttcttt
     6781 atcggtgtga aatttatttt tgaacaatta ttaaaatcta gaaataaagc gaaaggagcg
     6841 aaataagatg aatgtttcaa ttcttgcctt actcatttcg caaatgttga tttattcagc
     6901 acccttaatc tttaccagtc ttggaggagt tttctctgaa cgcggtggta ttgtaaacgt
     6961 tggtctagaa ggaatcatgg ttatcggtgc ctttgctggt gttgttttca atatcgaatt
     7021 tgcagggaca tttggtaatg ctactccatt attagctatt attgtaggag gtcttgctgg
     7081 tgttgtcttt gcagctattc atgcgatggc gacgattaat ttccgtgcag accacgttgt
     7141 atcaggtacg gtgttgaacc ttttggctcc agcattggga gttttcctag tcaaggttat
     7201 ctataataag ggtcaaactg atagtattac tgaatcattt ggtaaatttt cattccctat
     7261 cttggcagat attccaatca ttggtgaaat tttcttcaaa aatacaagct tgatgggtta
     7321 tgtagctatt gcaacagcat ttcttgcttg gttcatcctt tataaaacca agttcggttt
     7381 gcgccttcgt tcagtaggtg aacatccgca agcagcggat actttgggaa tcaatgtcta
     7441 cgctatgcgt tatgcaggtg tgttgattgc tggtttcctt ggtggtgttg gtggagctgt
     7501 aagtgctcaa tcagtgaata tcaacttctc tgcaacaaca atcgtaggtt caggtttcat
     7561 cgctctagca gctgtaattt ttggtaagtg gaatccaatt ggcgctatgc ttgccagtct
     7621 attcttcggt ctttcgcaaa gtttggcagt agtgggtgga caattaccag gattgaaaga
     7681 tattccaacg gtttatcttc aaattgcacc atatttgatt actgttattg ctctgtctgc
     7741 tttctttggt aaagcagtcg ctcctaaagc agacggtatc aactatatca aatctaaata
     7801 aaaaggtcca gtggaccttt ttatcatgtt ctttgctgta caggaaatga ataattgtcc
     7861 tattcaaagg aagaggagtt atagggactt ttggttgaga atagggagaa tagcttgtca
     7921 ctaaggtatg aaatgaggct aattgtgaga cgattggtgt taaacattgc aatgagttta
     7981 gatggattta ttgcacgtaa ggatggaagc tacgattgga ttgacggaca tggtaccgat
     8041 aaatacgata cggtctcaca gtttgataat caaaaattct ttagaggctg ggcaaaaaga
     8101 ccaacctcgc ttctcagggt tcgtgtcaac atctcagcgc agtggttgat tggcagattt
     8161 gttcgtgttt tacactccaa atctgaccta atcaactgtg cgagggggcg ggaagacgaa
     8221 ctctttttct accatttgtc aagtcc
//
LOCUS       DASGBY010000088         8212 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.088, whole genome shotgun sequence.
ACCESSION   DASGBY010000088 DASGBY010000000
VERSION     DASGBY010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8212
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.088"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            119..1891
                     /locus_tag="U1396_001453"
     CDS             119..1891
                     /locus_tag="U1396_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEM5342639.1"
                     /translation="MKEFYIGDQFYLDGEPFKILSGAIHYFRVHPDDWYHSLYNLKAL
                     GFNTVETYVPWNMHEPRKGEFCYEGILDIERFLKLAQELGLYAIVRPSPYICAEWEWG
                     GLPAWLMKEELRVRSSDSVYLQHLDEYYASLIPKLAKLQLAQGGNVLMFQVENEYGSY
                     GEEKEYLRSVAGLMRKHGLTAPLFTSDGSWRATLRAGTLIEDDVFVTGNFGSKARENF
                     ANMTAFFNEHQKNWPLMCMEFWDGWFNRWGDEIIRREPEEMVDSVMECIELGSLNLYM
                     FHGGTNFGFMNGCSARGQIDLPQVTSYDYDAILDEAGNPTKKFYILQQRLKEVYPELE
                     YAEPLVKEAKAFSDVSLHDKVSLFATLENVSGCVKGFYPKNMEELDQSTGYILYRTEL
                     ERDKTEAERFRVVDARDRIQIYADGKFVATQYQTEIGDDVELDFKDDKLTLDILVENM
                     GRVNYGHKLTAPTQSKGLGRGAMADLHFIGHWETYPLPLDSVEDLDFSKGWEEGQAAF
                     YRYQFELDELADTYLDMTGFGKGVVFVNNVNIGRFWEKGPILYLYIPKGYLKKGANEI
                     VVFETEGKYREKIHFSQRPVIKDL"
     gene            1945..2430
                     /locus_tag="U1396_001454"
     CDS             1945..2430
                     /locus_tag="U1396_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HEM5342640.1"
                     /translation="MAIIATRIDGRLIHGQVANLWTTKLNIGRIMVIDDAVAQNDIEK
                     QGLKLACPPGVKLSILPIEKAANNIKEGKYDSQRLLIVARRPENFLRLVEYGVELPEL
                     NVGNMSQTPETRSVTRSINVVDKDIADFDALAAKGVKLFAQMVPGDSPKDFMPLLDKV
                     R"
     gene            2469..3371
                     /locus_tag="U1396_001455"
     CDS             2469..3371
                     /locus_tag="U1396_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5342641.1"
                     /translation="MMQWWQILLLTLYSAYQICDELTIVSSAGSPVFAGFITGLIMGN
                     MEVGLLIGASLQLVVLGVGTFGGASRIDATSGAVLATAFSISQGLDPEIAISTIGVPV
                     AGLLVYTDILGRFTTTFFAHRVDAAIERFDYAGIERNYLLGAIPWALSRALPVFLALA
                     FGGGIVETLVTTIELPEYKWIAAGLTLAARMLPGLGFAILLHYLPLKRNLHYLAVGFA
                     LTAMLTVLYGNVSALGGAVAGIVGTLPEDAGVSFVNNFKGLSMIGIAIVGAFLSVIHF
                     KNSQKVTVVAPSNSESGEIEDDEI"
     gene            3358..4176
                     /locus_tag="U1396_001456"
     CDS             3358..4176
                     /locus_tag="U1396_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM5342642.1"
                     /translation="MTKSNYKLTKEDFNQINKRSLFTFQLGWNYERMQASGYLYMILP
                     QLRKMYGDGTPELKEMMKLHTQFFNTSPFFHTIITGIDLALEESDGVASKDAVNGVKT
                     GLMGPFAPIGDSIFGSLVPAIMGTVAATMGKEGSPVGIFLWVAVAIAYDIFRWKQLEV
                     AYKEGTKLITTMRDRLTALVDAASVMGVFMMGALIATMINFEVTWAPAIGEKVIDIQD
                     ILNTIFPRLVPAIFTGFVFWLLGRRGMTSTKAILIIIVLALGLSAIGHFLFGMV"
     gene            4176..4577
                     /locus_tag="U1396_001457"
     CDS             4176..4577
                     /locus_tag="U1396_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5342643.1"
                     /translation="MVRSLVLVSHGIFCEELKKSTEMIMGPQEDIYTVALLPEEGPED
                     FQKKFEETIAGLEDFVVFADLLGGTPANVVSRKLIEGGQFDLYAGMNMPMVIGFLNGV
                     LLGEAVDYVEFGTSNLVHVNSLLTSDEDDDE"
     gene            4793..5794
                     /locus_tag="U1396_001458"
     CDS             4793..5794
                     /locus_tag="U1396_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEM5342644.1"
                     /translation="MIEVKTFGGQAKLYCLENKNGMQVTLTDFGARVVEVLLPVEENG
                     GLRNVSLAAKSDDDYRKTDLYPGSSIVPVAGRISGAQAEIKGTSYQFTENEPGRTLHG
                     GIDTANEQYWDVALDHEKNQVTFGIVLKDGFNGFPGDVRVEAIYGLTDQNELTIDYRA
                     VSSKDTIFNPTNHIYFNLTGDFQQSVAEHEIRIAANRYAPLGEDNLPTGVLEDVTGTP
                     FDFRERARFAQGFDSQHPQNILVKGYDHPWLLEQVEVPIEVVSPDGKISLRVRTNQAS
                     VVIYTYNYPVEALAAYHGAFSLECQALPNACNLGGFGSILLEKDEEFLSQTVYQFTW"
     gene            5899..6156
                     /locus_tag="U1396_001459"
     CDS             5899..6156
                     /locus_tag="U1396_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011074664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1912 family protein"
                     /protein_id="HEM5342645.1"
                     /translation="MMTKEQEFLKEFEAWVNTQVMVNEMAVEESRRVLEEDKDERAAD
                     AYIRYESKLDAYRFIQGKFANYHAGKGFHDLPDELFGQRHY"
     gene            6171..6557
                     /locus_tag="U1396_001460"
     CDS             6171..6557
                     /locus_tag="U1396_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5342646.1"
                     /translation="MAKKKVNRKKQLKKQLADLKRAGRVGLERAAEVVETVAHKAEAV
                     VEHAVEQVKEVVAEVTSSATSLEDFLALPELEGIAAARLETFYEAGIQSVADFANHTE
                     KELLALKGIGPATIKQLKEKGIELKA"
     gene            6799..7188
                     /locus_tag="U1396_001461"
     CDS             6799..7188
                     /locus_tag="U1396_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5342647.1"
                     /translation="MLHHVEIYVSNLETSRAFYDFLLTKLGYSLYQEWEEGLSYKKAE
                     QYLVFVQTPQDFLKAGYHRCRTGLNHLAFHVGTPDDVDQWRKEFLTRRVKLLYNDRYP
                     YAGGPDHYALYLEDPDGIKIELVGEVT"
     gene            7185..7760
                     /locus_tag="U1396_001462"
     CDS             7185..7760
                     /locus_tag="U1396_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM5342648.1"
                     /translation="MNLVIIGAQASGKMTIGQEVAKLTGMTLFHNHDSIDFSLRFIPE
                     FSEDMFDLNTRITFAVYDVFARSGRPLIGTALINFKNLIEVQFLTTVQTIFHYHGQEI
                     LFVELETALEERLRRNRTENRLTHKPLKRHIEVSEAEILSTADTCQYTSLGIPEGIQH
                     YLKINNTHLTANEVAQLIIKKMEELEQKQTK"
     gene            7924..>8212
                     /locus_tag="U1396_001463"
     CDS             7924..>8212
                     /locus_tag="U1396_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342649.1"
                     /translation="MKMLNKFTENSKDLRNELTSWFVIISLAFLLFLSIPWLVQKTLY
                     FTLSKPFEAQRVAITKSNKTSDTASGVEGTYINNIPFNDFEKLMNFSNVSFK"
BASE COUNT         2361 a         1415 c         1958 g         2478 t
ORIGIN      
        1 ttttcacttt ataaaggtga taagaaatgg taaaaaaatt tttaaaaagt actggacata
       61 accacaaata agtgttagta tattaataga aaggtaagcg gttgcatcgg aggaagaaat
      121 gaaagaattt tatattggag accaatttta tttggacggt gaacccttta agattttatc
      181 aggcgcgatt cattattttc gtgtccatcc tgatgattgg taccattctt tgtataactt
      241 aaaggccctt ggttttaata cggttgaaac ctatgtccct tggaatatgc atgaacctcg
      301 aaagggtgag ttttgttacg agggtatatt ggatattgag cgatttttga aattggctca
      361 agaattaggg ctttatgcaa ttgtacgtcc ttccccttat atttgtgcgg agtgggaatg
      421 gggtggcctc cctgcttggt tgatgaagga agagcttaga gtacgttcga gtgattcggt
      481 gtacttgcag cacttagatg aatattacgc ttctcttatt cctaaattgg ccaagctcca
      541 actcgcacag ggtggaaatg tacttatgtt ccaagtggaa aatgagtatg gttcttatgg
      601 tgaggagaag gagtatctaa gatcggtggc tggcttgatg cgtaaacatg gtctaactgc
      661 tcccttgttt acctcagacg gttcttggcg agcaacatta cgtgcaggaa cactgataga
      721 ggacgatgta tttgtaacag gaaactttgg ttctaaagct agagagaatt ttgcaaatat
      781 gacggcattc tttaatgaac atcagaagaa ttggccactc atgtgtatgg aattttggga
      841 tggttggttc aatcgttggg gcgatgaaat tattcgtaga gagccggagg aaatggttga
      901 ttcggttatg gaatgtatcg aattgggctc cttgaatctg tacatgttcc atggtggaac
      961 aaattttggt ttcatgaatg gttgctctgc tcgtggtcaa attgatttgc ctcaggtaac
     1021 ttcttatgat tatgatgcta tattggatga agctggaaat cctactaaga agttctatat
     1081 tttgcaacaa cgtttgaaag aagtctatcc tgaattagag tatgcagaac cgcttgtaaa
     1141 agaggcaaaa gctttttcag atgtgtcgct tcatgataag gtgagtttat ttgctactct
     1201 agaaaatgta agcggttgcg taaaagggtt ttatcctaag aatatggaag aacttgatca
     1261 gtcaacaggt tatattttat atagaacaga gttggagcgg gataagacag aagcggaacg
     1321 tttccgagta gttgatgcgc gtgaccgtat ccaaatttat gcagatggaa aattcgttgc
     1381 aactcagtat cagacagaga ttggtgacga tgttgaattg gattttaaag atgacaagct
     1441 aacattagat attttggtag aaaatatggg acgtgtcaat tatgggcaca aactaacggc
     1501 tcctacccag tctaaagggc ttggtcgagg tgcgatggct gatttacatt ttattggtca
     1561 ttgggaaacc tatcctttgc ctcttgattc agttgaggac ctggatttta gtaagggctg
     1621 ggaggaaggt caagctgctt tctatcgtta tcagtttgaa ctggatgaac ttgcggatac
     1681 ttacttagat atgacaggtt ttggtaaggg agttgttttc gttaataatg taaatattgg
     1741 acgtttttgg gaaaaaggac caatcctcta tctctatatt ccaaaaggat acttaaagaa
     1801 aggagcgaat gaaatagttg tcttcgagac agaaggaaaa tatagagaga agattcattt
     1861 ttcacaaaga cccgttataa aagacttgta gaaattttaa tcggtttctg ctcaaaagat
     1921 ttatgaagaa aaggagaaca ctgtatggca attattgcta cgcgtattga tggtcgtttg
     1981 attcacggtc aggttgctaa cttatggacg acgaaattga acatcggtcg tattatggtt
     2041 atcgatgatg ctgttgctca aaatgacatt gaaaaacaag gactgaaatt agcatgtcct
     2101 ccaggcgtaa aattatcgat tttaccgatt gaaaaggctg ctaataatat taaggagggc
     2161 aagtatgata gtcaacgtct cttgattgtt gctcgtcgtc cagaaaactt ccttcgcttg
     2221 gtagagtatg gggttgagct ccctgagttg aacgtaggga atatgtctca aactccggaa
     2281 actcgttctg taactcgttc tattaacgtt gtagataagg atattgcaga ttttgatgcc
     2341 ttggcggcta agggtgtaaa attatttgca caaatggtac ctggcgattc accaaaagac
     2401 tttatgccat tattggataa ggttagataa cattcggata tttttgaaaa atttaaagga
     2461 ggatcactat tatgcaatgg tggcaaatat tacttctaac gctctactct gcttaccaga
     2521 tttgtgacga gctgacaatt gtatcgtcag caggttcacc agtctttgca gggtttatca
     2581 ctggtttaat catggggaac atggaagttg gcttgctaat tggtgcaagt ttgcagctag
     2641 ttgtcttggg agttggtact ttcggtggtg cgtcacgtat tgatgcaaca tctggtgcgg
     2701 ttcttgcgac agctttctca atttcacaag gtttagatcc agaaattgct atttccacta
     2761 ttggcgtacc agttgcagga ttgttggtct atacagatat tttgggtcgt ttcaccacta
     2821 ctttctttgc tcatcgtgta gatgcagcaa tcgaacgttt tgactatgct ggtattgaac
     2881 gcaactacct tcttggtgca attccttggg cactttctcg tgcacttcca gtttttcttg
     2941 cccttgcttt tggtggtggt attgtagaaa ctcttgtcac tacgattgag ttgcctgaat
     3001 acaaatggat tgcagcaggc ttaactcttg cagctcgtat gcttccaggt cttggatttg
     3061 caatcttact tcactatctt ccacttaaac gtaaccttca ctacttggca gtaggtttcg
     3121 ctcttacagc tatgttgact gttctttacg gtaacgtatc agctttgggt ggtgcagttg
     3181 ctggtatcgt tggcactctt cctgaagatg caggcgtaag ctttgtcaat aacttcaaag
     3241 gtttgtcaat gattggtatc gctattgtgg gtgcattcct ttcagtgatt cacttcaaaa
     3301 atagccaaaa agtaactgtg gttgctccat caaattcaga aagtggggaa attgaagatg
     3361 acgaaatcta attacaaatt aacaaaagaa gattttaatc aaatcaacaa acgtagcttg
     3421 ttcactttcc aacttggttg gaactatgag cggatgcagg catctggcta cctctacatg
     3481 attttgccac aattgcgtaa aatgtatgga gatggtactc ctgagttgaa ggaaatgatg
     3541 aaattgcata ctcagttctt caatacttca ccattcttcc ataccatcat cacaggtatt
     3601 gacttggcac ttgaagaaag tgatggcgtt gcttctaaag atgcggttaa cggtgttaag
     3661 acaggtttga tgggaccatt tgctccaatc ggtgactcaa tctttggttc tcttgttcca
     3721 gcgattatgg ggactgtggc tgctactatg ggtaaagagg gatcgccagt tggtatcttt
     3781 ctttgggtag cagtagccat tgcctatgat attttccgtt ggaaacagtt ggaagttgcc
     3841 tacaaagaag gtactaagtt gattacaacc atgcgcgatc gcttgacagc tctcgttgat
     3901 gcagcatctg taatgggtgt cttcatgatg ggagccctga ttgcaactat gattaacttt
     3961 gaagtgactt gggctccagc tattggagaa aaagtgattg atattcaaga cattttgaat
     4021 accatcttcc cacgcctagt acctgcaatc tttacaggat ttgtcttctg gcttcttggt
     4081 cgtcgtggta tgacttcgac taaagctatc ttgattatta ttgtgcttgc actcggcttg
     4141 tcagcaatcg gtcacttcct atttggtatg gtataatggt tagaagttta gtattagtaa
     4201 gtcatggcat cttctgcgag gagttgaaaa aatctactga aatgattatg ggtcctcaag
     4261 aggacatcta cacagtagct ttattaccag aagaaggtcc agaagacttc cagaaaaaat
     4321 ttgaagaaac aattgcagga ttggaagatt tcgttgtctt cgcagacttg ttgggcggta
     4381 caccagccaa cgttgtatca cgaaaattga ttgaaggtgg gcagtttgac ctctatgcag
     4441 ggatgaacat gccaatggtt atcggtttct tgaacggcgt cctgctggga gaggctgtgg
     4501 actatgtaga atttgggaca agcaacctag ttcatgtcaa tagtctatta acaagtgatg
     4561 aagatgacga tgagtgaaac agtttgggga actgtttcaa ctggtcacct tgaaatgaaa
     4621 gagtgaccaa agacagcccg agcctagaaa taagagagtg aggctaactc agccgattgt
     4681 tacagacgga tttgaatttc gttaattata aaatgttcta tagttgatag gctttaagta
     4741 tcctgaggga gttgcaatag tgactccctc atttggcttg tgaggaaaag aaatgattga
     4801 agtgaaaaca tttggtggac aagcaaaact gtattgcttg gaaaacaaga atgggatgca
     4861 ggtaaccttg acggattttg gtgccagagt ggtggaagtg cttttgccag tagaagaaaa
     4921 tggcggtcta cggaatgtca gtttggctgc caagtcggat gatgattacc gcaagacaga
     4981 tttgtaccct ggttcaagca ttgtcccagt agcggggcgt atttcaggtg ctcaggctga
     5041 gataaaggga accagttatc agttcacaga aaatgagcca ggtcgtacct tgcatggtgg
     5101 gattgacacg gcaaatgaac agtactggga tgttgctcta gatcatgaga aaaatcaagt
     5161 tacctttggg attgtcttaa aagatggttt caatggtttt ccaggagatg tgagagttga
     5221 ggctatttat ggtctaacag accagaatga gttgacgata gattatcggg cggtgtctag
     5281 caaagatacg attttcaatc cgaccaatca catctatttc aacttaacgg gggattttca
     5341 gcagtcagtg gcagagcacg agattcgaat tgcggctaat cgctatgctc cgcttggtga
     5401 ggataatctg ccaaccggtg tcttagagga tgtgacagga acaccgtttg actttaggga
     5461 gagagcaaga tttgctcagg gctttgacag ccagcaccct cagaatatcc ttgtgaaagg
     5521 ttacgaccat ccatggcttt tggaacaggt agaggttccg attgaagttg tcagcccaga
     5581 tgggaaaata agtctgcgcg tgcgaaccaa tcaggcatca gttgtcatct acacctacaa
     5641 ttatcctgtt gaagctttgg ctgcctacca tggtgccttt agcttggaat gccaggctct
     5701 gccaaatgct tgcaacctag gcggttttgg ttctattttg ctggaaaaag acgaggaatt
     5761 cttgtcccag actgtttatc aatttacttg gtaagaagga gagctctaac tgtgttgcag
     5821 ttaggctttt cttgtgtttt ctaaaaaata tggtataata aaccggtgtg tttcaaacga
     5881 agcagacgaa agaggaaaat aatgacaaaa gaacaagaat ttttaaaaga atttgaggct
     5941 tgggtcaaca ctcaggtcat ggtaaacgag atggcggttg aagaaagtcg tcgtgtcttg
     6001 gaagaagaca aggatgagcg tgcagcggat gcttatattc gttatgagag caagctggat
     6061 gcctatcgat tcattcaagg gaaatttgcc aactaccatg ctggcaaagg ttttcatgat
     6121 ttgccagatg agttgtttgg tcaaaggcat tattaaggag aggagttaac atggcaaaga
     6181 aaaaagtaaa tcgaaaaaaa cagttgaaaa aacaattagc agacttgaaa cgtgcaggtc
     6241 gtgtaggtct tgaaagagct gcagaggtag tagagacagt tgctcacaag gctgaggctg
     6301 tagtagagca tgctgtggaa caagtgaaag aagttgtagc agaggtgact tcttcagcga
     6361 cttcattgga agactttttg gcacttcctg agttggaagg cattgcggca gcacgtttgg
     6421 aaaccttcta cgaagcgggt attcaatctg tggctgattt tgcaaaccat acagaaaaag
     6481 agctcttggc tcttaaaggc atcggtcctg caactatcaa gcagttgaaa gaaaaaggga
     6541 ttgagttgaa agcttaaatc ccttgctttt caaggtgcaa tttgttacaa taaagccatt
     6601 cagaggtgtt ttgatctcca tttgtcacag gaagcggtgg tactgagaaa tccgcacaaa
     6661 tgtcaaaact ggttgctgat gatgtgaatc gaataagcag agtgcagata atgtatctga
     6721 acaagggtgg taccgcggaa taacttcgtc cctgtctagc aagtctaggc ggggattttc
     6781 atttggaaag gagaaaatat gttacatcat gttgaaattt acgtttctaa tttggaaacc
     6841 tcgcgtgcat tttacgactt tctcctgacc aagctgggat actcgctcta tcaggagtgg
     6901 gaggaagggc tatcttataa aaaagcagag cagtacttgg tctttgtcca aacgccacag
     6961 gacttcttaa aggcaggtta tcaccgctgt cgcacaggtc tcaatcatct agcttttcat
     7021 gtgggaacac ctgatgatgt tgaccaatgg cggaaggaat ttttgaccag acgagtcaaa
     7081 ttgctttaca atgaccgcta tccctacgcg ggaggaccag accactacgc cctctatttg
     7141 gaagacccgg acgggattaa gatagagttg gtgggggagg taacatgaat ttagtaatta
     7201 ttggagcaca agcttctggc aagatgacca ttgggcagga agttgcgaaa ttgacaggga
     7261 tgaccctttt tcataatcac gattcgattg attttagcct acgttttatt cctgaatttt
     7321 ctgaggatat gtttgacctc aatacacgta ttacatttgc tgtttatgat gtgtttgcta
     7381 ggtcaggccg cccactaatt ggaactgcct tgattaattt taaaaatctc atagaggttc
     7441 aattccttac aactgttcag acgatttttc attatcatgg tcaggaaatt ttatttgttg
     7501 agttggagac tgctttggaa gaacgtctgc ggcgtaatcg gacagagaat cgactgaccc
     7561 ataaaccttt gaaacgacac attgaagttt cagaggctga gattctctct acagctgata
     7621 catgtcaata tacctcatta ggcattccag agggcattca gcattatctc aaaattaata
     7681 atactcacct tactgctaat gaagttgctc aactgattat caaaaaaatg gaggaacttg
     7741 aacaaaaaca aacgaaatag cctttccgtt gaggggcgaa acagaatata atccagatag
     7801 gcataaacta tttctattag tactatcagt tcagtcctgc tactatatta catcatgctt
     7861 atctcatgga gcatactatt ttgcgtgcag tgtattaaaa tatgaattag gagtatactg
     7921 tctatgaaaa tgttaaacaa gttcacagag aattcaaaag atttgagaaa tgagttgact
     7981 agctggtttg tcatcatttc gctagccttc ttattattct tgagcattcc ttggttggtg
     8041 caaaagactt tatattttac tttatcaaaa ccatttgaag cacaaagagt agccatcaca
     8101 aaatcaaaca aaacttcaga tactgcctct ggagttgaag ggacctacat caataatatt
     8161 ccctttaatg attttgaaaa attgatgaat tttagcaatg tgtctttcaa aa
//
LOCUS       DASGBY010000089         7994 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.089, whole genome shotgun sequence.
ACCESSION   DASGBY010000089 DASGBY010000000
VERSION     DASGBY010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7994
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.089"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..451
                     /locus_tag="U1396_001464"
     CDS             <1..451
                     /locus_tag="U1396_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEM5342650.1"
                     /translation="GLAVFLVILLFHLLKWDGIQIAALSAVFSLREDFGKSVHFGSSR
                     VLSNSIGGFYALLYFILSDLFSHNFWVTLIFIPIFTMLTIMTNVSFNNAPGVISGVAT
                     MLIIALSVPAGDSIFYALQRVFETFVGVFVSVIVNYDIDKIKKRFLS"
     gene            531..902
                     /locus_tag="U1396_001465"
     CDS             531..902
                     /locus_tag="U1396_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5342651.1"
                     /translation="MREKEFRRSLAIFPIGSVMKLTDLTARQIRYYEDHGLIKPVRNE
                     GNRRLYSLNDMDLLLEIKDFLDEGLNIAAIKKEYANRKAKEKVQAEQKTLTDEDVRRI
                     LHDEFSRQGRFSSPSSIFRSS"
     gene            929..2275
                     /gene="glnA"
                     /locus_tag="U1396_001466"
     CDS             929..2275
                     /gene="glnA"
                     /locus_tag="U1396_001466"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009731741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEM5342652.1"
                     /translation="MVVTTADIKRDIKEKNVTFLRLMFTDIMGVMKNVEIPATEEQVE
                     KVLSNKVMFDGSSIEGFVRINESDMYLYPDLNTWTIFPWGDENGRVAGLICDIYTTEG
                     EPFAGDPRGNLKKSLRRMEKEGFSSFNLGPEPEFFLFKMDEQGNPTLEVNDKGGYFDL
                     APTDLADNTRREIVNVLTEMGFEVEASHHEVAVGQHEIDFKYADVLKACDNIQIFKLV
                     VKTIARKHGLYATFMAKPKFGIAGSGMHCNMSLFDKDGNNAFFDPEDPRGMQLSETAY
                     HFLGGLIKHAYNYTAITNPTVNSYKRLVPGFEAPVYIAWAGKNRSPLVRVPASRGMGT
                     RLELRSVDPTANPYLAMAVLLEVGLDGIEHKIEAPAPVESNIYAMSDEERREAGITDL
                     PSTLHNALKALRKDDVVRSALGDHIYTNFLEAKKIEWASYATYVSQWEIDNYLDMY"
     gene            complement(2598..4277)
                     /locus_tag="U1396_001467"
     CDS             complement(2598..4277)
                     /locus_tag="U1396_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM5342653.1"
                     /translation="MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKF
                     PEDDLLGIDYVIPDYSYIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLA
                     LALIRGKLEEHGLLRDATLHEINHNTELTFKHLKVSFFRTTHSIPEPLGIVVDTPQGK
                     IVCTGDFKFDFTPVGEPADLHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIM
                     KLIEGIHGRIIFASFASNIFRLQQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKV
                     PKDTFIEPNEIKEYPASEIMILCTGSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSS
                     PIPGNTTGVNKLINILIEAGVDVIHGKINNIHTSGHGGQQEQKLMLRLIKPKYFMPVH
                     GEYRMQKIHASLAVDTGVPKDNIFIMENGDVLALTKDSARLAGQFNAQDIYVDGNRIG
                     EIGAAVLKDRRDLSEDGVVLAVATVDFNSKMILAGPDILSRGFIYMRESGELIRESQR
                     VLFNAIRIAMRNKDANIQTVNGAIVNALRPFLYEKTEREPIIIPMILTPDR"
     gene            complement(4281..4511)
                     /locus_tag="U1396_001468"
     CDS             complement(4281..4511)
                     /locus_tag="U1396_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000639444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HEM5342654.1"
                     /translation="MIYKVFYQESKISPRREQTRALYLDIDAASELEGRIIARELVET
                     NRPEYNIEFIDLLSDNHLEYEKEHADFKITEF"
     gene            4958..5641
                     /gene="tsaB"
                     /locus_tag="U1396_001469"
     CDS             4958..5641
                     /gene="tsaB"
                     /locus_tag="U1396_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEM5342655.1"
                     /translation="MKILALDSSNQALSVALVEDGRLQAETLLAVKKNHSISLMPVVD
                     FLVAQVGWTPKDLDRIVVAEGPGSYTGLRVAVATAKTLAYTLKIDLVGLSSLQSLVPP
                     SLTGLVVPLIDARRNCVYAGLYENGRAVEADKYWSFEDLLSSLSGKEDITFVGEVANF
                     IEQIEQALPTAQYQASLPSAYQLAVIGQDLPAVDVTSFEPNYLKRVEAEENWLKDNQA
                     GSESYIKRV"
     gene            5638..6078
                     /gene="rimI"
                     /locus_tag="U1396_001470"
     CDS             5638..6078
                     /gene="rimI"
                     /locus_tag="U1396_001470"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEM5342656.1"
                     /translation="MIEIKYYDGQENLSEAVLAVMESVYEQSPWTLEQIVTSLASQDE
                     DYYLAYEGQELVGFLAVQTVLDEMEILQIAVKADFQRLGIASQLMAAVMDWEGDIFLE
                     VRESNSAAQALYTRQHFTKIGKRKDYYRHPVEDAVLMKRERDER"
     gene            6068..7075
                     /gene="tsaD"
                     /locus_tag="U1396_001471"
     CDS             6068..7075
                     /gene="tsaD"
                     /locus_tag="U1396_001471"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEM5342657.1"
                     /translation="MKDRLILAIETSCDETSVAVLRNDAELLSNVIASQIASHQRFGG
                     VVPEVASRHHVEVITACIEEALLEAEVTAEDLTAVAVTYGPGLVGALLVGISAAKAFA
                     WANGLPLIPVNHMAGHLMAARAVKELEFPLLALLVSGGHTELVYVSEAGDYKIVGETR
                     DDAVGEAYDKVGRVMGLPYPAGRVIDELAHEGQDIYDFPRAMIKEDNLEFSFSGLKSA
                     FINLYHNAQQKGETLSNADLSASFQACVMDILMAKTKKALEQYPVKTLVVAGGVAANQ
                     GLRERLAAEITDVEVIIPPLRLCGDNAGMIALAAVSEYNKENLAGWDLNAKPSLAFEN
                     L"
     gene            complement(7112..7948)
                     /locus_tag="U1396_001472"
     CDS             complement(7112..7948)
                     /locus_tag="U1396_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5342658.1"
                     /translation="MKIQPEFYVFNNRSYVDFYPIQFGMEACKPLHSFGPTMKQHYLF
                     HYIISGSGTFYDTSDQREYHLTAGQGFLISPDAICSYEADEKDPWTYIWLEFDGLKTE
                     HFLRQAGLSKEQPIFSQREMPTSSPVYHEMKQILALHHQKSALVLGHLYLFISCLIDC
                     SLTKTSSKHDENKEFYIREAINFVERNYEKAISVDDLAQVCNLNRHYFSRLFKEQMNI
                     SPQQFIIQYRLSEACELLKNTTKTLQEIAEEIGYSNQFNFSTAFKRHYQISPNRWRKI
                     HK"
BASE COUNT         2092 a         1510 c         2052 g         2340 t
ORIGIN      
        1 aggtctagct gtatttttag tcattttatt gtttcatctt ttaaaatggg atggtattca
       61 gattgcggct ctctcagcag ttttcagtct tcgtgaagat tttgggaaaa gtgtgcattt
      121 tggctcttcc cgtgtactta gtaattccat aggtggcttt tatgccttgc tttattttat
      181 tctaagtgat ctattttctc ataatttttg ggtgacctta attttcatcc ctatttttac
      241 gatgctaact attatgacga atgtttcgtt taataatgct ccaggtgtta ttagcggggt
      301 tgctacaatg ttgatcattg ctctctcagt tcctgcagga gattctattt tctacgccct
      361 ccaaagagtt tttgaaacat tcgttggagt ttttgtatct gttattgtaa attacgatat
      421 cgataaaata aaaaagcgct ttctttccta acagtgtcat aaaatgtgac acagagggct
      481 tgactgttcg ttttttctgc cctataatag tgtgcagaaa ggagttcatt atgagagaaa
      541 aagagtttcg acgttcctta gctatttttc caattggtag tgtaatgaaa ttgactgatt
      601 taacagcgcg tcagattcgt tactatgaag atcacggttt gataaaacca gttcggaacg
      661 aaggtaatcg ccgcttgtat tctctaaatg atatggactt actacttgaa attaaagatt
      721 ttttggatga gggcctaaac attgcagcga ttaaaaaaga atacgccaat cgtaaagcaa
      781 aggaaaaggt tcaagcagaa cagaaaactt taactgatga ggatgtgcgt cgtatcctac
      841 atgatgaatt tagcagacaa gggcgatttt caagtccaag ctcgatcttt cggtcgtcgt
      901 aataggttta attaagagga gaaaaaatat ggttgtcaca acagcggata ttaaacgtga
      961 tattaaagag aaaaatgtta catttctacg tctcatgttc actgatatta tgggagtgat
     1021 gaaaaacgta gagattcctg cgacagaaga gcaggttgaa aaagttttat caaataaagt
     1081 tatgtttgat ggttcgtcta ttgaaggttt tgtacgtatt aatgaatctg atatgtacct
     1141 ttatccagat ttaaacacat ggactatttt tccttgggga gatgaaaatg gccgtgtggc
     1201 aggcttgatt tgtgatattt atacgactga aggtgaaccg tttgcgggag atcctcgtgg
     1261 aaacttgaaa aaatctcttc gtcggatgga aaaagaagga ttctcatcct ttaaccttgg
     1321 tccagaacca gaattcttct tgttcaaaat ggatgagcag gggaatccaa ctcttgaagt
     1381 gaatgacaag ggtggttact ttgacttggc gcctacagat cttgcggaca atactcgtcg
     1441 tgaaattgta aatgttttga ctgaaatggg atttgaagtt gaagcgagcc accacgaagt
     1501 agcggttggt cagcatgaaa tcgactttaa atatgcggat gttttgaagg cgtgtgataa
     1561 tatccaaatc tttaagttgg ttgttaagac gattgcacga aaacatggct tgtacgctac
     1621 atttatggct aaacctaaat ttggaattgc tggttcaggt atgcactgta acatgtcact
     1681 ctttgataaa gacggtaata atgccttctt tgatccagaa gatcctcgtg gcatgcaatt
     1741 gtcagagaca gcttatcact tcctcggtgg tttgattaaa catgcttata actacactgc
     1801 aattaccaac cctacagtaa actcatacaa acgtttggta cctggttttg aagctcctgt
     1861 ttatattgct tgggcaggca aaaaccgttc tccattggtt cgtgtacctg catcacgtgg
     1921 aatgggaact cgcttagaat tgcgttctgt agatccaacg gctaacccat atttggctat
     1981 ggcagttctt ttggaagttg gattagatgg tatcgaacac aagattgagg ctcctgctcc
     2041 agtagaatca aatatttatg caatgtcaga tgaagaacgt cgcgaagctg gtattacaga
     2101 tcttccatca actcttcaca atgcgcttaa agccttgaga aaagatgatg ttgttcgttc
     2161 ggcattgggt gatcatatct atactaactt cttggaagct aagaaaatcg aatgggcaag
     2221 ctatgcaacc tacgtttctc aatgggaaat tgacaactat ttggatatgt attaaacaaa
     2281 ggaccccgac gggtcctttg ttcatgagct tgaaaatcag agagcgagta atggcgcttg
     2341 gaccattttt tcatgagctt gaaaaccaga tagcgaattg ggaccccgac gggtcctttg
     2401 ttcacgagcc gagaaattgg aaagcgtgta atggtccagt ggagtgaaat agcctgggaa
     2461 gagactgttt cagtctgagc taataaatag cagggcgagg ggatggacat gagcttgaaa
     2521 tctgtctttt tacaagctgg gttatcttgt taatataaaa taaatcccag aggtctcacc
     2581 tctgggattt tagtgtgtta tcggtcaggc gtcagaatca ttgggataat gattggttca
     2641 cgctctgttt tttcgtatag gaatggtcgt agggcgttaa caatggcgcc gttgactgtt
     2701 tggatattgg catctttatt gcgcatggcg atgcggatag cgttgaaaag gacgcgttgg
     2761 ctttcgcgaa tgagctcgcc agattctctc atatagatga agccacggct gaggatgtct
     2821 ggtcctgcta atatcatctt agaattaaaa tcgacagtgg ctactgcaag gacaacacca
     2881 tcttctgaaa gatcgcgacg gtcttttaga acagctgcgc cgatttcacc gatgcggttt
     2941 ccatcaacat agatgtcttg ggcgttgaat tgacctgcga gacgtgcaga atcttttgtc
     3001 agagcaagga catctccgtt ttccatgatg aagatattat cttttggaac gcctgtatca
     3061 acagctaggc tggcatgaat tttttgcatg cggtattcac catggacggg catgaagtat
     3121 tttggcttga ttaggcggag catgagtttt tgctcttgtt gaccaccgtg tccagaggta
     3181 tggatgttgt tgatcttgcc gtgaataaca tcgacaccgg cttcaattaa gatattgatg
     3241 agcttgttga cacctgtggt atttcccgga ataggactgg acgagaagat aaccgtgtcg
     3301 cctggctgga gttgcacctg acggtgggta ccgtgggcga tgcgagagag tgctgccata
     3361 ggctcccctt ggctccctgt acagagaatc atgatctcgc tggcaggata ctctttgatc
     3421 tcgtttggct cgataaaggt gtcttttgga accttgatgt agccgagctc gataccgtta
     3481 acaatggctt tttccatgga acgtccaaag acagcgatct tgcgtccggt cttaaccgct
     3541 gcatcagccg cctgttggag acggaagatg ttggaggcaa aggaagcaaa aatgatgcgt
     3601 ccgtgaatgc cttcaatcag cttcataatg gactgaccga ccactttttc cgagttggta
     3661 aaggttggga cctcagcatt tgtcgagtcg gagaggaggc agagaacgcc ttcttcaccg
     3721 agggcagcca tgcggtgaag gtctgctggc tcgccaactg gagtgaagtc gaacttgaag
     3781 tcaccggtgc agacgatttt tccttgcggg gtgtcaacga cgataccaag tggttctgga
     3841 atggagtggg tggtgcggaa gaagctgacc ttgaggtgtt tgaaggtcaa ctcagtatta
     3901 tgattgattt catgcaaagt cgcatcacgg agcagtccgt gttcttccaa tttgcctcga
     3961 ataagggcaa gggctaaagg tccagcatag attgggacat tggcctgctt gagtaagaag
     4021 ggaatgcctc cgatgtggtc ttcgtgcccg tgggtaataa ccagaccttt aacacggtct
     4081 aggttttcaa cgatgtagga gtagtctggg ataacgtagt cgatacccaa taggtcatct
     4141 tctgggaact tgataccggc atcgacgatg agaatttcat ccttatactc gataccgtag
     4201 gtatttttcc cgatttctcc caaaccaccg atggcgaaaa cgccaacttc atgaggtttt
     4261 agattgactg atgacatgga ttaaaactcc gtaattttga aatctgcgtg ctctttctcg
     4321 tattcaagat gattgtctga taagaggtcg ataaattcga tgttgtattc agggcggttg
     4381 gtttccacca attcacgcgc gataatacga ccttccaatt ctgatgcagc atcgatgtct
     4441 agataaagag cacgtgtttg ctcgcgacgt gggctaattt ttgattcttg atagaatact
     4501 ttataaatca tgtgtagtat agttcctttc tttttgactg gcaactatga aaaaagcctc
     4561 aaacagttgg gtctgtctgg taatatctat tcaattttct cgagttgtca atttattcag
     4621 tctaaatgta ctcttcatta tatcataaaa tatgctgatg gtaaaagggt ttggtaggaa
     4681 aatggaaaag tgtcatgatt ttcagaaatt cggtatttca gaaggggata aatcaaagaa
     4741 atgagttagg attccgagtg tgttgggatt actaagacta agttcaattg tgctgagaaa
     4801 tgcctgtcaa ctgccagata gtgatgtgac ttactagaat gacaaatcgg ttcgatccat
     4861 taacctacta gaaatcacaa ccgattcttt tcattatttg aaaaaaaggt caagatagct
     4921 tacaatagag ggtagcattg tacagaaaga gaaatttatg aaaatactag ctttagatag
     4981 ctccaatcag gctttatcag ttgccttggt ggaggacggt cgtttgcagg cggaaaccct
     5041 gctggccgtt aagaaaaatc atagtatcag cctcatgcct gtggtcgatt ttttggtagc
     5101 acaggtggga tggacgccca aagacttgga taggatcgtg gtggctgagg gacctggttc
     5161 ctacacgggt cttcgtgtgg cggtggcgac cgccaagacc ttggcctaca ccctcaagat
     5221 tgacttggtg gggctatcca gtcttcagtc tctggttcct cccagcctga cgggtctggt
     5281 ggtgcctctc attgatgccc gccgtaactg cgtctatgca ggtctttatg aaaatggcag
     5341 agcagttgag gcagacaagt actggtcttt tgaagactta ctttctagcc tgtctgggaa
     5401 ggaagacatc acctttgtcg gagaagtagc aaactttatc gagcaaatcg agcaagctct
     5461 gccgactgct cagtatcaag ccagtctacc gtctgcctat caattggcag taatcggtca
     5521 agacttgcca gcagtagatg tgacgagctt tgagcccaac tatctcaagc gggtagaggc
     5581 agaggaaaac tggctcaagg acaaccaagc tggctcagaa agttatatca agcgtgtatg
     5641 atagagatta agtactacga cggtcaggaa aatctatcgg aagctgtgtt ggcagtcatg
     5701 gagtcggtct atgagcaatc gccttggacc ttggaacaga ttgtgactag cctagccagt
     5761 caggatgagg attattatct ggcctatgag ggtcaggaat tagttggatt tttggctgtt
     5821 cagacggtgc tggatgagat ggaaatcttg cagattgctg tcaaggctga ttttcagagg
     5881 ttgggaatcg ccagtcaact gatggctgct gtgatggact gggaggggga catcttcctc
     5941 gaagtgaggg agtccaatag tgcagctcag gccctctata cacgccagca ttttaccaaa
     6001 ataggaaaac gaaaagacta ctaccgccat cctgtcgagg acgcggtgct aatgaagaga
     6061 gaacgtgatg aaagatagat tgattttggc gatcgagacc tcctgtgacg agacctcggt
     6121 ggctgttttg cgaaatgatg cggagctttt gtccaatgtc attgctagcc agattgccag
     6181 ccaccagcgg tttggcgggg tggtgcctga agtggccagc cgtcaccatg tggaagtgat
     6241 tacggcttgt atcgaggagg ccttgttgga ggcagaggtg acggcagagg acctgacggc
     6301 tgtggctgtg acctatgggc ctggcttggt cggtgccttg ctagttggga tttcggctgc
     6361 caaggcattt gcttgggcta acggtctgcc actcattcct gtcaatcata tggcagggca
     6421 tttgatggcg gcgcgtgcgg tcaaggagtt ggagtttccg ctcttggccc tcttggtcag
     6481 cggtggacac acagaattgg tctatgtgtc agaggcgggc gactataaga ttgtcggtga
     6541 aacgcgagat gatgcggtcg gcgaagccta tgataaggtg gggcgggtca tgggcctgcc
     6601 ctatccagct ggtcgggtga ttgacgaatt ggcacatgag gggcaagaca tttatgactt
     6661 ccctcgggct atgattaaag aggataatct ggagttttct ttctctggtt tgaaatccgc
     6721 ctttatcaac ctctaccaca atgcccagca gaaaggggag accttgtcca atgcggactt
     6781 gtcagcctct ttccaagcct gtgttatgga cattctcatg gctaagacca agaaggcctt
     6841 ggagcaatac cctgtcaaaa ccttggtggt agcgggcggt gtggcagcta atcagggctt
     6901 gcgagagcgg ttggctgctg aaattaccga tgtggaggtt atcattcccc cgcttcgcct
     6961 ctgcggtgac aatgcaggta tgattgcctt agcagcggtc agtgagtaca ataaggaaaa
     7021 ccttgctggc tgggacctca atgccaagcc tagtctggct tttgagaatt tatagaataa
     7081 aaacctctta cgtcaaggat acgtaagagg tttatttgtg gatttttcgc cagcgatttg
     7141 gagaaatttg gtaatgtctt ttaaaagcag ttgaaaaatt gaattggttg gagtagccga
     7201 tttcttcagc aatttcctgt agtgtcttag tggtgttttt taagagttcg caggcttcgc
     7261 tgagtcggta ttggatgata aattgttgag gtgagatgtt catttgctcc ttgaatagcc
     7321 gactgaagta gtggcgattg aggttgcata cttgtgccaa atcatcgacg gatatagctt
     7381 tctcatagtt tcgttctacg aagttgatag cttctcgtat ataaaattcc ttgttttcat
     7441 cgtgtttgct acttgttttg gttagcgaac agtcaatgag gcaggagata aagaggtaaa
     7501 ggtgtccgag aactagagcg cttttttgat gatggagcgc gagaatttgt ttcatttcat
     7561 ggtagacagg gctagaggtg ggcatttctc gttgtgaaaa gataggttgt tctttcgaga
     7621 gccctgcctg tctgagaaaa tgctcagttt tcagaccgtc aaattcaagc cagatatagg
     7681 tccaggggtc cttttcgtct gcttcgtagc tacagatggc gtctggggag ataaggaagc
     7741 cctgtcctgc ggttaggtgg tattcacgtt ggtcggaagt atcgtaaaaa gtacctgaac
     7801 cagagatgat gtagtgaaac aggtagtgtt gtttcatagt tgggccgaat gagtgaagtg
     7861 gcttacaggc ttccatgcca aattgaatgg ggtaaaaatc tacataggat ctgttattaa
     7921 agacgtaaaa ttcaggttgt attttcatcg tattctccat accaaaagtg taaaggctta
     7981 caaatagtat agca
//
LOCUS       DASGBY010000090         7894 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.090, whole genome shotgun sequence.
ACCESSION   DASGBY010000090 DASGBY010000000
VERSION     DASGBY010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7894
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.090"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..432)
                     /locus_tag="U1396_001473"
     CDS             complement(<1..432)
                     /locus_tag="U1396_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342659.1"
                     /translation="MNVAIIILVAIFVILLLLLLIYVALFQIWLKSSRQIHEYDEDII
                     RDYLCKLAESFEYSSTQIPYGRARWFILGSKDFVCTVNDVENLEIFGYSPIRSKIDEE
                     FLEYGLLLTQDGFYFREQIENSNNDADVKYKISKKFFPLKGL"
     gene            complement(445..1191)
                     /locus_tag="U1396_001474"
     CDS             complement(445..1191)
                     /locus_tag="U1396_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5342660.1"
                     /translation="MATYETFAAVYDEIMDDSLYDKWTDFSLRNLPQDTKTILELACG
                     TGIQAVRFAQKGFEVTGLDLSYEMLELAQKKAEAAGVMMELAQADMMALEGVGDFDAV
                     TCYSDSLCYMSDREAVLRVFEGVHSVLNQGGTFLFDVHSIYQMEKVFAGYSYHENYED
                     FAFVWDTYEGEHEHSIVHELTFFVKDEDSQEERFIRRDEVHEERTYPIETYVELLKEA
                     GFASVEVFADFEDQAPTETSQRWFFRCKKK"
     gene            complement(1648..2007)
                     /gene="rsfS"
                     /locus_tag="U1396_001475"
     CDS             complement(1648..2007)
                     /gene="rsfS"
                     /locus_tag="U1396_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEM5342661.1"
                     /translation="MKELDLVKVVVQAADDKRAEDLVVIDVQGVTSLTDYFVIASSMN
                     SRQLEAIAENIREKVAEVGIKSSRVEGDSNGGWVLLDLGGLVVHIFSEEMRDLYNLEK
                     LWHEGSFLEVADFLEEE"
     gene            complement(2009..2518)
                     /locus_tag="U1396_001476"
     CDS             complement(2009..2518)
                     /locus_tag="U1396_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM5342662.1"
                     /translation="MKTALIVIDIQSMPVEEQPYAIEERLALWQDSLAQARQAGLEVI
                     HVRHHDQELVKGTADWEIHSIVAPLASEKIFDKTFNSAFKETRLHAYLQEKEIERLII
                     MGMATNFCIDTTIKVAFELGYKVAVIQDGTTTGYSGKLDAEDLIDHYQNIWSWNFAQV
                     DKLENIIRG"
     gene            complement(2528..2970)
                     /locus_tag="U1396_001477"
                     /pseudo
     CDS             complement(2528..2970)
                     /locus_tag="U1396_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735474.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(2973..3560)
                     /gene="yqeK"
                     /locus_tag="U1396_001478"
     CDS             complement(2973..3560)
                     /gene="yqeK"
                     /locus_tag="U1396_001478"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HEM5342663.1"
                     /translation="MIAADLTFDRQALLEKIRVAMKPARFQHVLGVEEAALALADRYG
                     CDPKKASLAALLHDYAKEVEDQVFLDLIAKYDLDKALLNWDNNIWHGVVGAYKIAEDF
                     GLEDQEIFQAIQRHTIGAGQMTLLDKVLYVADYIEPNRDFPGVDEARRIAKESLDKAV
                     AYETAQTISYLAKKGIPIYPQTLETYNGYVVWLKE"
     gene            complement(3557..4189)
                     /locus_tag="U1396_001479"
     CDS             complement(3557..4189)
                     /locus_tag="U1396_001479"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEM5342664.1"
                     /translation="MAIELLTPFTKVELEVEKKETNRKQVGILGGNFNPVHNAHLIVA
                     DQVRQQLKLDEVLLMPEFIPPHVDKKETIDEYHRYSMLKMAIAGIEGLGIETIELERR
                     GVSYTYDTMKLLKEKNPNTDYYFIIGADMVDYLPKWHRIDELVQLVQFVGVQRPRYKA
                     GTSYPVIWVDVPLMDISSSMVRSFIKQGRVPNFMVPHEVLDYIEEKGLYQ"
     gene            complement(4202..4513)
                     /gene="yhbY"
                     /locus_tag="U1396_001480"
     CDS             complement(4202..4513)
                     /gene="yhbY"
                     /locus_tag="U1396_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEM5342665.1"
                     /translation="MMLTSKQRAFLNSQAHSLKPIIQIGKNGLNDQIKTSVRQALDAR
                     ELIKVTLLQNTDENIHEVAEILEEEIGVDTVQKIGRILILFKQSSKKENRKISKQVKE
                     I"
     gene            complement(4832..5938)
                     /gene="yqeH"
                     /locus_tag="U1396_001481"
     CDS             complement(4832..5938)
                     /gene="yqeH"
                     /locus_tag="U1396_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000391231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HEM5342666.1"
                     /translation="MEELFCIGCGAQIQTLDKAVAGFTPQSALEKGLETGQLYCQRCF
                     RLRHYNEISDVNISDDDFLKLLHSVGESDALVVNVIDIFDFNGSVIPGLPRFISGNDV
                     LLVGNKQDILPKSVKTGKVTQWLTERAHEIGMRPVDVVLTSAQNKQAIKDLIEKIEQH
                     RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSYIY
                     DTPGIIHRHQMAHYLTAKNLKYISPRKEIKPKTYQLNPEQTLFLAGLGRFDFVAGERQ
                     GFTAFFDNELQLHRTKLQGASEFYQKHAGSLLVPPTSKELKEFPELVRHEFTINEKTD
                     VVFSGLGWIRVNEKAKIAAWAPKGVDVVIRKAII"
     gene            complement(5939..6466)
                     /locus_tag="U1396_001482"
     CDS             complement(5939..6466)
                     /locus_tag="U1396_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HEM5342667.1"
                     /translation="MSLENYMPDFALEKAYDVTVESLKKHGIKVVFVDLDNTLIAWNN
                     PDGTPEMRQWLHDLQDAGIPVVVVSNNKYERVKRAVEKFGIEFEAFALKPFTFGINRA
                     LKRFDVQPYEVIMIGDQLMTDIRAAKRAGLKSVLVKPLIKTDSINTQINRWRERRTMK
                     KIIAKYGAIDYKREM"
     gene            complement(6650..7024)
                     /locus_tag="U1396_001483"
     CDS             complement(6650..7024)
                     /locus_tag="U1396_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342668.1"
                     /translation="MNPLRKELRTVAVEVSDLALDYAVRLAQSLNSTLRYHNYDSLIA
                     IAKTKGVEPKGKDCQSFSEYRQRYSLYDAKKLIYRALAWRLFDDSHADYGHALTILGL
                     DEDESGVEQIGFAFSKFTLDID"
     gene            complement(7231..7860)
                     /locus_tag="U1396_001484"
     CDS             complement(7231..7860)
                     /locus_tag="U1396_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM5342669.1"
                     /translation="MIKEFCSENHVAVVKALSLGAQRVELCDNLAVGGTTPSYGVIKH
                     VCQLAHENEATVMTMIRPRGGDFCYDEAEVEMMVEDCKAAIELGADGLVYGLLTEENW
                     LDEPALERLFAVSQDCQIVFHMAFDQIPRERQFEALDWLVEHGVTRILTRGSLTGSAL
                     NNVEWLQEIVAYAQGKIEILIGGGLTVDNVPTLLEALPINQVHGTRLFW"
BASE COUNT         2244 a         1960 c         1430 g         2260 t
ORIGIN      
        1 taaacctttt aaagggaaaa actttttgct aattttatac ttaacatcag catcattatt
       61 gctattttcg atttgttctc taaaataaaa tccatcctgg gttaacaaca aaccatattc
      121 caaaaactcc tcgtcaattt tgctcctaat aggactatag ccaaaaatct ccaaattctc
      181 tacgtcatta actgtacaaa caaaatcttt gctccccaat ataaaccatc tggcccgacc
      241 gtagggaatc tgcgtactag aatattcaaa agactcggct aatttgcata aataatcacg
      301 aataatatct tcatcgtatt catgtatttg acgactcgat tttaaccata tttgaaacaa
      361 agctacataa attaataata acaataaaag aataacaaat attgcaacca agataatgat
      421 agctacattc atatccaata ccacctattt cttcttacac ctgaaaaacc accgctggct
      481 tgtttctgtc ggagcttgat cttcaaagtc cgcaaagact tccactgacg caaaaccagc
      541 ttctttcaat aattccacat aggtttcaat cggatatgtc cgctcttcgt gaacttcatc
      601 ccgacggata aaccgctcct cttgactgtc ctcatctttg acaaagaagg tcaattcatg
      661 cacaatggaa tgctcatgct caccttcgta ggtgtcccaa acaaaggcaa aatcctcgta
      721 attttcatgg tagctatagc ctgcaaatac tttctccatt tgatagatgg agtgaacgtc
      781 aaaaaggaaa gtgccacctt gattgagaac cgagtgaacg ccttcaaaga cccgcaaaac
      841 ggcttctcgg tccgacatat agcacagact gtccgagtaa caggtcaccg catcgaaatc
      901 tcccacacct tccagagcca tcatatctgc ttgggccaac tccatcatga caccagcagc
      961 ttctgctttt ttctgggcca attccaacat ttcataagac aggtcaagac ctgtcacttc
     1021 aaagcccttt tgagcaaaac gtacagcctg aatccctgtc ccacaggcca attctaaaat
     1081 tgtcttggtg tcttgtggca agttccgtaa gctaaaatct gtccatttat catacaagct
     1141 gtcatccatg atttcatcat agaccgccgc aaaggtttcg taagttgcca tatttcccat
     1201 tttccctttc ataaaaagca gccaatcgac tgcttcatta actcacactg tgttcaagaa
     1261 gttcatcact tctaattaca taatagtgaa ctctctttgg tcactttcga attttatggt
     1321 gaccagctga aacagttccc caaactgttt cactcccacc cccgcacagc tccaacagtc
     1381 agagtagtga ctgttggagg ttggaaatga agcgaactcg ttcgcatcag ccgtataggt
     1441 cagatttgga gtgggaagca cgaacaaagc tgccaatcaa ccactgcgct gagatgttga
     1501 ctcaagtttc gaatagtgca cccaaatcaa aatctatctt catatttttc aagaagttca
     1561 tcacttctaa tcacataata gtgaactctc tttggtcact ttcgagtttt atggtgacca
     1621 gctgaaacaa ttccccaaac tgtttcacta ttcctcttct aaaaagtctg cgacttccag
     1681 gaagctgcct tcatgccata atttttcaag gttgtagagg tcacgcattt cttctgagaa
     1741 gatatgaacg actaggcctc caaggtccaa aaggacccaa ccaccgttac tatcgccttc
     1801 tacacggcta ctcttgattc caacttccgc taccttttca cggatgtttt ccgcaatagc
     1861 ctccaactgg cgactgttca tggaactggc aatcacaaag tagtctgtca ggctggtcac
     1921 gccttgaaca tcaattacaa caaggtcctc agctcgcttg tcatcagcag cctgaaccac
     1981 aacttttact aaatctagtt ctttcatctt atcctctaat tatattttct aatttatcca
     2041 cctgggcaaa attccatgac cagatgtttt ggtagtggtc aatcaagtct tcggcatcca
     2101 atttgcctga ataacctgtc gtcgttccgt cctggatcac agctaccttg tagcctagtt
     2161 caaaggctac tttaatcgtc gtatcaatgc aaaaattggt cgccatgccc atgatgatga
     2221 gtcgctcaat ttccttttcc tgcaaataag catgaagcct cgtttccttg aaggcactgt
     2281 taaaggtctt atcgaaaatc ttctcactag ctaagggtgc aacaattgag tgaatctccc
     2341 agtcagcagt ccccttgacc aattcctgat catgatgtcg gacatggatg acttctagcc
     2401 ccgcttgacg ggcttgagca agactatctt gccaaagagc cagtcgttct tcaattgcat
     2461 agggttgctc ctccacaggc atactctgaa tgtcaatgac tatcaaggct gttttcatat
     2521 ccactcccta aggcgtttcc aaacggaaga ccaattccct ttcttcttca ctatccaaga
     2581 caaaatcatt tttctccaag agatgagcca tcttctgatt gcccttaaca taagctgcaa
     2641 tcaaatggtc gcagacagga tgtgattgag ccattgctat tacaacctcc aaagcagctt
     2701 gaccatagcc ccttccttga aactcttggc aatcataaac cgccagagca tatactgctg
     2761 gatgtcctca tcaatgtcaa tcaaggcaaa accgaccacc tgttgacccg cccaaacagc
     2821 gtaagggaag acatccccgt tttctctgta aagccaagcg tcagcgagtg aacgcacatt
     2881 tggagccacg aagcccttgt cctcctcggc tactgtcaag tccaagactg cttgatagga
     2941 gctttcatcc acaggtttta atgcaatcat ccctactcct tcaaccaaac aacatagcca
     3001 ttataggttt ccaaggtttg tggataaatg ggaattccct tcttggctaa gtaagaaatg
     3061 gtttgggcag tttcataggc tactgccttg tccaaggact cttttgcgat acgacgcgcc
     3121 tcgtccaccc caggaaaatc ccgattgggt tcgatatagt ccgccacata gagaaccttg
     3181 tccagcaagg tcatctgccc agcaccaatg gtgtgtcgtt gaatggcttg gaagatttct
     3241 tggtcttcca aaccaaaatc ttctgcgatt ttataggccc caaccacacc gtgccagatg
     3301 ttattatccc agttgagcag ggccttgtcc aaatcatact tggcaatcaa gtccaaaaaa
     3361 acttggtctt ccacttcctt ggcatagtca tgcaagagtg ctgccagact ggcttttttc
     3421 ggatcacagc cgtatcgatc tgccaaggca agcgccgcct cttccacacc caagacatgt
     3481 tggaagcgcg ctggcttcat ggctacacgg attttttcca aaagagcttg acggtcaaag
     3541 gtcaaatctg ctgcaatcat tggtaaagtc ctttttcttc gatatagtcc agaacttcat
     3601 gaggcaccat aaaattcggc acccgtcctt gcttgataaa gctccgtacc atgctggagg
     3661 aaatgtccat caagggcaca tctacccaga taaccggata ggacgtccct gccttgtaac
     3721 gaggacgctg gacaccaaca aactgcacca actggaccaa ttcatcaatc ctgtgccatt
     3781 ttggaaggta gtctaccata tctgcaccga tgatgaaata ataatccgta ttaggatttt
     3841 tttccttcag caatttcatt gtgtcgtagg tatagctgac accacggcgt tctagttcaa
     3901 tggtttcaat ccccaagccc tcaatacctg caatagccat cttgagcatg gaatagcgat
     3961 ggtattcgtc aatggtttct tttttatcca catgaggcgg aatgaattct ggcatgagca
     4021 agacttcatc cagcttcaac tgttgacgga cctggtctgc cacaatcaaa tgagcattat
     4081 ggacagggtt gaaattccct cccagaatcc ccacttgttt gcgattggtt tctttctttt
     4141 caacctctaa ttcaaccttg gtaaagggtg ttaagagttc aatagccata ggctctcctt
     4201 cttagatttc tttgacctgt ttagaaattt tacggttctc tttcttgcta gattgtttga
     4261 ataaaatcaa gatgcgaccg attttttgga ccgtatccac accgatttct tcttccaaga
     4321 tttctgctac ttcgtgaatg ttttcatccg tattttgtag caaggtcacc ttaatcaatt
     4381 cacgcgcatc caacgcctga cgaacactgg ttttaatctg gtcatttaga ccatttttcc
     4441 caatctgaat aatgggtttg agactatgtg cctgactgtt caaaaaggca cgttgttttg
     4501 aagttagcat aatttattat acaaagggcg ttgtaacaga ctgggagact gttacaatcg
     4561 ggaaataaag aaaacaaagt ttttccttat tgcgccgata tacttagccc gtgttcaaat
     4621 cagaagactt gaacttcctt tctctttaat tgtaaaaact gaaatcaaat acctcttata
     4681 ctcaatgaaa attaaaatca gactaggcga cgcagatgca gatagaaccc tactactttc
     4741 acgctttcag gtagcaggct gtaaagctcc actggagctt tacactcatc aaatcaagtc
     4801 aacaacgtct gcttttaatt ttcgaagagt attagataat cgccttgcga atgaccacat
     4861 ccacaccctt aggagcccag gcagcaatct tggctttttc attgacacga atccaaccaa
     4921 gtcctgagaa gaccacatcc gtcttctcgt tgatggtaaa ttcatgacgg accagttcag
     4981 gaaattcttt caattccttg ctggttggtg gcactaaaag tgagcccgca tgtttctgat
     5041 aaaactcgct agctccctgc aacttggtgc ggtggagttg gagctcatta tcaaagaagg
     5101 ccgtaaagcc ttggcgttca ccagccacaa agtcaaatcg tcccagacca gccaagaaca
     5161 aggtttgttc tggattgagc tggtaggtct ttggcttgat ttccttgcga gggctgatgt
     5221 acttgaggtt tttagccgtc aaataatggg ccatctggtg acggtggata attcctggcg
     5281 tgtcatagat gtatgaacca tcatccagag ggatttcaat cttatccagc gtcgttccag
     5341 ggaaacgtga agtcgtaatg acatccttgt cccctgtgat ttcttgaata atagcgttaa
     5401 tcaaggttga cttgccgaca ttggtcacgc cgaccacata gacatcccgt cccttgcggt
     5461 gttgttcaat cttttcaatc aaatccttga tagcctgctt attttgggct gaagtcaaga
     5521 ccacatcaac cggtcgcatg ccgatttcat gtgcccgctc ggtcaaccac tgagtaacct
     5581 tgcctgtctt gacagacttg ggtaaaatgt cctgcttgtt gccgaccaaa agcacgtcat
     5641 ttccagaaat aaagcgaggt aaacctggaa tgactgaccc attgaaatca aaaatatcaa
     5701 tgacattaac caccaaggca tcgctttctc ctacgctatg gaggagtttc aagaaatcat
     5761 cgtctgagat attgacatct gaaatctcat tgtaatggcg caaacggaaa caacgttggc
     5821 agtagagttg ccctgtttcc aggccttttt ctagggctga ttgaggtgta aaaccagcga
     5881 cagccttgtc tagcgtctga atctgggcac cacagccgat acaaaataat tcttccactt
     5941 acatctccct cttgtagtct atcgctccat atttagcgat gatttttttc atagtccgtc
     6001 gctcacgcca acggttaatc tgcgtattga tagagtccgt ctttatcaag ggtttgacca
     6061 agacagactt gagaccagct cgcttagcag cccgaatatc cgtcatcagc tgatcgccaa
     6121 tcataattac ctcatacggc tggacatcaa agcgtttcaa agcacggtta atcccaaagg
     6181 tgaaaggctt gagagcgaag gcttcaaatt caatcccaaa tttttcaacc gcccgtttga
     6241 cacgttcgta tttattgtta gacaccacca caacaggaat acctgcgtcc tgcaaatcat
     6301 gtaaccactg gcgcatctct ggcgtaccat cgggattatt ccaagcaatc aaggtattat
     6361 ccaagtcaac aaacactact tttatgccat gttttttcaa gctttcgacg gtcacatcat
     6421 aagccttttc caaggcaaaa tccggcatgt aattttctaa actcactgtc gtctccaaag
     6481 ttttttatca gataattata ccatttttct aagaaaaatg cgaatcgata gcagaaaaca
     6541 ctcggatcaa ccgagtgttt tctagaggta atgtaatggt agttgtgaat taaatctgac
     6601 cttcttccaa aatccaatct ttcggaatga aaatcatatg ggttagcaat caatcaatat
     6661 caagagtaaa ttttgaaaaa gcaaaaccga tttgctctac tcctgactca tcctcatcca
     6721 accccaaaat ggtaagagca tgtccataat ctgcatgact atcatcgaat agacgccacg
     6781 cgagagcgcg ataaattaac ttcttagcat catagagact gtaacgctgt ctgtactctg
     6841 aaaatgattg acaatcctta cctttcggtt ctactccttt ggttttagca atggcaatca
     6901 agctatcata attatgataa cgcaaagtac tattcaagga ttgggctaaa cgaacagcat
     6961 agtccaaagc taaatcactc acctcaacag ccacagttct caattcttta cgtaggggat
     7021 tcaatagaga cgcagcagtt tctagtctgt ataccggact ttaacaaaca aaaatgaaaa
     7081 cagccgaaca tgtcgactgc ttccgtggag attatatgaa aaagaataaa tatattgtat
     7141 cttccaatgc ttaaacaaac cttaacttct aaacatttct gaataaactt cgattattac
     7201 tctgtaattt atttcacttt caaagctacc ttaccaaaat aatctcgttc catgtacttg
     7261 attgattggt aatgcttcta ataacgttgg cacattgtcc acagtcaatc ctccaccaat
     7321 caaaatctca attttacctt gtgcataggc gacaatttcc tgtaaccatt ccacattgtt
     7381 caaggcagac cctgtcagac tcccacgcgt caaaatccgt gtcactccat gttctaccag
     7441 ccaatcaaga gcctcgaatt ggcgttcgcg aggaatttgg tcaaaagcca tgtgaaagac
     7501 aatctgacag tcctgcgaaa cagcaaacag tctttccaag gctggttcgt ccaaccaatt
     7561 ttcctcggtt aacaaaccat aaaccagacc atctgccccc agttcaatcg ctgctttaca
     7621 atcttcaacc atcatttcca cctctgcttc atcgtagcaa aaatctccac cgcgagggcg
     7681 aatcatggtc atgactgtgg cttcattctc atgagccagt tgacaaacat gtttgatcac
     7741 tccataactc ggcgtcgttc cgccaaccgc taaattatca cacagttcaa ctctttgagc
     7801 acccagagaa agagctttca ccacagctac atgattttcg gaacaaaatt ctttaatcat
     7861 ctttattcct ttcaagtctt ttttctttag tata
//
LOCUS       DASGBY010000091         7849 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.091, whole genome shotgun sequence.
ACCESSION   DASGBY010000091 DASGBY010000000
VERSION     DASGBY010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7849
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.091"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            192..617
                     /gene="lacA"
                     /locus_tag="U1396_001485"
     CDS             192..617
                     /gene="lacA"
                     /locus_tag="U1396_001485"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002982747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HEM5342670.1"
                     /translation="MAVIIGADKAGTELKETVKSYLIELGKEVVDVSKDGQDFVDVTL
                     AVAKEVTSNDSNLGIVVDAYGVGPFMTATKIKGMIAAEVSDERSAYMTRGHNNSRIIT
                     IGSEIVGPGVAKNIAKGFVEGEYDGGRHQIRVDMLNKMC"
     gene            651..1166
                     /gene="lacB"
                     /locus_tag="U1396_001486"
     CDS             651..1166
                     /gene="lacB"
                     /locus_tag="U1396_001486"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HEM5342671.1"
                     /translation="MKIAVGCDHIVTNDKIAVVDYLKTQGYEVIDCGTYDNIRTHYPI
                     FGKKVGEAVASGEADLGVCICGTGVGINNAVNKVPGIRSALVRDMTSAIYAKEELNAN
                     VIGFGGKITGGLLMTDIIEAFIHAEYKPTEENKKLIEKIQHVETLNQGQADPHFFDEF
                     LEKWDRGEYHD"
     gene            1178..2110
                     /gene="lacC"
                     /locus_tag="U1396_001487"
     CDS             1178..2110
                     /gene="lacC"
                     /locus_tag="U1396_001487"
                     /EC_number="2.7.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002262465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HEM5342672.1"
                     /translation="MILTITMNPSVDISYPLEQFKLDTVNRVAKTHKTPGGKGLNVTR
                     VLSQLGDDVIASGLLGGKIGEFIESELDKSSVKHSFYKIAGETRNCIAILHDGNQTEI
                     LEQGPTISEEEATGFLNYFEKLVPDLGIVAISGSLPKGLDTNFYSRMVGICNKYNIPV
                     VLDCSGEALLNVLDGQEKPTVIKPNTEELSQLVGTEVTDDIDSLKSVLHNSLFDGIEW
                     VIVSLGSKGAFARHHDVFYKVSIPKIEVVNPVGSGDSTVAGITSALVHNDSDENLLKK
                     ANVLGMLNAQEALTGHVNLNNYDNLFNQIEVKEV"
     gene            2113..3093
                     /gene="lacD"
                     /locus_tag="U1396_001488"
     CDS             2113..3093
                     /gene="lacD"
                     /locus_tag="U1396_001488"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5342673.1"
                     /translation="MVLTAQKRSLMEKVSDKNGVISALAFDQRGALKKMMAKHQTEEP
                     TVEQIETLKTIVSEELTKYASSILLDPEYGLPASKARADEAGLLLAYEKTGYDASTTS
                     RLPDCLDDWSVKRLKEQGADTLKFLLYYDVDGDEQVNRQKQAYIERIGSECKAEDIPF
                     FLEILSYDEGIADNTGVEFAKVKPRKVNEAMKVFSDERFGIDVLKVEVPVNMNFVEGF
                     GDGEVVYTKEEAAQHFRDQEASTHLPYIYLSAGVSAKLFQDTLVFAAESGAKFNGVLC
                     GRATWAGSVQVFIEQGEEAAREWLRTTGFQNIDELNKVLEKTASPWTEKV"
     gene            3121..3438
                     /locus_tag="U1396_001489"
     CDS             3121..3438
                     /locus_tag="U1396_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5342674.1"
                     /translation="MNREEITLLGFEIVAYAGDARSKFLEALKAAQEGDYAKAEELIA
                     AGGECLNDAHNAQTSLLQKEAAGEDLAFSVTLMHGQDHLMTTILLQDLMKHMIELYKR
                     GAK"
     gene            3438..5153
                     /locus_tag="U1396_001490"
     CDS             3438..5153
                     /locus_tag="U1396_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011889149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5342675.1"
                     /translation="MKGLIAQIEKGKPFFEKISRNIYLRAIRDGFIAGMPVILFSSIF
                     ILIAYVPNAWGFKWSADIETLLMTPYNYSMGILGLFVAGTTAKALTDSMNRSLPSTNQ
                     INFISTMLAAIVGFLLMAANPAKDGGFLTGFMGTKGLLTAFIAAFITVNVYKVCVKNN
                     VTIRMPDEVPPNISQVFKDLIPFTVSVVLLYAIELLVHNALGVNVAESIGKLLAPLFQ
                     AADGYVGITIIFGAFAFFWFVGIHGPSIVEPAIAAITYANAEANLQLLQAGEHADKIL
                     TSGTQMFIVTMGGTGATLVVPFMFMWLTKSKRNKAIGRASVVPTFFGVNEPILFGAPL
                     VLNPIFFIPFILTPIVNVWIFKFFIDSLGMNSFTANLPWTTPAPLGLVLGTNFQVLSF
                     ILAAVLIVVDVAIYYPFLKVYDQQILEEERTGKSSDELKEKVAANFNTAKADAILEKA
                     GATETVESTVESKEITEQTNVLVLCAGGGTSGLLANALTKAAKEYGAPVTAAAGSYGG
                     HREILPQYQLVILAPQVASNYEDLKVETDKLGIKLAKTEGAQYIKLTRDGQGALDFVK
                     QQMEN"
     gene            5219..6625
                     /gene="lacG"
                     /locus_tag="U1396_001491"
     CDS             5219..6625
                     /gene="lacG"
                     /locus_tag="U1396_001491"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HEM5342676.1"
                     /translation="MSKTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEDNYWY
                     TAEPASDFYNRYPVDLKLAEEYGVNGIRISIAWSRVFPTGYGEVNRKGVEYYHNLFAE
                     CHKRGVEPFVTLHHFDTPEALHSNGDFLNRDNIDHFVAYAAFCFEEFPEVNYWTTFNE
                     IGPIGDGQYLVGKFPPGIQYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHAL
                     PTKYPYDPANPDDVRAAELEDIIHNKFILDATYLGRYSEKTMEGVQHILAANGGELDL
                     REEDFSILEAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRR
                     EAPVNVPKTDWDWIIYPQGLYDQIMRVKADYPNYKKIYITENGLGYKDEFVDGTVYDD
                     GRIDYVKKHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERY
                     PKKSAHWYKKVAETQVID"
     gene            6650..6928
                     /locus_tag="U1396_001492"
     CDS             6650..6928
                     /locus_tag="U1396_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3884 family protein"
                     /protein_id="HEM5342677.1"
                     /translation="MFKTLKRVTGGVLTSAYEKVYIVNFEKCPYIPYIDQNVLKSLGK
                     WYVSTGGEWICHSDLEWDDFKTLFNNLLEGSLKGNVRYEMDYMPFQQS"
     gene            6951..7838
                     /locus_tag="U1396_001493"
     CDS             6951..7838
                     /locus_tag="U1396_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016480893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM5342678.1"
                     /translation="MKLKNDELTVEFKPEGATISSIRDRDGVEYLWQGNPEYWGGQAP
                     VLFPICGSLRNDGATFQVGEKTISGSMPRHGIVRKRTFDLVKHTENEIQFRILSDDEM
                     LKQYPFPFELQLTYRLDGKRLETEYAIRYLGELDAMPFFIGGHPGFNCPLLEDEAFDD
                     YYLEFELEEDCTIPESFPETGLLDFSKRQPMLSKTRILDLNYELFQHDALTFDNLKSR
                     KVALKTKNHQKGLKVSFEDFPFLVVWTTTNKGPFIALEPWSGLSTSLTETDNFIDKTH
                     VTYVEKGEVSRKAFTIEIC"
BASE COUNT         2521 a         1276 c         1668 g         2384 t
ORIGIN      
        1 ggaaaacaaa caaatcaaac acaattggtt taaaacacaa aaaaaaacac ataaaactgt
       61 tgacttttgt ttttaatggt ggtattataa tggtgtagaa ataatgaaag cgttatttca
      121 aacagttttg caaaaattta tcgtcgatgt agctacattc aattattttc taatgtaaca
      181 ggagaaagaa aatggcagta attattggtg ctgataaagc aggtacagaa cttaaagaga
      241 cagttaaatc atacttgatt gaacttggta aagaagttgt tgatgtgagt aaagatggtc
      301 aagacttcgt agatgtaact ttagcagttg ctaaagaagt gacttctaac gattcaaact
      361 taggaatcgt agttgatgcg tatggtgttg gacctttcat gacagcaact aaaatcaaag
      421 ggatgattgc tgcggaagtt tcagatgaac gctctgctta tatgacacgt ggtcacaata
      481 actcacgtat cattaccatt ggttctgaaa ttgtaggacc tggtgttgcc aaaaatatcg
      541 ctaaaggatt tgttgaaggt gaatatgatg gaggtcgcca ccaaattcgt gttgatatgt
      601 tgaataaaat gtgctaaaaa atcaaaagtt aaaattagag gagaaaacaa atgaaaattg
      661 cagtaggctg tgaccacatt gtaactaacg ataaaattgc ggtagtagac tatttgaaaa
      721 ctcaaggtta tgaagtgatt gactgtggta cttacgataa cattcgtacg cattacccaa
      781 tctttggtaa aaaagtaggt gaggcagtag cgagtggaga ggccgatctt ggtgtatgta
      841 tctgtgggac tggtgttgga attaacaatg ctgtcaataa agttcctggt attcgctctg
      901 ctcttgttcg tgatatgaca tcagctatct acgccaaaga agaattgaat gccaatgtaa
      961 ttggttttgg tggtaaaatt acaggtggct tattgatgac agatattatt gaagcattta
     1021 tccatgcaga atataaacca acagaagaaa ataaaaaatt gatcgaaaaa attcaacatg
     1081 ttgaaacact caatcaagga caagctgatc cacacttctt tgatgaattc ctagaaaaat
     1141 gggatcgtgg tgaatatcac gactaagggg taaggttatg attctgacaa taacaatgaa
     1201 tccgtcagtt gacatttctt atccgcttga acaattcaaa ttagataccg tgaatcgtgt
     1261 tgctaaaacg cataaaactc ctggtggaaa gggtttgaat gttactcgag ttctttccca
     1321 actgggagat gatgtgattg caagtggttt gttaggcggt aaaattggag aattcataga
     1381 gagtgaacta gataagtcaa gtgtgaaaca ctccttttat aagattgctg gagaaacgag
     1441 aaactgtatt gccattttgc atgatggaaa tcaaacagag attcttgaac aaggtcctac
     1501 gattagtgaa gaagaagcaa cagggttctt aaactatttt gaaaaactgg ttccagattt
     1561 agggattgta gctatctcag gtagtctccc aaaaggtctt gatacaaact tttattctcg
     1621 tatggtggga atttgtaata aatataatat cccagttgta ttagattgtt caggagaggc
     1681 ccttctaaat gtacttgatg gacaagaaaa acccacagtt attaaaccaa atactgagga
     1741 actttctcaa ctagtaggaa cggaagtgac tgatgatatt gatagtttga aatcagttct
     1801 tcacaattct cttttcgatg ggattgaatg ggtgattgtt tcacttggtt caaaaggagc
     1861 ctttgcaaga catcatgatg ttttctataa ggtatctatc cctaaaattg aagtggtcaa
     1921 tcctgttggc tcaggagact caacggtagc tggtattaca tctgctttag ttcataacga
     1981 tagtgatgag aatttattga aaaaagcaaa tgtacttggt atgttgaatg ctcaagaagc
     2041 gctaacaggt catgtcaatc ttaacaatta cgataattta tttaatcaaa tagaagtaaa
     2101 agaggtataa taatggtatt aacagcacaa aaacgttcat tgatggaaaa agtcagcgat
     2161 aaaaatggtg ttatctcagc tttggctttt gatcaacgtg gggcactcaa aaaaatgatg
     2221 gcgaaacatc aaacagaaga gccaacagtt gaacaaattg aaacattgaa aacaattgtt
     2281 tcagaagaat tgacaaaata tgcgtcttct attcttcttg atccagaata cggtttgcca
     2341 gcatctaaag ctcgagcgga cgaagcaggg ctattacttg cctacgaaaa aacaggatac
     2401 gatgcaagta caacaagccg cttaccagat tgtttggatg attggtcagt caaacgcctt
     2461 aaagaacagg gtgccgatac actgaaattt ttgctatact atgatgtaga tggtgatgag
     2521 caagtaaacc gtcaaaaaca agcatacatt gaacgtattg gttctgaatg taaggcggaa
     2581 gatattccgt tcttccttga aattctgtct tatgacgaag gtattgcaga caacacaggt
     2641 gttgagttcg ccaaagtaaa acctcgtaaa gtgaatgaag cgatgaaagt cttctcagat
     2701 gagcgtttcg gtattgatgt tcttaaggtt gaagttccag tcaatatgaa tttcgttgaa
     2761 ggttttggtg atggtgaagt cgtctacact aaggaagaag cagcacaaca cttccgtgac
     2821 caggaagctt caacacacct accttatatc tatttaagtg cgggtgtttc tgctaaatta
     2881 ttccaagata ccttagtatt tgcggcagaa tcaggtgcca aattcaatgg tgttctttgt
     2941 ggacgtgcaa catgggctgg ctcagttcaa gtctttattg aacaaggtga ggaagcagct
     3001 cgtgaatggt tacgtacaac tggattccaa aatattgatg aattgaacaa ggttttggaa
     3061 aaaactgcta gtccatggac tgaaaaagta taatcataaa aattttcgga ggaaataatc
     3121 atgaatagag aagaaatcac tcttttagga tttgaaattg ttgcttatgc tggagatgca
     3181 cgttctaaat ttttagaagc attgaaggct gcccaagaag gtgactatgc caaagctgaa
     3241 gaattgattg cagctggtgg tgagtgctta aatgatgcac acaatgctca gacaagtctt
     3301 ctacaaaaag aagcagctgg tgaggatctt gcctttagtg ttaccttaat gcatggtcaa
     3361 gatcacttga tgactacaat cttacttcaa gacctaatga aacatatgat tgagttgtat
     3421 aagagaggag caaaataatg aaagggttga ttgctcaaat tgagaaaggg aaacctttct
     3481 ttgagaagat ttctcggaat atttacctcc gtgctattcg tgatggcttt atcgctggca
     3541 tgccggtcat tcttttctca agtattttca tcttaattgc ttatgttcct aatgcttggg
     3601 gattcaaatg gagcgctgat attgaaacac ttttgatgac tccatacaat tactcaatgg
     3661 gaattcttgg attgtttgtt gctggtacaa ctgcaaaagc attaaccgat tcaatgaacc
     3721 gctcattgcc tagcacaaat caaattaact tcatttctac aatgcttgca gcaattgttg
     3781 gcttcctgtt gatggctgct aatccagcaa aagatggtgg tttcttaact ggatttatgg
     3841 gtactaaagg tttgcttaca gccttcattg cagcctttat tacggttaat gtttacaagg
     3901 tttgtgtgaa aaacaatgtc actattcgca tgcctgatga agttccaccg aatatttcac
     3961 aagtatttaa agacttaatc ccatttactg tctcagtcgt attgctttat gctattgaac
     4021 ttcttgtaca taatgcacta ggtgtaaatg ttgcggaatc aattggtaaa ttattagctc
     4081 cattgttcca agcagcagat ggttatgttg gtattaccat tatctttggt gcctttgctt
     4141 tcttctggtt tgttggtatt cacgggcctt caattgttga gcctgctatt gcagccataa
     4201 cctatgccaa tgctgaagct aacttacaat tgcttcaagc aggggaacat gctgataaga
     4261 ttttgacatc aggtactcaa atgttcatcg ttacgatggg tggtactggt gcaacattgg
     4321 ttgttccgtt catgtttatg tggttgacga aatcaaaacg taataaagcg attggacgtg
     4381 cgtccgttgt tcctactttc tttggagtta acgaaccaat tttgttcggt gctccactgg
     4441 tattgaaccc aattttcttc attccattta tcttaacccc aattgttaac gtttggattt
     4501 tcaaattctt tattgatagt ctaggaatga acagttttac tgcaaactta ccttggacaa
     4561 caccagctcc cctaggactt gtactaggta ctaacttcca ggttctatca ttcatcttag
     4621 ctgctgtttt gatagttgtt gatgttgcca tttactaccc attcttgaag gtttatgacc
     4681 aacaaattct tgaagaagaa cgaactggta aatcttcaga tgagttgaaa gaaaaagtag
     4741 ccgcaaactt caatacagca aaagctgatg ccattcttga aaaagcagga gcaactgaaa
     4801 ctgttgaatc aactgttgaa tcaaaagaaa ttactgaaca aacaaatgtt ttggttctct
     4861 gtgcaggtgg aggaacaagt ggtcttcttg caaatgcttt gacaaaagca gctaaagaat
     4921 atggtgctcc agttactgca gcagcaggaa gctatggtgg tcaccgtgaa atcttgccgc
     4981 aatatcagct cgttatcctt gctcctcaag tagcgtcaaa ctatgaagac ttgaaagtag
     5041 aaacagataa acttggtatc aaattagcta agacagaagg tgcacaatac atcaaattga
     5101 ctcgtgatgg acaaggcgct ttggactttg ttaaacaaca aatggaaaat taaaatagac
     5161 aacattaggg aaggttgggg gaactcaact tcccttttta gatgaagagg aaaaacaaat
     5221 gtcaaaaaca ttacctaaag attttatttt cggtggtgca acagcagcat atcaagctga
     5281 aggtgctact aaaacagatg gaaaaggccc ggtcgcatgg gataagtatt tagaagacaa
     5341 ttattggtat acagcagaac ctgcaagtga tttttataat cgttatcctg tcgacttaaa
     5401 gctggctgaa gaatacggtg tcaatggaat ccgtatttcg attgcttggt ctcgtgtatt
     5461 ccctactgga tatggtgagg tcaatcgcaa aggagttgag tactatcata atttatttgc
     5521 agaatgtcat aagcgtggtg tagaaccatt cgttaccttg catcattttg atacaccaga
     5581 agccttgcat tcaaacggtg attttttaaa tcgtgacaat attgaccatt ttgttgccta
     5641 tgctgccttc tgtttcgaag agtttccgga agtgaactac tggactacct tcaatgagat
     5701 tggacctatc ggtgacgggc aatacttagt tggtaagttc cctccaggta tccaatatga
     5761 tttggcaaaa gtttttcaat ctcatcataa tatgatggtt tcccatgcac gtgcagttaa
     5821 gctttataaa gataaaggtt acaaagggga aatcggtgtc gttcatgctt taccaaccaa
     5881 atacccttat gatccagcta atccagatga cgtgcgagct gcagaattag aagatattat
     5941 tcataacaaa tttattttgg atgcgactta ccttggccgt tattctgaga agacaatgga
     6001 aggcgttcag cacattttag cagcaaacgg aggtgaacta gaccttcgtg aagaagactt
     6061 ttctattctc gaagcggcta aagatttgaa tgatttcctt ggaattaact actacatgag
     6121 tgattggatg caagcttttg atggtgagac tgaaatcatt cataacggta aaggtgaaaa
     6181 aggaagttcc aaataccaaa ttaaaggtgt tggtagaaga gaagcaccag taaatgttcc
     6241 gaaaacagat tgggattgga ttatttatcc tcaaggtcta tatgatcaaa ttatgcgggt
     6301 aaaagcagac tatcctaatt ataaaaagat ttacattact gaaaatggtc ttggttataa
     6361 ggatgaattt gtagacggaa cagtttatga tgatggtcgt attgactacg tgaaaaaaca
     6421 tttggaagtg atttctgatg cgatttcaga tggtgctaac gttaaaggat actttatctg
     6481 gtctctgatg gatgttttct catggtcaaa tggatatgag aaacgttacg gtctcttcta
     6541 tgttgatttt gagacacaag aacgttatcc taaaaaatca gcgcattggt acaagaaagt
     6601 tgctgaaact caagtcattg attaatcctt actatgaaag tgtgtaccta tgtttaaaac
     6661 attaaaaaga gtgacaggcg gtgttttaac ttctgcctat gaaaaagttt atattgttaa
     6721 ttttgaaaaa tgtccatata ttccatacat cgatcagaat gttttaaaat ctctagggaa
     6781 atggtatgtc tctactggag gagaatggat ttgtcattca gatttagaat gggatgactt
     6841 caaaacattg tttaacaatc tcttagaagg ttcgttaaaa gggaatgtta gatatgaaat
     6901 ggactatatg ccttttcagc aatcatagag tataattggg gaatcaacta atgaaattaa
     6961 aaaatgatga attaacggtt gaatttaaac cagagggggc gaccatcagt tcgattagag
     7021 atcgagatgg tgtggaatat ctttggcaag gtaatccaga gtactggggt ggtcaggcac
     7081 cagttctctt tcctatctgt ggtagtctaa gaaatgatgg ggccactttt caggttggtg
     7141 aaaaaacaat ttctggatcc atgcctcgcc atgggattgt cagaaaacgc acttttgatt
     7201 tagtaaaaca taccgaaaat gagatacagt ttcgtatttt atctgacgac gagatgttaa
     7261 agcaataccc atttccattt gaactccaac taacataccg cttggatggt aagaggttgg
     7321 aaacagaata tgcaattcga tatttaggtg agttagatgc gatgccattc tttattggag
     7381 gccatccagg atttaattgt ccattattag aggatgaagc ttttgatgac tattacctag
     7441 aattcgaatt ggaagaagat tgcacgattc cagaaagttt cccagagacg ggacttcttg
     7501 atttttcaaa acgtcaacca atgctatcta aaacaagaat tttagacttg aattatgaac
     7561 tgtttcaaca tgatgcgttg acgtttgata accttaaatc tcgaaaggtt gctttgaaaa
     7621 ccaaaaatca tcaaaaagga ttaaaggtat catttgaaga ttttcctttc ttagttgttt
     7681 ggacaacaac caataaagga ccatttattg ctctggaacc gtggagtggc ttatctacct
     7741 ctttgacaga aacggacaac tttatcgata aaactcatgt cacttatgtt gaaaaaggcg
     7801 aagtatctcg caaagcattt acaattgaaa tttgttaatg aatttggca
//
LOCUS       DASGBY010000092         7788 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.092, whole genome shotgun sequence.
ACCESSION   DASGBY010000092 DASGBY010000000
VERSION     DASGBY010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7788
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.092"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(1271..1909)
                     /locus_tag="U1396_001494"
     CDS             complement(1271..1909)
                     /locus_tag="U1396_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM5342679.1"
                     /translation="MIIHKSVNPVAFQNTYYLENDTHLIIIDPGSDWTKIQVTIEKIG
                     KPISAILLTHTHYDHIMSLDILRETYNFPPVYVAESEASWLYTPEMNLSGLPRHDDME
                     NVVCRPAEKIFQYQEEYQFDGFHFKVVPTPGHSIGGVSFIFPEDECVITGDALFRETV
                     GRTDLPTSNFDDLITGIREHIFPLPNHYTVHPGHGQNTSVGHEKNFNPFFRM"
     gene            1972..4485
                     /locus_tag="U1396_001495"
     CDS             1972..4485
                     /locus_tag="U1396_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DnaQ family
                     exonuclease/ATP-dependent helicase"
                     /protein_id="HEM5342680.1"
                     /translation="MEFVWSFFHEREYAIMNSMKDTRTSNRYAVVDLEATGTGTDAKI
                     IQIGIVLVENGEIIDSYATDINPYELLDDHIKNLTGITDQQLSQAPDFGQVASTIYDM
                     IGDAIFVAHNVKFDANLLAEALFFEGYELLTPRVDTVELSQLFFPTFEKYSLGNLAEH
                     LELGLDQAHTAISDALATARLLIKIQEKIKSLPRSIVEKILDLADNLLLESRLVIDEM
                     VPVLSENLSYDLESIHDLVLKKPEEIKSAYRLSEDFSTNIALLGLHERKKQTAFAQVV
                     EKRLVDEEKVHFIQAQAGLGKTYGYLLPILAKSEQLLVVTVPTKLLQEQIMEKEGSKL
                     KEIFRIPVVSLKSPKHFIKLDNYWKTLQRQDDNRLVNQFKMQVLVWLCETTTGDLDEL
                     KQKQRYQAYFDEIAHDGKLEPESLFWGWDFWQRLNQQALSSRLLITNHAYFLNHLKDQ
                     DLLMDKRLVVIDEAQKFLLAAENLATASQDLTSMLQVLQSKKDRATTILDQRLYESCQ
                     FELNHFLSRFRQHGQREVQKAELHQLGQNLEELGDIDLNDLHQLIDYYDTFWLEEKNL
                     EEKRLAYLRGSKDSLLNATNYLPDTKIFCISATLTISKKVSLADLLGFEQVTLDLIPT
                     QTVTNQQLLFPTHLPDILAWTKEEHAAYLATTLGEIAELGRPILVLFTSISLLLQVSD
                     LLEGNNIPHLAQHKHGQEMTLKRKFERGECQILLGTGVFWEDVDFASQNQLIQVITRL
                     PFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMIKLKQAIGRTNRHDKQDSLVLVLD
                     PRVHTKRYGQQILSFFEKDYSMLSVDAKEIEGAIQDFFE"
     gene            4646..5722
                     /locus_tag="U1396_001496"
     CDS             4646..5722
                     /locus_tag="U1396_001496"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEM5342681.1"
                     /translation="MTEKTIVFKVGTSSLTQENGSLDRIKIARITNQLAQLHQKGYQI
                     VLVTSGSIAAGFRRLGFEKRPTKIAEKQASAAVGQGLLIEEYTQNLMKDGIVSAQILL
                     TQDDFADARRYQNASQALQVLLKQRVIPIINENDTIAIEEIKVGDNDTLSAQVASLLK
                     ADLLVLLTDVDGLYTANPNSDPNAKHLPVITEITEDLFAMAAGAGSSNGTGGMTTKLQ
                     AAQIATKSGVPVFICSSKEDTALLQAVTQANRGTLFLADDHAMNQRKQWMAFYARTDA
                     AVEVDAGAVDAMLHQGRSLLATGVKALEGDFEVGQVVEVYSQADHRLIGKGRVKLSSK
                     DLQDQLANGRAEGVFIHRNDWVSL"
     gene            5732..6970
                     /locus_tag="U1396_001497"
     CDS             5732..6970
                     /locus_tag="U1396_001497"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEM5342682.1"
                     /translation="MTTTQALLDSLLAHKASINLATTEQKNQALSAMADQLVAQTEAI
                     LAGNAIDMEHAQGKISQVMQDRLLLTAERIEAMADGIRALIGLPDPVGLILEESARTD
                     GLNICKKSIPFGLVGMIYESRPNVTSDAAALAIKSGNAVILRGGKEAFHSAQAIVTAL
                     KAGLEQVGLSPKVIELVQDTSRASATELMTAKGKIDLLVPRGGAGLIQAVVENATVPV
                     IETGTGICHVYVDKDADLNKALRIVVNAKTSRPSVCNAAEVLLVHEEIASQFLPRLEE
                     ALSGQVELRADSQAQTLLNQSTPAGEQDFDTEFLDYVLAVKVVSNVEEAISHIAQHST
                     GHSEAIVTENSQTAELFTLHVDSAAVYVNASTRFTDGGEFGLGCELGISTQKMHARGP
                     MGLREMTTYKYIITGDGHIR"
     gene            6980..7765
                     /gene="proC"
                     /locus_tag="U1396_001498"
     CDS             6980..7765
                     /gene="proC"
                     /locus_tag="U1396_001498"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM5342683.1"
                     /translation="MKIGFIGLGNMGAALAHAVSQLPETQLLLSNHNPAKAQALQEKV
                     GGQLFSNGQIAEQAEIIFLGVKPHLIQTVLSGLQDQISQNPSAIWISMAAGVTLDSLA
                     AFVSADKLIRIMPNTPVAIGQGMTTYSLVNQELAPLLEQILEKSGKVQQMPESLIDAA
                     TAIAGCGPAFVYQMIEALTDAGVENGLTAQDAKVLAAQTLAGTAQMVLTSDKHPAQLR
                     QEVTSPGGSTIAGVVALEKEGFRYAIIKAVAAALKKTRKLGKK"
BASE COUNT         2239 a         1645 c         1833 g         2071 t
ORIGIN      
        1 attgttgctt tttgtgaacc acgccgactt tgaatctgat aatatcgttc tgctaatggg
       61 ctgccttttt gtcttttgac agcgaaggcc gcttgacata agcatttctt ccaataggaa
      121 ttcccgtgtc gaatcttggt acttcgtttt tcccactctc taggattttt tattatatga
      181 cttttagtcc atcacaatcc gtaaagtatg tgacaaatga accgaggatg ggcaaaaaat
      241 ggtcctataa tttctgtagc gggtaaaacc actatggagc cttttaaatg taaaagccat
      301 atgacctata atgaaaagcg acaaaactta cattagaaag aggtcatatg gaataaatca
      361 agagttaggg gagtgactct tgattcctga gcctagaaat agaaaagcga agatcttatc
      421 acaaattttc ttggaataga agacaaaaat atcgctatca tgactgaata tgatgtggaa
      481 actcacttag attgtgtgtc tccaaaatgt cttgcctgaa agggacaaat agtgaaatac
      541 aacttccaaa gagcatctaa aatcctttgc ttagaagcag ctgataatcc tttctcctta
      601 tccatcttag aaagcgtcgg ttcaagtgta aaggatgcgg gaaaatggtt gtcgctgaaa
      661 ttcacttatt aaaaaaacga ccaaatctct gttgctatta accagaaaaa aaccaaatta
      721 ctactcgttg agaatcaagc aaagagtaag caatgttcac ctgatactat tgtcatcaag
      781 gatagctttt ccatcctatt cggaactata aagtaagagt ttttgaaggg ggtagatatt
      841 ggttgcatgt attgaaaaac ttgtggttcc atggttttta aggttactct atctggctat
      901 attttgaact atgttattac accaatttct gattatgtag tgaattgctt gttggaaggc
      961 tatcagtaat ctgtgatttt agcagattta gtcaggagtt taaagacaac ttggaacaga
     1021 aggatagaac atggaaggag ttaattagta taacaaatgg agattattag ccatgaggcg
     1081 aaccattgaa actcgttttc tgaatcatac gctttgtttg atatagaaca aacctttgcc
     1141 agaggactgc tcggattaca gctacggatt gaacaaatcc tacttatcta caatctaagc
     1201 tattttgact ttaactagta gcacgggtaa aaaaactgcc tagttcaatc agaactgggc
     1261 agtacttatt ttacattcta aaaaatggat tgaagttttt ttcgtgtcca acgctggtat
     1321 tttgaccatg acctggatgg acagtatagt ggtttggcag gggaaagata tgttctctga
     1381 tgccagtaat caggtcatca aagttgctgg ttggcaggtc tgtgcgtccc acagtttcac
     1441 ggaaaagtgc gtctccagtg atgacacatt catcctctgg gaagataaag gaaacaccac
     1501 caatagagtg cccaggtgtt ggaactacct tgaaatgaaa accgtcaaac tggtattctt
     1561 cttggtattg gaagattttt tcagcaggtc ggcagactac attttccata tcatcatgac
     1621 gaggtaggcc tgatagattc atctctggtg tgtagagcca gctggcttca ctttcagcca
     1681 catagacagg cgggaaattg taggtctcac gcagaatgtc caaactcata atatggtcat
     1741 agtgagtgtg agtcaggaga atagccgaaa ttggttttcc gattttttcg atagttactt
     1801 gaatttttgt ccagtcactc ccagggtcaa tgataatcag atgggtatca ttttcaaggt
     1861 agtaggtatt ttgaaaagcg acaggattga cagatttgtg aataatcatt ctttttcctt
     1921 cttctaacag ttactgatgt tactagtcta acaaaaaaac acgccttctt catggaattt
     1981 gtttggagct ttttccatga gagggaatat gctataatga acagtatgaa agacacaaga
     2041 acaagcaatc ggtatgccgt tgtagatttg gaagcaactg gtacaggtac cgatgcaaaa
     2101 atcattcaaa tcgggattgt tctcgttgaa aatggagaaa tcattgacag ttatgcaacg
     2161 gacatcaatc cctatgagct actggatgac catatcaaga atctgacagg tatcacagac
     2221 caacagctaa gtcaggctcc agattttggt caggtagcaa gtaccattta tgacatgatt
     2281 ggagatgcta tttttgtagc ccataatgtc aaatttgatg ccaatctctt ggcagaagca
     2341 ctcttttttg aaggctatga actgttgaca ccgcgtgtag atacggtaga attatcacag
     2401 ctatttttcc cgacttttga aaaatatagc ttgggaaatc ttgcagagca tttggaactt
     2461 ggtttggacc aggcacacac ggccatatca gatgctctgg caacggctcg cttgctcatc
     2521 aaaattcaag agaaaataaa gagcctaccc aggtctattg ttgaaaagat tcttgatttg
     2581 gcggacaatc tgctcttgga atcccgtctg gtcattgatg agatggtgcc tgttctgtca
     2641 gaaaatctat catacgattt agaatctatt catgacttgg tcttgaaaaa gccagaagaa
     2701 atcaagtcag cctaccgatt atctgaagat ttttcgacca atattgccct tctcggcttg
     2761 catgaacgaa aaaaacaaac tgcttttgct caagtagtag aaaaacgctt ggttgacgaa
     2821 gaaaaagtgc attttattca agcgcaggca ggtttgggga agacttacgg ttatctcttg
     2881 cctatacttg ctaagtcaga acagctttta gtggtcaccg taccgaccaa gctccttcaa
     2941 gagcagatta tggaaaagga agggagcaag cttaaagaga tatttcgtat tcccgtagtc
     3001 tctctaaaat cgcccaagca ttttatcaag ttagacaact actggaaaac cctgcagagg
     3061 caggatgata atcgcctggt caatcaattc aaaatgcagg tgcttgtctg gttatgcgaa
     3121 accacgacag gtgatttgga tgagcttaag caaaaacaac gctatcaagc ttactttgat
     3181 gagattgccc acgatgggaa attggagcct gaaagtcttt tttggggctg ggatttttgg
     3241 caacgattga accaacaagc tctctctagt agactgctca ttaccaacca cgcttatttt
     3301 ctcaaccatc ttaaggatca agacctactc atggataagc gtctggtggt gattgatgaa
     3361 gcacaaaagt ttctcttggc tgctgaaaat ctagcgacgg cttcgcaaga tttgacaagt
     3421 atgttacaag tattgcaaag taaaaaggac agagcgacga ctattttgga ccaacgtttg
     3481 tatgagtctt gccagtttga actcaaccac tttttgagtc gttttcgtca gcatggtcaa
     3541 cgagaggttc aaaaggctga acttcatcaa cttggtcaga acctggagga gcttggagat
     3601 attgatttga atgacttgca tcagctcata gactattacg ataccttttg gttggaggag
     3661 aaaaatttag aagaaaagcg gcttgcctat ttgcggggtt ccaaggacag cctcttaaat
     3721 gcgaccaact acctgcctga taccaagatt ttctgcatca gtgccacctt gacaatcagc
     3781 aaaaaggtca gtctggcgga tctgttgggc tttgagcagg tcaccttgga tttgataccg
     3841 actcaaactg tgaccaacca gcagctgctt tttccgaccc atctccccga tatcctcgct
     3901 tggaccaagg aggagcatgc agcttatttg gctactactt taggagaaat agcagagctg
     3961 ggacgaccga ttttggtctt gttcacatcg atttctctgc tcttgcaggt gtcggatttg
     4021 ttagaaggca ataacattcc ccacctagcc cagcacaagc atggacagga aatgactctc
     4081 aaacgcaaat ttgaacgagg ggaatgccaa attttactcg gcacaggtgt attctgggag
     4141 gacgttgact ttgccagtca gaatcaattg attcaggtta ttacaaggct cccatttgac
     4201 aatccaaagg accggtttgt acaaaaaatc aatcaccatc tgcgtgaaga agggaaaaat
     4261 ccattttatg attacagcct gcctatgatg atgattaagc tcaaacaagc catcggtcgt
     4321 accaatcgcc atgacaaaca agattcacta gtcttggttt tggacccgcg tgttcacacc
     4381 aaacgctatg gacagcaaat tctgtccttc tttgagaaag attattcaat gttaagtgtg
     4441 gatgcgaaag aaatagaagg agctattcaa gatttttttg aataagttga aagggagcca
     4501 caaggcttcc ttttgtttcc agcgtttttt aatgctactc ttgattagga atctattccc
     4561 tctctccttg ccgaataaca gtgattttct ttatgattaa aatatggtat aattttccaa
     4621 atattagttt ttgtgagaag agattatgac agaaaaaaca attgtattta aggtcgggac
     4681 aagttctctg acccaagaaa atggcagtct ggaccgtatc aagattgctc ggattaccaa
     4741 tcagctggct cagttgcatc agaagggcta ccagattgtg ctggtgacgt cgggctcgat
     4801 tgctgctggt tttcggagat tgggctttga gaaacgacca accaagattg cggagaagca
     4861 ggcttctgcg gccgttggac aaggtttgct gattgaggaa tatacgcaaa atctgatgaa
     4921 agatggcatt gtgtcggctc agattttgct gacccaggat gattttgcgg atgccagacg
     4981 ttatcagaat gcctctcaag ccttacaggt cttgctgaaa caacgtgtta ttcctattat
     5041 caacgaaaat gataccattg ccattgagga gattaaggta ggggacaatg atactttatc
     5101 tgcccaggtg gcttctctct tgaaagcaga cctcttggta ctcttgacgg atgtggatgg
     5161 gctttacacg gccaatccca acagcgatcc caatgccaaa catttgccag tgattacgga
     5221 aattacggaa gatttatttg ccatggcagc aggagctggc tcgtccaacg gaacaggtgg
     5281 catgaccacc aaattgcagg cggcccagat tgcgaccaag tcaggcgtgc ccgtctttat
     5341 ctgctcttca aaagaggata ccgccctctt acaggcggtc acccaagcca atcgtggaac
     5401 gctcttttta gctgacgacc acgccatgaa ccaacgcaag cagtggatgg ccttctatgc
     5461 tcggacagac gcagcagttg aagtggatgc aggagcggtt gatgccatgt tgcaccaggg
     5521 ccgcagtttg ttagctactg gtgtcaaagc cctggaaggc gactttgaag tgggccaggt
     5581 cgtagaggtt tatagccaag cagaccatcg tttgattggt aaaggacggg tcaaactgtc
     5641 ctccaaggac ttgcaggacc agttggcaaa tggcagagcg gaaggtgtgt ttattcaccg
     5701 caacgattgg gtgagcttat aggagaaaga tatgacaaca acacaagcat tattagatag
     5761 tttattggcc cacaaggctt ctatcaacct agcgacaaca gaacagaaaa accaggccct
     5821 atcagcaatg gcagaccagt tggttgctca gactgaggca atcctagcag gcaatgccat
     5881 cgatatggaa catgcccagg gaaaaatcag ccaagttatg caggatagat tgctcctgac
     5941 tgctgagcgg attgaagcta tggcagatgg cattcgtgcc ttgattggct tgccagatcc
     6001 agttggtttg atcttggaag aatccgctcg gacagatggc ttgaacatct gcaagaaatc
     6061 cattcccttt ggtttggtgg gaatgattta cgaaagccga ccaaacgtga cttcagatgc
     6121 cgcagccttg gccatcaaga gcggaaatgc agtcatcttg cgtggtggca aggaagcttt
     6181 tcattcggcc caggctattg tcacagccct caaagctggt ttggagcagg ttggcctttc
     6241 accaaaggtc atcgagttag tccaagatac cagccgtgcc tctgcgacag agttgatgac
     6301 cgcaaaaggc aagattgacc tcttggtgcc acgtggcggt gcaggactca ttcaagccgt
     6361 cgttgaaaat gcgactgtgc cagttataga aacaggcacg ggtatctgcc atgtctatgt
     6421 ggacaaggat gcggacttga acaaggcctt gcggattgtg gtcaatgcca aaaccagtcg
     6481 tccctcagtc tgcaatgcgg cggaagtctt gttggtccat gaagaaattg ccagccaatt
     6541 cctacctcgc ttggaagaag ctctatctgg tcaggtggaa ttgcgtgctg acagtcaggc
     6601 acagactctt ctcaaccaat ccacaccagc aggcgagcag gattttgata cagagtttct
     6661 ggattatgtt ttggcagtta aagtcgtttc aaacgtagaa gaggctatca gccacatcgc
     6721 tcaacactcg acagggcaca gcgaggccat cgtgacggaa aacagccaga cggctgaact
     6781 tttcacactc catgtggatt cggcggcagt ctatgtcaat gcctcgaccc gcttcacaga
     6841 cggtggcgag ttcggtctgg gctgtgagct aggtatttct acccagaaga tgcacgcccg
     6901 tggtccaatg ggactgcgtg agatgaccac ctacaagtac atcatcacag gcgacggcca
     6961 cattcgttag gaggacaaga tgaagattgg atttatcgga ctgggcaata tgggagcggc
     7021 attggctcat gcagtcagcc agttgccaga aacccagctc ctcctcagca accataaccc
     7081 agcaaaagcc caggctcttc aagagaaggt aggcggtcag cttttttcta atggacaaat
     7141 agcagagcag gccgagatta ttttccttgg ggtcaagcct cacctgattc agacagtctt
     7201 gtcaggcttg caggaccaga ttagccagaa tccatcagct atctggattt ccatggcagc
     7261 aggagtgacc ctcgacagcc tggcagcatt tgtatcggct gataaactca ttcgtatcat
     7321 gcccaacaca ccagtcgcta tcggccaagg catgacgacc tatagcttgg tcaatcaaga
     7381 gctcgctccg ctattggaac aaattctaga aaaatcaggc aaggtccaac agatgccaga
     7441 gagcctaatc gacgcagcaa cggctatcgc aggctgcgga ccagcctttg tctatcagat
     7501 gattgaggct ttgaccgatg caggagtgga aaacgggctc acggctcagg atgccaaggt
     7561 attggcggct cagaccctgg caggaactgc tcagatggtc ttaaccagcg acaagcaccc
     7621 agcccagctg agacaggaag tgacctcgcc aggcggctcg actatcgcag gtgtggtagc
     7681 tcttgaaaaa gaaggcttcc gttacgccat tatcaaggca gtcgccgccg ccctcaaaaa
     7741 gactagaaaa ttaggcaaaa aatagaagac agcaaaaaac gggacttt
//
LOCUS       DASGBY010000093         7528 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.093, whole genome shotgun sequence.
ACCESSION   DASGBY010000093 DASGBY010000000
VERSION     DASGBY010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7528
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.093"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(76..1743)
                     /gene="dnaX"
                     /locus_tag="U1396_001499"
     CDS             complement(76..1743)
                     /gene="dnaX"
                     /locus_tag="U1396_001499"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEM5342684.1"
                     /translation="MYQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSG
                     PRGTGKTSAAKIFAKAMNCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDE
                     IRDIRDKSTYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHK
                     IPATILSRVQRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALS
                     ILDQALSLSQDQQVTLEIAEEITGSISLRALDDYVASLRQGDSVTALQHLQTLFDQGK
                     SMSRFATDLLHYLRDILIVQTGGEDTHLTTGFSENLALEQARIFTMIEMVTRGLADIK
                     SSPQPKIYAEMMTIRLAEDSSPSGAMAELPADLLGQLASLQQQVADLQKQLGQLSSQP
                     SAVKPVSRKPQAPKKYRLDTSKVHAILQEAMENPTLARENLTRLQNAWGEIIESLSGA
                     DRALLVGSQPVAANENHAILAFDSPLNAEQTMKRDNLNTMFGNILSKAAGFSPQILAI
                     AQEDWVSIRAEFSAKAKGQKTQEIEKEASPVPEEFGFLADTVEIRND"
     gene            complement(1743..2240)
                     /locus_tag="U1396_001500"
     CDS             complement(1743..2240)
                     /locus_tag="U1396_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEM5342685.1"
                     /translation="MTKQEKISNYQLLLAQLEALLEGETNALANLSNASALLNQALPN
                     SVFTGFYLYDGSELILGPFQGGVSCVHIALGKGVCGEAAAKRQTILVDDVRLHDNYIS
                     CDATALSEIVVPMVKNDQLLGVLDLDSRLVADYDTIDQDYLEKFVALLVEKTDWNFAM
                     FGEKR"
     gene            complement(2305..2574)
                     /locus_tag="U1396_001501"
     CDS             complement(2305..2574)
                     /locus_tag="U1396_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM5342686.1"
                     /translation="MSIKQMVSMALVVWNLVVFITYGMDKGKARKNAYRISEKTLLLM
                     SYFGGGLGAWAGGTHFRHKTQKKYFQLAWAIGVLIDAVIMYWMWK"
     gene            complement(2662..3202)
                     /locus_tag="U1396_001502"
                     /pseudo
     CDS             complement(2662..3202)
                     /locus_tag="U1396_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775286.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
     gene            complement(3204..3833)
                     /gene="udk"
                     /locus_tag="U1396_001503"
     CDS             complement(3204..3833)
                     /gene="udk"
                     /locus_tag="U1396_001503"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM5342687.1"
                     /translation="MTQKPIIIGVTGGSGGGKTSVSRAILDNFPNARISMIEHDSYYK
                     NQSHLTFEERILTNYDHPLAFDTDLMIYHISELLAGRSVDIPIYDYTQHTRSEKTYRQ
                     EPQDVFIVEGILVLEDKRLRDLMDIKIFVDTDDDIRIIRRIKRDMEERGRSLDSIIEQ
                     YTSVVKPMYHQFIEPTKRYADIVIPEGVSNVVAIDLINTKVESILRERG"
     gene            3916..4902
                     /locus_tag="U1396_001504"
     CDS             3916..4902
                     /locus_tag="U1396_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM5342688.1"
                     /translation="MLNFGIVGTSDISHRFIEAAHLSGHYQLQAVFSRKLETAAAFSE
                     QYEGVDLYTEWVKFLSAPIDVVYIASPNALHFEQAKAVLAAGKHAIVEKPMVSTPQEL
                     EQLRRVAQENNVFLFEAARNYHEQAQAIIREFLTDKTILGGSFGYAKYSSKMPELLAG
                     QMPNIFSTDFSGGALMDLGVYTLYAAIGILGTPRTARYVAQQLPSSIDLNGSGQLIYD
                     NYIVHIQAGKNITSNLASEIYTNDGTLTLNACQYISSAIFTKHDGEQIVLPIQAAQHP
                     MLEEALEIAQAIKQQNRKLVDQWLAVAESVHQTLYTMRQDAGIIFKADNNEI"
     gene            4892..5974
                     /locus_tag="U1396_001505"
     CDS             4892..5974
                     /locus_tag="U1396_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5342689.1"
                     /translation="MKSKFPSSWTDQLTLLGFEDFTPIQVQAFEPIANGKSLLAISPT
                     GTGKTLAYLWPSLLALTPKKAQQLLILAPNTELAGQIFDVCKTWSETIGLTAQLFLSG
                     SSQKRQIERLKKGPEILIGTPGRIFELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFV
                     EKIINYVPRDHQLIYMSATAKFDRQKIAEDIESIDLSEQKLDNIQHCYMMVDKRERLE
                     TLRKFANIPDFRALAFFNSLSDLGASEDKLLYNGVNAVSLASDVNVKFRKVIIERFKN
                     HELNLLLATDMVARGIDIDNLECVLNFEVPFDQEAYTHRSGRTGRMGKEGLVITLVSS
                     PSELKQLKKYASVQEVILKNQELYKI"
     gene            complement(6041..7438)
                     /locus_tag="U1396_001506"
     CDS             complement(6041..7438)
                     /locus_tag="U1396_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM5342690.1"
                     /translation="MKKVSFWLGINIALLGIMVSLAVWLFAGLQERQVSQFIEEKQQT
                     ILAKGKGKIQEGNIDTTHVVAALPTDDAGHVLGPVESRMISYVQRRFGHKKPAGKIQN
                     LVFVSSIEGKTNFKNVTAREIQAEQYKVDNLQIKKQDKLPSERVLLTQDNKLFTLEDL
                     LPNLSSTASIIVGHLREALLAQGMKETDVEAIVKKFETLDLNAISFSYGDSQLTLQLP
                     DGYGINQLVLPISDLYPVVKSDYLVDADKVGYDEYMAAQVVDKKHLRQVALTFDDGPN
                     PNTTPVVLDLLKKYNAKATFFVVGKAVAGNEAILRRMVAEGHVIANHTWNHPNLVTIS
                     GEQVQREIQDTQAAITEATGIVPTMVRPPYGSVNQAVVNQIGLPSIYWSVDSKDWKSR
                     NPQAILKEIKEQTCPGSIILMHDIHQSTVDSLESVLQYLTGEGYNMVTVTDLLASPLN
                     PQLIYYSQELSGPAQ"
BASE COUNT         2168 a         1740 c         1424 g         2196 t
ORIGIN      
        1 atgaaaaata tttaggattg aatatagtat aaaatatcta tcaaaactat tcatcagtct
       61 taggactgat attttctaat catttctaat ctcaactgta tctgcgagaa agccaaattc
      121 ttctgggact ggactggctt ctttttcgat ttcctgtgtc ttttgccctt ttgctttcgc
      181 cgaaaattca gcacgaatac ttacccaatc ttcctgagca atagctaaaa tctgtggcga
      241 aaaacctgcg gccttgctga gaatatttcc aaacatggta ttgagattgt cacgcttcat
      301 cgtctgttca gcattaagcg gagaatcaaa ggctagaatc gcatgatttt cattggcagc
      361 aactggttga gaaccaacaa gcaaggcacg atctgctcct gacagactct cgataatttc
      421 tccccaagca ttctgcaagc gagtcaaatt ttcacgcgcc aaggttggat tttccatagc
      481 ttcctgcaaa attgcatgaa ccttgctggt atccaatcgg tacttcttcg gagcctgtgg
      541 cttgcgtgaa actggcttaa cagcacttgg ttgactagat aattgaccta gttgtttctg
      601 taaatccgca acttgttgtt gcagactggc tagttgcccc agtaaatcag ctggcagctc
      661 tgccatggcc cccgaaggag aactatcttc agccaaacga atggtcatca tttcagcgta
      721 aatcttcggt tgaggactgg acttgatgtc cgccaaaccc ctggtcacca tctctatcat
      781 ggtaaaaatc cgtgcctgct caagagctag attttctgaa aaacctgttg ttaaatgcgt
      841 atcctctcca cccgtctgca cgataaggat atctctcaaa tagtgcaaaa gatctgtcgc
      901 aaaacggctc atactctttc cttggtcaaa caaggtttgt agatgctgga gagctgtgac
      961 actatcccct tgacgcagac ttgccacata gtcatccaag gcacgcaagc tgatagaacc
     1021 cgtaatttcc tcagcaattt ccaaggtcac ttgctggtcc tgactaaggc tgagagcctg
     1081 atccaaaatg gatagggcat cccgcatccc cccttctgcc cggcgcgcaa tgattgtcag
     1141 agcctgctcg tcaaagatta gcccttcctt ggtcaaaatt gcagccaagt gctcctgaat
     1201 gtccgtcacc ttgatggact taaattcaaa tcgttgcacc cttgacaaaa tagtagcagg
     1261 aatcttgtgc aattccgtcg ttgctagaat aaagaccaca ttttcagtcg gctcttccaa
     1321 ggtcttcaag agggcattga aggctccagt agacagcatg tggacctcgt cgatgatata
     1381 gaccttatag gtcgcaagac taggtgcata ggtcgattta tcacgaatat cacgaatctc
     1441 atccacacca ttgttggaag ccgcatcaat ctcaatgaca tcttccaggc taccttccgt
     1501 aatagcctga cagatataac aatcgttaca aggctcgcct ccaacctgat tgggacagtt
     1561 catggccttg gcaaaaatct tagctgccga tgtcttaccc gtaccacgag gacctgaaaa
     1621 gagataggca tgactgattt tcccctgttc aatggcctgt ttgagcgtgg tcgcaaccac
     1681 ctcctgcccc accatctccc caaaggtctg gcttcggtac ttcctatata aagcttggta
     1741 cattagcgtt tttctccaaa catagcaaaa ttccagtccg tcttctcaac caagagagca
     1801 acgaactttt ctagatagtc ttggtcaatc gtatcataat cagctaccaa tctcgaatcc
     1861 aagtccaaaa cgcccagcaa ctggtcgttt ttcaccattg gcacaacgat ttctgatagg
     1921 gctgtcgcat cgcaggaaat atagttatca tgtagacgaa catcgtctac gagaatagtc
     1981 tggcgcttag ctgcagcctc accgcagaca ccctttccaa gtgcaatatg aacacaggaa
     2041 acgccaccct gaaaaggccc caaaatcaat tcactaccat catacaagta aaatcctgta
     2101 aagacagagt ttggtagagc ttgattgagc aaagcagaag catttgacag attggctaaa
     2161 gcattggttt cgccctctaa aagcgcctcc aattgggcca ataatagttg atagtttgaa
     2221 attttttctt gttttgtcat aggaacatta tagcatagtt aagccgactt ttatagtccg
     2281 agcgataaag aaaaaggctt gcgcctattt ccacatccaa tacataatca ctgcatcaat
     2341 caatacccct atagcccagg ctagttgaaa atactttttc tgtgtcttat gccgaaaatg
     2401 ggttccacct gcccaggcac ccagcccgcc accaaaatag gacatgagta ataaggtctt
     2461 ttctgaaatc cgataggcgt tctttcttgc cttcccttta tccataccat aggtaatgaa
     2521 gacaactaaa ttccaaacta ctagcgccat actaaccatc tgtttgattg acatacattc
     2581 ctccaattaa gtcacatttc ttcttactct aacataatcc aaaacaggac acaaggaaaa
     2641 acgattcgga aatccgaatc gttacatttc cgccagtgta tcctctaacc atttgagctg
     2701 ggcacggttg cgttcaatag cccgtgtcaa aatcaaatag tgtccataat tgtcttggat
     2761 actttccttg gttgagaaca gctcaacttt acgactttct aggtgtttta agtgcttggt
     2821 gactagttca atttgactct gcaacaaacc aggaatccgt gggtcatcct tttcacggat
     2881 aaaaaaacat cttgattgaa aacaagtctc tttgctgagg cgtttcttca tttggaatgg
     2941 atagccattc gtctaaaatc tgacgaccag tagccgtcat cgcatactgc ttttcctttt
     3001 catttccagg tactgcatga caagtaatca attcttcctt ggtcatacgt tttaattctg
     3061 gatagacttg gctatgggca acctgccaaa attcgcctaa atcacgttga acatagtcgg
     3121 taatctgctt gccagttacc atttgaccgc tagcacccat aatccctaat atgatatgag
     3181 gtaatattct ttgcttcggc atcttaacca cgctctctta atatactctc caccttggtg
     3241 ttaatcaagt caatagctac aacgttgctg acgccttcag gaatgacgat atctgcatag
     3301 cgcttggttg gctcgataaa ctggtgatac attggtttca ccaccgaggt gtactgctca
     3361 atgatactat ctaagctacg gccacgctct tccatgtctc tcttaatgcg gcgaatgata
     3421 cgaatatcgt catcagtatc gacgaatatc ttaatatcca ttaaatcccg caaccgtttg
     3481 tcttccaata ctaaaatacc ttccacaata aatacatctt gtggttcctg acgataggtc
     3541 ttctctgaac gtgtgtgctg agtgtaatca taaatcggaa tatccactga acgtcctgct
     3601 aatagctcac tgatatgata aatcatcaaa tccgtatcaa aagccagtgg atggtcataa
     3661 ttggttagta tccgttcttc aaaggtcagg tgggactgat tcttataata agaatcgtgt
     3721 tcaatcatag atatacgagc atttgggaaa ttatccagaa tggcacgcga cacacttgtc
     3781 ttgccacccc cagatccgcc ggttacgcca ataataatgg gtttctgagt catcatcatc
     3841 tccttctatt ttcaatacta ttttaccatg aaacatggta taatgaaaag gataacacaa
     3901 aagaaatgag aatttatgct taattttggt attgttggca cctcagacat ctctcatcgt
     3961 tttatagagg cggcccattt aagtggacat tatcagctac aggctgtttt ctcccgtaaa
     4021 ctagaaactg ccgctgcctt ttcagagcag tatgaaggag tcgatttata cacagaatgg
     4081 gtaaaatttc tttctgcccc cattgatgtt gtctatattg ccagtccaaa tgccctgcac
     4141 tttgaacagg caaaagctgt tctagctgct ggtaaacatg ctattgttga gaagcccatg
     4201 gtttctacac ctcaggaatt agaacaattg cgtcgcgttg cccaagaaaa taatgttttc
     4261 ctctttgagg ctgctcgaaa ctatcacgaa caagctcaag ccattatccg tgaatttttg
     4321 acggataaaa cgattttagg tggttcattt gggtatgcca aatattcttc taagatgcct
     4381 gaattgttag ctgggcaaat gccaaatatc ttttcaactg atttttccgg tggtgctctc
     4441 atggatttag gtgtctatac gctctacgcc gctatcggca ttttgggaac tcccagaacg
     4501 gcccgctatg tagcacaaca gctaccttct agtattgact taaatggttc gggacaactc
     4561 atttatgaca actatatcgt ccacattcaa gcaggaaaaa atatcacgag caatctagcg
     4621 agcgaaatct atacaaatga tggaacacta acactcaacg catgccagta tatcagctct
     4681 gctattttca caaaacatga cggagagcaa attgttttac caatccaagc ggcccagcat
     4741 cctatgctcg aagaagcgct agaaattgca caggcaatca agcaacaaaa ccgcaagctt
     4801 gtggaccagt ggttggctgt ggcagaaagc gtccatcaaa cactttacac catgcgtcaa
     4861 gacgcaggaa taatctttaa ggcggataac aatgaaatct aaatttccct ctagctggac
     4921 ggaccagctt accctacttg gctttgagga ctttactcct atccaagtcc aggccttcga
     4981 gcctattgca aacggcaagt cccttctagc tatcagccca acaggcacag gaaaaaccct
     5041 tgcctacctc tggcctagcc tattagccct aactcctaaa aaagcccaac aattgctcat
     5101 cctcgcaccc aatacagagc tggccggcca aatatttgat gtttgtaaga cttggtcgga
     5161 gacaattggg ttgactgctc aactattctt gtctggttcc agtcaaaaac gccagattga
     5221 gcgactaaaa aaagggccag aaatcctgat tggaacacct ggtcgtattt tcgagttgat
     5281 taaattgaaa aaaatcaaga tgatgaatat caacaccatc gtcctagatg agtttgatca
     5341 gctattctcc gattctcaat atcagtttgt tgaaaagatt atcaactatg tacctcgtga
     5401 ccaccagtta atctacatga gtgcaacagc taaatttgac cgtcaaaaaa ttgctgaaga
     5461 cattgaaagc attgatttat ctgagcagaa attggataat atccagcatt gctatatgat
     5521 ggtagataag cgtgaacgtt tggaaactct acgtaagttt gccaatatcc ctgattttcg
     5581 tgctcttgca ttttttaaca gcctatcaga ccttggtgca agcgaagata aactactcta
     5641 taatggtgta aatgcagttt cattggcttc tgatgtcaac gtaaaattcc gcaaggtcat
     5701 catcgaacgt ttcaagaatc acgaactcaa tcttctactt gctacagata tggtcgcacg
     5761 cggtatcgat attgataact tagaatgtgt cctcaacttt gaagttcctt ttgaccaaga
     5821 agcctacact catcgttctg gacgtactgg acgcatgggc aaggaaggtc ttgtcatcac
     5881 cctagtatct agtcctagcg aattaaaaca attgaaaaag tatgcctccg tccaagaagt
     5941 cattctcaag aatcaagagc tttacaaaat ataatgaaca atatacaaaa ggcttagaat
     6001 catgttagta gaaacactgg ttctaagcct tttatcattc ttactgggct gggccagata
     6061 attcttgtga ataatagatt aattgaggat tgagaggact ggcgagtaag tctgttacag
     6121 taaccatatt gtagccctca cctgttaaat attgcaatac agactcgagg ctatcaactg
     6181 ttgactgatg aatatcatgc attaggataa tacttcctgg acaagtctgt tcttttattt
     6241 ctttcaaaat ggcttgggga ttgcgactct tccaatcttt agaatcgacc gaccaataaa
     6301 tcgatggaag tcctatctga ttgacaacag cctggttaac cgaaccataa ggagggcgaa
     6361 ccattgttgg tacaatacct gtagcttcag taatagctgc ctgtgtatct tgaatttctc
     6421 tctgtacttg ctccccagaa atagtgacta gattgggatg attccacgta tggttggcga
     6481 tgacgtgccc ttctgctacc attctacgga gaatagcttc attcccagct acagccttac
     6541 caacaacaaa gaaagttgct ttggcattat attttttcag taaatctaaa actaccggtg
     6601 ttgtgttcgg atttggtcca tcatcaaagg ttagagcgac ctgtctcaaa tgtttcttat
     6661 ccacaacttg tgcagccata tactcatcat agccaacctt atcagcatct actagataat
     6721 cactcttcac tactgggtac aaatctgaaa ttggtagaac caactggttg atgccgtaac
     6781 catctggtaa ttgtaaggtt aattggctgt ctccataact aaaggaaata gcatttaagt
     6841 ctagtgtttc aaattttttg acaatcgctt ctacatcagt ctctttcatt ccttgagcaa
     6901 gtagggcttc tcttagatga ccaacaataa tacttgctgt agaggataaa ttaggtaata
     6961 aatcttccag ggtaaacaat ttattgtctt gcgtcaacaa cacacgctca gacgggagtt
     7021 tatcctgctt tttaatttgc aagttgtcta ctttatactg ctccgcttga atttcacgag
     7081 ctgttacatt tttaaaattt gtttttccct ctattgatga aacaaagacc aggttttgaa
     7141 tttttcctgc tggtttttta tgaccaaagc gtctttgaac ataggaaatc attcgacttt
     7201 ctacaggtcc taagacatga cctgcatcat ctgtaggtaa ggcagccaca acatgggtcg
     7261 tatcaatatt tccctcttga attttgccct tgcctttagc gaggatggtt tgttgttttt
     7321 cctcgataaa ctgactaacc tgtctttctt gaagtcctgc aaataaccat acagccaaac
     7381 ttaccattat gccgagcaag gcgatgttga ttcccaacca aaaactaact tttttcatat
     7441 ccagcctccc attcaaaaca tatataaact atgctaaatc atttaaaggc tcttgtcaag
     7501 acagttctat aaaaactcat aaaaagat
//
LOCUS       DASGBY010000094         7485 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.094, whole genome shotgun sequence.
ACCESSION   DASGBY010000094 DASGBY010000000
VERSION     DASGBY010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7485
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.094"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            90..803
                     /gene="treR"
                     /locus_tag="U1396_001507"
     CDS             90..803
                     /gene="treR"
                     /locus_tag="U1396_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HEM5342691.1"
                     /translation="MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVR
                     KALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLTSYQELTNVLQLSTKTDVVSLDM
                     ITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
                     EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTES
                     KHKIDKFRFVDFARRKHSL"
     gene            861..1172
                     /locus_tag="U1396_001508"
     CDS             861..1172
                     /locus_tag="U1396_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342692.1"
                     /translation="MANLNRYKFTFGEKQLTLTTEHDNLFMEEIERIAQEKYQAIKEK
                     MPTADPETLALLLAINALSVQLTREMAFEQKEQELASVKEKVLKKNVTLIDLDELEDK
                     V"
     gene            1169..1717
                     /locus_tag="U1396_001509"
     CDS             1169..1717
                     /locus_tag="U1396_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM5342693.1"
                     /translation="MISLAIILILAWSFYIGYSRGLVLQAFYSMGSIIALVVATATYK
                     KLASFLYLWVPFANATQGSSNYYFDEKYLFDLDMVFYAGLAFLLIYVLVYAIVRFIGI
                     FVHLLEAFNPDTKTTNLISGALAVLVTFISLQIVMVLLSTIPLAMIQDKLHSSFLANI
                     MIQYTPFTSSFLKSLWLSNIAG"
     gene            2268..4601
                     /locus_tag="U1396_001510"
     CDS             2268..4601
                     /locus_tag="U1396_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEM5342694.1"
                     /translation="MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVQRIQ
                     QAFDELTDIAQIFVENPYFSLSATSDIGPAMRRLELDTDLNIAELLAVKKVLEVSKSL
                     LDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
                     AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTV
                     YIEPRAVVTLNEEISHLRAEERHELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRA
                     KHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQLTAIVITGPNTGGK
                     TIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHT
                     VQILAEADQDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYG
                     IETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAFEIARRLGLSDIIIQSAQFWTDTD
                     SDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENELNKARL
                     EAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAK
                     IQREAKVGDDIIVTAYGQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQP
                     KKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFIDQALLNNLAQVDIVHGIGTG
                     VIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK"
     gene            4767..5159
                     /locus_tag="U1396_001511"
     CDS             4767..5159
                     /locus_tag="U1396_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5342695.1"
                     /translation="MKKVMKVIIGILLVIGIGIGGIKLMQKIEHDQMVEIVKSEEVRE
                     IVEEQLKYLDNEALSEDGLIKTYEIDDSSIIHSPMGGISFNVFLNSDRKLRVVFELEK
                     DSNTGKIEYSGGGYSSEVKKLVGEINND"
     gene            5152..5337
                     /locus_tag="U1396_001512"
                     /pseudo
     CDS             5152..5337
                     /locus_tag="U1396_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637384.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
     gene            5441..5818
                     /locus_tag="U1396_001513"
     CDS             5441..5818
                     /locus_tag="U1396_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5342696.1"
                     /translation="MKKVMKVIIGILLVIGIGIGGFVYMQHKEHEKMVAIATSEEARA
                     VYEKHMKANDPKALTADGIIKTYEIDTETLEYNPMGGMIVRVYVNGDEDFGFHFNLLQ
                     NEDGKFKSGSYVIKSKLADLLGK"
     gene            5865..6122
                     /locus_tag="U1396_001514"
     CDS             5865..6122
                     /locus_tag="U1396_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342697.1"
                     /translation="MTEYNNLGKGDAVITQYDDIVGRVTLDFDNENGNGEQVYAVVKD
                     PNLPEDQVTEVMVLFRGSTGSNEVLTKPADVWNDWGESILS"
     gene            6217..6606
                     /locus_tag="U1396_001515"
     CDS             6217..6606
                     /locus_tag="U1396_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5342698.1"
                     /translation="MKIVVKILVGILIAIAIGIGGFKLMQKIEHDQMVEIVKGEEVRK
                     MVEERLISYDAKALTEEGIIRSYSIDSASIRRNPMGGINFSVYLNNDDTLYINYRIEK
                     IRDDIVKLVGGGKSSDLTRLLGEEANE"
     gene            6599..>7485
                     /locus_tag="U1396_001516"
     CDS             6599..>7485
                     /locus_tag="U1396_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM5342699.1"
                     /translation="MNNSKTNRDLTDFDRQQVASEEYTPYLKGNEVVITNFFEEELTI
                     GTVRKVLKDATGLDGYVVEEPDGNVIVLFQGSKGPGKEGAAADWMDNDLPMTHNIISN
                     KSEVTPQLQSASRILNQVLKDYPNAQITVYGHSLGSMNAQYALAAVSDIDRIAGAYIY
                     NGPNVYPALTEAGKARVNALKYRIHNYIDQKDFVPIGYSGKDAPGYKSTAGTSEGAIG
                     IVYRVDSKTNLNPIDQHVWGGYQWNADGSLKVKEGSSKLEQHYSNALHHVSSEMYHYA
                     TLKATLSRGGFSSRETIYL"
BASE COUNT         2309 a         1336 c         1748 g         2092 t
ORIGIN      
        1 tttttgctta gtttttttaa ttttgaaatg aattttgtta taatgttgat agttgtatgt
       61 tatttgacag atgaatttgc gaggaaatga tgaaaaaata ccaagaaatt tataatgact
      121 taaaagaaaa aatacggaca aatgtttatc cggcagaaag ctccctaccg acagaacagc
      181 agcttcagga aatctatggt gttagtcgtg atacggttcg taaggcgttg gcgattttga
      241 ctgagggagg tttgattcaa aaagtgcaag ggcgtggttc aatggtcctt aagcaagaaa
      301 ttctcaattt cccagtttca ggtttaactt cctatcagga attaacaaat gttctccagc
      361 tttctaccaa gacagatgtt gtcagcttag atatgattac cgttaatagt agcctttcgc
      421 acttgacagg ctttgagccg tatagcaagg tgtggaaagt tgtccgtaca cgttcaattg
      481 acggtaaggt ctccgttgtg gatacagatt atcttgctgt cgatgtcgtg ccagagttga
      541 caactgctat tgctgaaaaa tccatctacg aatacctaga aaataagtta ggccttgata
      601 ttgcttatgc acaaaaagag attacggtag agccgaccaa tcgagaagag cgtgagctaa
      661 tgcaatcgaa ggatgattat ttggtcttga ttaaatctcg tgtctatctc ggtgataccc
      721 aacaattcca atatacagaa agcaagcata aaattgataa attccgcttt gtagattttg
      781 ctcgtagaaa gcattcttta taggagagat tagccaaatc aagtttttta cgctataata
      841 gatagaagaa gaggtaagat atggcaaact taaatcgata taaatttaca tttggcgaga
      901 agcaattaac tttgacaact gagcatgata atttattcat ggaagagatt gagcgtattg
      961 cacaggaaaa ataccaagcc atcaaagaaa agatgccgac ggcggaccct gaaaccctcg
     1021 cgcttttgtt ggcaatcaat gctctatccg ttcaactaac gcgcgagatg gcatttgaac
     1081 aaaaggaaca agaacttgca agcgtcaaag aaaaggtctt gaaaaagaat gtgaccttga
     1141 ttgacttaga tgagcttgag gacaaggtat gatttcatta gcaattattc tcattttggc
     1201 atggagtttc tacattggct acagccgtgg tctagttcta caggcgtttt atagcatggg
     1261 aagtattatt gctctggtgg ttgcaacggc tacttataaa aaattggcat ccttccttta
     1321 tctctgggtg ccatttgcca atgctactca ggggagctcc aactattatt ttgatgagaa
     1381 atatctcttt gacctagata tggtatttta tgcgggattg gcctttcttt tgatatacgt
     1441 cttggtttat gctattgtac gtttcatagg aatatttgtc catctattag aggcttttaa
     1501 tcctgataca aaaacgacca atctcataag cggcgccttg gctgtcttgg tgacttttat
     1561 ttctcttcag attgtcatgg tcttgctatc aactattccg ttagcgatga ttcaagataa
     1621 attgcacagt agttttcttg ccaacatcat gattcagtac acaccattca ctagtagctt
     1681 tttaaaatct ctctggttga gtaatatagc agggtaaggg agaccttatc ctttttatcg
     1741 tcatttatga tactcttcga aaatcaaaat cagacattgt tgacttgatt tgatgagtgg
     1801 gagtgggaaa gaactcgagc agtctaaaag agttcgtcaa caatttttcg ttttaagttg
     1861 ttgagctgaa acagtctatc cccagactgt ttcactccca cccccgcaca gttgattagg
     1921 tcggatttgg agtgtggaac acgaacaaat ctgccaatca accactgcgc tgagatgttg
     1981 acacgaattc tgagaagcga ggatggactt tctgcccagc ctcagcctgt tcccttgaca
     2041 tataaaagga acagagttct atctgcatca gagcgaaacg aactacgttc gcctatttcc
     2101 aacctctaaa ggttcccacg aacccttgga gcaagtctga ttttgatttt cattgagtat
     2161 tagttgactg ttataacttt aatgtaagag attgggaaag actatatttt tatcttttat
     2221 tgttttgata atgagataaa gctaaggaaa agactaagta ggaacatatg aataataaaa
     2281 ttattgaaac ccttgaattt cacaaggtaa gacaaaaaat tgagccctat ctcttgacgg
     2341 aacagggctt tgaagaatta cgacagttgg agcccatggt ggaagtccaa cgtatccaac
     2401 aggccttcga cgagttgaca gacatagcgc agatttttgt ggaaaatccc tatttcagtc
     2461 tgtcagctac tagtgacatt ggtccagcca tgcgtcgttt ggaattggat acagacctca
     2521 atatcgctga attattagct gttaaaaagg tcttggaagt ttctaaatct ctcttggatt
     2581 tttatggaaa tctggaaaat gtcagtctta gccagctgga taaactcttt gagaagattg
     2641 agctttttcc acatttacag ggctccctcc agtccatcaa tgatgctggt tttgtagagg
     2701 attttgcctc agaaaagctg gctcgtatta gaagaaaaat ccgtgaagct gaagatcaag
     2761 ttcgtcaggt catgcaggat attttgaaga ccaagggcga catgctgtcc gatagtattt
     2821 tggcaagccg taatggacgc aatgtccttc ctgttaaaaa tacctatcgc aataagattg
     2881 cgggtgtagt ccatgatatc tccgcttctg gctcgacggt ttatattgag ccgcgggcag
     2941 tggtgacctt gaacgaagaa atcagtcacc tacgtgcaga agaacgccat gagctcaacc
     3001 gtatcctgca ggaattatcg gatatgctcc gtccgcatag tggtgtgatc cgtaacaatg
     3061 cctggcttat cgggcatatt gatttcgtcc gtgctaagca tctctttgca cgtgaacatc
     3121 aagcagttgt acccaaacta tctgagaagc aggatattgc tcttctcaac gttcgacatc
     3181 cgctcattgc taagcctgta ccaaatgacc tttatttcgg tagtcagttg acggctatcg
     3241 tgataacagg tcccaacaca ggtggtaaga ccatcatgct taagaccttg ggattgaccc
     3301 atctgatggc ccagtctggt ttgcctatct tggctgacaa gggcagtcgg gtagctatct
     3361 tcaaagaaat ttttgcggac attggagacg aacagtccat cgagcagagt ttatcgacct
     3421 tctccagtca catgacccac acggtacaga ttttggcgga ggcggatcaa gattccctca
     3481 ttctatttga tgagttggga gctgggacag atccgcagga gggtgcgtcc ttggcaatgg
     3541 ctattttgga tgaccttcgt ctgcggggga tcaagaccat ggcgaccacc cactaccctg
     3601 agcttaaggc ctacgggata gaaacctctg gtattgaaaa tgccagcatg gagtttgata
     3661 ccaatagcct gcgtccgacc tataagttta tgcagggtgt tcctggtcgc tccaatgcct
     3721 ttgaaattgc tcgccgtctt ggtctatctg atattattat ccagtcagcc caattttgga
     3781 cggatacaga tagcgatgtg aaccgcatta tcgagaaatt ggaaagtcag acggttgaaa
     3841 gtcgtcagcg tctggataag attcgtgatg tggagcaaga aaattacaag atgaaccgag
     3901 ccctccgcaa gctctatgac gagctcaatc gtgagaggga aaatgagctc aacaaggcac
     3961 gcttggaagc caaggaaatt gtagatatgg cattggcaga aagcgaggat attctcaaaa
     4021 atctccatgc tgcagctagt cttaagcccc accagattat cgaagccaag gcagagctga
     4081 aaaagttggc gcctgaagtg gtggatctgt ctaaaaacaa ggttctgaag aaagctaaaa
     4141 ttcagaggga agccaaggtg ggcgatgaca ttatcgttac agcttatgga caacgcggga
     4201 ccttgaccaa tcagctcaag gacgggcgtt gggaagctca ggttggcttg attaagatga
     4261 ccttggccaa agatgagttt gagttagtca aggcggagaa ggcagagcag cctaagaaac
     4321 gccaggttca cacagtcaaa cgtgccaatg tacgaggacc aaaagcccgc ttagatctcc
     4381 gtggcaaacg ctacgaagag gctatgatgg agctggatga atttatcgat caggcccttc
     4441 tcaataacct agcccaagtc gatattgtcc acggtatagg tacaggtgtc atccgagaag
     4501 gggtgaccaa gtacctacgc cgaaacaagc aggtcaagga gttcggctat gccccacaaa
     4561 atgcaggtgg atcaggctgt actattgtga cgtttaaata aggaattagc aaggatagat
     4621 tcagtctgtt cttgctttta tatttctgtt atacagggaa taggataggt caaaatacag
     4681 ttcaagtact tactaggtta tgctatacta tacttatgag gtaagaaata ctcttacttg
     4741 ataggatttc ataaaggagg tctaggatga aaaaagtaat gaaagttatt atcggaattt
     4801 tgttagtaat cgggattgga ataggaggaa ttaagctgat gcaaaaaatt gagcacgacc
     4861 agatggtgga gattgtgaag agtgaggaag tgagggagat tgtagaagaa caacttaaat
     4921 atctagataa tgaagctctt tcagaggatg ggctgataaa aacatatgaa atcgatgatt
     4981 cttctatcat tcatagtccg atgggaggga taagttttaa tgttttcttg aattcagata
     5041 gaaagttaag agtggtgttc gaattagaaa aggattctaa tacaggaaaa attgaatact
     5101 ccgggggagg gtattcttct gaagtgaaaa aattagttgg agaaataaac aatgactgaa
     5161 aagtatactg atcgtgatcg acagaaaatt gccaacaaag agtattcagc ttacaaattt
     5221 ggagatgagg taaatatcgg gaccctagaa caccctagat acatcggcac agtccgtcag
     5281 gtactcaaag atgcaacagg tttggatggt tatgttgttg aagagcctga cggcaacgag
     5341 tgttgtgacg gtgacggtaa cacagtttca gctgcatcta tgttatacta tgaggtaaga
     5401 aagcatctta cttgatagga tttcataaag gaggtctagg atgaaaaaag taatgaaagt
     5461 tattatcgga attttgttag taatcgggat tggaatagga ggatttgtat atatgcaaca
     5521 caaggaacat gagaaaatgg tcgctatcgc tactagcgag gaggctagag ctgtttacga
     5581 aaaacacatg aaagcgaatg acccaaaagc attaacggct gatggaatta taaaaactta
     5641 tgaaattgac actgaaacac tagagtataa tcccatggga ggaatgattg taagagttta
     5701 tgtaaatgga gatgaagact ttggctttca ttttaacctt ttacaaaatg aagatggaaa
     5761 gtttaagtct ggaagttatg ttatcaaatc aaaattggca gatttattag ggaagtagtt
     5821 catggtaaaa aaaatatgtt aatgaagata atcttcagat tgcaatgacg gaatacaata
     5881 atttaggtaa gggagatgct gtaattacac aatatgatga catagtaggt cgtgtcaccc
     5941 tcgacttcga caatgagaat ggcaatggag aacaggttta tgctgttgtg aaagatccaa
     6001 acctgcccga agaccaggtt acggaagtaa tggtactctt tcgaggctcg acaggatcaa
     6061 atgaagtgtt gacaaaacct gcagatgtgt ggaatgactg gggtgaatcg atactctcat
     6121 agatttgcgc gtctttatat ataaacatcg catttatgct atactaggag gtaagaaatg
     6181 ctcttacttg ataggatttc ataaaggagg tttggaatga aaatagttgt taaaatactt
     6241 gttggcatct taattgccat cgcaatagga ataggaggat ttaagctgat gcaaaaaatt
     6301 gagcacgacc agatggtaga gattgtgaag ggtgaggaag tgaggaaaat ggttgaagag
     6361 aggttaattt cttatgatgc caaagcgtta accgaagaag gaataataag gtcctactcc
     6421 attgatagtg cttctattcg tcgcaatcca atgggaggga taaatttttc cgtatatttg
     6481 aataatgatg atactctcta tataaattat aggatcgaaa aaataaggga tgatattgtt
     6541 aaactggtgg gaggtggaaa gtcatccgat ttaactaggt tattaggtga agaggcaaat
     6601 gaataattca aaaacaaata gagatttaac tgattttgat agacagcagg tggcatctga
     6661 agaatatact ccatatttaa aaggcaatga agttgtaatt acaaattttt ttgaagagga
     6721 actaaccatc ggcacagtcc gtaaggtact caaagatgca acaggtttgg acggttatgt
     6781 tgttgaagag cctgacggca atgtgatagt cttgttccaa ggttctaaag gtccagggaa
     6841 ggaaggcgct gcagcggatt ggatggataa tgatttgccg atgacgcaca atattatatc
     6901 taataagtca gaagtgacgc cccaacttca gtctgcttcc agaattctga accaggttct
     6961 gaaggactac cctaatgctc aaattacagt ctacggtcac tcgttaggct caatgaatgc
     7021 tcaatatgct ctggccgctg tttcagatat tgaccgcatt gctggggctt atatctataa
     7081 cggcccaaat gtttatcctg ctttgacgga agcaggaaaa gccagagtga atgctctgaa
     7141 ataccgtatt cataattaca ttgatcaaaa ggatttcgtt cctattggct attcagggaa
     7201 agatgctccc ggctataaat caactgcagg aacgagtgag ggagcaatcg gcatagtcta
     7261 tcgtgtggac agcaagacta atctcaatcc tattgatcaa cacgtgtggg gtggttatca
     7321 atggaacgcc gacggcagcc taaaagtaaa ggaaggttct tcaaaactag aacaacatta
     7381 ttccaatgct ctccaccatg tctcgtcgga aatgtaccac tatgctactt taaaagcaac
     7441 cctatcccgt ggtggcttca gttcgcgtga aaccatctat ctgga
//
LOCUS       DASGBY010000095         7306 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.095, whole genome shotgun sequence.
ACCESSION   DASGBY010000095 DASGBY010000000
VERSION     DASGBY010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7306
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.095"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(10..1287)
                     /locus_tag="U1396_001517"
     CDS             complement(10..1287)
                     /locus_tag="U1396_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5342700.1"
                     /translation="MNKQTYKEILTIAFPAMGENLLQMLMGVVDSYLVASIGIVALSG
                     VSLANNILAVYQAVFIALAAAVSSRLAQALGEGGSEGIGGTASESVKFTVFIGLLLGI
                     FSVLAGPIVLASLGAESEVVQAGGLYLILVGGGAPFWGLMASLSAILRTLGEPRFPMY
                     ISLLSNVLNALFSAFAVFVLHAGVAGVAIGTVLSRLIGCSLLWSRLPISLKPWTWSFD
                     KELLRLALPATGERLMMRVGDVVVVALITSLGTATVAGNAIGETLTQFNYMPALGIAT
                     ATIILTAKHRQDKAMVRHIFRTSFGLSLLFMFLVAGVTYFAGPFLISLYTKDIQAVQA
                     SQTVLFYAMLGVPFTAGTLIMTALWQGLGNARLPFYATTIGMWLVRIGIAYLLITFFK
                     IGLSAIWIATILDNAFRAGVLFFQYRYSKQESI"
     gene            complement(1293..2720)
                     /locus_tag="U1396_001518"
     CDS             complement(1293..2720)
                     /locus_tag="U1396_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342701.1"
                     /translation="MLSRFSDSRPAVTVKNVALTYSGADKPALQIEDLTIPEGQCVVL
                     CGQSGSGKSSFLKMLNGLTPEYYPAQLSGQIFLGDLDLQKSSLEEISRHIASVFQHPS
                     TQFFHSQVLQELVFPCENQGLSREEIENRLAWVMELFGLASLSRRTISSLSGGQQQRL
                     ALAVTAMQGTDVLVLDEPTANLDQEGIAIVEDILKTLKSQGKTIIIAEHRLSYLSQLA
                     DRYLYFQDGQVVTDYLADEFLSRTEECRQDMGLRCYDSEPYGRAIAELADQFVNDKEG
                     LLVENLSVSQKENTLYEIEKLCLASGQVVGLVGANGSGKTSLARYLVGLAEDKKSRIS
                     WQGQTLSSRQRLEKTAFVMQDVRLQLFAESVERELTLGRKNRAVDEHLVARFGLSDLL
                     ERHPVSLSGGEQQRVMIVASLLADKEIFIFDEPTSGLDLRRMQQVASALVDLKMKNKL
                     VLLISHDEELLNLVCDKIVDIKQLK"
     gene            complement(2684..3343)
                     /locus_tag="U1396_001519"
     CDS             complement(2684..3343)
                     /locus_tag="U1396_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5342702.1"
                     /translation="MKLDARTKIILVIFTSFTYGMRLTILENAVLVLGLSLLFWFSGK
                     RKMAIMSPIAYSIFCLLSYITFLPAWLTHLLLVLTYTWPPLLAGHLLLMTTSGYELIH
                     GLRKWHLPEVFLLTLGVMFRFLPAIKQDARTIFASLKVRGIFLRKRDVVCKPLQYMEV
                     FLVPLMMSLLRTAQELTVASLTKGLAVSTKSPAYIRSSWTVLDWSLCLCCLGFLILVR
                     L"
     gene            complement(3340..3933)
                     /locus_tag="U1396_001520"
     CDS             complement(3340..3933)
                     /locus_tag="U1396_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MptD family putative ECF transporter S
                     component"
                     /protein_id="HEM5342703.1"
                     /translation="MKKLQVKDLMVTGAFAALYFVCVGLGTLLSLVFDRSGNMMYAPA
                     GAALLAGPVYMLLIAKVGKPGSISLVGAVMACFFFLSGYMTAAFLPSLTFGFLAEMVA
                     KSGHYKQKWTNLLSYIIFSFGNLGPIILMWFMRDAYEANLLARGKSAEYIARVMLDFT
                     PENVLWLSTTIILTALISGLFGQYMLQRYFKQSGYLS"
     gene            complement(3934..5595)
                     /locus_tag="U1396_001521"
     CDS             complement(3934..5595)
                     /locus_tag="U1396_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342704.1"
                     /translation="MDKKEMLTRVLIPRLLQSMKHLLPRIAVAVCFAVLGQVVTIAIP
                     VTLVYLAFAALAGNPAPLWTLGILILLALLRGAFRYGEHYFGHYVAFHTLAAYRRLIF
                     AKLRALAPGKLDRQDSGSLLKMIGEDIEALEVFFAHTIAPICTGILVAFGLTVYFGLS
                     SWGLALLALVTYALLAIAIPNRFAQQLEPLLKEQNASRKGYVSYFIESLKSMKDLMQF
                     QQTDARFAKLTQKSQEVNGQERKVAQTNFMQYAVSFLVVGLSIMCFAWLTFDLVGSQS
                     LDLATGVALLVSFTSSFAPFLELSRLPLGFKRAMNAGRNIYALLDEKEAERTGELVEV
                     RVTDIAIEQLDFDYDDRETGLYRNLSVQFEQGGIIGLVGESGAGKSTLMKLIMRWYDW
                     QQGQIRLSGLDSRQVDKAHLQGAFAYVPQVPQIFRQTIRENLLLGRTDVSDETIMDLA
                     EKCHMKERILAAPQGLDTLVEASDFSAGEGQRLELMRALLKNADCYIFDEPTSNLDSL
                     NEARFIQLVKEHCQGMVFLISHRSSTMACADTIFYLEDGQLVKEK"
     gene            complement(5588..7267)
                     /locus_tag="U1396_001522"
                     /pseudo
     CDS             complement(5588..7267)
                     /locus_tag="U1396_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921862.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
BASE COUNT         2248 a         1879 c         1452 g         1727 t
ORIGIN      
        1 agccttatct taaattgatt cttgttttga atacctatac tgaaaaaata gcacccctgc
       61 tcggaaggca ttatctaaaa tcgttgcaat ccaaatggct gacaaaccga ttttaaaaaa
      121 tgttataagt aaataagcta tgccaatccg cactagccac ataccgatag ttgtggcata
      181 aaagggtaat ctagcatttc ccaaaccttg ccaaagagct gtcataataa gagtgcctgc
      241 tgtaaaggga actcccaaca tggcataaaa taatactgtt tgactagctt gtaccgcttg
      301 aatatcctta gtataaagac tgattaggaa aggccccgca aaataagtca caccagccac
      361 caaaaacata aacagtaaag aaaggccaaa gcttgttcga aaaatatgtc gaaccatagc
      421 cttatcctgt ctgtgttttg ctgtaaggat gattgtagcg gtagcaatcc ctaaagccgg
      481 catatagtta aactgcgtca gggtttctcc aatcgcattt ccagctaccg tcgctgttcc
      541 taagctggta atcaacgcca cgactaccac atctcccacc cgcatcatca accgttcacc
      601 agttgctggc agagcaagtc taagcagttc tttatcaaag gaccaggtcc atggttttaa
      661 agaaattggt aagcgagacc aaagcaggct acaaccaatc aaccgcgata agaccgtgcc
      721 aatcgcaact ccagctacac ctgcatgaag cacaaagact gcaaatgctg aaaatagtgc
      781 atttagaacg tttgagagca ggctgatata cataggaaaa cgtggttccc ccaaggttcg
      841 taagattgca ctcaaacttg ccatgagtcc ccaaaaaggt gctcccccac caaccaatat
      901 caaataaaga cctccagcct gtaccacttc tgactctgcc cccaagctag caagtactat
      961 tggacctgcc agaactgaaa aaattcctaa aaggagaccg ataaaaactg taaacttgac
     1021 actttcacta gcagttcctc caatgccttc tgaaccccct tcacccaaag cctgagccaa
     1081 acgagaagac accgctgctg ctagggcaat aaaaaccgcc tgatagacgg ctaaaatatt
     1141 attagcaagg gaaactccag acaaggctac gatgccaata ctggctacta gataagagtc
     1201 tactaccccc attaacatct ggagaaggtt ttcccccatg gctggaaagg caatggttaa
     1261 aatttcttta taggtttgtt tgttcataat ctctatttca actgtttaat atctactatt
     1321 ttatcacaaa ccagattcaa tagctcttca tcgtgagaaa ttaacaaaac caacttattc
     1381 ttcattttta agtctactaa agcggaagca acttgctgca ttcgtctcaa atccaaaccg
     1441 ctcgtcggtt catcaaaaat gaaaatttcc ttatctgcca gtaagctggc cactatcatc
     1501 acacgctgtt gttcaccgcc cgataaactg accggatgtc tctccaacaa atccgataga
     1561 ccaaaacgag ctaccaaatg ttcatcgaca gctctatttt tccttccaag agtaagttct
     1621 cgctcaacac tttccgcaaa tagttggagt cgaacatcct gcataacaaa ggctgttttt
     1681 tccaatctct ggcgactaga taaggtttga ccttgccaag aaatcctact cttcttatct
     1741 tccgctaaac cgaccagata acgagcaagg cttgtttttc cagaaccatt cgctccaacc
     1801 agacccacca cctgtcctga tgccaagcag agtttttcaa tctcgtagag agtattctct
     1861 ttctgactta ccgataaatt ttcaacaagt aaaccctctt tatcattaac aaactggtcc
     1921 gccagctccg ctattgcccg cccataaggc tccgagtcat aacaacgcag tcccatatcc
     1981 tgacggcatt cttctgtccg acttaaaaac tcatctgcta gataatccgt caccacttgc
     2041 ccatcttgaa aatataaata gcgatctgcc aattgactga gataagacag tctatgctcg
     2101 gcaataataa tggtcttacc ttggcttttt aaagttttca agatgtcctc tacaatcgca
     2161 atcccttcct gatctaggtt ggcagtcggc tcatctaaaa ccaagacatc tgtcccttgc
     2221 atggctgtaa cggccaaggc tagacgttgt tgctgaccac ctgatagact ggaaatcgtt
     2281 cgccggctaa gagaagccaa accaaataat tccataaccc aagctaggcg attctcgatt
     2341 tcttctcttg acaaaccctg attttcacaa gggaaaacca attcctgcaa gacctgacta
     2401 tgaaaaaatt gagtagacgg atgctgaaag actgaagcaa tgtgccggga tatttcttcc
     2461 agactagatt tttgtaaatc caagtcccct aagaaaattt gtcccgaaag ctgagcagga
     2521 taatattctg gcgtcaaacc atttaacatc ttgagaaaac tagacttccc agagccactc
     2581 tgcccacata aaacaacaca ctggccttct ggaatggtca aatcctctat ctgcaaggct
     2641 ggtttatctg ctcctgaata agttaatgct acatttttta ccgtcacagc cggacgagaa
     2701 tcagaaaacc gagacaacat aaacaaagac tccaatctag cacggtccaa gacgaccgaa
     2761 tatatgcagg tgattttgta gatacagcca aaccttttgt cagactggct actgtcagtt
     2821 cctgagctgt tcgcaagaga gacatcatca agggaactaa gaaaacctcc atgtactgga
     2881 gtggcttaca aaccacatct ctcttccgta aaaaaattcc tctaaccttc aaagaggcaa
     2941 aaatcgtacg agcatcctgt ttaatggcag gtaggaaacg aaacattact cccaacgtca
     3001 aaagaaatac ctctggcagg tgccatttcc gcaagccatg aatgagttcg taaccacttg
     3061 tcgtcatcag taatagatgt cctgccaaaa gcggaggcca tgtataggtc aatacaagca
     3121 acaaatgcgt cagccatgct ggtaaaaatg taatatagga caacagacaa aaaatagaat
     3181 aggctatcgg actcattata gccattttcc gctttccaga aaaccagaaa agcaggctaa
     3241 ggcctaagac cagcactgca ttttctaata ttgtaagcct catcccatag gtaaaactag
     3301 tgaagatgac gagaataatt tttgtacgag catctaattt catgaaagat aacctgattg
     3361 tttaaaatag cgctgaagca tatattgacc aaacaaacca ctgataagag ctgttaagat
     3421 aatggtcgtt gacaaccata gcacattctc tggagtgaaa tcaagcatga cacgagcgat
     3481 gtattctgct gattttccac gtgccaaaag attggcctca taggcatctc gcatgaacca
     3541 cataagaata ataggtccca agtttccaaa agagaaaatg atatagctaa gaagattggt
     3601 ccatttttgt ttatagtgac ctgacttcgc taccatttct gccaaaaaac caaaggtcaa
     3661 acttgggaga aaggccgctg tcatatagcc tgacaggaaa aagaaacagg ccattactgc
     3721 tccaaccaga ctaattgaac ccggcttccc aaccttggca atcaagagca tatagactgg
     3781 accagctaag agagctgctc cagctggtgc atacatcata ttacccgaac gatcaaaaac
     3841 caagctcaac aaggttccta gaccaacaca aacaaagtag agggcagcaa aagcccctgt
     3901 taccatcaga tcttttactt gtaatttctt catttatttt tcctttacta attgcccgtc
     3961 ttccaagtag aaaatggtat ccgcacaagc catggtcgag cttctatgag aaatcaagaa
     4021 gaccatgccc tgacagtgtt ccttaaccag ttggataaag cgggcttcat tgagcgagtc
     4081 taggttacta gttggctcat caaagatata gcaatccgca tttttgagca gggcccgcat
     4141 gagttccaaa cgttgccctt ctcctgctga aaaatcactg gcctccacaa gcgtatccaa
     4201 gccctgcggt gctgccaaaa tccgttcttt catgtggcat ttttctgcca aatccatgat
     4261 ggtttcatcc gacacatccg tccgtcccaa gaggagattt tcacgaatgg tctggcggaa
     4321 gatttgtggc acctgtggta cataggcaaa agccccctgc aaatgagcct tatctacctg
     4381 ccgactatcc aagccagaca ggcggatttg gccttgctgc caatcatacc accgcataat
     4441 tagtttcatc aaggtggatt ttcctgcacc ggactcaccg accaagccaa taataccacc
     4501 ctgttcaaac tggacagaca ggttccgata gagccctgtt tctcggtcat cgtagtcgaa
     4561 gtccagttgt tcgatagcaa tgtccgtcac tctgacctca acaagctcac ctgttcgctc
     4621 tgcttctttt tcatccaaaa gagcatagat attgcgacca gcattcatag cccgcttgaa
     4681 accaagaggc agacggctga gctccaagaa gggagcaaag gagctagtga aagaaaccag
     4741 cagggctact cctgttgcta agtccaaact ctgactaccc accaagtcga aggtcagcca
     4801 ggcaaagcac ataatagata gtcctaccac taaaaaggaa acagcatact gcatgaagtt
     4861 ggtctgggca acctttctct cctgaccatt gacctcttgg cttttctgtg tcagcttggc
     4921 aaagcgagca tctgtctgct ggaactgcat caggtccttc atgctcttga gactttcaat
     4981 aaagtaggac acatagccct tacggctggc attttgctcc ttgagcaagg gctctaactg
     5041 ctgagcaaaa cgatttggaa tggcaatcgc caacagagca taggtcacca gagccagcaa
     5101 agccaaaccc cagctggata gaccaaaata gactgtcaaa ccaaaagcca ccaaaatccc
     5161 tgtacaaatt ggggcaatag tatgggcaaa gaaaacctcc aaggcctcaa tgtcctcccc
     5221 aatcatctta agcaggctac cgctgtcctg ccgatccaat ttcccaggag ccagggcccg
     5281 cagttttgca aaaatcaaac gacggtaagc cgccagcgta tgaaaggcca cataatgacc
     5341 aaagtaatgc tcaccatagc ggaaggcacc acgtaaaaga gctaggagaa tgaggattcc
     5401 caaggtccat agcggagctg gattgccagc aagggctgca aaagccagat agaccagcgt
     5461 tactggaata gcaatggtca ccacctgtcc caagaccgca aagcaaaccg ccaccgcaat
     5521 ccgtggcaag aggtgcttca tggactgcaa gagtctcgga atcagcaccc gtgtcagcat
     5581 ttctttctta tccataaacg gcttcctcca attctctttg ttgatcgacc agctgaccat
     5641 aagccaagct agtctgataa agcgtggcat gattgcctgt cacagctcct tcagcagaca
     5701 ggaagaggat gtcatctgcc tgctccactt gtttcatctt atgtgtaata ataatagcaa
     5761 tcgcatcctt gaccaccaag tcaatgaggt cgtaaatcaa gccttcattg tcttgatcga
     5821 cgctggacgt cacctcgtca aagatataaa gggagcgttt tgccaaaacc gcacgggcac
     5881 agataaccta ctggcgttga ccaggcgaca agaaagcacc gtcgtcacca acaaccgtat
     5941 ccaaaccgtc tggcaaattc ttgacaaact gcaagacccc atgctgatct gcccaagcca
     6001 agatgtcctc cttagaccag tcacaagcca tgcgtaaatt ttcatagatt gactggttga
     6061 gcaaggttga ctggcccgac acatagagga cctgctcatt cagagataac tgactgacac
     6121 ctgaaatctc ctactcaccc aagtaaatcg ctcccttatc cgcccgcaag cgtcccaaga
     6181 gcagctgggc caaggtcgtt ttcccctgcc ctgactcacc tgccaaagca tagactttac
     6241 cagccgtcat ggtcatagaa atatctttta agactggctt ttctccgtag acaaaggcca
     6301 gattttccag tttcaaacta tcaaaaacag gcacatggaa agaatcgatt tcctgctccg
     6361 ctgtcatact gtccaagaaa ccaaaaatgc gatccgccat cttggtattc atcatcacca
     6421 agtgcatacc gtagccctgc tcccgtatgg gtgcaaaaaa ctccgtcgca atgaggacaa
     6481 agaagagcat actaaagagg gacaaattgc ctgctgctag gctattgacc gccacaaaac
     6541 cagacaagcc aatccccaga tacatgaccg aatccatgta gcctaccgct tgcaactgaa
     6601 agctgagtag ctccatggtc gcatcgcgga agtcctcggc ctgctcattg aaggtctttt
     6661 cgtaggtggc atccgcctga taggaataga gggtgttgag ccccttgagg tcgtccagga
     6721 aaagattgcc cacatccata taggaactcc aatagcgatt cataatccgc ttggaccgct
     6781 tctgcatagc gataatggaa atgggaatca gaggcaaagc caagatgaaa ataaccgcac
     6841 ccagcgggaa aaacagaaaa accagcaaaa aaacagttgc acagttgaac tgggtccgca
     6901 gagaagatgc catgtagtag gaatagtagg tatccaggct atcaatcccc tgggaagcga
     6961 tgttaaagac atccgctgct gtcgcttttg acgcaaactg accgtccttg gccaagaggg
     7021 cctcaaagaa ggactgcttg agcgaatccc gtgcaaactg ggagcccaag ccctgcaaac
     7081 gcttggcaat caaggccaca ccatatccaa aggcattgag cccgagcaag atgaggacaa
     7141 actgtactaa atcaacctgc ccgccctcat agtatgtcac aaagccctta gcaatcaggt
     7201 aaaaggaaat aatccgcatc aaaaactgca cccaggatag aaaggctgcc aaataaacca
     7261 gcttcatctt gggtttgatg cgttctttga gtcgcttcaa gagggc
//
LOCUS       DASGBY010000096         7298 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.096, whole genome shotgun sequence.
ACCESSION   DASGBY010000096 DASGBY010000000
VERSION     DASGBY010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7298
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.096"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(99..1439)
                     /locus_tag="U1396_001523"
     CDS             complement(99..1439)
                     /locus_tag="U1396_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEM5342705.1"
                     /translation="MRTSFIQSSHQEACIQAIQELVAFPSVLQEHQADTPFGQAIQDV
                     LEHTLALTEKMGFKTYLDPAGYYGYAEIGQGEELLAILCHLDVVPAGDLSQWQTPPFE
                     AVVEGDYIIGRGVQDDKGPSMAALFAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNR
                     YNQLEEVATMGFAPDSSFPLTYAEKGLLQAKLHGPGHPCLSIEAGTAYNVVPAKASYS
                     GHLLAGVIAELDQLGFDYETKDDQVTVLGISRHAKDAAEGVNAIVRLAKALEHFENHP
                     ALDFIVNAVGEDATGFKLFGDVTDEPSGTLSFNIAGLTISAKKSEIRLDIRIPVTADK
                     EALVSTLQAKAQSCGLTYEEYDYLASLYVPLDSQLVSTLMSVYQDKTGDLTSEPISSG
                     GATFARTMPNCVAFGACFPDTEQTEHQENERMPLEDLYKTMDIYAEAVYRLAAE"
     gene            complement(1558..3060)
                     /locus_tag="U1396_001524"
     CDS             complement(1558..3060)
                     /locus_tag="U1396_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HEM5342706.1"
                     /translation="MSEKVKKGFKLPSSYTILMLIIAFMAVMTWIIPAGQYQVDEAGH
                     LVAGTYEKVAQNPQGIYDVFMAPVRAMLGHGATEAAINVAFFIIMVGAFLGVVNETGA
                     LDVGIASIVKRFKGREKMLIYILMTLFALGGSTYGMGEETMAFFPLLVPVMMAVGFDS
                     ITGVAIILLGSQIGCLASTVNPFATVVASDAAGVSVADGMIWRFVFFVVILAMGVLFV
                     ANYAEKVKNDPTKSLVYKQREADMQHFNVTATQEVNAELSPAQKRVLWVFVLTFVLMI
                     CSFIPWEDLGVTIFTQFNDWLIGLPFIGQVIGSSTAALGTWYFPEGAMLFGIAGIVVG
                     LVYGMSEERLVKSFMFGAADIFSVALICAIARGIQVIMNDGMITATILHMGEEGLQGL
                     SSQVFIILTYLFYLPMSFLIPSSSGLAGASMGIMAPLGEFVNVPASLVITAFQAASGL
                     LNLVAPTSGIVMGALALGRVEIGTWYKFVGKLIVGIMIASIAILVIATFF"
     gene            complement(3402..4349)
                     /gene="arcC"
                     /locus_tag="U1396_001525"
     CDS             complement(3402..4349)
                     /gene="arcC"
                     /locus_tag="U1396_001525"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003025409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEM5342707.1"
                     /translation="MANRKIVVALGGNAILSSDPSAKAQKEALVQTAKHLVKLIKNGD
                     DLIITHGNGPQVGNLLLQNLAADSEKNPAFPLDSLVAMTEGSIGFWLQNALENELHKE
                     GIEKDVASVVTQVIVDKNDPAFENLTKPIGPFYTEEEAKAEAEKTGATFKEDAGRGWR
                     KVVASPKPVGIKEIGTIRTLLNAGEVVVAAGGGGIPVVQEADGTLTGVEAVIDKDFAS
                     QCLAELVDADLFIVLTGVDYVFVNYNKPDQEKLETVTVAELEEYIKQNQFAPGSMLPK
                     VEAAIAFVNNKPQSKAVITSLENLGALIESDSGTIIVKG"
     gene            complement(4467..5480)
                     /gene="argF"
                     /locus_tag="U1396_001526"
     CDS             complement(4467..5480)
                     /gene="argF"
                     /locus_tag="U1396_001526"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM5342708.1"
                     /translation="MTNVFKGRHFLAEKDFTRAELEWLIDFSAHLKDLKKRNIPHRYL
                     EGKNIALLFEKTSTRTRAAFTVASIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMF
                     DGIEFRGFSQKMVEELAEFSGVPVWNGLTDAWHPTQMLADYLTVKENFGKLEGLTLVY
                     CGDGRNNVANSLLVTGAILGVNVHIFSPKELFPEEEVVALAEVFAKESGARVLITDNA
                     DEAVKGADVLYTDVWVSMGEEDKFAERVALLKPYQVNMELVKKAENENLIFLHCLPAF
                     HDTNTVYGKDVAEKFGVEEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGDPFV
                     PRV"
     gene            complement(5499..5939)
                     /locus_tag="U1396_001527"
     CDS             complement(5499..5939)
                     /locus_tag="U1396_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342709.1"
                     /translation="MPSIERTTIGSEEWQRAASIYVRYKVFVLERGIAKEGEFDQNDT
                     EGRVYANLFIGEEPVSTGRFLPVGPGQARLTRIATLPNFRGKGYGKMIISSLEAYARE
                     AGFHQLNIHSELTAKTFYESVGYQATSEVYQEDGEWCQTLTKFI"
     gene            complement(5939..7171)
                     /gene="arcA"
                     /locus_tag="U1396_001528"
     CDS             complement(5939..7171)
                     /gene="arcA"
                     /locus_tag="U1396_001528"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HEM5342710.1"
                     /translation="MMSNHPIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDI
                     PFLEDAQKEHDAFAQALRDEGVEVLYLEKLAAESLVTPEIREQFIDEYLEEANIRGRA
                     TKKAIRKLLLSIEDNQELVEKTMAGIQKAELPEIPAEEKGLTDLVESSYPFAIDPMPN
                     LYFTRDPFATIGNAVSLNHMYSETRNRETLYGKYIFTHHPEYGGKVPLVYNREETTRI
                     EGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFEQHVGFKKVLAFEFANNRKFMHLD
                     TVFTMVDYDKFTIHPEIEGDLRVFSVTYENDTLHIEEEHGDLAELLAVNLGLEKVELI
                     RCGGGDMVAAGREQWNDGSNTLTIAPGVVVVYKRNTITNAILESKGLRLIKIGGSELV
                     RGRGGPRCMSMPFEREDI"
BASE COUNT         2176 a         1686 c         1354 g         2082 t
ORIGIN      
        1 ctatctcatc tttctaatga tattcttcat aagaaaagcc cttagatatt tcactaagag
       61 ctttgaaact gtaatttact attcaatact gataatggct attccgcagc taggcgatag
      121 actgcctcag cataaatatc cattgtttta tataagtctt ccaatggcat gcgttcattt
      181 tcctgatgct ctgtttgttc tgtatctggg aaacatgcac caaaggccac acagtttggc
      241 atagtacgag caaaggtagc cccacctgac gagattggct cgcttgttaa atctcctgtc
      301 ttatcttgat aaacagacat gagcgtagat accagctggc tgtctaatgg cacatacaag
      361 gaagcaaggt agtcgtactc ttcataggtc aagccacatg attgcgcttt ggcttgtaaa
      421 gtagaaacta gggcttcttt atccgcagtg acaggaatac gaatgtccaa gcgaatttct
      481 gatttttttg cgctaatggt tagacctgca atattgaaac tgagtgtccc tgatggttca
      541 tcggtcacat caccaaaaag cttaaatcct gtggcatctt caccaactgc attgacgata
      601 aagtccaagg ctggatgatt ttcgaaatgt tccaaagcct ttgccaaacg aacgatggca
      661 ttgaccccct cagcagcatc cttggcgtgc cgcgaaatac caagaaccgt tacttgatca
      721 tctttggttt cataatcaaa gcctaattga tctaattccg caataactcc ggctaataaa
      781 tgaccggaat agcttgcctt ggcaggtact acgttatagg cagttcccgc ttcgatactc
      841 agacaagggt gacctggacc atgcaatttg gcctgtagta atcctttttc agcataagtc
      901 aaagggaagg aagaatctgg tgcaaagccc atagttgcta cttcttccaa ctgattgtag
      961 cggttcatac accgccataa ggtctcttca tctgttccaa aaatgaaacg aatccgtttg
     1021 ttaaattgga ctcccgcatc aagaagtgct tttactgcaa ataaggccgc catcgaagga
     1081 cctttatcat cctgaacccc gcgtccaata atataatctc cctctaccac agcctcaaaa
     1141 ggcggcgtct gccattgact aagatcacca gcaggtacca catctaagtg gcaaaggatt
     1201 gctaataatt cttccccttg cccaatttca gcatagccat aatagccagc agggtctaaa
     1261 taagttttaa aacccatttt ttccgtcaaa gccaacgtgt gctccagaac atcctgaatc
     1321 gcttgaccaa atggcgtatc tgcctgatgt tcttgcaaaa cagaaggaaa agcaaccagt
     1381 tcttggatgg cttgaataca tgcctcctga tgcgatgact gaataaaact tgttctcatt
     1441 gtgtcccctt tcaacataat aagatatgat atattttcta gcactattct atcataaaag
     1501 gaaaaactga gccaaatttt atctgtattc atgataaaat ctgacccaga atttcgatta
     1561 gaagaatgtc gcaatgacca aaatagctat ggaggcaatc atgatgccta cgattaactt
     1621 acctacaaat ttataccaag taccaatttc aacacgacca agtgccaagg ctcccattac
     1681 aatacctgat gttggagcca ccaagttcaa gagacctgat gcagcttgga aagctgtgat
     1741 aaccaagctc gctggtacat ttacaaactc accaagaggc gccatgatac ccatagaagc
     1801 ccctgcaaga cctgatgaag atggaatcaa gaaggacatt ggtaggtaga agagatatgt
     1861 caaaatgatg aatacttgcg aagacaaacc ttgcaatcct tcttcaccca tgtggagaat
     1921 agtggcagta atcataccat cgttcatgat gacttgaata ccacgcgcga tagcacaaat
     1981 caaagctacg ctgaaaatat cagccgcacc gaacataaag gattttacca aacgttcttc
     2041 actcatacca taaactaaac caactacaat ccctgcgata ccaaagagca ttgctccttc
     2101 tgggaagtac caagtaccaa gagcagctgt tgaagaacca atcacttgac cgatgaatgg
     2161 aagaccaatc aaccaatcat taaattgtgt aaagatagtc acacccaaat cttcccatgg
     2221 aataaagcta caaatcatga gaacaaatgt taatacaaat acccagagaa cacgtttttg
     2281 agctggtgat aattctgcat tcacttcttg agttgctgtt acattaaagt gttgcatgtc
     2341 cgcttcacgt tgtttataaa ccaaggactt agtcggatca tttttcactt tctcagcata
     2401 gttggctaca aagagaaccc ccatcgcgag aatgacaacg aagaagacaa agcgccaaat
     2461 cataccatcc gcaacactta cacctgctgc gtcagaagca acaactgtcg caaatgggtt
     2521 tacagtagaa gccaaacagc cgatttgaga ccctagcaag atgatggcta caccagtaat
     2581 actatcaaaa ccaaccgcca tcataacagg aacaaggagt gggaagaaag ccattgtttc
     2641 ttcacccata ccataggttg agcctcccaa ggcaaacaaa gtcatgagaa tgtaaatcaa
     2701 cattttttca cgacctttga agcgttttac aatagaagca atccctacat caagtgcacc
     2761 tgtttcgtta actacaccaa gaaaggcacc aaccatgatg atgaagaatg ctacgttaat
     2821 cgctgcttca gtcgcaccat gaccaagcat ggcacgaact ggagccataa aaacatcgta
     2881 aatcccttgt ggattttgag caaccttctc ataggtacca gccaccaaat gtccggcttc
     2941 atcaacctga tactgaccag ctggaataat ccatgtcatc actgccataa aggcaataat
     3001 gagcatcaat attgtataag acgaaggcaa tttaaagcct tttttcactt tttcgctcat
     3061 cgcaaaaacc tcctataata ttttaaaagt ttatccccta tttaagggaa attgtatccg
     3121 taataaccgt atcaaatatc cacctatctt caagagatgt ctatctcttc agtctattat
     3181 ctgaaatcat tgcttataga tagatacttg ataggaaatg gatgagaggg gagggagctt
     3241 agaagcccag accttcatgt ttcgattaaa gggaaccctt gtaggactat caacacttcc
     3301 actcccctaa ctccatcaat aaataacccg tctagtttaa aaactatatt tgcatgcaga
     3361 gtacatcaat aaatagaagc ctcaacaata catacagcta cttagccttt gacaatgata
     3421 gtaccgctat cggattcaat caaagcgcct aagttttcta atgaggtaat gactgctttt
     3481 gattgcggct tattgtttac aaaagcaata gctgcttcaa ctttcggtag catggaacct
     3541 ggtgcgaatt gattttgttt gatatattct tccaattcag ctacggtaac tgtttctaat
     3601 ttttcttggt ctggtttgtt gtagttaaca aagacatagt ctacaccggt caagacgata
     3661 aacaagtctg cgtcaaccaa ttctgccaaa cattgagaag caaagtcctt atcgataact
     3721 gcttccacac cggtcagggt gccatctgct tcttggacaa ctggaatacc tccgcctcca
     3781 gcagctacga caacttcacc tgcattgaga agggtacgaa tggtaccaat ttctttgatt
     3841 cctacaggtt ttggcgaagc aacgactttg cgccagccac gaccggcatc ttctttgaag
     3901 gttgcaccag tcttttctgc ttctgctttc gcttcttctt ctgtatagaa tggtccaatc
     3961 ggcttggtca aattttcgaa ggcgggatca ttcttatcta cgataacctg ggtcacaaca
     4021 gatgctacat ctttttcaat gccttccttg tgcaattcat tttccaaggc attttgcaac
     4081 cagaaaccaa tcgaaccttc tgtcatggct accaaactgt ctagtggaaa ggctggattc
     4141 ttttctgaat cagctgccag gttttgaaga agtaagtttc caacctgagg accattacca
     4201 tgtgtgataa taaggtcgtc cccatttttt atcaatttta caaggtgctt ggctgtttgt
     4261 accaaggcct ctttttgtgc tttagccgat gggtcggacg ataaaatggc attgccaccc
     4321 aaggctacta caattttacg atttgccata tctcttgctt tttcctcact ttcgcgaaat
     4381 agtaatcgct tacacatcta tcctcaaaat aagggggctg ggtgccagcc cccggaggtt
     4441 gcgatgcgtt attagatagt taattattac acacgtggaa caaatggatc ccctaaagta
     4501 gccgccatca ctgctttaat agtgtgcata cggttttcag cttggtcgaa gtgacgagca
     4561 tatttgctac ggaatacttc gtctgttact tccatttctt ctacgccgaa tttttcagcg
     4621 acatctttac cataaacagt gtttgtatca tggaaggcag gcaagcagtg caagaagatg
     4681 agattttcat tttctgcttt tttcaccaat tccatattca cttggtatgg tttcaagagg
     4741 gcaacgcgtt ctgcaaattt atcttcttca cccattgata cccaaacgtc agtataaaga
     4801 acatctgcac ctttgactgc ttcgtcagca ttatcagtaa tgagaacacg tgctccactt
     4861 tctttcgcaa aaacttcagc caaggcaact acttcttctt ctgggaagag ttcttttgga
     4921 gagaagatat ggacattgac accaaggata gcacctgtca ccaagagaga gttggcaacg
     4981 ttgttacgac catcaccaca gtaaaccaga gtcaaacctt ccaacttgcc aaagttttct
     5041 ttgacagtca agtagtccgc caacatttga gttgggtgcc atgcatctgt caaaccattc
     5101 catactggca caccagagaa ttctgccaat tcttccacca ttttttgact gaaaccacgg
     5161 aattcaatac cgtcgaacat acgccccaaa actttagcag tatcttctgt agattctttc
     5221 ttaccaagtt ggatatcatt tgcaccaaga tattctggat gggcaccaag gtcaatagat
     5281 gctactgtga aggcagcacg agtacgtgtt gatgtttttt caaacaagag ggcaatattt
     5341 ttaccttcca aataacggtg tggaatattg cgttttttca aatctttcaa atgagctgag
     5401 aaatcaatca accattccaa ttctgcgcgt gtgaaatctt tctctgcaag gaaatgtcta
     5461 cctttaaata cgtttgtcat tgtctcttct cctaatgttt aaataaattt tgtcaatgtc
     5521 tggcaccatt ctccatcttc ttgataaact tcagaagttg cttggtagcc aactgactca
     5581 taaaaagtct ttgcagttaa ctccgaatgt atattcaact gatgaaagcc tgcttcacgt
     5641 gcataagctt ccaaagagct gataatcatt tttccatagc cttttccacg aaaattcggt
     5701 agagtggcta ttcgggttag acgagcttga ccaggaccga caggaagaaa acgtcccgtc
     5761 gaaacaggct cttcaccaat aaagagattg gcgtaaactc ttccttccgt atcattctgg
     5821 tcaaattcac cttcctttgc aataccacgc tcaaggacaa ataccttata gcggacatag
     5881 atagaggctg cgcgttgcca ttcttccgaa ccgattgttg ttcgttctat acttggcatt
     5941 agatgtcttc ccgttcaaac ggcattgaca tacaacgagg tccaccacga ccgcgaacca
     6001 attcgcttcc gccaatctta atcaaacgaa gccctttgga ctcgaggata gcattggtaa
     6061 tcgtattgcg tttgtaaaca actaccacac ctggtgcaat agtcaatgta tttgaaccat
     6121 cattccattg ctcacgacca gcagcaacca tatcaccgcc accacaacgg atcaattcta
     6181 ctttttcaag accaaggttc acagccaaaa gttctgccaa gtcaccatgt tcttcttcaa
     6241 tatgaagcgt atcattttca taggttacag agaagacacg aaggtcacct tcaatttctg
     6301 ggtggatagt aaacttatca tagtcaacca tggtaaatac cgtatccaag tgcatgaatt
     6361 tacggttgtt agcaaattcg aatgccaata ctttcttgaa gccaacatgc tgttcaaaga
     6421 tatttaccaa tagtttttca attgatgcgg catcggtacg ttgtgaaata cctactgcca
     6481 aaacatcttt tgaaagaacc aattcatcac caccctcgat acgagtagtt tcttcacgat
     6541 tgtaaaccaa tggaactttt ccaccatatt ctgggtgatg agtgaagatg tatttaccat
     6601 acaaggtttc acggttccgt gtttctgaat acatgtggtt aagagaaaca gcattaccaa
     6661 tcgtagcaaa tggatcccgt gtgaagtaaa ggtttggcat tgggtctatt gcaaatgggt
     6721 aagaggattc aaccaaatct gtcaaacctt tttcttcagc agggatttct ggcaattctg
     6781 ccttttgaat accggccatc gttttctcaa ccagttcttg attatcttca atagacaaca
     6841 acaacttgcg aattgccttc ttagtcgccc gaccacgaat gttagcttct tcgagatatt
     6901 catcaataaa ttgttcacga atttcaggtg taacaagtga ctcagcagct aatttttcca
     6961 agtagagcac ttcgacacct tcatcacgaa gagcttgagc aaaagcatca tgctctttct
     7021 gtgcatcttc taagaatgga atatcatcga agagtaggcg ttctagatag tcaggcataa
     7081 ggttttcaat ttccttacct ggtctgtgta acataacttt tttcagctta ccaatttctg
     7141 aaaaaacatg aattggatgg tttgacatga tctgtcctcc ttgtagattt atacatgatg
     7201 ggaaacgagg aggaccgtac gctttcctgc ctctcatttc ctctttacat ccatagttta
     7261 acagagtaaa aaaacaaaaa cttgaaaacg ctcacatt
//
LOCUS       DASGBY010000097         7247 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.097, whole genome shotgun sequence.
ACCESSION   DASGBY010000097 DASGBY010000000
VERSION     DASGBY010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7247
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.097"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(117..806)
                     /locus_tag="U1396_001529"
     CDS             complement(117..806)
                     /locus_tag="U1396_001529"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEM5342711.1"
                     /translation="MKFGIIAAMPQELKILVEHLQDATEIDVLGRPYYQGRIGQHEVV
                     LVQSGIGKVMSAMSVAVLADRFSVDVIVNTGSAGAVAEGIAIGDVVVANQLAYHDVDV
                     TAFGYAYGQMAGQELYYPADQVLLEQLRTVLAEQEMISHVGLIVTGDSFIAGQERIAT
                     IKTHFPEVLAVEMEGAAIAQAAVNTGKPFLVIRAMSDTAQGDANITFDEFIIQAGERS
                     AQTLIAFLEKN"
     gene            complement(815..1135)
                     /locus_tag="U1396_001530"
     CDS             complement(815..1135)
                     /locus_tag="U1396_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342712.1"
                     /translation="MGKPLLTDEILEKVKKKQYSDQSSQFGHYRPNQDISMDDALFDP
                     YLEEDYQGYEEGQTIRIPVKPTVVKSRRIETIKREAFRSKVNKILFWVIILLIMFIIA
                     VLFI"
     gene            complement(1146..1691)
                     /locus_tag="U1396_001531"
     CDS             complement(1146..1691)
                     /locus_tag="U1396_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5342713.1"
                     /translation="MNFEEKTIERTEIFKGHIFDVVVDDVALPNGGTGKRELIFHKGA
                     VCVLAVTPEGKMILVKQYRKAIERTIYEIPAGKLELGEEDTLEDAALRELEEETGYTS
                     DKLTLLADFYSAIGFCNERIRLYLADNLIKVENPRPMDEDEVIELHEVTLEEALTLVA
                     TGDICDAKTIMAIQYLQLMRK"
     gene            complement(1700..3082)
                     /gene="glmU"
                     /locus_tag="U1396_001532"
     CDS             complement(1700..3082)
                     /gene="glmU"
                     /locus_tag="U1396_001532"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEM5342714.1"
                     /translation="MSNNYAIILAAGKGTRMKSDLPKVLHKVAGITMLEHVKRAVDAM
                     EPAKTVTIVGHKAELVQAVLEGQSEFALQSEQLGTGHAVMMAEPALAGLEGQTLVIAG
                     DTPLITGESLKNLINFHVSHKNVATILTAQTDNPFGYGRIIRNADGEVQKIVEQKDAN
                     DFEKQVKEINTGTYLFDNKRLFEALKDINTDNAQGEYYLTDVISIFRQAGEKVGAYVL
                     RDFDESLGVNDRVALATAEAVMRKRINEKHMVNGVTFINPDATYIDIDVEIGAEAVIE
                     ANVVLKGQTVIGERTVLTNGTRVRDAKIAADVVISNSDIEESVIEEGVTVGPYAHIRP
                     GSLLKKDVHVGNFVEIKASTLGQGTKSGHLTYLGNATIGNNVNVGAGTITVNYDGKNK
                     FKTTVGDNAFVGSNSTIIAPVTIGDNALLAAGSVITKDIPEDAIGIGRCRQENKEGYA
                     TRFPFHPSQK"
     gene            complement(3259..3729)
                     /locus_tag="U1396_001533"
     CDS             complement(3259..3729)
                     /locus_tag="U1396_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEM5342715.1"
                     /translation="MTPTQLWQEFLAINSQAGPEPESWAFGAEADRLADLVARGIKTS
                     TSSAHALYAVEGEEIPTAGGYDIILDGQGKAVCIIQTTKVYVTPFSQVTEKHAYKEGE
                     FRQGGDLSDIKEKSLIHWRQVHEELFTIWLAEAGLTFTDDMLVVCEEFELVYPK"
     gene            complement(3726..4277)
                     /locus_tag="U1396_001534"
     CDS             complement(3726..4277)
                     /locus_tag="U1396_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342716.1"
                     /translation="MILETNRLMLRPWSETDATDLFSQASHHEVGPAAGWPVHQSVEE
                     SREIIKTVLSQPETYALVLKETGQVIGSIGLMLGKQGGLDLPDSEAELGYWLGQGFWG
                     QGLVPEACQAILNYGFNQLNLEKVWCRAFVENSKSLRVQEKLGFVYQYLLEDVHFPLI
                     DEVRSERVNLLTREEWQSRKEKL"
     gene            complement(4290..4988)
                     /locus_tag="U1396_001535"
     CDS             complement(4290..4988)
                     /locus_tag="U1396_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HEM5342717.1"
                     /translation="MTKTALITGVSSGIGLAQAEIFLENGWRVFGIDLASKPDLAGDF
                     HFLQLDLTGDLSPVFSWCQTVDVLCNTAGILDDYRPHLDIEEDELARIFAVNFFAVTR
                     LTRPYLQQMVDRQSGIIINMCSIASSLAGGGGSAYTASKHALAGFTKQLALDYAKDKV
                     QIFGIAPGAVQTGMTQKDFDPGGLADWVADQTPIGRWSQPSEIAELTLMLASGKLASM
                     QGQIITIDGGWSLK"
     gene            complement(4981..5217)
                     /locus_tag="U1396_001536"
     CDS             complement(4981..5217)
                     /locus_tag="U1396_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2829 domain-containing protein"
                     /protein_id="HEM5342718.1"
                     /translation="MTFEEILPGLKAKKKYVRTGWGGAENYVQLFDTIEVHGQRLEAT
                     PYFLINVTGEGEGFSMWSPTPCDVLATDWVEVHD"
     gene            complement(5270..6064)
                     /locus_tag="U1396_001537"
     CDS             complement(5270..6064)
                     /locus_tag="U1396_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342719.1"
                     /translation="MSKQMEYRKQIEVIESQLTKENKEYMGRINGYMMIASVFHRQEE
                     AVTAQLLSIYQDVLEAQKDGLSAEDFLGKDSKQMADDLLSYLPPIGFMEVANLSGLML
                     IIYLGSQWLMDFAGTGTISLNWLGLICDAVLSLLLPSGIFLIIRGLIYQTSKIKVWAS
                     FLYIPLLFLVICGLRLWAMPKEPDLVLTGWELLVPLTLLGLALLFFQKEKLVRYVFMP
                     SYLFMIAGGVVNMVMTVPVWLNLVLLILPAMAFWIGSAILVVRKPK"
     gene            complement(6066..6383)
                     /locus_tag="U1396_001538"
     CDS             complement(6066..6383)
                     /locus_tag="U1396_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5342720.1"
                     /translation="MKETQMLKGVLDGCVLQIISQKEIYGYELVQELRNQGFENMVGG
                     TVYPLLQKLEKNDLILSQNKPSPDGPDRKYFYLTDQGKAYLEDFWSQWTELVQKVQRL
                     KGE"
     gene            complement(6380..6544)
                     /locus_tag="U1396_001539"
     CDS             complement(6380..6544)
                     /locus_tag="U1396_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342721.1"
                     /translation="MKLDKKSRGNWKLAGITLVMAIITGWALDSILILGILLASGLMF
                     GFFTDDEEGL"
     gene            complement(6735..>7247)
                     /locus_tag="U1396_001540"
     CDS             complement(6735..>7247)
                     /locus_tag="U1396_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342722.1"
                     /translation="DSHDTFLSGSFESELWESNILPNGTNAISLAYRAYAMRGFFSFA
                     GSLFFIGLLLSLIFLMAVVLVIYFKQISEGYEDRDRFVIMTKVGLDEDQTRQSIRKQL
                     LTVFFLPILLAFVHLAFAYKMLSSILLSIGVVNAGLMLQVTVGICGGYLLLYLVVYAI
                     TTRSYKQIIS"
BASE COUNT         1994 a         1770 c         1473 g         2010 t
ORIGIN      
        1 cattttgatt gctttgaaca taaagaaaga gagaacgaag ttcgtcctct ctaggtgtta
       61 gcttttcatc tacccactac agttgacaaa gagcctgtat tgttgtcaaa atctgcttaa
      121 tttttctcca gaaaggcaat cagggtctgg gcagaacgtt ctcctgcttg aatgataaat
      181 tcatcaaagg tgatattggc atctccctga gctgtgtcac tcatggcacg gataaccaag
      241 aatggcttac ctgtattgac agctgcttga gcgatagctg ctccttccat ctctacggca
      301 aggacttctg ggaaatgagt tttgatcgta gcgattctct cctgacctgc aataaaactg
      361 tcacctgtca caatcagacc cacatggcta atcatttcct gctctgctaa aacggttctt
      421 agctgttcta acaagacttg gtcggctgga taatacaatt cctgccctgc catttgcccg
      481 taagcatagc cgaaagccgt cacatccaca tcgtggtaag ccaattgatt cgctacaacc
      541 acatcaccga tggcaatacc ttcggcaaca gctcctgccg aacctgtatt gacaatgaca
      601 tcaaccgaaa aacgatctgc caaaacagcc acggacatag ctgacatcac cttaccgata
      661 cctgactgaa caagaacaac ttcatgttga ccgattcgtc cctgatagta aggtcgaccc
      721 aagacatcga tttcggttgc atcttgtaga tgctcgacca aaatctttaa ttcctgaggc
      781 atggctgcga taattccaaa tttcatctct tctcctaaat aaataatact gcaatgataa
      841 acattatcag taagatgatg acccaaaaaa ggattttgtt taccttactg cggaaagctt
      901 ctcgcttgat ggtttcgata cggcgacttt ttactacagt aggtttgacc gggattcgga
      961 tcgtttgtcc ctcttcatat ccctgataat cttcttctag atatggatcg aatagagcat
     1021 catccattga tatatcctgg tttggacgat agtgtccaaa ctggctagat tggtcggaat
     1081 actgtttctt tttcactttc tctaaaattt catccgtcaa caagggcttg cccattgcta
     1141 gtttcctact ttctcatgag ttgtaaatat tggatagcca tgatggtctt tgcatcacaa
     1201 atatcgccag tagccaccaa ggtcaaagcc tcttccaagg ttacctcatg taattcgata
     1261 acctcatctt catccattgg acgaggattt tcaaccttaa taaggttatc tgctaaataa
     1321 aggcgaattc gttcattaca gaaaccgatg gctgaataga aatctgccaa caaggtcagt
     1381 ttgtcactag tatagcctgt ttcttcttct aattcacgca aagcagcatc ttcaagcgta
     1441 tcttcttcgc ctagctccaa tttccccgcc ggaatttcat aaatagtacg ttcaatagct
     1501 ttgcggtatt gtttgaccaa aatcatttta ccttctgggg taacggctaa aacgcaaact
     1561 gctcccttgt ggaaaatgag ttcgcgctta ccagttccac catttggcaa ggcaacatca
     1621 tctactacta catcaaaaat gtgcccttta aaaatttctg tccgctcaat ggttttttct
     1681 tcaaaattca tatgattacc tatttttgac ttggatggaa cggaaaacga gtcgcataac
     1741 cttctttgtt ttcttgacga caacgaccaa taccgatggc atcctctgga atgtcttttg
     1801 taatgacaga acctgcagcc aacaaggcgt tgtccccaat agttactggt gcgataatgg
     1861 ttgagttaga gccaacaaag gcattatctc cgacggttgt tttaaattta tttttaccgt
     1921 cgtagttgac agtaatggta ccagcaccaa cgttaacatt attgccaatc gttgcatttc
     1981 ctaggtaggt caaatgacca gacttcgttc cttgaccaag tgtagaggcc ttgatttcca
     2041 caaagtttcc aacgtgaaca tcttttttca ggagactgcc tggacgaata tgggcgtatg
     2101 gtcctaccgt cacaccttct tcaatgacag attcttcaat atctgagttg ctgatgacga
     2161 catctgctgc aattttcgca tcacgtacac gagtaccatt ggttaaaaca gtacgttcac
     2221 caatcaccgt ttgccctttc aagacaacat tagcttcaat aacagcttct gcaccaatct
     2281 caacatcaat atcaatatag gtagcatctg ggttgataaa tgtcacacca ttgaccatgt
     2341 gtttttcatt gattcgtttg cgcataacag cttctgcagt cgcaagagcg acgcgatcat
     2401 tgacacccaa actttcatca aaatcacgca atacataggc accaaccttc tcacctgcct
     2461 gacggaaaat cgaaataaca tctgtcagat agtactcacc ttgggcattg tccgtattaa
     2521 tatctttaag cgcttcaaaa agacgtttat tatcaaacaa gtaggttcct gtattgattt
     2581 ctttcacttg tttttcaaaa tcgttggcat ctttttgctc aacaattttt tgcacttcac
     2641 catcagcatt gcgaataatc cgaccatatc cgaatgggtt atcagtctga gctgtcaaga
     2701 tagtcgcaac attcttgtgg ctgacatgaa agttaatgag gttcttcaag ctttctcctg
     2761 taatcagcgg tgtatctcct gcgataacaa gggtctgacc ttccaaacct gcaagagctg
     2821 gctcagccat cataacggcg tggcctgtcc ccaactgttc agattgaagg gcaaactctg
     2881 actgaccttc gagaactgct tggaccaatt ctgccttgtg accgacaatc gttactgttt
     2941 tagcaggttc catagcatct acagcccgtt tgacatgctc caacatggta attcctgcca
     3001 ctttgtgtaa gacctttggc aagtcagact tcatgcgagt tcccttaccc gccgctagga
     3061 taattgcata gttattgctc atagttttct ctcttttcaa tgatatactc ctattatagc
     3121 aaattttgat gtttttggaa aatagcagta ttatagggaa ttttcgtaaa taaaaaagaa
     3181 actggaatga agccagtttc tcaaaaattt ctagtattag aaaacaaact acaggttgat
     3241 tgcatccaat agaattgtct atttaggata aaccaattca aattcttcac agacaaccag
     3301 catgtcatct gtgaaggtca gacctgcttc ggccagccag atagtgaaaa gctcttcatg
     3361 gacctgtcgc cagtggatta gacttttctc ttttatatca gacaagtcac ctccctgacg
     3421 aaactcgccc tccttatagg catgcttttc cgtcacttgg gaaaagggcg tcacatagac
     3481 cttggtggtc tggataatgc aaacagcttt accttgtccg tccagaatga tgtcatagcc
     3541 accagctgtt ggaatttctt ctccctctac tgcgtagagt gcatgggcag agctggtcga
     3601 ggttttgatg cctctagcca ccaaatcagc cagtcgatca gcttccgccc caaaggccca
     3661 ggactccggc tcaggaccag cttgggaatt gatagcaaga aattcttgcc agagttgtgt
     3721 aggggtcata gtttttcctt cctagactgc cattcctctc ttgtcagcag attcactcgt
     3781 tcgctacgga cctcatcaat gagtgggaaa tgcacatctt ccaagaggta ttggtaaaca
     3841 aagcccagtt tttcttggac acgtaatgat ttgctatttt ctacaaaagc acgacaccag
     3901 actttctcta aattcaactg gttaaagcca tagttcagta tagcttgaca agcttctggt
     3961 accagaccct gtccccaaaa tccctgtcca agccagtagc ctagctcagc ttctgaatca
     4021 ggcaaatcaa gaccaccttg tttaccaagc atgagcccga tactgccaat cacctgtcct
     4081 gtttctttga gaacaagggc gtaggtttct ggttggctaa ggactgtctt gataatttct
     4141 cgactttctt ccacgctctg atgaacaggc caacccgctg caggaccaac ttcatgatga
     4201 ctggcctgag aaaataagtc agttgcgtct gtttcactcc aaggtcggag catcaatcta
     4261 ttggtttcaa gaatcatcga atttcctccc tacttcaaac tccagccacc gtcaatggtg
     4321 ataatttggc cttgcatgga agccagtttg ccactggcta gcataagggt cagctctgcg
     4381 atttcactgg gctgggacca gcgtccgata ggtgtctggt ctgccaccca atccgccaga
     4441 ccaccagggt caaagtcctt ctgggtcatg cctgtttgga cggcacctgg ggcaatgccg
     4501 aagatctgga ccttgtcctt ggcatagtcc agtgccaact gcttggtaaa gcctgccaaa
     4561 gcgtgcttgg aggcggtata ggctgaacct cctccacctg ctagactgga ggcaatggag
     4621 cacatgttga taatgatgcc agactgtctg tccaccattt gttgcagata gggacgggtc
     4681 agtctggtca ccgcaaaaaa attgaccgcg aagatgcgag ctaattcatc ctcctcaata
     4741 tccaggtggg gacggtagtc gtctagaatg cctgcggtgt tacagaggac atcaactgtc
     4801 tggcaccatg aaaagacggg tgataaatcg cctgtcaggt ccagctgtag aaagtggaaa
     4861 tcgcctgcca aatcaggctt gctagccaga tcaatcccga agacacgcca gccattttcc
     4921 aaaaaaatct ccgcctgagc tagtccaatg ccgctggaaa cgccggtgat gagggctgtc
     4981 ttagtcatgg acttccaccc agtcggtcgc aaggacatcg cagggggtcg ggctccacat
     5041 ggagaagccc tcgccctcgc cggtcacgtt gatgaggaaa tagggcgtcg cctccagcct
     5101 ttgcccgtgg acctcgatgg tgtcaaagag ctggacgtag ttctccgccc cgccccagcc
     5161 tgtgcgaacg tactttttct tggccttcaa gcctggtaaa atctcttcaa atgtcatggt
     5221 ttactccttt attcttctat ctttcaacca ttataccaaa aaatcgcttc tatttcggtt
     5281 ttctcaccac caaaatcgca cttccaatcc aaaaggccat agctggcaga atgagcaaaa
     5341 ccagattgag ccaaactgga acggtcatga ccatattcac cacaccgcca gcaatcatga
     5401 acagataact aggcataaag acatagcgga ccaacttttc cttttggaaa aatagcagag
     5461 cgagaccgag caaggtgagt ggtactagaa gctcccagcc agtcaagact aagtcaggtt
     5521 ccttgggcat tgcccaaaga cgaaggccac aaattacgag aaaaagaagg ggaatgtaga
     5581 gaaaacttgc ccaaaccttg attttgctgg tctggtaaat cagaccgcga ataatgagga
     5641 aaatccccga ggggaggagg aggctaagta ccgcgtcgca gatcaagccc agccagttga
     5701 gcgaaatggt gcctgtacct gcaaaatcca tcagccattg gctgccgagg tagatgatca
     5761 gcatgaggcc actcaggttt gcgacttcca tgaaaccaat cggagggagg tagctgagta
     5821 ggtcgtccgc catctgcttg ctgtctttgc ccagaaaatc ctccgcagaa agcccgtctt
     5881 tttgagcttc aagaacatct tggtaaatgg ataagagctg ggcagtcact gcttcttcct
     5941 gcctgtgaaa aacagaggca atcatcatat aaccattgat acggcccatg tattccttgt
     6001 tttccttggt cagctgagat tcaatcactt caatctgctt gcggtattcc atttgtttgc
     6061 tcatcttatt ctcctttcaa tcgttgaacc ttttggacca attccgtcca ctggctccaa
     6121 aaatcttcta gataagcctt tccctggtct gtcagataga aatacttcct gtctggtccg
     6181 tctggcgagg gcttattctg actaagaatc aggtcatttt tttctaactt ctgaaggagt
     6241 ggataaaccg tccctccgac catgttttca aagccctgat ttctcaactc ctgaaccaat
     6301 tcataaccat aaatctcctt ctggctgata atttgtaata cacagccatc taggaccccc
     6361 ttgagcattt gagtttcttt cataagccct cctcatcatc tgtaaaaaat ccaaacatca
     6421 agcctgacgc taacaggatg cctaagatca aaatagaatc caaagcccag ccagttataa
     6481 tggccatcac aagcgtgatg cctgctagtt tccaatttcc ccgacttttc ttatccagtt
     6541 tcatactgcc tccctaccta gtttgtaata cagactagtt tgataaaaat aaaagtgatt
     6601 ttctttgtct tctatcacta gtttgtttta cctattagct ttgtatctat agtataacac
     6661 aaggcggcta gtatgtaaaa caaaatagtg aaaaatattc aaaaaaaaaa taaaaaactt
     6721 gggttgcccc aagtttagga aataatttgt ttgtaagacc gtgtcgtgat ggcatatacc
     6781 actaggtaaa ggaggagata gccaccacag atgcctaccg ttacttgcag cataagccct
     6841 gcattgacca caccaataga caacaagata gacgagagca tcttgtaggc aaatgcaaga
     6901 tgaacaaagg caagtaggat aggtaggaaa aagacggtca gcaattgctt gcgaatggac
     6961 tgtctcgtct gatcctcatc cagaccaacc ttggtcataa tgacgaagcg atctctgtct
     7021 tcatagcctt ctgaaatctg tttgaagtaa atcaccagca ccaccgccat caaaaagatg
     7081 agtgatagca agaggccgat gaagaaaagt gaacctgcaa aactgaagaa accacgcatc
     7141 gcataggcac gataggcgag actgatggcg ttcgttccat tcggtaatat attggactcc
     7201 caaagctcac tttcaaaact tcctgataaa aaggtgtcat ggctatc
//
LOCUS       DASGBY010000098         7162 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.098, whole genome shotgun sequence.
ACCESSION   DASGBY010000098 DASGBY010000000
VERSION     DASGBY010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7162
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.098"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(23..1756)
                     /gene="ptsP"
                     /locus_tag="U1396_001541"
     CDS             complement(23..1756)
                     /gene="ptsP"
                     /locus_tag="U1396_001541"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEM5342723.1"
                     /translation="MTEMLKGIAASDGVAVAKAYLLVQPDLSFETVTVEDTNAEEARL
                     DAALEASQNELSVIRENAVASLGEEAAAVFDAHLMVLADPEMIGQIKETIRAKKTNAE
                     TGLKEVTDMFIAIFEGMEDNPYMQERAADIRDVAKRVLAHLLGVRLPNPATIDEESIV
                     IAHDLTPSDTAQLNKQFVKAFVTNIGGRTSHSAIMARTLEIAAVLGTNNITEIVKDGD
                     VLAVNGITGDVVINPSEEVIAEFKVAGEAYAKQKAEWALLKDAQTVTADGKHFELAAN
                     IGTPKDVEGVNDNGAEAVGLYRTEFLYMDSQDFPTEDEQYEAYKAVLEGMNGKPVVVR
                     TMDIGGDKELPYFDLPHEMNPFLGFRALRISISETGNQMFRTQLRALLRSSVHGKLRI
                     MFPMVALLTEFRAAKAILEEEKANLLAEGVAVADDIQVGIMIEIPAAAMLADQFAKEV
                     DFFSIGTNDLIQYTMAADRMNEQVSYLYQPYNPSILRLINNVIKAAHAEGKWAGMCGE
                     MAGDQQAVPLLVGMGLDEFSMSATSVLRTRSLMKKLDTAKMEEYAHRALTECATAEEV
                     LELQKEYVDFD"
     gene            complement(1761..2024)
                     /locus_tag="U1396_001542"
     CDS             complement(1761..2024)
                     /locus_tag="U1396_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019775469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HEM5342724.1"
                     /translation="MASKDFHIVAETGIHARPATLLVQTASKFASDITLNYKEKSVNL
                     KSIMGVMSLGVGQGADVTISAEGADADDAIAAITETMEKEGLA"
     gene            complement(2180..3361)
                     /gene="icd"
                     /locus_tag="U1396_001543"
     CDS             complement(2180..3361)
                     /gene="icd"
                     /locus_tag="U1396_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEM5342725.1"
                     /translation="MAEKILMREGRLIVPDCPVIPYIEGDGIGRDIWSVSQKVIDAAV
                     KKAYAGQRSIQWREVLAGEKAYELTGTSLPNETLEIIREHLVAIKGPLGTPIGKGQRS
                     LNVALRQELDLYACVRPIRYFKGVPSPLKEPEKTDITIFRENTEDIYAGIEWEAGSDE
                     VAKVISFLQEEMGVVNIRFPESSSIGIKPISEEGSKRLIRSAIEYALEHQLKIVTLVH
                     KGNIQKFTEGGFRKWGYELAKEEFATELAEGTLVVNDIIADNFLQQILLAPENFQVVA
                     LTNLNGDYASDALAAQVGGIGISPGANINYQTGHAIFEATHGTAPDIAGKDLANPCSL
                     LLSACMMLEYIGWKEAATLIIQALEDAFINKNVTLDFAKILDVAHQSTSQFSEVLIDS
                     I"
     gene            complement(3364..4482)
                     /locus_tag="U1396_001544"
     CDS             complement(3364..4482)
                     /locus_tag="U1396_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEM5342726.1"
                     /translation="MTETNGLKDAIACDTRISAIENDRLSYAGYDIAELMENNASFEE
                     VIYLLWNLHLPTQIELNYFEKSLRKEYAISDAVEQCILIQSRRHLHPMSVLRSTVSLL
                     GVYNVHAEENSLEALYEQSIQIMGKVPTIIATFARLRRGLVPIEPRSDLGFAANFLYM
                     LNGEEPSDLQIKAFNKALVLHADHELNASTFAARVTASTLTDLYSCVTTAIGTLKGSL
                     HGGANERVFDMLLAIRESGDAERYLQKKLDSKEKIMGFGHRVYKTVDPRQEYLKEMAR
                     DLTFGTDDEAFYRLSEEVESFIKNKKGLIPNVDFYSATVYHVLGIDSDIFTLIFAMSR
                     MAGWIAHVQEQRKNNKLIRPRSSYLGGRNLVYIPIGKR"
     gene            complement(4479..7148)
                     /gene="acnA"
                     /locus_tag="U1396_001545"
     CDS             complement(4479..7148)
                     /gene="acnA"
                     /locus_tag="U1396_001545"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEM5342727.1"
                     /translation="MEKSHRKRLIHKGEEYSYYALDSISMEEKVDIHSLPYTIRILLE
                     SLLRKEDGVDVTKNHIMELLHYQAASPKGEIPFKPSRVILQDFTGVPVVVDLASMRDA
                     VVKAGGNPELINPEIPVDLVIDHSVQVDFFGTEDALEKNIALEFERNNERYEFLKWAE
                     NSFENYRAVPPATGIIHQVNIEFLSDVIINKDGLLYPDSMFGTDSHTTMINGIGVLGW
                     GVGGIEAEAAMLGEASYFPVPEVIGVRLAGQLPKVATATDLALKVTQLLRQENVVGKF
                     VEFFGPGLSSLALADRATVSNMAPEYGATCGYFPIDGETLHYMRLTNRSEEHVELTEA
                     YTKANYLFYDAERFPSYSKVLELDLSTVVPSISGPKRPQDLIELTDAKAEFQASLIRE
                     VGVRGFGLEEAELDKTATVKYVEGDEQIQTGHVAIAAITSCTNTSNPYVLLAAGLLAK
                     NAVEKGLAVSKTVKTSLAPGSKVVTGYLKKSGLQTYLDALGFNLVGYGCTTCIGNSGD
                     LRPEVAEAIKEEDLLVSAVLSGNRNFEGRINPLVKANFLASPPLVVAYAIVGNMNVDL
                     TRDPLGYDEKQQAVYLADIMPSREEVDDYIERYVTRDLYKEEYQQVFTDSQAWNAIET
                     KTDKNYNWNSSSTYIQNPPYFDNMQVDLSIKPLENLSVLAKFGDSVTTDHISPAGNIA
                     RLSPAARYLEENGIVYKDFNSYGSRRGNHEVMMRGTFANIRIKNELAAGKIGGWTRVG
                     DEILPIYDAAMKYKAAGIGSIVIAGKDYGMGSSRDWAAKGSSLLGVKAVLAESFERIH
                     RSNLVMMGVLPLQFLEGQSAESLGLTGHESYTIDLPEDVGVGQIVTVHAQIDDVTKEF
                     QALVRFDAEADIRYYRHGGILPMVVRKKLGGKV"
BASE COUNT         2086 a         1720 c         1237 g         2119 t
ORIGIN      
        1 aattccctgc ttttttcaac gattaatcga aatcaacata ctctttttga agttcaagaa
       61 cttcttctgc cgttgcacat tctgtcaagg cacggtgagc gtattcttcc atcttagctg
      121 tatcaagttt cttcataagg ctacgtgtac gaagtacaga tgttgcactc atagagaact
      181 catccaagcc catacctaca agaagtggaa cagcttgttg atcaccagcc atctcaccac
      241 acataccagc ccatttacct tctgcgtgtg cagccttgat aacattgttg atcaagcgaa
      301 ggattgatgg gttatatggt tggtagaggt atgaaacttg ttcattcata cggtctgcag
      361 ccattgtata ctggataagg tcgttcgtac cgattgagaa gaagtcaact tctttggcaa
      421 attggtctgc aagcattgct gctgcaggga tttcaatcat gataccaact tggatatcat
      481 ccgcaactgc tacaccttca gccaacaagt ttgctttttc ttcttcaagg attgcttttg
      541 ctgcacggaa ttcagtcaac aaggcaacca ttgggaacat gatacgaagt ttaccatgta
      601 ctgatgaacg aagaagggca cgcaactgag tgcggaacat ttggttacca gtctcagaga
      661 tagagatacg aagggcgcgg aaacctagga atgggttcat ttcgtgtgga agatcgaagt
      721 aaggaagttc cttatcacca ccaatatcca ttgtacgaac tacgactggc ttaccattca
      781 tgccttcaag aacagccttg taagcttcgt attgctcgtc ttcagttggg aagtcttgtg
      841 aatccatgta caagaattct gtacggtaaa gaccaacagc ttctgcaccg ttatcattta
      901 caccttcaac gtcttttggt gtaccgatat ttgctgccaa ttcaaagtgt ttgccgtcag
      961 ctgtaactgt ttgagcatct ttcaaaagag cccattcagc tttttgttta gcataggctt
     1021 caccagctac tttaaattct gcaatcactt cttcagaagg gttaatcact acatcacctg
     1081 tgataccgtt aacagccaat acatcgccgt ctttaacgat ttcagtaatg ttatttgtac
     1141 ccaaaacagc agcaatttca agtgtacgag ccatgatagc tgagtgactt gtacgaccac
     1201 caatgttcgt tacgaaagct tttacaaact gtttgtttaa ttgcgctgta tctgaaggtg
     1261 tcaagtcatg tgcgataacg attgactctt cgtcgatagt tgctgggttt ggcaagcgaa
     1321 caccaagcaa atgtgccaat acacgtttgg ctacgtcacg aatatctgcg gcacgctctt
     1381 gcatgtatgg gttatcttcc ataccttcaa agatagcgat aaacatatcc gtaacttctt
     1441 tcaaaccagt ctcagcgttt gttttcttcg cacgaattgt ttccttgatt tgaccaatca
     1501 tttctgggtc agcaagaacc atcaagtgtg catcaaatac ggctgcggcc tcttcaccta
     1561 ggctagctac tgcgttctca cgaataacag aaagctcgtt ttgagatgct tctagagcag
     1621 catccaaacg agcttcctct gcatttgtat cttcaactgt aacagtttcg aaggacaaat
     1681 ctggctgaac gagtagatat gccttagcaa cagcaacacc atctgatgct gcgattcctt
     1741 taagcatttc tgtcatattc ttatgccaat ccttcttttt ccattgtttc agtgatagct
     1801 gcgattgcgt cgtcagcatc agcaccttca gcagagattg ttacgtcagc gccttgacca
     1861 acaccaagac tcataacacc catgatagat ttaaggttaa cagacttttc tttgtagttc
     1921 aaagtgatgt ctgaagcaaa tttactagct gtttgcacaa gcaaagttgc tggacgtgcg
     1981 tggatacctg tttctgccac aatgtggaag tcttttgaag ccatatttgg attctccttt
     2041 atttttacaa aattgtgagt tatttgtgat aacccttaca aaggacatta taccactttt
     2101 tgaaatcatt ttcaagattt ttttaccttt ctttcatgtt tccgtcataa aaagataggt
     2161 tcattttact ttttcttcat taaatagaat ctattagaac ttctgaaaat tgactagtag
     2221 attgatgagc aacgtccaaa attttagcaa aatcaagcgt aacattttta tttataaaag
     2281 cgtcctccaa ggcctgaata attaaagtag ccgcttcttt ccagcctata tattctaaca
     2341 tcatacaagc cgaaagcaag agggaacatg gattagccaa atcctttcct gcaatatcag
     2401 gagcagttcc atgtgtcgct tcaaagatag catgacctgt ctgataatta atattagcac
     2461 ccggtgagat gcctattcct ccgacctgag ccgcaagagc atctgatgca taatctccat
     2521 ttagatttgt aagagcaacc acttggaagt tttccggcgc caataaaatc tgctgcagaa
     2581 agttatccgc aataatgtca tttactacca aagtcccctc tgcaagttct gtagcaaatt
     2641 cttctttcgc caattcataa ccccacttgc ggaaaccgcc ttctgtaaac ttttgaatat
     2701 ttcccttatg aactaaggtc actatcttca attgatgttc tagggcatat tctattgcag
     2761 agcgaatgag gcgtttactc ccttcttccg aaatcggttt gataccaata cttgaagatt
     2821 ctggaaaacg gatatttacc actcccattt cttcttgcag aaaggaaatg actttggcaa
     2881 cctcatctga accagcctcc cattcaatac ctgcataaat atcttctgta ttttcacgaa
     2941 aaatagtaat atccgtcttt tcaggctctt tcagcggact tggcactccc ttaaaatagc
     3001 gaatcgggcg cacacaggca tacaaatcta attcttgacg aagtgcaaca ttaagagaac
     3061 gttgaccttt cccaatcggc gttcccaagg gacctttgat tgcaactaaa tgctcacgga
     3121 ttatttccag tgtctcattc ggcaaagaag ttcccgttaa ttcataagcc ttttctcctg
     3181 ccaaaacctc cctccactga atagaacgtt gacctgcata ggcttttttc actgcagcat
     3241 caataacttt ttgactgact gaccaaatat ccctgccaat accatctcct tcaatatagg
     3301 gaataacggg acaatctggg acaattaacc gtccctctct cattaggatt ttttctgcca
     3361 tatttacctc tttccaatcg ggatgtaaac caaattccta ccacctaagt aggaagagcg
     3421 cggacgaatc aatttattat ttttccgttg ttcctggaca tgtgcaatcc accccgccat
     3481 acggctcatt gcaaaaatca atgtaaaaat atcactatca atacctagca catggtaaac
     3541 tgtcgccgaa taaaaatcta cgtttggaat taaacctttt ttgtttttaa taaagctttc
     3601 tacttcctct gacaatctat aaaacgcttc atcgtctgtt ccgaatgtca aatcacgcgc
     3661 catctccttc aaatactctt ggcgaggatc aaccgtttta tagactcgat ggccaaatcc
     3721 cataattttt tccttcgaat ccagcttctt ctgcaaatat ctctcggcat caccactctc
     3781 gcgaatagcc agcaacatgt caaacactcg ttcatttgca ccaccatgca atgagccttt
     3841 cagagtccca attgccgtgg taacacaaga atataaatcc gttaacgttg atgccgtgac
     3901 acgcgcagca aaagtagatg cattcaattc atgatcagca tgaagcacca aagctttatt
     3961 aaacgctttg atttgtaaat cactcggctc ctcaccattc agcatataaa gaaaattcgc
     4021 cgcaaaaccc agatcagacc gcggttcaat tggaaccaat ccgcgtctca aacgagcaaa
     4081 tgttgcaata atcgtcggaa ccttgcccat aatctgaata gattgttcat acaaagcttc
     4141 taacgaattc tcttcagcat gtacattata tactccaagg agagatactg tcgaacgcaa
     4201 cacgctcata ggatgcaaat gtcgccgtga ttgaatcaga atacattgct ctaccgcatc
     4261 tgaaatcgca tattcttttc gcagactttt ctcaaaataa tttaattcaa tctgagttgg
     4321 caaatgcagg ttccacagaa gatagatgac ttcctcaaaa gaagcgttat tctccatcaa
     4381 ttcagcaatg tcataccctg cataggacaa gcggtcattt tcgattgcac tgattcgcgt
     4441 atcacaggca atcgcatctt ttaacccatt cgtttctgtc atacctttcc tcctagtttc
     4501 tttcttacta ccataggtaa aatacctccg tggcgataat aacgaatatc cgcctctgca
     4561 tcaaaccgca ccagagcttg aaactccttt gtaacatcgt ctatttgcgc atggactgtt
     4621 acaatttgac caacaccgac atcttctggc aagtcgattg tatagctttc atgtccagtc
     4681 aagccaagac tttctgccga ctgaccttct aaaaattgta aaggaagaac acccatcatc
     4741 actaaatttg aacggtgaat ccgctcaaat gactcagcaa gaacagcctt cacaccaagt
     4801 aaacttgaac ctttggctgc ccaatcacgg cttgacccca tcccatagtc tttaccagca
     4861 ataacaatac taccgatacc agcggcctta tatttcatgg ctgcatcata gataggaaga
     4921 atctcatcgc caactcttgt ccaaccacca atttttccag ctgccagctc attctttata
     4981 cgaatatttg caaaagtccc acgcatcatg acttcatgat ttccacgacg acttccataa
     5041 gaattaaaat ccttataaac aatgccattc tcttcgagat aacgagctgc aggactcaat
     5101 cgtgcaatat tccctgccgg ggaaatatga tctgtcgtta cagaatcgcc aaatttagcc
     5161 aaaacagata aattttccag tggttttatg gataaatcta cctgcatgtt gtcaaaatag
     5221 ggcggatttt gaatataggt agaagatgaa ttccaattgt aattcttatc tgtttttgtt
     5281 tcaatcgcgt tccaagcctg actatctgta aatacctgtt ggtattcttc cttataaagg
     5341 tcacgagtca cataacgctc aatgtagtca tctacctcct cacgacttgg cataatgtcc
     5401 gcaaggtaga cagcttgttg cttctcatca taccccagcg gatcccttgt taaatctaca
     5461 ttcatatttc ccacaatagc ataggcaaca acaagcggtg ggctcgctaa gaaattagct
     5521 ttaaccaatg gattaatccg tccttcaaag ttacgatttc cagataatac cgcagaaacc
     5581 aataaatctt cttccttaat cgcctctgct acttcaggac gcagatcacc tgagttaccg
     5641 atacaagttg tacaaccata accaaccaaa ttgaacccta aggcatctag ataggtctgc
     5701 aaacctgatt ttttcaaata gccagtcact acttttgagc ctggtgccaa tgacgtcttg
     5761 accgtcttag aaactgccaa acctttttct accgcatttt ttgccagtaa tcctgccgcc
     5821 aaaaggacat acggattgga ggtatttgta cacgaggtaa tcgccgcaat agcaacatga
     5881 cctgtttgaa tttgctcatc tccttcaaca tacttaaccg tggctgtttt atctaactct
     5941 gcttcctcca aaccaaatcc acgcacacct acttcacgta ttaaactagc ctgaaactct
     6001 gcttttgcat ctgttaattc tatcaaatcc tgtggtcttt taggaccaga aatagatggg
     6061 actactgtcg ataaatccaa ttctaaaacc ttgctataag acggaaaacg ttcagcatca
     6121 tagaataaat aattagcctt ggtataggct tctgtcaact ccacgtgctc ctccgaacgg
     6181 ttggtcaatc tcatataatg taaagtttct ccatcgatcg ggaaatagcc acaagtcgca
     6241 ccgtattctg gagccatatt tgaaacagtt gctcgatccg ctaatgcaag agaagataaa
     6301 cctggtccaa aaaattcgac aaacttccca actacatttt cctgacgtag aagttgagtg
     6361 accttaagcg ccaaatccgt tgcagtggca accttaggca attgcccagc taggcgaaca
     6421 ccaatcacct caggaacggg aaaataagat gcttcaccca acattgcagc ttccgcctca
     6481 ataccaccta caccccaacc aagtacacca ataccgttaa tcatggtcgt atgactgtct
     6541 gtaccaaaca tagaatctgg ataaagcaaa ccatccttgt tgataataac atcgcttaga
     6601 aattcaatgt ttacctgatg gataattcct gtcgctggag gcacagcgcg ataattttca
     6661 aaggaattct ctgcccattt cagaaattca tagcgttcat tatttctttc gaactctaag
     6721 gcaatatttt tctccagagc atcttcagtc ccaaaaaaat caacttgaac agagtggtcg
     6781 atgactaaat ccactggaat ttccgggtta atcaattcag ggtttccacc tgctttcacc
     6841 accgcatcac gcatggaggc taaatctacc acaacaggaa cacctgtaaa atcttgcaaa
     6901 ataacacgac taggtttaaa ggggatttcc cctttaggag atgcagcctg ataatgaagc
     6961 aactccatta tgtgattttt tgtaacatcc acaccatctt cttttcttaa aagactctct
     7021 aataaaatac gaatagtata gggaagtgaa tgaatatcca ctttttcttc cattgatatc
     7081 gaatccaatg cataatatga atattcttcc cctttatgaa tcaagcgttt tctatgtgat
     7141 ttttccatat tttataacct ct
//
LOCUS       DASGBY010000099         7100 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.099, whole genome shotgun sequence.
ACCESSION   DASGBY010000099 DASGBY010000000
VERSION     DASGBY010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7100
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.099"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            207..539
                     /locus_tag="U1396_001546"
                     /pseudo
     CDS             207..539
                     /locus_tag="U1396_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(587..2125)
                     /locus_tag="U1396_001547"
     CDS             complement(587..2125)
                     /locus_tag="U1396_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClC family H(+)/Cl(-) exchange transporter"
                     /protein_id="HEM5342728.1"
                     /translation="MENHRKEVSFISQSILYSVLRGSLVGIVAGLVVVAFRLAIEKLF
                     SVFTHLYSLATDNAIYLLLIGGLYLVIALLVGKLIKDEPNAKGSGIPQVEAELKGIMD
                     LNWWSVLWRKFIGGVLSIASGLMLGREGPSIQLGAVTAKGVSVLLKSSEMERRSLIAS
                     GAAAGLAAAFNAPIAGLLFVVEEVYHQFSRLVWVSALAASITANFISLHVFGLMPVLH
                     MPKDLQLLSLDQYWIYILLGVFLGLAGYVYEIVILNIQDFYTLLSKIIPLPVPYYSVF
                     AFLFIIPIGYFFSNLLGGGHHLILELPYLEQGLLTLAILILIRFVWSMISYGSGLPGG
                     IFLPILTLGSLLGLFVARFFLDIGFISQEQMLLFIVLGMAGFFAAISKAPLTAIILVT
                     EMVGSLNQLMVIGLVALSSYVMMDLLGGAPVYEAMLEKILPEEVEQQEHMTLIEIVVN
                     ETLDQIFVSELRLPDSCLITSQIHHGKSRIVKGNSQLSMGDSLLVAVPISQIHTVRRI
                     FEGD"
     gene            complement(2239..3309)
                     /locus_tag="U1396_001548"
     CDS             complement(2239..3309)
                     /locus_tag="U1396_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5342729.1"
                     /translation="MKRLYSFFVGIIAIVLVLWGISYKLEADSTQGTTDKLVIYNWGD
                     YIDPELLAEFTAETGIQVDYQTFDSNESMYTKIKQGGTTYDLTIPSEYMISKMTEENM
                     LIKLDKSKIEGIENIDPRFMGLSFDKNNDYSIPYFWGTLGIVYNETMVENPPQEWEDL
                     WSEEYRDNIMLIDGVREVMGFGLQSLGYSLNSNNPTEIEKAAEHLYNLTPNVKAIVAD
                     EIKGYMIQDAAAIAVSFSGEASEMLDGNENLRYVVPSKGSNLWFDNMVIPKTAKNIDG
                     AYAFMSFMLRPENALRNAEYVGYSTPIPAAKAMLDEETQNDESFYPSEETMKKMEVYD
                     NLGAEMLGMYNDLYLQFKMYRK"
     gene            complement(3309..4079)
                     /locus_tag="U1396_001549"
     CDS             complement(3309..4079)
                     /locus_tag="U1396_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342730.1"
                     /translation="MKKFANIYLTVAFLLLYLPIFYLIFYAFNEGGDMNGFTGFTLEH
                     FSSMLGDSRLMLILAQTFLLAFLSSLIATIIGTFGAIYIYQAKPRFQNALLSVNNILM
                     VAPDVMIGASFLILFTMIGFQLGFVSVLLSHIAFSIPIVVLMVLPRLKEMNADMISAA
                     YDLGATQPQMLKEIMLPYLTPAIIAGYFMAFTYSLDDFAVTFFVTGNGYSNLSVEIYS
                     RARQGISLEINALSTLVFLFSILLVVGYYFISREKEAN"
     gene            complement(4079..4879)
                     /locus_tag="U1396_001550"
     CDS             complement(4079..4879)
                     /locus_tag="U1396_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342731.1"
                     /translation="MKKTSRLFAIPYALWVFLFVLAPVALIIFKSFFDIHGNFTLANY
                     QTYFNSPNMTYLRMSFNSIFYAGIITLVTLLVSYPTAYFLTKLKHRQLWLMLIILPTW
                     VNLLLKAYAFIGIFGQHGSINQFLEFIGLGAQQILFTDFSFIAVAAYIEIPFMILPIF
                     NALDDLDKNLINASRDLGATPWQTFTKVIFPLSMNGVRSGVQAVFIPSLSLFMLTRLI
                     GGNRVITLGTAIEQHFLTTQNWGMGSTIGVVLILAMLLIMWMTKERKK"
     gene            complement(4863..6017)
                     /locus_tag="U1396_001551"
     CDS             complement(4863..6017)
                     /locus_tag="U1396_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342732.1"
                     /translation="MKKPIIEFKNVSKVFEDSGTTVLKDISFELEEGKFYTLLGASGS
                     GKSTILNIIAGLLDASSGDIYLDGQRINDVPTNKRDVHTVFQSYALFPHMTVFENVAF
                     PLKLRKIDKAEIERRVTEALQMVRLSGYENRSIQKLSGGQRQRVAIARAIINQPRVVL
                     LDEPLSALDLKLRTEMQYELRELQQRLGITFVFVTHDQEEALAMSDWIFVMNEGEIVQ
                     SGTPVDIYDEPINHFVATFIGESNILPGRMIEDYLVEFNGKRFEAVDGGMRPNEEVEV
                     VIRPEDLQITLPEEGKLQVKVDTQLFRGVHYEIIAYDDLGNEWMIHSTRKAIVGEVIG
                     LSFEPEDIHIMRLNETEEEFDARIEEYVEVEEVEDGLINAIEEERNEENL"
     gene            complement(6056..6964)
                     /gene="murB"
                     /locus_tag="U1396_001552"
     CDS             complement(6056..6964)
                     /gene="murB"
                     /locus_tag="U1396_001552"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEM5342733.1"
                     /translation="MKDKIRLELEGIDIRFDEPLKEYTYTKVGGAVDYLAFPRNRYEI
                     VRIVEFAKREGIPWQVLGNSSNIIVRDGGIRGFVIRMDKLNSVTVSGYTIEAEAGANL
                     IETTKVALFHSLSGFEFACGIPGSIGGAVYMNAGAYGGEVAHILVSAQILTPAGYVET
                     LDNRELRFGYRSSILQENGAIVLSAKFALKPGNHTVIQQEMARLTHLRELKQPLEYPS
                     CGSVFKRPLGHFAGQLIMDAGLKGYRIGGVEVSEKHAGFMVNIENGTASDYENLIAHV
                     IEVVEKSSGITLEREVRIIGDPADTL"
BASE COUNT         2281 a         1524 c         1329 g         1966 t
ORIGIN      
        1 gattatatac ctagtgaggg ccttgcggtt ggtacattat tgatgtgaat tatgatgaca
       61 aaactgctcc agcctactga taagatccac aatatacact caagaatatg actaaaattc
      121 agtagatagg ctctctaact tataaggaag gaattgtcat agataatcat gtgtagatca
      181 agtcgatatt gttgtttgta ttcccctcaa cttgtccaaa gcgttactta gctacatttg
      241 atacaacgac taaaggtcta cgtgcttacc acgattttct cagtcaattt catgtggaag
      301 ctgttggtat ggaaagcacc ggtgtctatt ggcgacctgt ctggcatgct ctatgtgagg
      361 acttcgagct aatacttgct caaccagccc acatgaaggc cattacaggt cagaaaactg
      421 acaagaaaga cgcttactgg actgccaaat gaatgcggat tggtctgctt cctcggagtt
      481 tcgttcccga tgaaatcatt cctgaattga gagagttgac cagacaacag aaacattata
      541 atattgggac ttttctcatc tctttgttaa gacaatctaa aaaatgctaa tctccctcaa
      601 atatcctacg aacggtatga atttgagaga ttggaactgc aacgagcaag gaatccccca
      661 tagaaagttg gctatttcct ttcacaatcc ttgacttacc gtgatgaatt tgactggtga
      721 tcaagcatga atccggcaaa cgtaactcgc taacaaatat ttgatccaat gtttcgttga
      781 caacaatctc tattaaggtc atgtgttctt gctgttctac ttcttctggc agaatttttt
      841 ccaacattgc ttcatagact ggcgcgccac ctaagaggtc catcatcaca taggaactca
      901 aagctaccaa cccgatgacc atcaattgat tcaaacttcc aaccatttca gttactaaaa
      961 taatagcagt tagaggtgct ttggaaatcg ctgcgaaaaa gcctgccatt cccaatacaa
     1021 taaacaatag catctgctcc tgactgatga aaccaatatc aaggaagaac cgtgcgacaa
     1081 aaagcccaag gagacttcct aaggttaata tgggcaaaaa gatgccccct ggtagaccag
     1141 aaccatagga aatcatgctc catacaaatc gtattaaaat caagattgcc aatgtcagta
     1201 gtccttgttc caaatatgga agctctaaaa tcaaatgatg cccgccaccc aacagattag
     1261 agaaaaaata accaatcggt ataataaaca aaaaggcaaa tacactgtag tatggaactg
     1321 ggagaggaat gatttttgag aggagggtat agaaatcttg tatattgagg ataacaattt
     1381 catacacata tccagcaagt ccaaggaaaa ctccaagtaa gatatagatc caatattggt
     1441 caagagatag taactgtaag tccttcggca tatgcaaaac aggcattaat ccaaaaacat
     1501 gtaaggaaat aaagttcgca gtgatactgg ctgccagggc tgagacccat accagacgtg
     1561 aaaactgatg atagacttcc tccacaacaa ataaaaggcc tgctattggt gcattgaaag
     1621 ctgctgccaa acctgccgca gcgccactag caatcaaact ccttctttcc atttcactgg
     1681 atttaagaag aactgataca cctttagccg ttacagctcc taattgaata ctgggacctt
     1741 cacgccccag cattagacca gatgcaatgg ataaaacacc gccgataaat tttctccaaa
     1801 ggactgacca ccagtttaaa tccataattc cttttagttc tgcctccacc tgaggtatac
     1861 cagaaccttt tgcatttggc tcgtctttga tcaacttgcc aacaagtaaa gctatgacca
     1921 gataaagccc tccaataaga agtaaataga ttgcattgtc tgttgccaga gaatagaggt
     1981 gcgtaaagac agaaaatagt ttttcaatgg ctaagcgaaa tgcaacgacc actaaaccag
     2041 cgacaatgcc aactaaacta ccacgcagaa ccgaatagag gattgattga gaaataaaac
     2101 taacttcttt ccggtgattt tccattggga tttcccttcc tttctatagt atgtatgacc
     2161 aaaaaatagg agcaataagt acttagtaaa gaacctcact cccattcttt tatttatatt
     2221 gctacctgtc caatcagact atttccgata catcttgaat tggagataga ggtcattata
     2281 cattccaagc atctctgctc caagattatc ataaacttcc atcttcttca tcgtttcttc
     2341 tgaaggatag aaggattcgt cgttctgagt ctcctcatcc agcatagcct tggctgcagg
     2401 aattggtgtt gagtagccaa catattctgc attgcgaagc gcattttcag gacgaagcat
     2461 aaaactcata aaggcgtaag ctccatcaat attttttgct gtttttggaa tgaccatgtt
     2521 atcaaaccac aggttagaac cttttgatgg tacaacatag cgcagatttt catttccatc
     2581 taacatttca ctcgcctcac ctgagaacga aacagcaatt gctgccgcat cttgtatcat
     2641 ataacctttt atctcatcag caacaattgc tttgacattt ggagttaaat tataaagatg
     2701 ttcggctgcc ttttcaatct cggtaggatt gttagaattg agactatagc ccagtgattg
     2761 tagaccaaag cccatgactt cacgcacacc atcaattaac atgatattgt cacggtattc
     2821 ctctgaccac aagtcttccc attcctgagg aggattttct accatggttt cattgtaaac
     2881 aatgcccaag gttccccaga aatatggaat agaatagtca ttattcttat caaagctaag
     2941 gcccataaat cgtggatcga tattttctat cccttcaatc ttagacttat ctagcttgat
     3001 taacatattt tcttctgtca tcttagaaat catgtactca gatgggattg tcaaatcgta
     3061 tgttgttcca ccctgcttaa tcttggtgta catcgattca ttggagtcaa aggtctgata
     3121 atctacctga atacctgttt cagcagtgaa ttctgcgagt aattctgggt caatataatc
     3181 accccagtta tagatgacaa gtttatcagt tgtcccttgg gttgaatcag cttctaactt
     3241 ataactaatt ccccataaaa ctaggacaat agctataatt cctacaaaaa atgaatacaa
     3301 tcgtttcatt agttggcctc cttttcacgt gagatgaaat aataacccac taccaataag
     3361 atagagaaaa ggaaaacaag ggttgatagg gcattgattt ccaaagaaat cccttgacga
     3421 gcccgtgagt aaatctctac agataggttt gagtaaccat ttcccgtaac aaagaatgtc
     3481 acggcaaagt catccaagga ataggtaaag gccatgaagt agcctgcaat gatggctggt
     3541 gttaggtatg gcaacatgat ttctttcagc atttgtggct gagttgcccc caaatcataa
     3601 gctgctgaaa tcatatcggc attcatttcc ttcaagcgtg gcaaaaccat caatactacg
     3661 attggaatag aaaaagcaat atgactgagc aatactgaga caaagccaag ctggaaacca
     3721 atcatggtaa agagaattag gaaactcgcc ccaatcatga cgtctggagc taccatcaag
     3781 atattattga cagacaagag tgcattttga aaacgaggtt ttgcctgata tatatagatg
     3841 gcaccgaaag ttccgataat ggtcgcaatc aaagaactca agaaggccaa caagaaggtt
     3901 tgagccagaa tcagcattag tcggctatcg ccaagcatag atgaaaaatg ctctaaggta
     3961 aagcctgtaa agccattcat atctccgcct tcattaaagg cataaaaaat aagatagaaa
     4021 atcggtaagt agagaaggag aaaggcaact gttaagtaga tatttgcaaa tttcttcatt
     4081 atttcttcct ctctttcgtc atccacataa tcaagagcat ggccaaaatc aagaccacac
     4141 ctatggttga acccattccc cagttttgtg ttgtgagaaa gtgttgttct atagctgtac
     4201 caagcgtgat cactcggtta ccgccaatca aacgggtcaa catgaagagg ctcagacttg
     4261 gaatgaaaac cgcctgtaca ccagaacgga caccattcat agaaagagga aaaataactt
     4321 ttgtgaaggt ctgccaagga gttgccccca aatcacgact ggcattgatt aggtttttat
     4381 ccaaatcatc caaggcgtta aagatcggca aaatcataaa cggaatctcg atataggctg
     4441 caacagcaat aaatgagaaa tccgtgaaaa gaatttgctg agctcctaga ccaataaatt
     4501 ctaggaactg gttgatagag ccgtgttgtc caaaaatacc gataaaggca taggctttca
     4561 gtaaaagatt gacccaggtt ggcaagataa tcaacatgag ccagagctgt ctatgcttga
     4621 gtttggtcaa gaaataggct gttgggtagg aaaccaaaag cgtgaccaga gtaataatac
     4681 ctgcgtaaaa aatggagtta aaactcattc gcagataggt catattgggc gagttaaaat
     4741 aggtctggta attggccaaa gtgaaattgc catgaatatc aaagaaagat ttgaagataa
     4801 tcaaggcaac tggagcgagt acaaagagaa agacccatag ggcataggga attgcaaaaa
     4861 gcctagaggt tttcttcatt gcgttcctcc tcaatggcat taatcaagcc atcttctact
     4921 tcttccactt ccacatattc ttcgatacgg gcatcgaatt cttcctctgt ttcattgaga
     4981 cgcatgatat gaatatcttc tggctcaaaa cttagtccaa tcacttctcc gacaatagcc
     5041 ttacgagttg agtgaatcat ccactcatta ccgaggtcgt cataggcgat gatttcatag
     5101 tgaaccccac ggaagagttg agtatccact tttacctgca atttgccttc ctcaggtagg
     5161 gtaatctgca aatcttctgg acggataaca acttcaactt cttcattagg acgcataccg
     5221 ccatcgacag cttcaaagcg tttgccgtta aactcaacca gatagtcttc tatcatacga
     5281 cctggaagga tattggattc accgatgaag gtagcaacaa aatggttgat tggctcgtcg
     5341 taaatgtcca ctggcgtgcc agactgaaca atttcacctt cattcatgac aaaaatccag
     5401 tcactcatgg ccagagcttc ttcttggtca tgggtaacga agacgaaggt aattcctaga
     5461 cgttgttgca attcacgcag ttcgtactgc atttctgttc ttagtttcaa gtccagggca
     5521 gaaagtggtt catctagcaa gacaacgcga ggctggttga taatcgcacg tgcaatagca
     5581 acccgctggc gttgaccacc agacaatttc tgaatggaac gattttcata accagaaagt
     5641 cggaccattt gtaaggcttc tgtcacacgg cgttcaattt cagccttgtc aatctttcgt
     5701 aatttaagag gaaaagccac attttcaaag acagtcatat gtgggaaaag ggcataggac
     5761 tggaaaacag tatggacatc ccgtttattg gtcggaacat cattaatccg ttgaccgtcc
     5821 agataaatat cacctgaact cgcatccaat aaaccagcaa taatgttcaa aattgttgat
     5881 ttccctgaac cagaagctcc taaaagggta taaaatttcc cctcttccaa ttcaaaacta
     5941 atatccttta atacagttgt tccactgtct tcaaatactt ttgaaacgtt cttaaattca
     6001 ataattggct ttttcaattc tcataaattc cttctttttt gtaagagcct gatggctaga
     6061 gtgtatcagc aggatcgccg ataatacgaa cctctctctc cagagtaatt cctgaagatt
     6121 tttcaacaac ttcaattaca tgggcaatca aattttcgta atcagatgct gtaccatttt
     6181 ctatattgac cataaagcca gcgtgttttt cagaaacttc gactccacca attcgataac
     6241 cttttaaacc cgcatccata atcaactgtc ctgcgaagtg accaagtgga cgcttgaaga
     6301 ctgaaccaca agatggatat tccaaaggtt gcttgagctc gcgtaaatgt gtcaaacgag
     6361 ccatttcttg ttgaataacc gtatgatttc ctggcttgag ggcaaatttt gcagacaaaa
     6421 caatcgcacc gttttcctgc aaaatagaag aacggtagcc aaatcgtaac tcacgattgt
     6481 ccaatgtttc gacataacct gctggagtca aaatctgcgc tgaaactaga atgtgtgcca
     6541 cttcacctcc gtaagcacct gcattcatgt agacagcacc accaatgctt cccggaatac
     6601 cacaagcaaa ttcaaatcct gataaagaat ggaaaagtgc gacttttgtt gtttcaatca
     6661 gattggcacc tgcttctgct tcaatggtgt atcctgatac agtaacggag ttaagtttat
     6721 ccatacggat aacaaaacca cgaataccgc catctcggac aatgatatta cttgaatttc
     6781 ctaatacttg ccatggaata ccttcgcgtt tagcaaattc tactatacga acaatctcgt
     6841 aacgattccg cggaaaagct agataatcaa cagctcctcc tacttttgta taggtatatt
     6901 cttttaaagg ctcatcgaat cgaatatcga tgccttctaa ttcaagccta attttatctt
     6961 tcataacctt ctcatttcaa tttaagatat acaggattta ttataccaaa aattacagga
     7021 gaaaacgaat aaaattcaac aaaaatactt tcacaaacca aattaatttg ccccaatatt
     7081 ttgaattgga gaatggaatg
//
LOCUS       DASGBY010000100         7030 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.100, whole genome shotgun sequence.
ACCESSION   DASGBY010000100 DASGBY010000000
VERSION     DASGBY010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7030
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.100"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            48..1949
                     /locus_tag="U1396_001553"
     CDS             48..1949
                     /locus_tag="U1396_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEM5342734.1"
                     /translation="MQTIFGKIVANQSAESVKTYILNQQDAAYKELLLSCQNLLNDIF
                     IFEDNWDMEPCSVGYHLAPLDWTADCHGDEEWTFMLNRQEYLWKLVLAYLVEKDSRYM
                     EQVKRFIFSWIEQVTNWHPKRTSSRTLDTAIRCLSWLNILPFLIDWGGLSEAERSQLL
                     VSIQKQLSYLHSHYRAKDTLSNWGIFQTGAMLLAHAYIGDQVDLVELHHFAHQEIQEQ
                     IQTQILEDGTQFEQSFLYHVEVYKLLLGLAFSLPDYRKQWTPILKKMADYVLQMTGPD
                     GKSVALGDSDVHCTSDILQMTAIFFEDGTYLVDNSKLDLGVLFLVGENGLRIFEHLTA
                     QPNSSGGQHFSESGHSIVKEVDSYLCFKAGPVGSAHSHSDQNSLCFYHKGQPIVIDSG
                     RFSYRECEERYLLKSAWAHSTCILDDNAPEQIKGSWEYDTYPQFISHSYKGVERCHWM
                     QGIYQAQTSQGLSYWHKRQLLMVGGDLLLIVDSVDCSGQHELISQLILDERVKIGEER
                     LNDLRLYSQKDFEIQKTVRSPRYNQLVETNKLVKKESFQDRLVTFTLLADEAIRVKQL
                     PVYQTDYHLIESGLAFSCQGKGLNILLVVSDNDIYKGEKLLQVAGYKLRGKCLVVDRD
                     KRQVVRLKN"
     gene            2045..3046
                     /locus_tag="U1396_001554"
     CDS             2045..3046
                     /locus_tag="U1396_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000412458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5342735.1"
                     /translation="MSEKFTIKDIAELAQTSKTTVSFYLNGKYEKMSKETRERIERVI
                     RETDYKPSVVARSLNSKNTKLIGVLIGDITNTFSNQIVKGIEEEAHKSGYQVIIGNSN
                     YNQESEDKYIESMLMLGVDGFIIQPTSHFRKYSRIIEDKKKHMVFFDSQLYEHRTSWI
                     KTNNYDAVYDATQLCVENGYQKFILITADISRLSTRIERATGFMDALLDCKQSYQDLT
                     IADENTDIEEIKRFLQGVVNPQEKTLVFVPNCWALPLVFNAMKELKYDFPQVGLLGFD
                     NTEWTNFSSPTISTIVQPAFEEGCQATRMLINQIEGGNQVGRQQVLDCTVHWKDSTF"
     gene            complement(3482..4441)
                     /gene="nrdF"
                     /locus_tag="U1396_001555"
     CDS             complement(3482..4441)
                     /gene="nrdF"
                     /locus_tag="U1396_001555"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HEM5342736.1"
                     /translation="METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDW
                     RKLTAEEKDLVGKVFGGLTLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAK
                     SYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIINEIYETGTPLEKKVASVFLETFL
                     FYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLR
                     DWMYDLLYQLYENEEGYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLFPDSADD
                     VNPIIMNGISTGTSNHDFFSQVGNGYLLGEVEAMTDDDYLYGL"
     gene            complement(4571..6730)
                     /gene="nrdE"
                     /locus_tag="U1396_001556"
     CDS             complement(4571..6730)
                     /gene="nrdE"
                     /locus_tag="U1396_001556"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000523276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HEM5342737.1"
                     /translation="MSLKELGDVSYFRLNNEINRPVNGQIPLHKDQEAVKTFFKENVL
                     PNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEFIIKIDQFLKDQNFRFKSFMAAYKF
                     YNQYALKTNDGAYYLESMEDRVLFNALYFAEGNEELALNLANEMIHLRYQPATPSFLN
                     AGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGY
                     EGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKKENADEKVR
                     VKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDITEKYDELVANPRI
                     RKTKIKARDLETEISKLQQESGYPYVINIDTANRSNPVDGKIIMSNLCSEILQVQTPS
                     VINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDFGRSVRTMTRALTYVTDHSHISAVPS
                     IEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNYWTLVESNNIAR
                     ERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSGQDWADLREKVK
                     ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYPAAGLATETI
                     PFYKSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLS
                     ILRNYAFNKGIKSIYYIRTFTDDGEEVGANQCESCVI"
     gene            complement(6763..6981)
                     /gene="nrdH"
                     /locus_tag="U1396_001557"
     CDS             complement(6763..6981)
                     /gene="nrdH"
                     /locus_tag="U1396_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HEM5342738.1"
                     /translation="MVTIYSKNDCVQCKMTKKFLDQHSVDYKEINLDEQPEFIDHVKV
                     LGFSAAPVIETENDVFSGFQPGKLKALV"
BASE COUNT         2061 a         1302 c         1580 g         2087 t
ORIGIN      
        1 tgcccagcct ctcttctttt ggagaagcga tagagaaagg acttgttatg caaacaatat
       61 tcggcaaaat agtagccaat cagtcagcag agtcggtcaa aacctatatt ctcaatcaac
      121 aagatgcagc ttataaagag cttctccttt cttgtcaaaa tttattaaat gatattttta
      181 tctttgaaga caattgggat atggaacctt gttcagtcgg gtatcatctt gctcctcttg
      241 actggacagc cgactgccat ggggatgagg aatggacctt tatgctcaat cggcaggaat
      301 acttgtggaa attagttttg gcctatctgg ttgaaaaaga ttcgcgctac atggagcagg
      361 ttaaacggtt tatctttagt tggatagaac aagtgacaaa ttggcatcct aaaagaacga
      421 gcagtcgcac cttagatacg gctatccgct gtctaagctg gctcaatatt ctcccatttt
      481 taattgattg gggcggacta agtgaagctg agcgtagcca actgttagta tccattcaaa
      541 aacaattatc ttatcttcac agtcattacc gtgccaaaga tacgttgagc aattggggaa
      601 ttttccagac tggcgcaatg ctcttggccc atgcttatat cggtgatcag gtggatttag
      661 tagagcttca ccattttgct catcaggaaa tccaagagca aattcaaact cagatattgg
      721 aagatggaac tcagtttgag cagtcttttc tctaccatgt ggaagtttat aaactcttgc
      781 taggactagc tttcagcttg ccagattatc gaaaacagtg gacacctatt ttgaaaaaga
      841 tggcagacta tgtcttacag atgacgggac cagatggcaa aagtgtggct cttggcgata
      901 gcgatgttca ttgtacttct gacatcttac agatgactgc gattttcttt gaagatggca
      961 cctacctagt agataattcc aagctagatt taggcgttct cttcttggtc ggagaaaatg
     1021 gcttgcgcat atttgaacac ttgaccgctc aacccaactc gtcaggggga cagcattttt
     1081 ctgaatcagg tcacagtatt gtcaaagaag tggacagcta tttatgtttc aaggccggtc
     1141 ccgtgggaag tgcccacagc cactctgacc aaaatagctt gtgcttttac cataaaggac
     1201 aaccaatcgt aattgacagt ggtcgtttca gctaccgtga atgcgaggag cgctacttgc
     1261 ttaaaagtgc ttgggctcac agcacttgta tccttgatga caatgctcca gagcagataa
     1321 aaggttcatg ggaatatgac acgtatcctc agtttattag tcacagttat aagggggttg
     1381 aacgctgtca ttggatgcag ggcatttatc aggctcagac cagccaaggc ttgtcttact
     1441 ggcataaacg acagctcctt atggttggag gcgatttatt gctgatagtg gatagcgttg
     1501 attgctcagg ccagcatgag ttgatcagtc aattgatttt agatgaaaga gtcaagattg
     1561 gagaagagcg gttaaatgat cttcggctat atagtcaaaa ggattttgaa atccagaaaa
     1621 ccgtgcgttc tcctcgatac aaccaactag tagagaccaa taaactggtc aaaaaagaga
     1681 gttttcaaga tagattagtt acatttactc tattagcaga tgaagcaatt cgtgtcaagc
     1741 aattgccagt ttaccaaaca gactatcatt tgatagaaag tggtttggct tttagctgtc
     1801 aaggaaaggg actgaatatt ctgttagtgg tttctgataa tgatatatat aagggagaga
     1861 aattgcttca agtggctggt tataagttga gaggtaagtg cttagtagtg gatagggata
     1921 agagacaagt tgtccgactc aaaaattaga agggacagaa aaaatacagt catttctgtg
     1981 caaaataact gataaagtac ggatagtatg atagaataaa gtaactaaag gaggtatcgg
     2041 taaggtgtca gagaagttta ccatcaaaga tattgcagaa ctggctcaga cttcaaaaac
     2101 aacagtttcc ttttacttaa atggtaaata tgaaaagatg tccaaagaga cacgcgaaag
     2161 aattgagaga gtcattcgcg aaacagacta taaacccagc gttgttgcgc ggagcctaaa
     2221 ttccaaaaat actaagttga ttggagtatt gattggtgat attacaaata cattttccaa
     2281 tcaaattgtc aaaggtatag aagaagaagc gcataagagt ggctatcaag ttatcatcgg
     2341 aaacagcaat tacaatcaag aaagcgaaga taagtatatt gagagcatgc tgatgttggg
     2401 tgtagatggt tttattattc agccgacatc gcattttaga aaatattcgc gcattattga
     2461 ggataagaaa aagcatatgg ttttctttga tagtcagctt tacgaacacc gtaccagttg
     2521 gattaagaca aataattatg atgctgtcta tgatgcaact caactatgtg tagaaaatgg
     2581 ttatcaaaaa tttattctta ttacagctga cattagtcgc ttaagtacac ggattgaacg
     2641 agctacaggg tttatggatg ctctgttaga ttgtaaacaa agttatcaag atttaacaat
     2701 tgcagatgaa aatacggaca tagaggaaat taaacgtttt cttcaagggg tggtaaatcc
     2761 tcaggaaaag accctagtat tcgttccgaa ttgctgggcg ttacccttag tttttaatgc
     2821 tatgaaagaa cttaaatatg actttcctca ggttggtctt ttggggtttg acaatactga
     2881 atggacaaat ttttcatccc ctactatctc taccattgtt caacccgcct ttgaagaagg
     2941 gtgtcaggca acaaggatgc tgatcaatca gattgagggc ggaaaccaag tgggacgaca
     3001 acaggtttta gattgcacag ttcattggaa agattctaca ttctaagtta agtcaaattt
     3061 tacttcttag gaagaggagc agaacgaagt agaatattct gattgagagc tcactgaaac
     3121 cctccttgaa tcgcctaata tatacaaaaa ataggaattt tcccttaact ggtgggagaa
     3181 ttcctatttt tatgccaatc tcatcgagat gatatattaa cattatatac gattttaaac
     3241 tcaacagatt tctatagtct tttagtacta ggcaatgagc cgcagacagt actggagtgc
     3301 cgcacagttg attaggttgg atttagagtg taaaacacga acaaatccgc caatcaacca
     3361 ctgcgctgag atgttgacac gaactctaag aagtggcgct gggctttttg cccagcctca
     3421 cgtcaaagat aaacaaaatg actataaaac ggaaaaatag aaatgatatt tttcctaaga
     3481 tctacaaccc atataaataa tcatcatctg tcatagcttc cacttcacca agaagatagc
     3541 cgttaccgac ttgggagaag aagtcgtggt tagatgtacc ggttgagata ccgttcatga
     3601 tgattgggtt gacatcatct gctgaatctg ggaagagtgg atcctgaccc aagttcatga
     3661 gggccttgtt ggcattgtaa cgaaggaaag tcaagacttc ctcagtccag ccgactgcgt
     3721 catagaggga gcgtgtgtag ccttcttcat tttcgtaaag ttggtagagc aggtcgtaca
     3781 tccagtcgcg gagtttatct tgttcttcct cggacaattc attgaaacca agttggaact
     3841 tgtaaccgat gtaggtaccg tgcacagact cgtcacggat gatcagcttg atgatttctg
     3901 caacgttggc cagcttgttg ttaccaaggt agtagagtgg cgtgaagaaa ccagagtaga
     3961 agaggaaggt ttctaggaat acgctggcta ctttcttttc aagaggtgta cctgtttcgt
     4021 agatttcgtt gataatcttt gccttgcgtt gcaaatattc gttgctgttg gtccattcaa
     4081 agatgtcttc aatctcagac ttggtgttca aggttgagaa gatagaagag taagacttgg
     4141 catggactga ctccatgaat tggatgttgt tgtaaacagc ttcttcgtgc ggtgtacgaa
     4201 tatcgttgcg gagggcttgg acacctgttt cagattgaag ggtatccaag agggtcaatc
     4261 caccaaagac cttaccaacc aggtcttttt cttcagcagt aagtttacgc cagtcatcca
     4321 agtcgtttga taaaggaata cgtgtatcga gccagaattg ctcggtcaac ttttcccaag
     4381 tagacttgtc gataacatcc tcaatggcgt tccagtttat ggctttgtag taggtttcca
     4441 tcatattctc tttctttttc ttatacttca aatattatat cacaaataga tagtagcctg
     4501 taaaaaaatc ccctaaaagg gattttaatc gattgcttat tagttgcttc acatcgtgaa
     4561 cgatagtgtc ttaaatcaca caactttcac attggtttgc gccgacttct tcgccgtcat
     4621 cggtaaaggt acggatgtag tagatagact tgataccttt gttgaaggcg tagttacgaa
     4681 ggatagagag gtcacgtgta gtttgtttgt tctctttttt ccattcatag agttcttttg
     4741 ggagctcgct gcgaaggaaa agagtgagtg acaacccttg gtcgacgtgt tctgttgcgg
     4801 cagcatagac atcgataacc ttccgcatat ccatgtcata ggcagatttg tagaatggaa
     4861 tggtttctgt tgccaagcca gctgctggat agtagatttt accgattttc ttctcttggc
     4921 gttcttcaat ccgttgtgtg attgggtgaa ttgaagcaga aacgtcgttg atatagctga
     4981 tagatccatt tggagcaaca gctaagcggt tttgatgata gagaccgtct gcttttactt
     5041 tttcgcggag gtcagcccaa tcttgtccac ttggaatgaa aatgccttca aaaagttctt
     5101 taacacgctc ggattgtggt tggtagtcac ctgtcacgta tttatcgaaa taagtgccgt
     5161 ctgcatattt tgatttttca aagttatgga aagtagcttt gcgttcgcga gcaatgttat
     5221 ttgattctac caaggtccaa tagttaagga gcatgaagta gatgttggta aattctacgg
     5281 cagtttttga accgtaatca atcaagttct gagctaagta agaatgaagt cccatagctc
     5341 caagaccgat agaatgtgcc tgactgtttc ctgcttcaat agatggtaca gctgaaatgt
     5401 gtgaatgatc tgtgacataa gtcaaagcac gagtcatggt acggacagaa cgtccaaagt
     5461 caggcgattt catcaagttg acaatgttgg ttgaaccaag gttacatgat acatctgtcc
     5521 ccattgtcaa gtattcctga gagtcattga tgacgcttgg tgtttgaact tgaaggattt
     5581 ccgaacagag gtttgacatg ataatcttgc cgtcaacagg gttgctacgg ttagctgtat
     5641 cgatgttgat aacgtatgga tagccagact cttgttggag tttggaaatt tctgtttcca
     5701 agtcacgtgc cttgattttt gtcttacgaa tgcgagggtt cgccaccaat tcatcgtatt
     5761 tttctgtgat gtcaaggtag ctataaggga caccgtattc caactcaact gagtatgggc
     5821 tgaagaggta catatcttcg tttttacgtg ccaattcgta gaatttatca ggaacggtga
     5881 taccgagtga taaggtcttc acgcgaactt tctcatcggc attttctttc ttagtcgaaa
     5941 ggaaggaaat aatatctggg tggaaaacat caagataaac gacaccagcc ccttggcgtt
     6001 gcccaagctg gttagaatag gagaagctgt cttcgaagag tttcataaca ggaacaaccc
     6061 cagaagctgc cccctcatag cccttgattg gagcacctgc ctcacgcaag ttgctaaggg
     6121 aaataccaac accaccaccg atacgggaca attgcagagc agagttgata gaacgtccaa
     6181 tcgagttcat atcgtcagtg acctggatga ggaaacaaga caccaactca ccacgacggg
     6241 cacggcctgc gttgaggaaa gacggtgttg caggctggta acgaagatga atcatttcgt
     6301 tggccaggtt tagtgctaat tcttcgttgc cttcagcaaa atacaaggcg ttgaagagaa
     6361 cacggtcttc catactttcc aagtagtaag ccccgtcgtt ggttttgagg gcatactgat
     6421 tatagaactt gtaggctgcc atgaaagact tgaagcggaa gttttggtct ttcaagaatt
     6481 gatcaatttt gatgataaat tctgggctat actggtccaa aaattctttt tcaagatagt
     6541 tttcttctaa tagataggca atcttgtcta aaatactatc aaattgcttg gtatttggga
     6601 ggacattttc tttaaagaag gtcttaaccg cttcttggtc cttgtggagt gggatttgac
     6661 cattaacagg acggttgatt tcgttattta aacggaagta ggacacatcg cctagctctt
     6721 ttaaactcat agtcgcaatc tctttctata aacagtaggg agttaaacca aggcttttag
     6781 ttttcctggt tgaaaacctg agaaaacatc attttcagtt tcgataacag gtgcagctga
     6841 gaaaccgaga acttttacgt gatcgataaa ttctggctgt tcatctagat tgatttcttt
     6901 ataatctaca ctatgttggt ccaagaattt cttggtcatt ttacactgta cacaatcatt
     6961 ttttgaatag atcgttacca ttcaatttct cctttgtcca tgagggatta ataaaaaatc
     7021 ccaattttgt
//
LOCUS       DASGBY010000101         6738 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.101, whole genome shotgun sequence.
ACCESSION   DASGBY010000101 DASGBY010000000
VERSION     DASGBY010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6738
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.101"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            19..819
                     /locus_tag="U1396_001558"
     CDS             19..819
                     /locus_tag="U1396_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5342739.1"
                     /translation="MKKILALAATVLAGLTLVACSSTSSQSALDKIKEKGTLVVATSP
                     DYAPFEFQALVDGKNEVVGADIMLAQKIADELGVKLEVSAMSFDNVLSSVQNGKADIA
                     IAGLSYSEERAKVFDFSESYYQISDVLLIKKDSANSLTSIDAMSGKTLAVQKGSTQES
                     YAQENISQANLISLTLMGEAVNELKSGKVDAILMDSPVAAGYVSQNSDLAVASVEFPT
                     IDENSKVIALPKGSTELKTAIDKVIAEVKASGEFDTFLEKAATYTSVE"
     gene            complement(1093..2931)
                     /gene="glgB"
                     /locus_tag="U1396_001559"
     CDS             complement(1093..2931)
                     /gene="glgB"
                     /locus_tag="U1396_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HEM5342740.1"
                     /translation="MTEFTDLDLYYMNAGEHTTLYEKMGAHIIKERNKIIGTQFRVYA
                     PNAREVFLVGNFNEWQRSHSMEREIDGVFQLYVDGLKSLEDYKYLIITHDGREIYKAD
                     PYAFFSQVRPDTASTTYNSRYKFKDDIWMYNRVNYDFKEQPVSIYEVHLGSWKQKFAN
                     KNEGGAPVEAFNSYKEITPLLIEHIRENNYTHIELLPITEHPLDASWGYQVTGYYSPT
                     SRYGKPDELKYLVDQCHQAGIGVILDWVPLHFCKDAHGLYQFDGSWLYEYSYEQDREN
                     HQWGTANFDLGKGLTRSFLLSNLKYWLEYFHFDGIRVDALSYLLYWRGETDEDKINHA
                     AIDFIKRVNAMVHTDYKGVLMIAEDSSSFPKVTHSLENGGIGFDMKWDLGWMNDTLKF
                     VERPAIYRKYHSNEITFGMYYNQNEQFLLPLSHDEVVHGKHSIIEKMNGDYEDKFHLA
                     RVYYSFYFAHPGKKLLFMGNEWGHIREWHEYTEMDWGLLQFPIHHSFYQMMKTLSTFY
                     KEHDAFWKYDYQAYEKGFNWVKIDEEASLYAFSRTSDEQEILTIHNFNDQELFDVHLD
                     LPADSEYKLVFSSNAIPMDTFSLYPDENGARITVPRLTSFYLERVK"
     gene            complement(3004..4449)
                     /gene="glgA"
                     /locus_tag="U1396_001560"
     CDS             complement(3004..4449)
                     /gene="glgA"
                     /locus_tag="U1396_001560"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HEM5342741.1"
                     /translation="MTKKSVLFVASEGLPFIKTGGLADVIGSLPKELVKQGLDVRVVL
                     PLYKKIAINNHADFDYVSSFDVRAGDIQSMANVYSQVVDGVTFYFIEHRDFFERDELY
                     GYDDDAMRFGYFQHATCRLLEALHFFPDVMHTHDWHTAALPFLCRTFYSYREEFCNIK
                     HVFTIHNLAFQGIFHKQALWSALGMDYSYYLDGIARFHDECISFMKLGILYADKVTTV
                     SETYAREILTEEFGENMQHVLELRKYDLVGIVNGIDYDSWDSQTDQYLVRNYSLETIE
                     SKKANKLALQAQFALPQDENVLLIGIVSRLTWQKGFYLLTEVLGHLLQAHVQFVILGN
                     GEEDIENAFNHFKHAYPDKFAFYRGYNEPLAHQIYAASDLFLMPSMFEPCGISQLISM
                     QYGTLPLVRETGGLVDTVAPYNMSTKEGTGFSFGGRDAYNMRQVYDLALQTYYDRPDD
                     WYAMVEQAMKRDFSWTASAEKYIWLYREISG"
     gene            complement(4458..5573)
                     /gene="glgD"
                     /locus_tag="U1396_001561"
     CDS             complement(4458..5573)
                     /gene="glgD"
                     /locus_tag="U1396_001561"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase subunit
                     GlgD"
                     /protein_id="HEM5342742.1"
                     /translation="MLRNTLGIVNIEGNNVHFGDVMKHRGVQAFGFLGRYRLIDFALS
                     NMSNSGITEFQVYMPAEMRSTIQHVGTGKHYNINSKRGTLRLLNSATDPNSVYRHDIN
                     AFTENIHYIEKSTKDYVLVAPSYFIYSQDFSKVMDDHIATDADITVLYKNVSDAKENF
                     IGCQTLKFGEDRRVVAFEENHGKYKNRPVSLEAYIMKRTTFIDLIKRANKVSSLYWLK
                     DILRDTVDQYKIMGYAHRDYVACINTTASYFNTQIELIDQDTRKLLFKHDWPIHTQTS
                     DSSPCLYGPLAEVKRSLISNGANINGQVENSVIDRDVIIEEGVVIKNSIILNGVTIKS
                     GANIENAIIDKATKIIHPIDIKGSETSPSYLKPHQII"
     gene            complement(5586..6713)
                     /locus_tag="U1396_001562"
     CDS             complement(5586..6713)
                     /locus_tag="U1396_001562"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEM5342743.1"
                     /translation="MAQNKMLAMILAGGRGTRLEGLTKKVAKPAVAFGGKYRIIDFPL
                     SNCANSGIDIVGVLTQYEPVLLNSYVAQSQRWGLDVQGSGVFVLPPSEKIEGFGLYKG
                     TADAITQNIDFIDLHDPEYVLILSGDHIYKMNYDKLLDTHIQKKADATIAVIEVPIKE
                     ASRFGIMNTDEDYRIEEFEEKPENPKSNLASMGIYIFTWKTLKKYLQEDDKLDTSSHD
                     FGHDIIPKYLEDGRTLIAHPFRGYWKDVGTVNSLWESNMDLIDHAGDLDLSDRSWRIY
                     SEDKGSPAQVIGATATVKSAYIDKGAVIDGTVEHSVISTDVQVNQNAVVKNSVVLPGA
                     IIGEGVELDYVIVAENIKIADGVKLTGDIDHILLIDKNVTK"
BASE COUNT         1981 a         1329 c         1383 g         2045 t
ORIGIN      
        1 agaaggtatt taggaaatat gaaaaaaatc ttggcattag cagcaacagt tttagcagga
       61 ctgacattgg tagcttgttc ttcgacatca tcacaatctg cattagataa aattaaagaa
      121 aaaggaacat tggtagtggc aactagtcca gactatgctc cattcgagtt tcaggcacta
      181 gttgatggaa agaatgaagt tgttggtgca gatattatgt tggctcaaaa aatagccgac
      241 gaacttgggg tcaagcttga agtttcagca atgagttttg acaatgtatt gtctagcgtt
      301 caaaatggca aagctgatat tgcaattgct ggtctatctt attcggaaga gcgtgcaaaa
      361 gtttttgatt tctctgaaag ttactatcaa atttctgatg tattacttat caaaaaagat
      421 agcgctaatt cactcacttc aattgatgct atgagcggga aaactctcgc ggtacaaaag
      481 ggttcaacac aagaatccta cgcacaagaa aacattagtc aagctaacct gatttcttta
      541 accttgatgg gtgaagccgt aaatgagctc aaatcaggaa aagttgatgc tattttaatg
      601 gattctccag ttgctgctgg ttatgtttca cagaattcag atttagccgt tgcatccgtt
      661 gaatttccaa cgattgatga gaattcgaaa gtcattgctt tgccaaaagg tagtacagaa
      721 ctaaaaactg cgatagacaa ggttatcgca gaagtaaaag caagtggtga gtttgatact
      781 ttccttgaga aagctgcaac atatacaagt gttgaataag agaaacgaga ggctgggtaa
      841 aaagtccaaa gccacttctc agagttcgtg tcaacatctc agcgcagtgg ttgattggca
      901 gatttgttcg tgtttcacac tccaaatctg acctaatcaa ctgtgcgggg gtgggaagac
      961 gaactctttt ttgactagtt gagttctttc ccactccctt ttgcatgcaa aaaagaatgg
     1021 agtaagtgag ctacacccaa aaagttagac agaaaatttg ggtcggatca atactccatt
     1081 ttttatagat aattatttca cacgctctag ataaaaactg gtcaaacgtg gtacagtaat
     1141 tctagctcca ttttcatcgg gatagaggct aaatgtgtcc attggaatag cattagatga
     1201 gaagacaagt ttatattcgc tgtcagctgg caaatccaag tgtacatcaa atagttcttg
     1261 atcattaaag ttatgaatag tcaagatttc ttgctcatca ctagtgcgag aaaaagcata
     1321 caggcttgct tcttcatcta tttttaccca attaaatcct ttttcatagg cttggtagtc
     1381 atatttccag aaagcatcat gttctttata gaaagtagat aatgttttca tcatttgata
     1441 gaaagaatgg tggattggaa attgtagcag tccccagtcc atttctgtat attcgtgcca
     1501 ttcacggata tgaccccatt catttcccat gaagagtaat ttctttccag gatgggcgaa
     1561 gtaaaagctg tagtagactc gagccagatg gaacttatct tcgtagtcgc cattcatctt
     1621 ctcgataatg gagtgcttcc catgaacaac ttcgtcgtgc gaaagtggta gtaagaattg
     1681 ctcgttttgg ttatagtaca taccaaaagt gatttcattt gagtgatatt ttcgataaat
     1741 agcagggcgt tccacgaatt ttagtgtatc attcatccag cccagatccc atttcatatc
     1801 aaatccaata ccgccatttt ctagagaatg tgtgacttta gggaagcttg aagagtcttc
     1861 agcaatcatc aggactccct tatagtcggt atggaccatg gcattgacac gtttgataaa
     1921 gtcaattgcg gcatgattta tcttatcctc atctgtttca ccacgccaat agaggagata
     1981 agatagtgca tcaacacgga tgccatcaaa atggaaatat tccaaccagt attttaaatt
     2041 ggaaagaagg aaagaacgag tcagcccttt tccaaggtca aaattagcag tcccccactg
     2101 gtggttttca cggtcttgtt cgtaggagta ttcgtatagc caactgccat caaactggta
     2161 gagcccatga gcatctttac agaaatgaag tggtacccag tcaagaatca ctccgattcc
     2221 tgcttggtga cattggtcaa ctaaatactt aagttcatct ggcttgccat agcgactagt
     2281 tggactgtag tagcctgtta cctgatagcc ccaagacgca tcgagaggat gctcggtaat
     2341 tggcaataat tcaatatgtg tgtagttatt ttccctgata tgttcgatga gaagtggagt
     2401 aatttcctta taactattga aagcttctac aggagctcct ccttcatttt tattagcaaa
     2461 tttttgcttc cacgaaccta agtgcacctc gtagatggat actggctgtt ctttaaaatc
     2521 atagttaaca cgattataca tccagatgtc atctttgaat ttataacgcg aattgtaggt
     2581 tgtagaggca gtgtctggac gaacttggct gaaaaatgca taagggtcag ccttatatat
     2641 ttcacgccca tcgtgtgtga taatcaggta tttataatct tcaagggatt ttaatccatc
     2701 tacataaagt tgaaacactc catcaatttc acgctccata gagtgactgc gttgccactc
     2761 gttaaagttg ccaactaaga atacttctct ggcatttggg gcatagacac gaaattgggt
     2821 tccgataatt ttgtttcgtt cttttataat gtgagcaccc attttttcgt aaagagtggt
     2881 atgctcacca gcattcatat aatataaatc taggtcagta aattctgtca tagcaatctc
     2941 cattgccgaa aaggagtgga ctagggtcac actccgattc agtttatttt ttcatcttat
     3001 ttcctaacca ctaatttccc ggtatagcca gatgtatttc tctgccgaag ctgtccaact
     3061 gaaatcacgc ttcatagctt gttcaaccat ggcataccag tcatcgggac ggtcatagta
     3121 ggtttgaagg gctaaatcat agacttgtcg catattgtaa gcgtcacgcc ctccaaagct
     3181 aaaaccagtt ccttctttgg tagacatatt gtatggtgct acagtatcaa ccaagccacc
     3241 tgtttcacgc actagaggga gtgttccgta ttgcattgaa atcaactggc taatgccgca
     3301 tggttcaaac atagaaggca tgaggaagag atcacttgct gcataaattt gatgggcaag
     3361 tggttcattg taaccacggt agaatgcaaa tttatcagga taagcatgtt taaagtgatt
     3421 aaaggcattt tcaatgtctt cctcaccatt gcctaagata acaaattgga catgggcttg
     3481 aagaagatgg ccaagtacct cggtcaagag gtagaaccct ttttgccatg tcaaacgaga
     3541 gacgatacct atcaatagga cattctcatc ttgtggaaga gcaaattgtg cttgcagggc
     3601 cagtttatta gcctttttac tttcaatcgt ttcaagacta taatttctca caaggtactg
     3661 atctgtttga ctatcccaac tgtcatagtc gataccattg acaataccaa ccaagtcata
     3721 tttgcgcaac tctagtacat gctgcatgtt ttcgccgaat tcttccgtta ggatttcgcg
     3781 agcataagtt tcagaaactg tagtaacctt gtcagcgtat aggataccaa gcttcatgaa
     3841 gctgatacat tcatcatgaa aacgtgcaat accatccaaa tagtagctat agtccatgcc
     3901 aagcgctgac caaagtgctt gtttgtggaa aattccctga aaagccaagt tatgaatagt
     3961 gaatacatgc ttgatattgc agaattcttc gcggtagcta tagaaagtac ggcaaaggaa
     4021 tggaagggca gcagtgtgcc agtcatgtgt gtgcatgaca tccgggaaga aatgaagtgc
     4081 ttctaacaga cgacatgtag catgttggaa atagccaaaa cgcatggcat catcgtcata
     4141 tccatatagt tcatcgcgtt caaagaaatc gcggtgctca ataaaataga atgttactcc
     4201 atcaacaacc tgactgtaaa catttgccat agattggatg tcgccagccc gcacatcaaa
     4261 acttgatacg taatcgaaat cagcatggtt attgatagca attttcttat agagaggaag
     4321 taccactcgg acgtccaacc cctgttttac caattcttta ggtaaggaac cgattacatc
     4381 ggccaaacca ccagtcttga tgaatggaag tccttcagat gctacaaaga gaacagattt
     4441 ttttgtcatg ttagctccta aatgatttgg tgtggtttca agtatgaagg cgaagtttcg
     4501 cttcccttga tgtcaattgg gtgaataatt ttagttgctt tatcgataat tgcattttca
     4561 atattcgccc cactcttgat tgtcacgcca ttgagaatga ttgagttttt gataacaaca
     4621 ccttcttcaa tgataacatc gcggtcaatg actgaatttt cgacttgacc attgatattc
     4681 gctccatttg aaattaggct acgtttgacc tctgccaatg gaccatacaa acatggtgag
     4741 ctatcacttg tttgggtatg gattggccaa tcatgtttga agaggagttt gcgggtatct
     4801 tggtcaatca attcaatttg agtattgaag taggaagctg tcgtattgat acatgcgaca
     4861 taatcacgat gtgcatagcc cataatcttg tactggtcaa ctgtatcacg taaaatatct
     4921 tttaaccagt agagagacga cactttgtta gcacgtttaa tcaagtcgat aaatgtagtc
     4981 cgtttcataa tgtaggcttc aagggaaacg ggacggtttt tatatttacc atggttttcc
     5041 tcaaaagcta cgacacgacg gtcttcacca aatttgagag tttggcagcc gatgaaattt
     5101 tctttagcat ctgaaacgtt tttataaaga acggtaatat cagcatccgt tgcaatatgg
     5161 tcatccatga cttttgaaaa atcctggcta tagatgaagt aagatggagc aactagcaca
     5221 taatcttttg tagacttttc gatgtagtgg atgttttctg tgaaggcatt aatatcgtga
     5281 cgatagacac tatttgggtc tgttgcgcta ttgagcaagc gaagggtacc gcgtttgctg
     5341 ttgatattat agtgtttccc tgtaccaacg tgctgaattg ttgaacgcat ttcggcaggc
     5401 atgtatactt ggaattctgt aattccagag tttgacatat tggatagagc aaagtcaatt
     5461 aggcgataac gacctaagaa accgaaagct tgtacgccac ggtgcttcat cacgtcacca
     5521 aaatgtacgt tgtttccttc aatatttaca attccgagag tatttcttag catagcagtc
     5581 ctttcttact tagtcacatt cttgtcaatc aagaggatat ggtcgatgtc tcctgtgagt
     5641 ttaactccgt cggcaatttt aatattttca gcgacgatga cgtagtcaag ttcaacacct
     5701 tcgccgataa tagcaccagg caggacgaca gaatttttta ctacggcatt ttggttgacc
     5761 tgtacatctg ttgaaataac agaatgttct actgtaccat caataactgc ccctttatca
     5821 atataggcag atttaacagt tgcagtcgca ccaatcacct gagcaggtga gcccttgtct
     5881 tctgagtaga ttctccatga gcggtcagaa aggtccaaat ctcccgcgtg atcaatcaag
     5941 tccatattgg attcccagag gctgttaacg gtacctacgt ctttccaata accacggaat
     6001 ggatgggcaa tgagagtgcg gccatcttct aagtatttcg gaatgatgtc gtgcccaaaa
     6061 tcgtgagatg aagtgtccaa tttgtcatct tcttgaaggt actttttcaa ggtcttccaa
     6121 gtgaagatat agatacccat tgatgctaaa ttgctcttag gattttctgg tttttcttca
     6181 aattcttcaa tacggtaatc ttcgtccgta ttcatgatac caaaacgtga agcttctttg
     6241 atcggaactt cgataaccgc aatcgtggca tctgcttttt tctgaatatg tgtatcaagg
     6301 agtttgtcgt agttcatctt atagatgtgg tcaccagaca aaatcaatac gtactctgga
     6361 tcgtgaagat caatgaaatc aatgttctgt gtaatagcgt cggctgtacc tttgtaaagt
     6421 ccgaaacctt cgattttttc actcggtggt aatacaaaga cgccagatcc ttgtacatca
     6481 agtccccaac gttgagactg tgcaacgtat gagttcaaga gaacaggctc atactgagtc
     6541 aaaactccga caatatcaat acctgagttg gcacagttac tgagaggaaa gtcaataatg
     6601 cggtactttc cgccaaatgc gaccgctggt ttggcgactt tttttgtcaa cccttctaga
     6661 cgtgttccac gtccaccagc aagaatcata gctaacattt tattttgagc catctaacca
     6721 ctccttaata tatatgat
//
LOCUS       DASGBY010000102         6737 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.102, whole genome shotgun sequence.
ACCESSION   DASGBY010000102 DASGBY010000000
VERSION     DASGBY010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6737
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.102"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..609)
                     /gene="nth"
                     /locus_tag="U1396_001563"
     CDS             complement(<1..609)
                     /gene="nth"
                     /locus_tag="U1396_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000244460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEM5342744.1"
                     /translation="MVLSKKRARKVIEEIIALYPDAKPSLDFRNHFELVCAVLLSAQT
                     TDAAVNKATPGLFEAFPTPQAMAAAQVKDIEPYISRLGLYRNKAKFLKECAQQLLDRH
                     DGIVPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICKHHDIVKKSATPL
                     ETEKRVMEVLPPELWLPAHQAMIYFGREVCHPKNPECEKFPQL"
     gene            707..1558
                     /locus_tag="U1396_001564"
     CDS             707..1558
                     /locus_tag="U1396_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEM5342745.1"
                     /translation="MDLQELCRKVIQARPRNSHKGSYGRVLLIGGLYPYGGAIIMAAL
                     ATVNSGAGLVTVATEKDNIPALHSHLPEAMAFSFDDQALLISSLENADLVLIGPGFGE
                     NSRAEQLLDFVFEHLSDQQILVLDGSALTLVAKQNRKNFPCKQVILTPHQKEWERLSS
                     IPIADQTSQRNLEALQSFQENTILVAKSSATQILKTQPNQVTPIGAGGPYQATGGMGD
                     TLAGMIAGFAVQFPHVQLYERILVATYLHSYIADQLAQDYYLVKPTDVSRNIQKTMLQ
                     FQTQTTA"
     gene            complement(1740..6485)
                     /locus_tag="U1396_001565"
     CDS             complement(1740..6485)
                     /locus_tag="U1396_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM5342746.1"
                     /translation="MKKKETFSLRKYKIGTVSVLLGAVFLFAGAPSVAADELTSLVET
                     KVEATVPDVIVSESASESPVVEELVDTSVEATPTDVTTTDNVEETLGSEALENITNTE
                     VEATQPAVETPAISEKKVEEDEKLAVADETTAITNQEEAKPQNIDSNTIITVPKVWDS
                     GYKGEGTVVAIIDSGLDVDHDVLHISDLSTAKYKSEKEIEAAGITYGEWFNDKVVFGY
                     NYVDVNTVLKEEDKRSHGMHVTSIATGNPTQPVAEQLMYGVAPEAQVMFMRVFSDLKA
                     TTGAALYVKAIEDAVKLGADSINLSLGGANGSVVNMNENVTAAIEAARRAGVSVVIAA
                     GNDGTFGSGHSNPSADYPDYGLVGTPSTARDAISVASYNNTTVGSKVINIIGLENNAD
                     LNYGKSSFDNPEKSSVPFEIGKEYEYVYAGIGQASDFDGLNLTGKLALIKRGTISFSE
                     KIANATAAGAVGVVIFNSRPGEANVSMQLDDTAIAIPSIFIPLEFGEALAAKPYKIAF
                     NNETDIRPNPKAGLLSDFSSWGLSADGELKPDLAAPGGAIYAAINDNDYANMQGTSMA
                     SPHVAGAAVLVKQYLQATYPTKSPQEIEALVKHLLMSTAKAHVNKETTAYTSSRQQGA
                     GIIDTAAAISTGLYLTGEDGYGSITLGNVEDTFSFTVKLHNITNEDKTLNYSTQLTTD
                     TVQNGLITLAPRLLAEIPGGKVTVKANSSTTVTINVDASSFAEELTGLMKNGYYLEGF
                     VRFTDVADGGDIVSIPYVGFRGEFQNLAVLEEPIYNLIADGKGGFYFEPVTAQPDTVD
                     ISHHYTGLVTGSTELIYSTDKRSDFAIKTLGTFKNEAGYFVLELDESGKPHLAISPNG
                     DDNQDSLAFKGVFLRNYTDLVASVYAADDTERTNPLWESQPQSGNKNFYSGDPKNPKS
                     SIIYPTEWNGTDSEGNALADGKYQYVLTYSSEVPGAAVQTMIFDVIIDRESPVITTAT
                     YDETNFTFNPRPAIEKGESGLYREQVFYLVADASGMTTIPSLLENGDVTVSDNKVFVA
                     QNDDGSFTLPLDLADISKFYYTVEDYAGNISYEKVENLISIGNEKGLVTVNILDKDTN
                     SPVPILFSYSVTDETGKIVAELPRYAGDTSVLKLPFGTYTFDLFLYDTEWSSLAGETK
                     AVVTISEENSTAEVNFYVTLKDKANLLVDIDALLPSGSTIQLVTADGQTIQLPNAKYS
                     KTDYGKFVPVGTYTILPTLPEGYEFLEELDVAVLANQSNVKKLTLINKVALKELIAEL
                     AGLEETARYYNASPELQTAYDKALEDANAVYANKHNQAQVDSAVASLVAAREQLNGQA
                     TDTEKLIAEVSNYTPTQANFIYYNAENTKQIAYDTAVRSAQLVLNQENVTQAVVNQAL
                     ADLLAAKANLDGQKTDISALRSAVSVSSVLKATDAKYLNASENVKQAYDQAVEAAKAI
                     LADESASQASVDQALAVLTSAQAELDGVATSTNDAKEPANTATDKKDEGTVTPPPIDS
                     EKVDVQAPPVKDTGNSGHVPIGQKPNPQPTLPRPVTLQASLSSPNQEKQVTQLPNTGD
                     NDTRYYLVLGVIIGLGTLLVSKRRHKEEV"
BASE COUNT         1878 a         1437 c         1355 g         2067 t
ORIGIN      
        1 taattgtggg aatttttcgc attcagggtt cttaggatgg caaacctcac gaccaaaata
       61 aatcatagct tgatgagcag ggagccagag ttcaggaggt aagacttcca tgactcgttt
      121 ttctgtttcc aggggtgtag ccgatttttt gacaatatcg tggtgtttac aaatccgtcc
      181 cacgtgggta tcaactgcga aggcgggaat tccgaaaccg acacttaaaa caacattggc
      241 cgtttttctt cccactcctg ccaaggcttc taattcctca cgagtctgtg ggactatgcc
      301 atcatgtcgg tccaacaact gttgggcaca ttcttttaaa aactttgctt tattacgata
      361 taagcccaag cgagatatat agggctcgat gtccttcact tgtgctgctg ccatggcttg
      421 aggcgttggg aaagcctcga acaaacctgg ggttgcctta ttaacggcag catccgttgt
      481 ctgagctgac aaaagtactg cgcagaccaa ttcaaaatgg ttgcggaaat ccagactagg
      541 cttagcatca ggatagaggg cgatgatttc ttcaataact tttcttgcac gtttttttga
      601 taataccatg aattcattat agcatgaaaa cttggattta tctaaaatct ggattgtcat
      661 aaacctcatt cctcgtggta taataagaag aaaaggggga atatgtatgg acttacaaga
      721 actctgtaga aaggtcattc aagcaaggcc acgcaacagc cataagggaa gctatggtcg
      781 agtcttgctg attggtggac tgtatcccta tggtggagcg attatcatgg ccgcactagc
      841 aaccgtcaac agtggagcag gcttggtgac tgttgctact gaaaaagata acataccagc
      901 cttacatagt catctgcctg aagccatggc attttcattt gacgatcaag ccttgctgat
      961 aagcagctta gaaaatgctg acttggtatt gattggtcca ggttttgggg aaaatagcag
     1021 agctgaacag ttattggact ttgtttttga acatttatct gaccagcaga ttttagttct
     1081 tgacggctca gcccttacct tagtcgcaaa gcaaaacaga aagaacttcc cgtgtaaaca
     1141 agtcatcctg acaccccacc agaaagaatg ggaacggtta tcatccattc cgattgctga
     1201 ccaaacaagc caaagaaatc ttgaagcctt gcaatctttt caagaaaata caattcttgt
     1261 agctaaaagt tctgctacac aaatcctaaa aacccagcca aaccaagtca ccccaattgg
     1321 agctggtggt ccttaccaag caacaggagg tatgggagat actcttgcag gtatgattgc
     1381 aggatttgct gtacaatttc cccatgttca actatatgaa agaatccttg tagcaaccta
     1441 cctccactcc tatattgccg accaactggc tcaagattat tatcttgtaa agccaactga
     1501 tgtctcaaga aacatccaaa agacaatgct tcaatttcaa acacaaacaa ccgcctaatc
     1561 aatgattaag cggtctttta tataacaaac tcgtgattaa agcctgacaa atggtagaaa
     1621 atgatactca atgcaaatca aaagtagcct aggaaacgaa gccgaagata gaactggagt
     1681 tcatcaaggc aagttgacaa cggataattt agattttcga agagtatgac tatattttct
     1741 tagacttctt ctttatgacg tcgtttgctt accaacagag tccctagccc aataatgaca
     1801 ccaagaacaa gatagtatct cgtatcattg tctccagtat ttggtagttg agtcacctgt
     1861 ttttcttgat tagggctaga tagactagct tgcaaagtga ccggacgagg taaagttggt
     1921 tgagggtttg gcttctgacc tatcggtaca tgccctgaat tcccagtatc ttttacagga
     1981 ggtgcctgta catcaacttt ttctgagtct ataggtggag gcgttacagt gccttcatct
     2041 tttttgtcag tggcagtatt tgctggctct ttggcatcat ttgttgaagt agcaacacca
     2101 tccagttctg cctgagcgct tgtcagaacg gctagagctt gatcgacact tgcttggctt
     2161 gcagattcat cagctagaat cgctttcgct gcttcaactg cctggtcata agcttgtttc
     2221 acgttttcag atgcattgag atacttagca tctgtcgctt ttaatacgga agaaacggat
     2281 actgcgctac gaagggctga aatatcagtc ttttgaccat ctaagttggc tttcgccgct
     2341 aacaagtccg ccaacgcttg gttgacaact gcctgtgtta cattctcttg gttcaataca
     2401 agttgtgctg aacgaacagc tgtatcatag gcaatttgtt tggtattttc agcattgtaa
     2461 taaataaagt ttgcctgagt cggtgtgtag tttgatactt cagcaattag tttttccgta
     2521 tcggtagcct gaccgtttag ctgttctctc gccgccacaa gactggcaac tgctgaatct
     2581 acttgtgcct gattgtgttt gttggcatat actgcattgg catcttctaa tgctttatca
     2641 taggcagttt gaagttctgg actagcattg taataacgcg ctgtttcttc aagtcccgca
     2701 agttcagcaa tcagttcttt caaagcaact ttattaatca aggttaattt cttaacattt
     2761 gactggtttg caagtactgc tacgtctaat tcttccaaaa attcatagcc ttctgggagg
     2821 gttggaagga tagtgtaggt accaactggt acaaatttac cataatcggt cttagaatat
     2881 ttagcatttg gtagctgaat agtctggcca tcagcagtta ccagttggat ggttgaacca
     2941 gaaggtagta atgcatcaat atctaccagc aagttggcct tatctttcaa agtcacatag
     3001 aaattcacct cggcagtgct attttcttcc gaaatcgtca cgactgcttt tgtttcacct
     3061 gctaggcttg accattctgt atcatataag aataaatcaa aggtgtaagt accaaatggt
     3121 agcttaagaa cgctagtatc gccggcatat cgtggtaatt ctgcaacaat cttgcctgtt
     3181 tcatctgtga ctgagtaaga gaaaagtatt ggtacaggac tatttgtatc tttatcaaga
     3241 atattgacag ttaccaaccc tttttcattg ccgatactga tcagattctc tactttttca
     3301 tagctgatgt taccagcata atcctctact gtgtagtaga attttgaaat atctgcaagg
     3361 tcaagaggca atgtaaagga gccatcgtcg ttttgtgcca caaatacctt gttatcagaa
     3421 acggttacat caccattttc taataaggaa ggaatagttg tcataccgct tgcatctgct
     3481 acaagataga atacttgctc gcgatatagc ccggattctc ctttttcaat ggctggacga
     3541 gggttaaatg taaagtttgt ttcatcatag gtagctgtgg tgataactgg tgattctcta
     3601 tcgatgataa cgtcgaaaat catagtttgt actgctgcac ctggaacttc agatgagtag
     3661 gtcaaaacgt attgatactt accatctgct aaagcatttc cctcgctgtc tgtcccattc
     3721 cattcagtag ggtaaataat gcttgatttt ggatttttag gatcaccact atagaagttc
     3781 ttattgcctg actgtggttg actttcccaa agtggatttg ttcgttcggt atcatctgca
     3841 gcatagacgc ttgcgactaa atccgtataa tttctcaaga agacaccttt gaaagcgagc
     3901 gaatcttggt tgtcatcccc atttggcgag atagctaaat gaggcttacc agactcatca
     3961 agctctaaaa caaaatatcc tgcttcattt ttaaatgtac caagtgtctt gatcgcaaag
     4021 tcagatcgtt tgtctgtaga atagattaac tccgtacttc ctgtaacaag acctgtgtag
     4081 tgatggctga tgtcaacagt atctggttgt gctgtaacag gttcaaagta gaagcccccc
     4141 ttaccatcgg caataagatt gtaaatcggc tcttctagaa cggctagatt ttggaattcc
     4201 ccacggaaac caacgtatgg aatgctgaca atatcaccgc catcggctac atctgtaaat
     4261 cgaacaaaac cttcaagata gtaaccgttt ttcattaaac ctgtcaattc ttctgcaaag
     4321 cttgatgcat cgacattaat tgtaacagtt gtacttgaat tggctttcac agtcacctta
     4381 ccgccaggaa tctctgctaa tagacgcgga gccaaggtga tcaatccgtt ttggacagta
     4441 tccgttgtta attgcgttga gtagtttaaa gtcttatctt cgtttgtaat gttatgaagt
     4501 ttgaccgtaa agctgaatgt atcctcaaca tttcccaagg taatgctgcc ataaccgtct
     4561 tcgccagtca aatataaacc tgtagaaata gctgccgcag tatcgatgat acctgcacct
     4621 tgttgacgag aggaagtgta ggctgttgtt tctttgttca catgcgcttt agcagtagac
     4681 ataagcaagt gttttactaa ggcttcgatt tcttgagggg acttagtagg gtaagttgcc
     4741 tgtaaatatt gttttactag tacggctgct cctgctacgt gtggtgaagc catacttgtt
     4801 ccctgcatgt tggcatagtc attatcattg atggctgcat aaatagcacc acctggagca
     4861 gctaagtctg gttttagctc gccatccgct gatagacccc aacttgaaaa atctgaaaga
     4921 agacctgctt tggggttagg acgaatgtct gtttcgttat tgaacgcaat cttatatggt
     4981 ttagccgcta aagcttcacc gaattccaat ggaatgaaga tagatggaat tgcgatagct
     5041 gtatcatcca gttgcatgct cacattggct tcacctgggc ggctattgaa aataacgacc
     5101 cctactgccc ctgcagctgt tgcattggct attttttctg agaaactgat ggttcctcgt
     5161 ttaataagcg caagttttcc agtcaaattt aaaccatcaa aatccgaagc ttgaccgatt
     5221 cccgcataga catattcata ttctttcccg atttcaaatg gtacggaact tttctctgga
     5281 ttatcaaacg aacttttacc gtaattcaag tcagcattgt tttctaagcc aatgatatta
     5341 attactttac taccaaccgt tgtgttattg taagaagcga cagaaattgc atcgcgagct
     5401 gttgaaggtg taccgaccaa gccataatct ggataatcgg ctgacggatt agaatgaccg
     5461 gaaccaaatg ttccatcatt accagctgca ataacaacag aaacccctgc acgacgagca
     5521 gcctcgattg ctgcagtcac attttcattc atgttaacaa cagagccatt agctcctccc
     5581 aggctgaggt tgatgctatc tgcacctaat tttacagcat cttcaatcgc ctttacgtac
     5641 aatgctgcgc ctgttgtagc tttgaggtct gagaatacac gcataaacat gacttgcgct
     5701 tcaggagcta caccatacat taattgttca gcgactggtt gtgtcggatt tcctgtggca
     5761 atactcgtta cgtgcatacc gtgtgagcgt ttgtcttctt ctttcaagac agtattcaca
     5821 tcaacatagt tataaccaaa tacaacctta tcgttaaacc attcaccgta ggtaattcct
     5881 gctgcttcta tctctttttc tgatttatat tttgcagttg agagatctga aatatgcaat
     5941 acatcgtggt caacgtcaag acctgaatct atgattgcaa ctactgttcc ttcgcccttg
     6001 taaccactat cccaaacttt aggtactgta atgatcgtat tgctatcaat gttttgtggt
     6061 tttgcttctt cctgattagt aatagcagta gtctcatctg ctacggcaag cttctcatct
     6121 tcttctactt ttttctctga aatagctgga gtttctacag ctggttgagt cgcttctact
     6181 tctgtatttg tgatgttttc aagagcttct gagccaagtg tttcctctac attatctgta
     6241 gtggttacat cagttggggt agcctccaca gaagtgtcaa ctaactcctc gactacggga
     6301 ctttctgagg ctgattcgct gacgattacg tcaggaacag ttgcttccac cttagtctct
     6361 acaaggcttg tcaattcatc tgcagctacc gatggtgcac ctgcaaacaa aaaaactgca
     6421 cccaaaagaa cagacacagt tccaatttta tacttccgaa gtgagaaagt ttctttcttt
     6481 ttcataactt ttcctcctag tttttctcct tcattattgg caaaaccaat aagtatatta
     6541 aaacataaaa ctatcagcat tgcaagtata ttctgaaaat tcagttattt attcaaacta
     6601 taactaggta tcaataatat ctataaccat agatacagat aatacacact aaaaagggag
     6661 tgagcaagac atccatgatg gctccgtcct tacccacaga ataatgaaaa taagcataaa
     6721 gccctcacta agattat
//
LOCUS       DASGBY010000103         6674 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.103, whole genome shotgun sequence.
ACCESSION   DASGBY010000103 DASGBY010000000
VERSION     DASGBY010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6674
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.103"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            44..778
                     /gene="yaaA"
                     /locus_tag="U1396_001566"
     CDS             44..778
                     /gene="yaaA"
                     /locus_tag="U1396_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEM5342747.1"
                     /translation="MKIIIPNAKEVNTNLENASFYPLPDRSKPVLDAISQFDVKKMAA
                     FYKLNEEKAELEADRWYRIRTGQAKTYPAWQLYDGLMYRYMDRRGIDSKEENYLRDHV
                     RVATALYGLIHPFEFISPHRLDFQGSLKIDNQSLKQYWRPYYDQEVGDDELILSLASS
                     EFEQVFSPQIQKRLVKILFMEEKAGQLKVHSTISKKGRGRLLSWLAKNNIQELSDIQD
                     FKVDGFEYCTEKSTENQLTFIRSVKI"
     gene            908..2347
                     /locus_tag="U1396_001567"
     CDS             908..2347
                     /locus_tag="U1396_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5342748.1"
                     /translation="MKKRSRWRKSPKLKLVNFALWVLYAIILCLFLVTMYRYNILDFR
                     YLNYIVTILLIGVAVLTGLLMWRKKARIFTALVLIFSLVITSVGIYGMQEVVKFSTRL
                     NSNSAFSEYEMSILVPVNSEITDVRQVTNVLAPAEYDQDNITALLNDISKMESTQLAT
                     SPATSYLTAYQSMLNGESQAMVFNGVFTNILENEDPGFSSKVKKIYSFKVTQTVETAT
                     EQVSGDSFNIYISGIDTYGPISSVSRSDVNIIMTVNRATHKILLTTTPRDSYIAIADG
                     GQNQYDKLTHAGIYGVNASVHTLENLYGIDISNYIRLNFTSFLQLIDLVGGIDVENTQ
                     EFTSGGYNFPVGTVHLDAEQALIFVRERYSLANGDNDRGQNQEKVIAALIKKLRSPDN
                     LANYQAILTGLEGTIQTDLSLETIMGLVNTQLESGTQFTVESQAVTGTGRSDLSSYAI
                     PGSQLYMMEINQDSLEQAKAAIQSVLDGN"
     gene            2363..3052
                     /locus_tag="U1396_001568"
     CDS             2363..3052
                     /locus_tag="U1396_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein CpsC"
                     /protein_id="HEM5342749.1"
                     /translation="MNNQESNTIEIDVLSLLKTIWRKKIFILVTAVLGAGLAFVYSSF
                     LVTPQYDSTTRIYVVSQNVEAGAGLTNQELQAGTYLVKDYKEIILSQDVLTQVATELN
                     LNENLKEKVSVSIPVDTRIVSISVRDADPNEAARIANSLRTFAVQKIVEVTKVSDVTT
                     LEEAVPAEEPTTPNIKRNIILGLLAGGILATGLVLVMEVLDDRVKRPQDIEEVMGLTL
                     LGVVPDSKKLK"
     gene            3062..3748
                     /locus_tag="U1396_001569"
     CDS             3062..3748
                     /locus_tag="U1396_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HEM5342750.1"
                     /translation="MATLEIARKKKELVNKTEEYFNAIRTNIQLSGADIKVVGITSVQ
                     SNEGKSTTATSLALAYARSGYKTVLVDADIRNSVVSGFFKPMTKITGLTDYLAGTTDL
                     SQGLCDTDIPNLTAIESGKVSPNPTALLQSKNFENLLATLRRYYDCVIVDCPPLGLVI
                     DAAIIAQKCDAMVLVAEAGNVKRSSLKKVKEQLDQTGTPFLGVILNKYDIATEKYGEY
                     GNYGNYGKKA"
     gene            3787..4518
                     /locus_tag="U1396_001570"
     CDS             3787..4518
                     /locus_tag="U1396_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine protein phosphatase"
                     /protein_id="HEM5342751.1"
                     /translation="MIDIHSHIIFGVDDGPKTIEESLSLIGEAYRQGVRYIVATSHRR
                     KGMFETPEKVIMANFLQLKEAVAEVYPEIRLCYGAELYYSKDILSKLEKKKVPTLNGS
                     RYILLEFSMNTPWKEIQEAVNEVMLLGLTPVLAHIERYDTLAFHAERVEELIDKGCYT
                     QVNSNHVLKPALIGDRAKEFKKRTRYFLEQDLVHCVASDMHNLSSRPPFMREAYKLIT
                     EEFGKDKAKALLKKNPLMLLKNQAI"
     gene            4548..6374
                     /locus_tag="U1396_001571"
     CDS             4548..6374
                     /locus_tag="U1396_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM5342752.1"
                     /translation="MDLETVIDKLLERNIKRLILMCMDTCLIIVSMILSRLFFDVIID
                     IPDERFIFAVLFVLIFYLIISVRLKVFSLITRYTGYQSYVKIGLSLISAYSLFLIISM
                     ILWQTFSYRFILVSLFLSYVMLITPRIVWKVLHETRKNAIRKKDNPLRILVVGAGDGG
                     NIFINTVEDRKLNFEIVGIVDRDPNKLGTFIRTAKVLGNRNDIPRLVEKLAVDQVVIA
                     IPSLNGKEREKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVADLLGRLEVVL
                     DQDELNQFFKGKTILVTGAGGSIGSELCRQIAKFTPKCLLLLGHGENSIYLIHRELLE
                     KYQGKIELVPLIADIQDRELIFSIMAEYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIF
                     GTKNVAEAAKTAKVAKFVMVSTDKAVNPPNVMGATKRVAEMIVTGLNEPGQTQFAAVR
                     FGNVLGSRGSVVPLFKEQIRKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEI
                     FVLDMGEPVQILELARKVILLSGHTEEEIGIVESGIRPGEKLYEELLSTEERVSEQIH
                     EKIFVGRVTNKQSDIVNSFINGLLQKDRNELKDMLIEFAKQE"
BASE COUNT         2160 a         1068 c         1459 g         1987 t
ORIGIN      
        1 gttgaggttc aggaattaag ctactatatg gtataattaa gtgatgaaaa taattatacc
       61 taatgcaaaa gaagtaaata caaatctaga gaatgcctcg ttttatcccc tgcctgatcg
      121 aagtaagccg gtgctggatg ccataagtca atttgatgta aaaaagatgg ctgcttttta
      181 taaattgaat gaagaaaagg ctgagttaga agctgaccgt tggtatcgaa tcaggacagg
      241 tcaagcaaaa acttatccag cctggcagtt atatgatggt ctcatgtatc gttatatgga
      301 taggcgaggt atagattcga aagaagaaaa ttatctacgt gaccatgttc gtgtagcgac
      361 agccttatac ggattgattc atccttttga attcatttca cctcaccgct tagattttca
      421 agggagctta aagatagaca atcagtcttt gaaacagtac tggcgaccgt attatgacca
      481 agaagttggt gacgatgaac tgattctctc actggcttcg tcagaatttg agcaggtgtt
      541 ttctccacag attcagaaaa gattagttaa aattcttttc atggaagaaa aagcaggtca
      601 gctaaaagtt cactcgacta tatcaaaaaa aggtagagga agattgctgt cctggttggc
      661 taagaacaat attcaggaat tatcggacat tcaagatttt aaggtggatg gctttgaata
      721 ttgtactgaa aaatcaacag agaatcagct gactttcata cgctcagtta aaatatgaaa
      781 aaaagaacaa gttatgaaca agattgaaca agataacgtt tttcatcact aaatatggct
      841 atgtggctag taaaatattg ttttttgtga tacaataggt gagttataag taaaaggaag
      901 gttgtttatg aagaagagaa gcagatggag gaaatcgcct aagcttaagt tggtaaattt
      961 tgcgctttgg gtgctatatg ccattattct atgtctgttc ttagtgacta tgtatcgcta
     1021 taacatccta gattttcggt atttgaacta tattgtaaca atcctgttga taggggttgc
     1081 agtattgact ggcttgttga tgtggcgtaa gaaagcacgc atatttacag cactcgtact
     1141 tattttttca cttgtcatca cttctgtcgg aatctatgga atgcaagaag ttgtaaaatt
     1201 ttcaacacga ctaaattcaa attcggcatt ttcagaatat gaaatgagca tcctcgtccc
     1261 agtaaatagt gagattacag atgttcgaca ggtcactaat gtacttgctc cggctgaata
     1321 cgatcaagac aacatcactg ctttattaaa tgatatttcc aaaatggagt ctactcaact
     1381 agcaactagc cccgcgacct cttacctgac agcatatcaa tctatgttga atggcgagag
     1441 tcaagcgatg gtgttcaacg gagtttttac caatatttta gaaaatgaag atccaggctt
     1501 ttcttcaaaa gtgaaaaaaa tatatagttt caaagtgact cagactgttg aaacagctac
     1561 tgagcaggtg agtggagaca gttttaatat ctatataagt ggtatagata cttacggtcc
     1621 aatttcatct gtttcgcgtt cagatgtcaa tatcattatg actgtcaatc gtgcgacaca
     1681 taagatttta ttgacaacta ctccacgaga ttcatacatt gctattgcag atggtgggca
     1741 aaatcaatac gataaactaa cacatgctgg gatttatggt gttaacgcct cagtgcacac
     1801 cttagaaaat ctttatggta ttgacattag taactatatc cgactcaact ttacttcctt
     1861 cttacagttg attgatttgg ttggtggtat tgatgttgaa aatacccaag aatttacaag
     1921 cggagggtat aatttccctg ttgggacagt gcatctagat gcagagcaag cgctaatctt
     1981 tgttcgtgag cggtattcgt tggctaatgg tgataatgat cgcggtcaaa accaagaaaa
     2041 agtcattgca gccctcataa aaaaattgag gtcaccagat aatctagcga attatcaagc
     2101 tattctaact ggtttggaag gaactatcca aacagatttg agcttagaaa cgattatggg
     2161 cttggtaaat acccaattag aatcaggaac acaatttaca gtagagtcac aagcagtgac
     2221 aggaacagga cgctcagatt tatcttctta tgcgatacct ggttcacaac tttatatgat
     2281 ggaaattaac caagatagtc tggagcaagc aaaggcagcg attcagtcag tattggatgg
     2341 aaattaaaaa ataggagaaa acatgaataa tcaagaatca aatacaatcg aaattgatgt
     2401 attatcatta ttgaaaacaa tctggagaaa aaaaatcttc attctagtaa ctgcggtatt
     2461 aggagcaggg ctggcatttg tttatagcag ttttttggta actccacaat atgactccac
     2521 tacccgtatc tatgtagtga gtcaaaatgt tgaagctggt gcgggcttga ctaaccaaga
     2581 gttacaagca ggtacctatt tggtaaaaga ctataaggaa attatcctat cacaagatgt
     2641 attgacgcag gtagctacag agttgaactt gaacgagaac ttaaaagaaa aggtttcagt
     2701 ttctatccct gtcgatactc gtatcgtttc tatctccgtg cgtgatgcgg atccaaatga
     2761 agcggcacgt atcgcaaata gtcttcgtac ctttgcggtg caaaagattg ttgaggtcac
     2821 taaggtaagc gatgtgacaa cacttgaaga agcagtccca gcggaggaac caaccactcc
     2881 aaatataaaa cgaaatatca tacttggctt attagctggt ggtatcttgg caacaggtct
     2941 tgtactggtt atggaggttt tggatgaccg tgtcaaacgc cctcaggata ttgaagaggt
     3001 aatgggcttg accttgcttg gtgtagtacc agattcgaag aaattgaaat aggagaacaa
     3061 tatggcaacg ttagaaattg cacgtaagaa aaaagaattg gtaaataaga ctgaagaata
     3121 tttcaatgcc atccgtacca atattcagct tagcggagcg gatattaagg ttgtaggcat
     3181 tacctctgtt caatcgaatg aaggtaagag tacaactgcg actagtctcg ctcttgccta
     3241 tgctcgttca ggttataaga ccgttttggt ggatgcagat atccgaaatt cagtcgtgtc
     3301 tggtttcttc aagccaatga caaagattac aggcttgacg gattacctag cagggacaac
     3361 agacttgtct cagggattat gcgatactga tattccaaac ttgaccgcca ttgagtcagg
     3421 aaaggtttca cctaacccta ctgccctttt acaaagtaag aattttgaaa atttacttgc
     3481 gactcttcgt cgctattatg attgtgttat cgttgactgt ccaccattag gactggtaat
     3541 tgatgcagct atcattgcac agaaatgtga tgcgatggtg ctggtagcag aagcaggcaa
     3601 tgttaagcgc tcatctttga aaaaagtaaa agagcagttg gatcaaacag gcacaccgtt
     3661 cttaggcgtt atcttgaaca aatatgatat tgccaccgag aagtatggtg aatacggaaa
     3721 ctacggaaat tacggcaaaa aagcttaatt tctcagataa tataagtttg ataagtaggt
     3781 attagtatga ttgatattca ttcgcatatc atatttggtg tagatgacgg ccccaaaact
     3841 attgaagaaa gtctgagttt gataggcgaa gcttatcgtc aaggtgttcg ctatatcgtg
     3901 gcgacatctc atagacgaaa agggatgttt gaaacaccag aaaaagtcat catggctaac
     3961 tttcttcaac ttaaggaagc agtagcagaa gtttatcctg aaatacgatt gtgctatggt
     4021 gctgaattgt attatagtaa agatatctta agcaaacttg aaaaaaagaa agtaccaaca
     4081 cttaatggct cgcgctatat tctcttggaa ttcagtatga atactccttg gaaagagatt
     4141 caagaagcag tgaatgaagt gatgctactt gggctaactc ccgtacttgc tcatatagaa
     4201 cgatatgata ccctagcgtt tcatgcagag agagtagaag agttaattga caagggatgc
     4261 tatactcagg taaatagtaa ccatgtgctg aagcccgctt taattggtga tcgagcaaaa
     4321 gaatttaaaa aacgtactcg gtacttttta gagcaggatt tagtacattg tgttgctagt
     4381 gatatgcata atttatctag tagacctccg tttatgaggg aggcttataa gttaataaca
     4441 gaggaatttg gcaaagataa agcgaaagcg ttgctgaaaa agaatcctct tatgctatta
     4501 aaaaaccagg cgatttaaac tggttactct agattgtgga gagaaaaatg gatttagaaa
     4561 ctgttatcga taaactttta gagcgcaaca ttaaacgatt gatactcatg tgcatggata
     4621 cgtgtcttat tatagtttcc atgattttga gcaggctgtt ttttgatgtt attattgaca
     4681 ttccagatga acgctttatt tttgcagttt tatttgtttt aatattctac ctgattatct
     4741 cagttagact aaaggttttt tcgctaatta cgaggtatac tggatatcaa agttatgtga
     4801 aaataggact gagtttgata tccgcttatt cattattttt aatcatttca atgattctat
     4861 ggcagacctt tagttatcgt ttcatcttag tatccttatt tttgtcgtat gtaatgctca
     4921 ttactccgag gattgtttgg aaagtcttac atgagacgag aaaaaatgcc attcgaaaga
     4981 aggataaccc actaagaatc ttagtagtag gtgctggaga tggtgggaat atttttatca
     5041 ataccgtcga agatagaaaa ttgaattttg aaattgtcgg tatagttgat cgtgatccaa
     5101 ataaacttgg aacatttatc cgtaccgcta aagttttagg aaaccgtaat gatattccac
     5161 gattggtaga gaaattagct gttgaccaag tggtgattgc catcccttct ttaaatggta
     5221 aggagcgaga gaagattgtt gaaatctgta acactacagg agtgaccgtc aataatatgc
     5281 cgagcattga agacattatg gcgggtaaca tgtctgtcag tgcctttcag gaaattgacg
     5341 tagcagacct tcttggtcga ctagaggttg ttttggatca ggatgaattg aatcagtttt
     5401 tcaaagggaa aactatcctt gtcacaggag caggtggctc aatcggttca gagttatgtc
     5461 gtcaaattgc taagtttacg cctaaatgct tgttgttgct tggtcatgga gaaaattcaa
     5521 tctatctcat tcatcgagag ttactggaaa agtaccaagg taagattgag ttggtccctc
     5581 tcattgcaga tattcaagat agagaattga tttttagcat aatggctgaa tatcaacccg
     5641 atgttgttta tcatgctgca gcacataagc atgttccatt gatggaatat aatccacatg
     5701 aagcagtgaa gaataatatt tttggaacga agaatgtggc tgaggcggct aaaactgcaa
     5761 aggttgccaa atttgttatg gtttcaacag ataaagctgt taatccgcca aatgtcatgg
     5821 gagcgactaa acgtgttgca gaaatgattg taacaggttt aaacgagcca ggtcagactc
     5881 aatttgcggc agtccgtttt gggaatgttc taggtagtcg tggaagtgtt gttccgctat
     5941 tcaaagagca aattagaaaa ggtggacctg ttacggttac cgactttagg atgactcgtt
     6001 atttcatgac gattcctgag gcaagtcgtt tggttatcca agctggacat ttggcaaaag
     6061 gtggagaaat ctttgtcttg gatatgggtg agccagtaca aatcctggaa ttggcaagaa
     6121 aagttatctt gttaagcgga catacagagg aagaaatcgg gattgtagaa tctggaatca
     6181 gaccaggcga gaaactctac gaggaattgt tatcaacaga agaacgtgtc agcgaacaga
     6241 ttcatgaaaa aatatttgtg ggtcgcgtta caaataagca gtcggacatt gtcaattcat
     6301 ttatcaatgg attactccaa aaagatagaa atgaattaaa agatatgttg attgaatttg
     6361 caaaacaaga ataagaaagt aaaaaatatt tttactttcc tagagtttaa acgatgttta
     6421 agttctagga aggttggaat tgctttcgtg gaggtgatag atagaaacct atatatttgt
     6481 agaagaaagg atattaaact aaaggtgaat cggaacataa agtttagata gagttggtat
     6541 ttaatgccaa acaggtgaat gcaacctctc gctcgttact aagcaggaga tagtaaagtt
     6601 gcttgaaaga gagtttgtta atcagtataa gtaggctaaa gtgagaatat atatctatta
     6661 ttatcggtaa tgat
//
LOCUS       DASGBY010000104         6532 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.104, whole genome shotgun sequence.
ACCESSION   DASGBY010000104 DASGBY010000000
VERSION     DASGBY010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6532
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.104"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            10..225
                     /locus_tag="U1396_001572"
     CDS             10..225
                     /locus_tag="U1396_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbC family protein"
                     /protein_id="HEM5342753.1"
                     /translation="MAEFTFEIEEKLLVLSENDKGWTKELNRVSFNGAPAKYDIRTWS
                     PDHTKMGKGITLSNEEFQVLLDAFANK"
     gene            complement(237..776)
                     /locus_tag="U1396_001573"
     CDS             complement(237..776)
                     /locus_tag="U1396_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEM5342754.1"
                     /translation="MKTTSIKSLVYIAIGTALISTLSQISLSIGPVPFTLQTLAIGLV
                     ACLYKPKEAITSVSLYLVLGAIGLPVFSGFSGGFAALTGPTSGFLWGFLLYTIITSAL
                     TKSDSSPVTIFLACLLGTSICFLLGCFVFKLVLGASWTDSIGWTVLPFILPDLAKITL
                     VMICHRLLQPVIKKEAYFA"
     gene            982..1626
                     /locus_tag="U1396_001574"
     CDS             982..1626
                     /locus_tag="U1396_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEM5342755.1"
                     /translation="MTELLDIYRTLKSKTWVDLTHQINEKSPHFPALPALEKKALFTH
                     KDGFFVEQFTVVGQYGTHLDPPIHFVEGARYLDEIDLKDLLLPLYVIDKSAAVIENND
                     YEITKQDILDFEAEYGPIAPKSFVAFRSDLSKRWPSQDAIRNLDEDGVQRTPGWSHEA
                     LEYLIEERQVKAVGHETLDTDLGVSAAKHGGSLSEEYYLLSKDIYQLEVLANLD"
     gene            complement(1770..3119)
                     /gene="gorA"
                     /locus_tag="U1396_001575"
     CDS             complement(1770..3119)
                     /gene="gorA"
                     /locus_tag="U1396_001575"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEM5342756.1"
                     /translation="MKVFDIIAIGGGSGGIATMNRAAMYGAKAAVIEGSYLGGTCVNL
                     GCVPKKIMWYGSQVAEAIQHYGPEYGFTSQEVTFDFATLRKNREAYIERSRASYGNTF
                     NNNGVEVIQGFARFVDNQTVEVNGELIRAKHIVIATGAKPVVPAIPGSELGIVSDDVF
                     AWEELPSSVAVIGAGYIAVEMAGLLHGLGVQTDLFVRGNRPLRSFDTYIVDALMEEMQ
                     RTNLPLHTGKTPVSLEKTDDGQIQINFADGSNHIAQKVLWAIGRKPNIDKLNLKATSV
                     QLTSSGHISVNEYQETAVPGIYALGDVTGEKELTPVAIKAGRLLAERLFNNKPTAKMD
                     YTTIPTVVFSHPAIGTVGLTEDEAITQYGQDNVKVYTSAFTSMYTALENNRQMAKFKL
                     VTVGENEKVVGLHGIGYGVDEMIQGFSVAIKMGATKEEFDAVVAIHPTGSEEFVTMR"
     gene            3237..4092
                     /locus_tag="U1396_001576"
                     /pseudo
     CDS             3237..4092
                     /locus_tag="U1396_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            4173..4754
                     /locus_tag="U1396_001577"
     CDS             4173..4754
                     /locus_tag="U1396_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HEM5342757.1"
                     /translation="MELNVFAGQEKSELSMIEVARAILEERGRDNEMYFNDLVNEIQN
                     YLEKSNSEIRAALPTFYSDLNVDGSFIPLGENKWGLRSWYAIDEIDEEVITLEEDDED
                     APKRKKKRVNAFMDGDDDAIDYGHDDPEDEDNYPGSVSSEYDDENPDDEKDEVESYDS
                     EINEIIPDDELDEEDVDLGEDDDEYSDEEVVDE"
     gene            4947..>6532
                     /locus_tag="U1396_001578"
     CDS             4947..>6532
                     /locus_tag="U1396_001578"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000170456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEM5342758.1"
                     /translation="MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYI
                     NIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKE
                     RKGEYLGATVQVIPHITDALKDKIKRAARTTDADVIITEVGGTVGDIESLPFLEALRQ
                     MKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPAG
                     QGIKNKLAQFCDVAPEAVIESLDVEHLYQIPLNMQAQNMDQIVCDHLKLDVPPADMTE
                     WTAMVNKVLNLQKKVKIALVGKYVELQDAYISVVEALKHSGYANDAAIELDWVNANDL
                     TAENVAERLGQAQGIIVPGGFGQRGTEGKIQAIRYARENDVPMLGVCLGMQLTCVEFA
                     RHVLGLEGANSFELDPETKYPIIDIMRDQIGVEDLGGTLRLGLYPSKLKRGSKAAAAY
                     DNQEVVQRRHRHRYEFNNDFREQFEKAGFVFSGVSPDNRLVEIVEIPENKFFVACQYH
                     PELQSRPNRPEGLYTAFVSAA"
BASE COUNT         2057 a         1280 c         1393 g         1802 t
ORIGIN      
        1 aggtaacaaa tggcagaatt tacatttgaa attgaagaaa aattattggt cttatctgaa
       61 aatgataaag gatggaccaa ggagcttaat cgagtatctt ttaatggcgc accagccaag
      121 tatgacatcc gtacctggag tcctgaccat accaagatgg ggaaaggaat cacacttagt
      181 aatgaggaat ttcaagttct actcgatgcg tttgccaata aataaacaaa ggaagcctaa
      241 gcaaaatagg cttctttttt gataacaggt tgcaataaac gatgacaaat catgactagt
      301 gtaattttag ctaaatcagg aagaatgaaa ggcagaacag tccatccgat agagtcagtc
      361 caactggcac ctaaaactag cttaaataca aaacagccga gaaggaaaca gatacttgtt
      421 ccaagtaggc aggctagaaa aattgtgact ggtgaggagt ctgatttagt gagggcagaa
      481 gtgatgatag tgtagagtag aaacccccat agaaagcccg aggtcggtcc tgtgagtgca
      541 gcaaagccac cagaaaaacc agaaaaaaca ggtaaaccga tagcaccaag aactagatat
      601 aagctgacac ttgtaattgc ctccttgggt ttgtatagac aagctactaa gccgatagct
      661 agggtttgta atgtaaatgg tacaggtccg atagacagac tgatttgtga aagggtggaa
      721 attaaggctg ttccaatagc gatataaaca agtgatttga tagaagttgt tttcatttgt
      781 tatcctctta aaattttatg gttaacaaaa attatagtga gatttgataa gaaagtcaat
      841 gctctctcat cggctgtaac aactctatag gtgattttta taacagctaa taagaaactt
      901 atatagtaaa aaaacaacaa attatatgta gaacaaccta tacctatgct agaataataa
      961 aaaaagaaag tgagaatttc tatgacagaa ttacttgata tttaccgtac tcttaaatct
     1021 aaaacttggg tagacttgac tcaccaaatc aatgaaaaga gcccgcattt ccctgcgcta
     1081 ccagctctcg aaaagaaagc cctatttact cataaggatg gcttctttgt cgaacaattt
     1141 acggttgtgg ggcagtacgg aacccatctt gatcctccga ttcattttgt agaaggggct
     1201 cgttatcttg atgagattga tttgaaagat ttactcctgc cactctacgt tattgataaa
     1261 tcagctgctg ttatagaaaa taatgactat gagataacta agcaggatat tttagacttt
     1321 gaggctgaat atggtccgat agcgccaaaa tcttttgttg cctttcgttc ggatttgtca
     1381 aagcgctggc ccagtcaaga tgccattcgt aatctagacg aagatggagt tcaacgtaca
     1441 ccaggatgga gtcatgaagc tctagaatat ttgattgaag aacgtcaggt gaaagcagtt
     1501 ggtcatgaaa cattggatac cgatttagga gtatctgcag ccaaacacgg aggaagttta
     1561 tcagaagaat actatctcct atcaaaagat atttatcagt tggaagtatt ggcaaacttg
     1621 gattaggtac cgccaacagg tgcattgatt tcaatcgctt ttcctcattg ggagaaggct
     1681 tcgggttcac cagtgcgagc aattgccata ttaccataaa aaaaagtcca gacagtgctg
     1741 accttcatgt ctggactttt tcaattgagt taacgcatag taacaaattc ttcagaacct
     1801 gtcggatgga tggcgacaac ggcatcaaat tcttcttttg tagctcccat tttgatagca
     1861 actgagaatc cttgaatcat ttcatcgaca ccatagccaa tgccgtgtag tccaacgact
     1921 ttttcatttt ctcccacagt tactaattta aacttagcca tttggcgatt gttttctagg
     1981 gcagtgtaca tagaagtaaa ggctgaagta tagactttta cattgtcctg accgtattgg
     2041 gtaatcgctt cgtcctcagt tagaccaacg gttccgatag cggggtgaga aaagacgaca
     2101 gttgggatgg ttgtgtaatc catttttgcg gttggtttat tgttaaataa acgttctgcc
     2161 aaaaggcgac ctgccttgat tgcaacgggt gttaattctt tttcaccagt tacatcaccg
     2221 agggcataga tgcctggtac agctgtttct tggtattcat tgacagaaat atgtcctgaa
     2281 gaagtaagtt gaacactagt tgctttcagg ttgagtttgt caatatttgg tttacgtcca
     2341 attgcccaaa ggaccttctg agcaatatgg ttactaccgt cagcaaagtt aatctggatt
     2401 tgtccatcat cagttttttc aagactgaca ggagttttcc cggtatggag tggaaggttg
     2461 gtacgttgca tttcttccat caaggcatca acaatgtagg tatcaaagct acgaagaggg
     2521 cgattaccac gaacaaatag gtcagtttgg acaccgagtc catgtaggag accggccatt
     2581 tccacagcga tataaccagc accaatcaca gccacagaag agggtaattc ttcccatgca
     2641 aagacatcgt cagatacaat ccctagctca ctaccaggaa tagcagggac taccggtttg
     2701 gcgccagttg cgatgacaat gtgttttgca cgaatcagtt caccattgac ttcaaccgtt
     2761 tgattatcca caaaacgtgc gaaaccctgg ataacttcta ctccgttatt gttaaaagta
     2821 ttaccgtagg atgcgcgtga acgctcaata taggcttcgc gatttttacg caaggtggca
     2881 aaatcaaagg tcacttcttg gctagtaaat ccatattcag gtccataatg ctgaatggct
     2941 tctgctacct gagagccgta ccacataatt tttttgggta cacagccaag gttaacacaa
     3001 gtccctccta gatagcttcc ctcaataact gctgccttgg caccgtacat agcagctcgg
     3061 ttcatggtag cgatgcctcc gctcccacca ccgatagcga taatatcaaa cactttcata
     3121 aatttcctcc aataaaatca ttaactatac ccgtggtgct agttcatttc aaaatacaat
     3181 aaaaagccca aatggactat actgtaagtg acgaaacata caggaggtta gtccaaatga
     3241 gccacttaca gtataccgct aaatctcatc atttgcaatg gaatgtatgc caattatcac
     3301 aaatttgtca tcacttctac caaaactatt gtccagattc ctttaaacat cggcgtaatg
     3361 ttggcttagc caaagtttca gatgactcac tccttgtctt gctcttgtta caggccgaac
     3421 taggcataac gtcacagcgt catttctata gcatctgcca cctctttcct tgtggtcagt
     3481 tactagaaag aagccgtttc aatcgtcggt caaaacaatt gatttggctc gtccaattaa
     3541 tccgaaaagc tatgagtgaa atgcttccat ctgataaact agccattata gatagttttc
     3601 ctttgccaac ctgttcgcaa tcacagagct accattttta aaggattagc cgatattggc
     3661 tacaacgcct ctaaacatct ttggttctac ggcttcaagg ttcatatgct ggtgacctta
     3721 tctggtttta ttctgaacta tgttgtcaca cctgcctctg ttcacgatat caaggtggtt
     3781 tatgaactat tagaagggtg taagcaatcg gttatcctag gtgatttagg ctacctgagc
     3841 agtgaactca agaaggactt agaacaacaa ggttaccatc tatggacgcc atttcgacaa
     3901 aacatggcag aggctgaaga acataacaat tggaaagtaa tgaccatgag acgaactatt
     3961 gaaacacgtt tttctgaact gtgtcgtctc tttgacatcg aacatacatt agctagaagc
     4021 ctatccggac tacagttacg aatggaacaa attattctag ctcataactt acgctatttt
     4081 gaaatgaact agcaccacgg gtaaagatta tctttgacta tttgcctttt ttagcgtaaa
     4141 atagaaagga aagacaaaaa aggagaacag ccttggaact taacgtattt gcaggacaag
     4201 aaaaaagcga actttccatg attgaagtag cccgtgctat tttagaagaa cgtggacgtg
     4261 acaacgaaat gtatttcaac gacttggtca atgaaattca aaactacctt gaaaaatcaa
     4321 acagcgagat tcgcgcagcc cttccaacct tctattctga tttgaatgtg gatggaagct
     4381 tcattccact tggcgaaaac aaatggggct tacgttcttg gtacgcaatc gatgagatcg
     4441 acgaagaagt gatcactctt gaagaagatg acgaagatgc accaaaacgc aagaagaaac
     4501 gtgtcaatgc cttcatggac ggtgatgatg atgcgattga ctatggacat gatgatccgg
     4561 aagatgagga taactatccg ggtagtgtat catcagaata cgatgatgaa aatccagatg
     4621 acgaaaaaga tgaagttgag tcctatgatt cagaaatcaa cgaaattatc ccagatgacg
     4681 aattggatga agaggatgtt gatttaggtg aagatgacga cgagtattca gatgaagagg
     4741 tcgtcgacga ataagaatta tatccccata gattcttaaa aataatttga caagactact
     4801 gaattacgat aggatattat cgggcacctc ttttgaggtc ggagctccct agcgataggg
     4861 agctattttt gttttttctt caagttaaca ggaagtatcc ccacaaattg cttcctatta
     4921 gcctgaatcg tagaaaagga gtttgcatga caaagtatat ttttgtaaca ggtggcgttg
     4981 tttcctctat cggcaaaggg attgtagcag ccagcctggg tcgtttattg aagaaccgag
     5041 gtctcaaggt aacaatccaa aaatttgatc catacatcaa tattgacccg ggaacaatga
     5101 gtccgtatca acacggtgaa gtttttgtga cggacgacgg cgcagaaacc gacttggacc
     5161 ttgggcatta tgagcgtttc atcgacatta acctgaacaa atattcaaat gttacaacag
     5221 gtaaaattta tagcgaagtc ctccgtaaag agcgtaaagg ggaatactta ggggcaacag
     5281 ttcaagttat tccacacatt acagatgctt tgaaagacaa aatcaagcgt gcagctcgta
     5341 ctacagatgc agatgtcatc attacggaag tgggtggtac agtaggtgat attgaaagct
     5401 tgccattcct tgaagcgctt cgtcagatga aggcagatgt cggttcagac aatgttatgt
     5461 atatccatac aacactcttg ccttatctca aagcagcagg cgaaatgaaa actaagccaa
     5521 cacaacattc tgtaaaagag ttgcgtggtc taggtattca gcccaacatg ttggtaattc
     5581 ggacagagca gcctgctgga caaggaatta aaaataaact ggcacaattc tgtgatgttg
     5641 caccagaagc agttattgag tccttggatg tcgaacatct ttaccaaatc ccattaaata
     5701 tgcaagcgca gaacatggat caaattgttt gcgatcactt gaagctcgac gtacctccag
     5761 cagatatgac agagtggaca gcgatggtaa acaaggttct taatctccag aaaaaagtaa
     5821 aaatcgcttt agttggtaag tatgtagaat tacaagatgc ctatatttct gtagttgaag
     5881 ctctaaaaca ctcaggatat gcaaatgatg ctgctatcga attggactgg gtcaatgcaa
     5941 atgatttgac agcagaaaac gtagctgaac gtctaggaca agcacaagga attatcgttc
     6001 ctggtggctt tggacaacgt ggtacagaag ggaaaataca agccattcgt tatgctcgtg
     6061 agaatgacgt gccaatgcta ggggtctgct tgggaatgca gctgacctgt gtagaatttg
     6121 ctcgtcacgt tctcggttta gaaggtgcta acagctttga attagaccca gaaaccaaat
     6181 atccaattat tgacatcatg cgtgatcaaa ttggagtgga agatttagga ggaactctcc
     6241 gtttaggtct ttatccaagc aagctcaaac gtggctccaa ggctgcagct gcttatgata
     6301 atcaagaagt tgtacaacgt cgccatcgtc atcgttatga gtttaataat gacttccgtg
     6361 aacaatttga aaaagcaggt tttgttttct caggtgtgtc accagacaac cgtttggtag
     6421 aaattgttga aattccagaa aataaattct tcgttgcctg ccaataccat ccagaactac
     6481 aatctcgtcc taatcgccct gaaggtttgt atacagcctt tgtttcagca gc
//
LOCUS       DASGBY010000105         6479 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.105, whole genome shotgun sequence.
ACCESSION   DASGBY010000105 DASGBY010000000
VERSION     DASGBY010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6479
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.105"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(76..1362)
                     /locus_tag="U1396_001579"
     CDS             complement(76..1362)
                     /locus_tag="U1396_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015057417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM5342759.1"
                     /translation="MSKTLKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRA
                     GNFTMDEMREGIEYAHARGAKVYVAANMVTHEGNEEGAGAWFRELRDMGLDAVIVSDP
                     ALIVICATEAPGLEIHLSTQASSTNYETFEFWKELGLTRVVLAREVTMDEVAEIRKRT
                     DVEIEAFVHGAMCISYSGRCVLSNHMSKRDANRGGCSQSCRWKYNLYDLPFGEERRSI
                     KGEIPEEFSMSAVDMCMIDHIPDMIENGVDSLKIEGRMKSVHYVSTVTNCYKAAVDAY
                     LESPEKFEAIKQDLIDEMWKVAQRELATGFYYSPPSENEQLFGARRKIPEYKFIAEVV
                     AFDKETMTATIRQRNVINEGDQVEFYGPGFRHFETTIQDLHDSNGEKIDRANKPMELL
                     TIKLDREIYPGDMIRACKSGLINLYQEDGQSLTIRA"
     gene            complement(1540..2469)
                     /locus_tag="U1396_001580"
     CDS             complement(1540..2469)
                     /locus_tag="U1396_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM5342760.1"
                     /translation="MEKIIITATAESIEQVKELLVAGVDRIYVGEADHALRIPTNFTY
                     DELREIAELVHSAGKELTVAANALMHQDMMDNIKPFMELMREIKVDYLVVGDTGIFYI
                     NKRDGYNFKLIYDTSVFVTSSRQINFWKDHGAVEAVLAREIPSEELFDIAKNLEMPAE
                     ILVYGASVIHHSKRTLLQNYYNFTKADETDLSRGRGLFLAEPSDPDSHYSIFEDKHGT
                     HIFINNDIDMMTKLSELDEHGYHNWKLDGIYCPGQNFVEIVKLFVQARDLIEKGEFTY
                     DQAFLLDEQVRKLHPAERGLDTGFYEFDRNKVK"
     gene            2630..2944
                     /locus_tag="U1396_001581"
     CDS             2630..2944
                     /locus_tag="U1396_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3270 domain-containing protein"
                     /protein_id="HEM5342761.1"
                     /translation="MALRHYQSHEYQYEEYIPKEKKANFQTYQAKNTNKERLKELLFF
                     VNIAFFSLITVIASYVYLSVGIPVFVAIILASATGFLGLRLVQIGLKKKFKPKQVIRK
                     NE"
     gene            complement(2966..3376)
                     /locus_tag="U1396_001582"
     CDS             complement(2966..3376)
                     /locus_tag="U1396_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5342762.1"
                     /translation="MNIKEVSDVTGLSADTIRYYERIGLIPKIARKSSGVRNFSESDV
                     AILEFIRCFRSAGMSIERLIEYMGLVQAGDSTVEARIDLLKEEREELRSRLSEIQQAL
                     DRLDYKIENYQTILRGAENQLFTDGGSSFKKGRG"
     gene            complement(3476..3652)
                     /locus_tag="U1396_001583"
                     /pseudo
     CDS             complement(3476..3652)
                     /locus_tag="U1396_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104139.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            complement(3783..4610)
                     /locus_tag="U1396_001584"
     CDS             complement(3783..4610)
                     /locus_tag="U1396_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5342763.1"
                     /translation="MASQIRHDLSLLVFFLITGLLLLLYPTVSDYWNSHYQSEAVATY
                     SEKLLDISKEEKQKILENVSAYNSTLEKGTIPNLNIDSVALKKYDSILNITDTGIMGY
                     VEIPKLQTMLPIYHGTDDAVLQVAVGHLAGTSLPIGGQGSHAAISGHRGLPSAKLFSD
                     LDQLAIGDTFMIQVLDNTLTYEIDKIITVTPDDVSPLMIDPNEDFVTLVTCTPYGVNS
                     HRLLVRGHRIENQLLARQVVSEGSIVKPILVSPFIALCLLGLLWSLFFVKKEVNLFM"
     gene            4578..4967
                     /locus_tag="U1396_001585"
                     /pseudo
     CDS             4578..4967
                     /locus_tag="U1396_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(4968..5354)
                     /locus_tag="U1396_001586"
     CDS             complement(4968..5354)
                     /locus_tag="U1396_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342764.1"
                     /translation="MKILWERLFKFVQQCFREKKTAKITMALSIIMAFGISYLLILPA
                     ITLETDSQESVLQSVYNQPTTVEQPVQEEQAESQLAQVQSAGSLFAEHENITVQVNYE
                     EHTFEQPVRLQVLPSEDSTKYIGLVR"
     gene            complement(5373..5975)
                     /gene="lepB"
                     /locus_tag="U1396_001587"
     CDS             complement(5373..5975)
                     /gene="lepB"
                     /locus_tag="U1396_001587"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5342765.1"
                     /translation="MATNKNKDYVTISDLPSISIMSEELDKIRYKKRYLETLKNTIFT
                     LVTVVALAVLIAMLWLPVLHIYGSSMSPTLKAGDMVATVKTNTLSTGDMVAFYYNNKV
                     LVKRVVATSGQWVNIDEQGNVYANGKTLDEPYVKDKAYGQTDIKLPYQVPEGQYFVMG
                     DHRSVSIDSRNTAIGSIGEEQLVGKLTFRIWPFHKMGVIK"
     gene            complement(5965..6258)
                     /locus_tag="U1396_001588"
     CDS             complement(5965..6258)
                     /locus_tag="U1396_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HEM5342766.1"
                     /translation="MQKTLEKLKRSELFELLVEQAKEIESYQAKLVDLEKRIEYREAV
                     LGEIGSIAEASLAVTRIFEEAQLAANIYLEQVQKVTHKQSDNCEIGRTDEDGD"
BASE COUNT         1889 a         1401 c         1139 g         2050 t
ORIGIN      
        1 tcgcaaactt ctcaattttt tatattttta agagtttatc tacgttctga ggctgaaatt
       61 tcagcctttt tatgtttatg cacgaatagt tagagattgc ccatcttctt ggtagaggtt
      121 gatgaggcct gatttgcagg cacgaatcat gtcaccagga tagatttcac ggtccagctt
      181 aatagttaag agttccatcg gcttgttggc gcggtcaatc ttttctccat ttgaatcatg
      241 caagtcctga atagtcgttt caaaatgacg gaaacctggt ccgtaaaact ctacttggtc
      301 accttcgttg ataacattac gctgacgaat ggttgcagtc atggtttcct tgtcaaaagc
      361 cactacttcg gcgatgaatt tgtattctgg aatcttacgg cgggctccaa agagctgctc
      421 attttcactc ggcgggctat agtagaaacc tgtcgccaat tcacgttggg caaccttcca
      481 catctcatca atcaggtctt gcttgattgc ttcaaacttt tctgggcttt caagataggc
      541 atctaccgca gccttgtagc agttggtcac tgttgatacg tagtggacag atttcatacg
      601 gccttcgatt ttcaggctat cgaccccatt ttcaatcata tctggaatat ggtcgatcat
      661 acacatgtcc actgcagaca tggagaactc ctctgggatt tcccccttaa tcgaacggcg
      721 ttcttcgcca aatgggaggt cgtagagatt gtacttccaa cggcaagact gggagcagcc
      781 accgcggtta gcatcgcgtt tgctcatgtg gttagagaga acgcagcgac ctgaatagga
      841 aatacacata gctccgtgaa caaaggcctc aatctcaacg tctgtccgtt tacggatttc
      901 agccacctcg tccatagtca cttcgcgggc caggacgaca cgagtcaagc ccaattcctt
      961 ccagaactcg aaggtctcat agttggtgga agaagcctgg gttgacaggt gaatttcaag
     1021 gcctggcgct tcagtagcac agataacaat aagagccggg tcagatacga taacggcatc
     1081 caagcccatg tcacgcaatt cacggaacca ggctcctgct ccttcttcat taccttcgtg
     1141 ggtgaccatg ttggcagcca catagacctt ggcaccacgg gcatgggcat attcaatccc
     1201 ttcccgcatc tcgtccatgg taaagttacc agctcggcta cgcagaccgt aggcctggcc
     1261 gccaacaaag accgcatcag caccataatc aatggcaacc ttcaatttct ccaaagtccc
     1321 agcaggtgac aagacctcgg gacgctttaa tgtttttgac atcatgtaaa atctcctcta
     1381 tttgcgacgg tttccacatg aaacgatact tttccatgtg gaaacctagt gcagagttta
     1441 gaaaatcgct caaaggcgtt ttcgtgctct gaccttacat aataagtgac agagctaact
     1501 ctgtcaggtt aaagtaaata aattgtgcta taaatattgt tatttaacct tattgcggtc
     1561 aaattcgtag aagcctgtat ctaagccacg ttcagctgga tggagcttgc gtacctgctc
     1621 atccaaaagg aaggcctgat cataagtgaa ttcgcctttt tcaatcaaat ctcttgcttg
     1681 aacaaaaagc ttaacaattt caacaaagtt ctgtccaggg caatagatac catcaagttt
     1741 ccaattatga taaccatgtt catctaattc tgacagcttg gtcatcatat caatgtcatt
     1801 gttgataaag atatgggtac cgtgcttgtc ctcaaagata gaatagtggc tatctgggtc
     1861 gctcggctca gctaagaaaa gtccgcgtcc acgtgataaa tctgtctcat cagcctttgt
     1921 aaaattgtaa taattctgta acaaggttcg tttagaatgg tgaataacag aggcgccgta
     1981 gaccaagatt tccgctggca tttccaagtt cttagcaata tcaaagagtt cttctgatgg
     2041 aatctctctt gccaaaacag cctctactgc tccatgatct ttccaaaagt taatctgacg
     2101 actggaagtc acaaagacag atgtatcata gattagcttg aaattgtagc catcacgttt
     2161 attgatatag aaaattccag tatctccgac aaccagataa tcaaccttga tttccctcat
     2221 tagctccata aatggtttga tattgtccat catatcttga tgcatgaggg cattggcagc
     2281 gaccgtcaat tccttcccag cgctatgaac tagctctgct atttccctga gttcatcata
     2341 ggtaaaattt gttgggatgc gaagagcatg gtcagcttca cctacataaa tgcggtcaac
     2401 gcctgctaca agcagttctt tgacctgctc aatactttca gctgttgctg taatgataat
     2461 tttttccata aagataatta tatcaaaaag agaaatatct gataagtgac tacctgtatt
     2521 ttaatgttca gacttttcta atctttctct tgtaacatta ttgtaatata aatgacataa
     2581 aaattcagca atgttatggt attctttaag gagcagaaaa ggagacgata tggcattaag
     2641 acactatcag tcccatgagt accagtacga agagtatatc ccgaaagaga aaaaggctaa
     2701 ttttcaaacc tatcaggcaa aaaataccaa taaagaacgt ctaaaggaat tgttgttttt
     2761 tgttaatatc gcatttttta gtttgataac agtcatcgct agttatgtct atctatccgt
     2821 aggcattcct gtttttgttg ccatcatatt ggcaagtgcg acgggttttc ttggactacg
     2881 tttggttcaa attgggctaa agaagaaatt taaacccaaa caagttataa gaaaaaatga
     2941 ataatgaagt ataaaggcag agaagttatc ctctgccttt tttgaatgaa ctaccgccgt
     3001 ctgtgaacaa ttgattctct gcacctctta atatagtctg gtaattttct attttataat
     3061 ctaaacgatc tagagcttgc tgaatttccg acaagcgtga ccgcagttct tcccgttcct
     3121 cttttagtaa atcaatccga gcttccactg tactatctcc tgcctgcacc aagcccatat
     3181 actcaatcaa gcgctcaata gacataccag cactcctaaa acagcggata aattccaaaa
     3241 tggctacatc actttccgaa aagttcctta ctccagaaga ttttcttgca attttgggaa
     3301 taagtcctat ccgctcatag tagcgaatgg tgtctgctga tagacctgtt acatcactaa
     3361 cttctttgat attcattcca ggctcctttc tttgttttcg cttattatac accttgaagt
     3421 ccactccagg tcaagtcatt atttaaaaaa tctgagtctc ctcagatttg ccatcctata
     3481 aatactcgcc cttgacaaca aagaaggtgc cacgaatttc gccagctagt ttggagcgtt
     3541 ggcgggcaaa cttaaattta ccttcaaatt ccttaggaat gtcaatgccg tctgacaatt
     3601 tgaatccgac agctcgcttg ccaccttttt ctagcgtata gaggacattg acatatcgtc
     3661 atttggttta tcttctattt caccttttgg atgattggga gttggaaaaa tctccctttc
     3721 ctaagcttaa aagctaaaga acaaagtcga atagtttgac attctttgcg atactatcta
     3781 agtcacataa acaaatttac ttcttttttt acaaaaaata aactccaaag tagtcctaat
     3841 aaacataaag caataaaagg agaaaccagt ataggtttta caattgatcc ttctgagact
     3901 acttgcctag caagtagttg attttcaatt cgatgacctc taactaataa tcggtggcta
     3961 ttaacaccat aaggtgtgca agtcacaagg gttacgaaat cctcattcgg atctatcatc
     4021 aaaggagata catcatctgg agtaaccgta ataattttat caatttcgta tgtcagagtg
     4081 ttatctaaaa cttgtatcat aaatgtgtcc cctatagcca gctgatctaa atcagaaaac
     4141 agttttgcag aaggcaatcc ccgatgtcct gaaatagcag cgtgacttcc ctgaccgcca
     4201 atgggaaggg aagtcccagc aaggtgacct actgctacct gcaatacggc atcatccgtt
     4261 ccgtgataaa taggtaacat tgtctgcaat ttaggaattt ctacatagcc cataatacca
     4321 gtatctgtga tatttaaaat tgagtcatac ttttttaaag ctacactgtc tatatttaaa
     4381 ttaggtattg tccccttttc gagcgtgcta ttatatgcac tgacattttc taaaattttt
     4441 tgtttttctt cttttgaaat atccaataat ttctcagaat aagtagctac tgcttctgat
     4501 tgataatgtg agttccaata atcacttact gttggatata ataacaataa taggccagtt
     4561 attaagaaaa agactagcag actcaaatca tgcctgattt gactagccat cgtgcttgtc
     4621 aattggcttt ttcagatggt catacgcatg attttaccct ttttaaggag agtattggct
     4681 atagtttgcc ccaaaatacc cttgctttcg tagatttagg gtatttaggc atcttgaaat
     4741 ttcacgaaaa tacctttatt cctgctaagc attctaaaca tcacctctta accgaagagg
     4801 atagacggtt gaatcgagag atagctaaaa tccgtattga agttgaacac tttaatgcca
     4861 aatttaaaac ctttaaaatc atggcacagc cctatcgtaa tcgtagaaaa cggtttgaat
     4921 taagaactga gttgatttgt ggtatcatca accatgagat gatgtagtta ccgaacaagt
     4981 ccaatatatt ttgtactatc ttctgagggt aaaacctgta accgaactgg ctgttcaaat
     5041 gtatgctcct catagttaac ttgtacagtt atattttcat gttcagcgaa taagcttcca
     5101 gcagattgaa cctgtgctaa ctgtgactcc gcctgttctt cttgaactgg ctgttctact
     5161 gttgttggct gattatagac tgattgcaga acactctcct gactgtctgt ctctaaagta
     5221 atggctggta aaatcagcaa atatgatatt ccaaaagcca taattattga caacgccata
     5281 gttatttttg cagtcttttt ctctcgaaag cattgctgaa caaatttaaa caatctttcc
     5341 cataatattt tcatgtttta tatctccttc ctttatttga ttactcccat tttatgaaat
     5401 ggccatatcc gaaaggttaa ctttccaacc agttgctcct caccaatcga cccaatagct
     5461 gtatttctag aatcaataga tacactgcga tgatctccca ttacaaaata ttgaccttct
     5521 ggaacctggt acggtagttt aatatccgtt tgaccatagg ccttatcttt aacatagggt
     5581 tcgtctaatg tttttccatt tgcataaaca ttcccctgct catctatatt tacccactga
     5641 ccagaagttg ctactactct ttttaccaaa accttattat tgtagtagaa tgcaaccata
     5701 tctccagttg aaagtgtatt tgtcttcaca gttgccacca tatcacctgc tttcagagta
     5761 ggagacatgg aacttccata aatatgtaga actggcaacc ataacatggc tattaatact
     5821 gcaagtgcaa cgacagtaac aagcgtgaaa atagtatttt ttaatgtctc taaataccgc
     5881 tttttatatc gtattttatc cagctcctct gacattattg atatactggg taaatctgat
     5941 atggtaacat aatccttatt tttattagtc gccatcctca tctgttctcc ctatttcaca
     6001 attatcagat tgtttatgtg taactttttg aacttgttca agataaatat ttgcagccaa
     6061 ttgtgcttct tcaaaaatcc tagtaactgc tagagacgcc tccgctatcg aaccaatttc
     6121 tcccaaaacc gcttcgcgat actcaattct tttttccaaa tctactaatt ttgcttgata
     6181 agactctatt tcctttgcct gctcaaccaa gagttcaaat aattcagaac gcttcagttt
     6241 ttctaaggtc ttttgcattt aacattgctt cttcctctct cctttttgct tatattgctt
     6301 tcgctacaaa atatatgctt atttacttct aaatatcacc tatcaatcaa aacatataca
     6361 tttttgtgaa tataatatga tcaaattagc ctgtacgtga taccaaacca atccttagtt
     6421 tgtcaacaat gccaatttct taaaaaacac aaaaaaatca gaactttttg cacacatat
//
LOCUS       DASGBY010000106         6436 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.106, whole genome shotgun sequence.
ACCESSION   DASGBY010000106 DASGBY010000000
VERSION     DASGBY010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6436
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.106"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            30..347
                     /locus_tag="U1396_001589"
     CDS             30..347
                     /locus_tag="U1396_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5342767.1"
                     /translation="MYYPVSSILIEFLVLAIVEKQDSYGYEISQTIKIVADIKESTLY
                     PILKKLEKAGYVTTYTQEFQGRKRKYYTITPAGREHLPFLQGEWNSYKDHIDGIIEGS
                     LRK"
     gene            344..1456
                     /locus_tag="U1396_001590"
     CDS             344..1456
                     /locus_tag="U1396_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5342768.1"
                     /translation="MTRADYLNQLEQALFQLHPSARQEALDYFNEYFDEKDNDEEAII
                     ELGTPDEAAKEIIANLPEDALIPEKDQASPHSSKPFDFNFDFDFQFDWENFFNNFKHS
                     AYQARERIKLTSKIEELPEFSNLQISLEDQALSVQSYEGEAVLLHNPVSEDGSYQAFD
                     YQLVQDSLYISSKPTPNHLYFSNNQISSAILKIPKKLLPLTNLNLKTADSSLTIVDVQ
                     VCEQMVVNAKDSSISMTKVSCPSSALQLEDSTLTISDGQMSELKLEASDAVITLSSMS
                     LSDARITLEDCVWKLKDFVLEKSLNCQAEDSVLTYKPSTDISLDIWEEDSSLKLPKDK
                     AFTMMKEGDITHLSYKQENSPAQLVIHCQDCQLSVG"
     gene            1468..2046
                     /locus_tag="U1396_001591"
     CDS             1468..2046
                     /locus_tag="U1396_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM5342769.1"
                     /translation="MNRKEYLQNLEKYLKNLSKEDFQDTLDYFNEYFDEKDNDEEAII
                     ELGTPDEAAKEIIANLYDKERIEDKPNTSNMVWLTILAILAAPIGVPLAITLVALFIT
                     LLLIIFSLFLLLISLWIVLLSLAIAQLLLAFDLLTLSWSSSLLFTGLALVCLALTLLG
                     SKFTLDLGSKTFLLVLHWVQRKIRKGGYYETA"
     gene            2033..2886
                     /locus_tag="U1396_001592"
                     /pseudo
     CDS             2033..2886
                     /locus_tag="U1396_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917252.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
     gene            complement(2922..3281)
                     /locus_tag="U1396_001593"
     CDS             complement(2922..3281)
                     /locus_tag="U1396_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEM5342770.1"
                     /translation="MSIFTTILASIVAIEHLYIMYLETFATHSDSTSRVFNMEKEELQ
                     RKSVTTLFKNQGIYNGLLAVFLIYGIFTGNLEVTTIFVLFVIGAAGYGAATSSPKIIL
                     TQGGPAILALISILLFK"
     gene            complement(3301..3726)
                     /locus_tag="U1396_001594"
     CDS             complement(3301..3726)
                     /locus_tag="U1396_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5342771.1"
                     /translation="MQEMEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAP
                     LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP
                     SAHHQAIKTSMNQILTVEESEQFLATLDKLLIGLQNLPI"
     gene            3887..4645
                     /locus_tag="U1396_001595"
     CDS             3887..4645
                     /locus_tag="U1396_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM5342772.1"
                     /translation="MENTPRLNLVIDVLMLAGAILAQSGAEIHRVEDTMIRIAHSHGI
                     EQANVLAIPAAIFFSIDHTNISRMKRIVNSNYDMQKVCDVNQISRSLANEEISLEEAW
                     SQLNAIKQQKPPYNNIQITLAAVVAAPFFTIMFGGSLLDAAGAVLATALAFPISLIVE
                     RYIGIDFVTTFVGAFVFSLTSYLLSATTTLPINPNLINAGAVMPFVPGIAFTNAVRDL
                     MTNHINTGMTKFFQTALIILSLGAGTTVAFMLVG"
     gene            4649..5101
                     /locus_tag="U1396_001596"
     CDS             4649..5101
                     /locus_tag="U1396_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM5342773.1"
                     /translation="MTPVHFLLQALASYIAIAAFLIVLNVQRKMLVPGGLLGMLVWLI
                     YLLLLEPTNVLIATFFAAIIGSCVSQIMSIWLKTPSVIFSLAILAPLVPGYRAYMTTT
                     YFVSGDHAQALTNITTVLTLALVIPIGMASGTILLRLYKVLRTGKKAA"
     gene            5158..6396
                     /locus_tag="U1396_001597"
     CDS             5158..6396
                     /locus_tag="U1396_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM5342774.1"
                     /translation="MNQNVTNLKLAERGALLSIGAYIVLSGIKLVAGQLFHSDALRAD
                     AFNNISDIIGNIAVLIGLKMAQKPADTDHKFGHWKMEDLASLITSFIMFVVGFQVLYD
                     TLQKLISNSSVEVDIMGAIVGIFSALVMLAVYLYNNRLAKKVRSKALEAAAKDNLSDA
                     VTSIGTSIAIFAAAFNLPIVDKIAAIIITFFILKTAYDIFMESFFTLSDGFDENLLKK
                     YEEDILKLPKIVSVKSQRGRTYGANIYLDVVLEMNPDLSVYESHEVTEQVEQLLTLKH
                     GVFDVDIHVEPSEIPHDEMYEHVYDKLFRFETEIQAHANGYEELIDDQYLLIDAKGHY
                     RNKTQILADHPIQTTYLSNYQMTSISHKSKLVTFEIGEYVHTSLWRRHENWTVIFHQI
                     SKKQASQIEATEKISDLHNP"
BASE COUNT         1980 a         1445 c         1168 g         1843 t
ORIGIN      
        1 taattacata aagataaaga ggtgagttta tgtactaccc cgtatcctct atcttgatag
       61 aatttctggt attagccatc gtggaaaagc aggattccta cggctatgaa atcagccaaa
      121 ccatcaagat agttgctgat ataaaggaat ccacactcta ccctattttg aaaaaattgg
      181 aaaaggctgg ctatgtcacc acctataccc aagaatttca agggagaaag cggaaatact
      241 ataccatcac tcctgctgga cgtgaacacc tccccttcct gcagggtgaa tggaatagct
      301 acaaagacca tattgacgga attatagaag ggagcttacg aaaatgacac gcgcagatta
      361 tttgaaccaa ctggaacaag cattatttca acttcatcca agtgccagac aggaggcttt
      421 agactacttt aatgagtatt ttgacgaaaa ggataacgac gaggaagcta ttatagagct
      481 aggaacacct gatgaagcag caaaagaaat cattgccaat ctacctgaag atgccctaat
      541 ccccgagaaa gaccaagcaa gtccacattc atctaaacca tttgatttca actttgattt
      601 tgattttcaa tttgactggg agaatttttt caacaatttc aaacattcag cctatcaagc
      661 tagggaaaga attaaattga cgtcgaaaat cgaagaatta cctgagtttt caaatctaca
      721 gatttcgctc gaagatcagg cccttagtgt tcaaagttat gaaggagaag ctgtcttatt
      781 gcacaatcct gtttcagaag atggtagcta ccaggctttt gactatcaac tagtccaaga
      841 tagtttgtac atatctagca agcctacccc taatcacctc tacttctcaa acaatcaaat
      901 cagctctgct attctcaaaa tccctaaaaa actactgccc cttaccaatc tcaatctgaa
      961 aacggcagat agtagtctga caatagtgga cgtacaagta tgcgaacaga tggtcgttaa
     1021 tgcaaaagat agcagtatca gcatgacgaa agtgagctgc ccaagctctg ctctacagtt
     1081 agaagactct acactaacta tctcagatgg acagatgagc gagttaaaat tggaagccag
     1141 cgatgctgtt atcactctct caagcatgag cctttcagat gcaaggataa cattagaaga
     1201 ctgtgtctgg aagttgaagg attttgtcct tgaaaagagc cttaactgcc aggctgaaga
     1261 ttctgtctta acctataaac caagtacgga catcagtttg gacatctggg aggaagattc
     1321 tagccttaaa cttccaaagg ataaggcgtt tacaatgatg aaagagggtg acatcactca
     1381 tctcagctac aagcaagaaa atagccctgc tcagctagtt attcattgtc aagattgcca
     1441 gcttagtgtg ggataaagga ggtttccatg aatcgcaagg aatatttaca gaatctcgag
     1501 aaatatctca aaaacctatc aaaagaagat tttcaagata ccttggacta tttcaatgaa
     1561 tattttgacg aaaaggataa cgacgaggaa gctattatag agctaggaac acctgatgaa
     1621 gcagcaaagg aaatcattgc caatctctat gataaagaga ggattgaaga taagccaaat
     1681 acaagcaata tggtctggtt gaccatcctc gctatccttg ccgccccaat cggcgtcccc
     1741 ctagcaatca ccttggtcgc cctcttcatc acccttctcc taatcatctt tagcctcttt
     1801 ctgctcctta tctcactctg gattgtcctc ctcagcctcg caatcgccca acttctcctc
     1861 gccttcgacc tcctcacact ctcatggtcc tcctccctcc tcttcacagg cctggccctc
     1921 gtctgcttgg ccctcactct attgggtagt aaattcactc tagaccttgg aagcaaaacc
     1981 ttcttgcttg ttttacattg ggtacaaaga aagatccgca aaggaggcta ttatgaaaca
     2041 gcttaaacca tttacgaaaa tcagtctgag cctgctaggt cttggagcca ttctaagcct
     2101 cattggctac ctggctggcg gttggacaaa tatgaaaact gttgcagaaa actattttca
     2161 gccccaaacg gcaagcttta cggatattcg ttctatagag gtcaatgaaa aactgtccat
     2221 tatgccctcg cctgacaacc aattccacct ccactactat cgaaatcagc ataaagacat
     2281 tgacctcctc agtcaccaag tccaagatgg aaaattaacc atttctagtg cctatcaagg
     2341 catcgttact tatgatggtt tactcgaacc tatcttaaat cttgtcaatg accagaatgt
     2401 tgcctactac caacctgtct tacaggtccc taaaatagca caatcgaaac actctcaggg
     2461 agcattcaag gagatgtcta tctggataaa gtgactattc aagatttcca actctttgtt
     2521 gaaaatggtg acatgttgat tgaaaacagt cacatcagcc ttattaggct attacacatc
     2581 aatggagaag tagcaatcaa tcagtccaca ttaacaagtc cagcggacat caccgatact
     2641 accagaagta ttctaactgt tgaggatggt gattttaaag cagaaaacct aaaactagag
     2701 ggaaagcatg gcatcagtaa ttacgatggt tcaatcgaca tttctcttca tcccaaaaca
     2761 aaaactgaca tccatataga tgccagtcaa aataatctgg gaattgacct tccaacctat
     2821 tccaatcccc aagccactaa ttacctctat atctctacac tagatggaga actgaatatt
     2881 cagtaattgc aaaaagccct cctcacggaa ggctttttaa cttatttaaa caacaaaata
     2941 gaaatcaagg ccaagatagc tggtccacct tgggttaaga tgatttttgg actagaagtc
     3001 gctgctccgt agcctgctgc tccaataaca aacaagacaa aaatagttgt cacttcaagg
     3061 ttgcctgtga aaattccata gataaggaag acggccaaca aaccattata gattccctgg
     3121 tttttaaata gggttgtcac agacttacgt tgtaattctt ccttctccat attgaatacg
     3181 cgactagtag agtctgaatg ggtcgcaaag gtttccaaat acatgatata taggtgctca
     3241 atagctacga tactagctag aatagtggta aaaatagaca taatgtctcc tctcaaaaaa
     3301 ttatataggt agattttgca agccaatcaa cagtttatca agagtggcta ggaattgctc
     3361 gctctcctca acagttagaa tctgattcat cgaagttttg atagcttggt ggtgggcaga
     3421 aggattcgtg attagcgctt ctctagcctg ctcagttggc cagacaagta cttctctctg
     3481 attgtcagga tttcgcttgc gaatgatata gccgctctct tccaacaatt tgagatgacg
     3541 cgtaaccgct gcgcggtcta tctgaagccg ctcctgcaaa gccaactgat gcaggggtgc
     3601 atcttttagt aatgtttgca atattgaata gcgtgtcaaa ctgattccca actgcttttc
     3661 aaaaagattg gaaatcgtct catctgccac tttcaatctg tataacaaat cttccatttc
     3721 ttgcattatc tacctctttt gattgattaa tcaatcattg ataagtcaat tatactataa
     3781 tccgaacaat tttcaactat tttgcctctc tataaaaaaa tatgttgcct acacctatat
     3841 tttgttataa ttaagaaaat aactagcaga gggatgggac ttacttatgg aaaacactcc
     3901 tagactaaac ttggtcatag acgtgctcat gctcgctggt gccattttgg cacaaagcgg
     3961 tgcagaaatt caccgagttg aagataccat gattcgtatt gcacattcac acggaattga
     4021 acaggctaat gtccttgcca tccctgctgc tatctttttc tccatcgacc atacgaatat
     4081 ttcgcgtatg aaacgcattg tcaattcaaa ttacgacatg cagaaagttt gtgacgtcaa
     4141 ccaaatctcc cgttccctag ccaatgaaga aatcagccta gaagaagctt ggagccaatt
     4201 aaatgcaatc aaacaacaaa agccacctta taacaatatc caaataacct tagctgccgt
     4261 agtagccgct ccatttttta ccatcatgtt cggaggttct cttttagatg cagcaggtgc
     4321 tgtcctcgca acagctttag ctttccctat ctcactaatt gtcgagcgct atattggaat
     4381 tgattttgtc accaccttcg ttggcgcctt tgtcttctca ctcacctctt atttattaag
     4441 cgcaaccact actctcccca ttaatcctaa cctgattaat gcgggggcag tcatgccttt
     4501 tgtaccaggg attgctttta caaatgctgt aagagacctc atgaccaatc atatcaatac
     4561 agggatgacc aaatttttcc aaactgcgct tattatctta tcgctcggtg caggtacaac
     4621 tgtggccttt atgcttgtgg ggtaatctat gacaccagtt cacttcttat tacaggcact
     4681 cgcctcttat atcgctatcg cagccttctt aattgttctc aatgttcaaa gaaaaatgct
     4741 ggtccctggt ggactcctag gcatgcttgt ttggcttatt tatcttttac tattggaacc
     4801 aacaaatgtc ttgattgcta cctttttcgc ggcaattatc ggatcctgtg tcagtcaaat
     4861 catgagtatt tggttaaaaa caccctccgt catcttttca ttggctatac ttgcaccact
     4921 tgttccaggc tatcgagcct acatgaccac gacttatttc gtttctggag accacgctca
     4981 agccctaacc aatatcacta ccgtcttaac tttagcctta gtcattccca tcggtatggc
     5041 cagcggaaca atattattac gcctttataa ggttcttcga accggcaaaa aagcagccta
     5101 accccttgaa aataaggggc ctttttgtta aaatgaaaac ttatcaaagg agatgctatg
     5161 aaccaaaacg taaccaatct aaaacttgct gaacgtggtg ccttgctatc tatcggtgcc
     5221 tatattgtct tatcaggtat caaactcgtt gcaggacagc tctttcattc agatgcctta
     5281 cgagcagatg ccttcaataa tatttctgat attatcggta atatcgctgt acttattgga
     5341 ctaaaaatgg cacagaaacc agctgatacc gatcataaat ttggacactg gaaaatggaa
     5401 gacttggcaa gcttgattac atccttcatc atgtttgtcg ttggtttcca agtactctat
     5461 gataccctcc aaaagctaat cagcaattct tctgtcgaag tagacattat gggggctatt
     5521 gtcggaattt tttctgcact agttatgtta gctgtttatt tatataataa ccgcttggca
     5581 aaaaaagtac gttccaaggc cttagaagca gctgccaagg ataatctatc cgatgcagtc
     5641 acttccatag gaacttctat cgcgatcttt gctgcggctt tcaacctccc tattgtcgat
     5701 aaaattgcag ccatcatcat taccttcttt atcctaaaaa cagcctacga tatttttatg
     5761 gaaagcttct ttaccctatc tgatggattt gatgaaaact tattgaaaaa gtacgaggaa
     5821 gatattctca aactcccaaa aatcgtttct gtcaaatcac aacgtggtcg gacttatgga
     5881 gccaatatct accttgatgt tgttttagaa atgaatccag acttatccgt ttatgaaagt
     5941 catgaagtga ctgagcaggt tgagcaactc ctaacactca aacatggagt ttttgatgtg
     6001 gatattcacg tagaaccatc tgaaattcca cacgatgaga tgtatgagca tgtgtacgac
     6061 aaactcttcc gttttgaaac agagatacaa gcacatgcta atgggtatga agaattgatt
     6121 gacgaccagt atctcttaat tgatgccaaa ggccactacc gaaataaaac tcagatactt
     6181 gccgaccacc ccatccaaac gacgtattta tcaaattacc aaatgacatc tattagccat
     6241 aaatcaaaat tagttacgtt tgaaattggc gaatatgttc atacgtcact ttggcgccgt
     6301 catgaaaatt ggactgttat tttccatcaa atttcaaaga aacaagcctc tcagatcgaa
     6361 gctactgaaa aaatctctga tttgcataat ccataataaa aaataggaat tttccctgga
     6421 ttatagggag aattcc
//
LOCUS       DASGBY010000107         6426 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.107, whole genome shotgun sequence.
ACCESSION   DASGBY010000107 DASGBY010000000
VERSION     DASGBY010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6426
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.107"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            42..1988
                     /locus_tag="U1396_001598"
     CDS             42..1988
                     /locus_tag="U1396_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS beta-glucoside transporter subunit IIBCA"
                     /protein_id="HEM5342775.1"
                     /translation="MDYKKVSAEVIEAVGKDNLVAAAHCATRLRLVLKDESKVNQKAL
                     DDNADVKGTFSTNGQYQVIIGPGDVNFVYAELIKATGLKEVSTDDLKQIAAQDKKFNP
                     LMDLIKLLSDIFVPIIPALVAGGLLMALRNFLTSPDLFGPKSIEEMYPAIQGISAMIQ
                     LMSAAPFMFLPVLVGISAAKRFGANQFLGAAIGMIMTTPDLGGKEAFWDIFGFQVAQT
                     NYAYQVIPVLAAVWLLATLEKFFHKKLPSAVDFTFTPLLSVMITGFLTFTVIGPVMLT
                     VSDAITNAIVWLYDTTGALGMSIFGGTYSLIVMTGLHQSFPAIETQLLSAYNNNGTGY
                     GDYIFVVASMANVAQGAATLAIYFLTKNAKTKGLSGSAAVSAFLGITEPALFGVNLKY
                     RFPFFCALAGSAIGALFAGLTHVIAVSLGAAGFIGFLSIKASSIPMYVVAEVIAFAAA
                     FAFTYVYGKTKASAVFADEAATAAAAAVTASVVETSEEVEETAEIFTAQETLVSPLSG
                     DVVALENVNDPVFSSGAMGKGLAVKPSEGVVYAPADAEVTIAFETGHAYGLKTASGAE
                     LLIHIGIDTVSMNGNGFEKLVAAGDKVKAGTPIAKFDATKIAEAGLDDTTMIIVTNTA
                     DFAEVSPLAEGTIAHGVEFLKVAK"
     gene            2116..3000
                     /locus_tag="U1396_001599"
     CDS             2116..3000
                     /locus_tag="U1396_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM5342776.1"
                     /translation="MTKLYGSLEAGGTKFVCAVGDENFQVVEKTQFPTTTPYETIERT
                     VEFFKRYEDRLAGIAIGSFGPIDIDQNSQTYGYITSTPKPHWSNIDLLGLIAKEFNIP
                     FYFTTDVNSSAFGETLVRKGVKSLVYYTIGTGIGAGAIQNGEFIGGLGHTEAGHTYVA
                     LHPYDVKHEFKGMCPFHNGCLEGLAAGPSLEGRTGIRGELIELNSDVWDVQAYYIAQA
                     AVQATLLYRPQVIVFGGGVMAQEHMLNRVREKFVGLMNDYLPTPDVKEYIVTPAVAEN
                     GSATLGNFALAKQVSRNS"
     gene            3614..6367
                     /locus_tag="U1396_001600"
     CDS             3614..6367
                     /locus_tag="U1396_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM5342777.1"
                     /translation="MIPIQQHGKRWLILTLTLSTSVLALASIGASQPVVFADENSHLQ
                     SQKNINKIEVLDWKTFSKKLSEYSSDQRQFHVLKLGFENRLGTLSTWDELEEFGKNNN
                     FLVINGKVTQNIHDFPHILVMNKGDVIAHNEEDYHNQMRELRFSGNGDLHNSMEPKRI
                     HALFKIELDSNKRQLLNAAGLGTAENSLKNINGMTIYSHGLTVDNKYYEDYSKYTHNS
                     VKNINVTKERFIANDDLIHKLIESSEAMKQSSERDKVKAFVQYVANHTTYDWEAANKA
                     VQNYADINYYLGSDLFAVTERQKAMCVGFSTTAARAFNMLGLPAYVVVGKNAEGVPHA
                     TARVYYDKKWHTIDGTGFITDITDSNKHQRSAKYSEKHFSTIGEDSYDVVEAGQEPKA
                     ERNYMIIDSNYESWAMKQKTADLLLFNKEKSLVGLDHIAYVEPTYITENKKNHLLDIY
                     KALKGKVEEAKATDTDDKDDKQEGYNRVLQFVNSDIDKLSTLSKITEEEFKALENSMD
                     LARVFLGQMNAKAGKEFSEGETYQSYLKNRQKNNTNSDDDRNRNELQENQANSDEVSQ
                     NSKDASAPSVNSAQHSEELEGTPSTQETISAAPSQQTPVAPKALQAKTELEDKTETSS
                     GSFERESNEVSANTVLSPEITKNTGSLASVESRVEEAVDRTTPSEKVSAESEEVEKTI
                     VSEVSLDASLANENKNSDAQEDTPRLEKSAEVVTTSQEVAEAPVSAPQVSSEIPTSPE
                     TNSTEAVTTSQEMAESRVSAPQVSFVSPTLEVPKNERLDEKADATMPNGVGANTHEAG
                     SVPTSDIYVQDAGSDTVPQPYSLSATLFEEAISTVEPVGVATSSQERSAVAGKVKVPA
                     SLERSNNSVEEEKVVDSNATIEKRATEKKEVLTSENVLNSLVTIWVALSTSFFMRYFS
                     RGK"
BASE COUNT         2010 a         1112 c         1393 g         1911 t
ORIGIN      
        1 gaaaacactt tcaaaaatat acaaaaagga gatttttgta aatggattat aaaaaagttt
       61 ctgccgaagt gatcgaagcg gttgggaaag ataatctagt tgcggcagca cactgtgcta
      121 ctcgtcttcg tttggttctg aaggatgaat ccaaagtgaa ccaaaaagcc ctcgatgata
      181 atgcagatgt caaagggaca ttcagtacga atggtcagta tcaagttatc atcggacctg
      241 gtgatgtaaa ctttgtatat gcagagctca tcaaggctac aggcttaaaa gaagtttcaa
      301 cagatgattt gaaacagatt gcagcgcaag ataagaagtt caatccattg atggacttga
      361 tcaagctctt gtcagatatc tttgtgccaa tcattccggc tctcgttgct ggtggtctat
      421 tgatggcgct tcgtaacttc ttgacttccc cagatttatt tggtccaaaa tcaattgagg
      481 aaatgtatcc tgctatccaa ggcatttctg cgatgattca attgatgtca gcagctccat
      541 tcatgttctt gccagtcctt gtaggtatct ccgctgcgaa acgctttggt gcaaaccaat
      601 tcctcggtgc ggctattggt atgatcatga ccactccaga tttgggtggt aaagaagctt
      661 tttgggatat ttttggtttc caagtagctc aaacaaacta tgcatatcag gttattccgg
      721 ttcttgcagc agtatggctt cttgcgacgc ttgaaaaatt cttccacaag aagttgccat
      781 cagcagttga ctttacattc acaccattat tgtcagtaat gattacaggt ttcttgacat
      841 ttacagtcat cggtcctgtg atgttaaccg tatctgatgc gattactaac gcaattgttt
      901 ggttgtacga tacaactggt gcgttgggta tgagtatctt tggtggtact tactcattga
      961 tcgtaatgac tggtcttcac caatcattcc cagccatcga gacacaactt ttgtctgctt
     1021 acaacaataa tggtacagga tacggagact acatctttgt agttgcttca atggctaacg
     1081 ttgcacaagg tgctgcaact cttgctatct atttcttgac aaaaaatgca aaaacaaaag
     1141 gtttgtccgg ttcagcagca gtttctgcct tccttggaat tacagaaccg gccctcttcg
     1201 gggttaactt gaagtacaga ttcccattct tttgtgctct tgcaggttcg gctatcggtg
     1261 ccctctttgc aggtttgact catgttatcg ctgtatctct tggggcagca ggtttcattg
     1321 gattcctctc aatcaaagca tcttctatcc caatgtatgt agttgctgag gtgattgctt
     1381 ttgctgctgc ctttgccttt acttacgttt atggcaagac aaaagcatca gcagttttcg
     1441 ctgatgaagc agcaacagca gctgcggcag cagtgacagc gtctgtagtt gaaacttcag
     1501 aagaagttga agaaactgca gaaatcttta ctgcacaaga aactcttgta tctccacttt
     1561 caggtgacgt tgttgccctt gaaaatgtta atgacccagt cttctcatca ggagctatgg
     1621 gtaaaggttt ggctgttaaa ccgtctgagg gtgttgttta cgctccagca gatgcagaag
     1681 taacaattgc ttttgaaaca ggccatgctt acggattgaa aacagcgtct ggtgctgaac
     1741 ttttaattca catcggtatt gatactgtat caatgaacgg taatggattt gaaaaattgg
     1801 tggcagcagg tgataaagta aaagctggta ctccgattgc taaatttgat gcaactaaga
     1861 ttgcagaagc aggtcttgat gatacaacca tgatcatcgt gaccaacaca gctgactttg
     1921 cagaagtatc tccacttgca gagggaacaa tcgctcacgg tgtagaattc ttgaaagtag
     1981 ctaagtaatc ttatataaaa tcgatttgta gagtctgcct ctactacata attaacagga
     2041 aaaaggcttt cagccttttt cttctgtttg cttatatgtt ataataaaag tgataaaaat
     2101 tttggagaca atcaaatgac aaaattatat ggtagtttag aagctggtgg tacaaagttt
     2161 gtttgtgcag taggtgatga gaactttcaa gttgttgaaa aaacgcaatt tccaacgaca
     2221 actccttatg aaacgattga gagaacagtt gaattcttca agcgctatga agatcgtttg
     2281 gcaggtattg cgataggttc tttcggtcca attgatattg atcaaaactc acagacttat
     2341 ggttacatca cttcgacacc aaaaccacac tggtcaaata ttgatttact tggtctgatt
     2401 gctaaggaat ttaacattcc attctacttc acgacagatg tgaattcatc agcttttggt
     2461 gaaaccctgg ttcgtaaagg ggtaaagagc ttggtttact atacaatcgg tacaggtatt
     2521 ggtgcaggtg ctattcagaa tggtgagttt atcggtggct tgggtcatac cgaagcgggt
     2581 catacttacg ttgccctaca cccttacgat gtaaaacatg aatttaaagg gatgtgtcca
     2641 ttccacaatg ggtgtttgga aggcttagct gcaggtcctt ctcttgaagg ccgtacaggt
     2701 attcgtggtg aattaatcga gttaaattca gacgtttggg atgtgcaggc ttactacatt
     2761 gctcaagcag cagtacaggc aaccttgctt tatcgtccgc aagtcattgt atttggtgga
     2821 ggagttatgg ctcaagagca catgcttaat cgtgtacgtg agaagtttgt cggtttgatg
     2881 aacgattatc tcccaacacc agatgtcaaa gaatatatcg taacgccagc tgttgctgaa
     2941 aatggttctg caactcttgg gaattttgct ttggcaaaac aggtgtcaag aaattcataa
     3001 ttgtttatgt gaacagattc atttgtactt tggcgataga tatattgaag aagaatattg
     3061 ggtgaagttg ttttattatc acaataactt gacagtgagg tgagagtttt tatgtaactc
     3121 tcacctcttt ttacctaaaa aactgtattc ataagagata gccgtttgtt aatcaaggca
     3181 gtctttggga gtaggaaaga atcagaccgg cttaaaaaga gttcgtcaac aactctttaa
     3241 tttaagtttt tgagccgaaa cagcgcctca aaaaactaac gatgaccata aaagattaga
     3301 gtttgccatt gttggagttc atcgggtatg aaaaagagaa acgagttcca caacttttga
     3361 tgattattca taagcaaggt tgaaaatctt tttattggcg atagtgtagt gatatttttt
     3421 aaccagagga aagttgttgt ttctcaattg tatgaaaacg ctatatctaa agtaatgatg
     3481 cggagacact aaagtctata aaaacaggaa aagcacagat agatagcaga aaaaagatag
     3541 ttaaaagtgt tacaattggg atgcaaattt taggctggga aattattctt agaagtattt
     3601 atatggagga cttatgattc caattcaaca gcatggtaag cgctggctta ttttgacact
     3661 taccctttct acttcagttc ttgcgcttgc atctatcgga gcatcacaac cggttgtttt
     3721 tgcagatgaa aactcacatt tacaatcaca aaaaaacatt aataaaatag aggttctgga
     3781 ctggaaaaca ttttctaaaa aattgagcga atactcctcg gaccaacgac aatttcatgt
     3841 tttgaaattg ggatttgaaa atcgtcttgg gacattatca acttgggatg aattggaaga
     3901 atttggtaaa aacaacaatt ttttggtaat caatggtaaa gttactcaaa atattcatga
     3961 ctttccacat atccttgtta tgaacaaggg tgatgttatt gctcataatg aagaagatta
     4021 tcataatcag atgagagagt tgaggttttc gggaaatggc gacttacata atagtatgga
     4081 gccaaaacgg attcatgcac tatttaagat tgaacttgac tccaataaac ggcagttatt
     4141 aaatgctgcg ggtctaggaa ctgctgagaa tagtttgaaa aatattaatg gaatgactat
     4201 ttactcgcat ggtcttacgg ttgataataa gtactatgag gattatagta aatatactca
     4261 taattcagtt aaaaatataa acgttaccaa agagcgtttt atagcaaatg atgacttgat
     4321 tcataagttg atagagtcct cagaagctat gaagcaatca agtgaacgcg ataaagttaa
     4381 ggcatttgtt cagtatgttg ccaatcatac aacatatgat tgggaagctg ctaataaggc
     4441 tgttcaaaat tatgcagaca tcaattacta cttaggatca gatttgttcg cggttactga
     4501 acgtcagaaa gcgatgtgtg taggtttcag cactactgcg gcccgtgcat ttaatatgtt
     4561 agggcttcct gcttatgttg ttgttgggaa aaatgcagaa ggagtcccgc atgctacagc
     4621 gcgtgtttat tatgataaaa agtggcacac cattgacggt acaggtttta ttacagatat
     4681 tactgattct aataagcatc agcgctcagc taaatatagt gaaaaacact tttctactat
     4741 cggtgaagat agttatgatg ttgttgaggc aggacaggag cctaaggcgg agcgtaacta
     4801 catgattatt gatagtaatt atgagagttg ggctatgaaa caaaaaacag cagacttact
     4861 gttgttcaac aaagaaaagt ccttggttgg tttggatcat attgcatatg ttgagccaac
     4921 ttatataaca gaaaataaga aaaatcattt gctagacatc tataaagctt tgaaaggtaa
     4981 ggtagaagaa gcgaaagcaa cggatacaga tgataaagat gataaacaag aggggtataa
     5041 tcgtgtttta caatttgtca attctgatat tgataaattg agtactctct ccaagattac
     5101 ggaagaagaa tttaaagcac tcgaaaattc aatggattta gctcgagtgt tcttggggca
     5161 aatgaatgcg aaggctggaa aagaattttc ggaaggagaa acttatcaaa gttatctaaa
     5221 gaatcgtcag aaaaataaca caaattctga tgatgataga aaccgaaatg aattgcaaga
     5281 aaatcaagct aattctgatg aagtcagcca aaattccaag gatgcttcag ctccaagtgt
     5341 taattctgca cagcactctg aggagcttga aggaactcct tcaacacagg aaacaatctc
     5401 agctgctcct tctcaacaaa caccagtagc tcctaaggca ctacaagcta aaactgagtt
     5461 agaggataaa acagagactt catctggttc ctttgagaga gaatcgaatg aagtgtcggc
     5521 taatacagtt ttgtctcctg aaataactaa gaacacggga agtctagctt ctgtagaatc
     5581 tcgagtggag gaggctgtgg ataggacaac tccatcagaa aaagtttctg ctgaatcaga
     5641 agaagtagaa aaaacaattg tatctgaggt atcattggat gcttcattag caaatgagaa
     5701 caaaaattct gatgctcaag aagatactcc acgtttggag aaatctgccg aggtggtaac
     5761 aactagtcaa gaagtagctg aagcaccggt ttctgctcca caagtaagtt ctgaaatccc
     5821 aacttcaccg gaaactaatt ctacagaggc agtaacaact agtcaagaaa tggctgaatc
     5881 acgggtttct gctccacaag tgagttttgt atcgcctact ttagaggttc ctaaaaatga
     5941 gcgtttagac gagaaagcag atgcaactat gccaaatgga gttggagcaa atactcatga
     6001 ggcaggttct gttccgacat cagatattta tgttcaagat gctggttcag acacggtgcc
     6061 tcaaccttac tctttatctg cgacattgtt tgaagaagca atttcaacag ttgagcctgt
     6121 aggtgttgca acttcttctc aagagagaag tgcagtagct ggcaaggtga aagtgcctgc
     6181 ctctcttgaa cgtagtaaca attctgttga ggaggaaaaa gtagttgatt cgaatgcaac
     6241 aattgagaaa cgagcgacag agaaaaaaga ggtccttact tcggaaaatg tacttaatag
     6301 cttagtaaca atttgggtag ctttatctac tagtttcttc atgagatatt tttctcgagg
     6361 aaaataatat attaacacag gttgaagata atatttatct ttgtgtagaa aattattcat
     6421 gtgagc
//
LOCUS       DASGBY010000108         6378 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.108, whole genome shotgun sequence.
ACCESSION   DASGBY010000108 DASGBY010000000
VERSION     DASGBY010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6378
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.108"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            59..1849
                     /gene="dnaG"
                     /locus_tag="U1396_001601"
     CDS             59..1849
                     /gene="dnaG"
                     /locus_tag="U1396_001601"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM5342778.1"
                     /translation="MLSKDKITEIKQALNIVDVIGETVALTKAGRNYVGLCPFHGEKT
                     PSFNVIEDKQFYHCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQTDVTPSYHQ
                     EEKRVSPHQVLYDIHRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAP
                     AEQNILYQKLSGQYDEESLLNSGLFNPSENNIIYDAFQARIIFPLADEYGRIVAFSGR
                     IWTEENRNNKQLAKYKNSRSTAIFNKSYELYHLDKAKAVIKKQRETYLMEGFLDVIAA
                     HRVGIDNAVASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE
                     IVSLPDNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDK
                     IAPIIAKVSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTG
                     QSYLPPVQTIARITSLIRTENHLLYRMVEHPYILNEFRLREDFYFAMPELQAIYDMLK
                     KSGEITSFELSQLNDSAQQAWYRMQEERLPDEVSPHEIEELEIRRDKELLKKENQHLA
                     RKIREHSHVGNADIALDELQKLLDRRRQME"
     gene            1852..2970
                     /gene="rpoD"
                     /locus_tag="U1396_001602"
     CDS             1852..2970
                     /gene="rpoD"
                     /locus_tag="U1396_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEM5342779.1"
                     /translation="MTNKKDKKTEVTTFDVQVAEFIRNHKKQGSATDDEINDQLVIPF
                     TLDADGIDDLLQRIQDAGISIVDKEGNPSARAMQVEEEPELSDEELLGSTSAKVNDPV
                     RMYLKEIGVVPLLTNEEEQELALAVEAGDPEAKQRLAEANLRLVVSIAKRYVGRGMQF
                     LDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVET
                     INKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDS
                     HLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLED
                     VGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED"
     gene            3355..3678
                     /locus_tag="U1396_001603"
     CDS             3355..3678
                     /locus_tag="U1396_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEM5342780.1"
                     /translation="MTYTEDQIKDIQERIFHALEDVIDPELGIDIINLGLIYEIRFIE
                     GKAEIDMTLTTMGCPLADLITDQIHDVLKDVPEVTEVDVRLVWSPAWTVQKMSRYARI
                     ALGIK"
     gene            3859..4016
                     /locus_tag="U1396_001604"
                     /pseudo
     CDS             3859..4016
                     /locus_tag="U1396_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373723.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(4103..5233)
                     /locus_tag="U1396_001605"
                     /pseudo
     CDS             complement(4103..5233)
                     /locus_tag="U1396_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
     gene            5329..5652
                     /gene="tnpA"
                     /locus_tag="U1396_001606"
                     /pseudo
     CDS             5329..5652
                     /gene="tnpA"
                     /locus_tag="U1396_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373723.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(5792..>6378)
                     /locus_tag="U1396_001607"
     CDS             complement(5792..>6378)
                     /locus_tag="U1396_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEM5342781.1"
                     /translation="FWQKTIQVLSILTLIGTAIFLFWLYKIGILNDQNVLSDLIKSQG
                     ALGSLSFLAIQIIQVVFPIIPGGVTTVVGFLVFHFWWGFFLNYLGISIGSIILFWLAH
                     RYGKKFCLLFMSEDTFYKYESKIDNKRSYEIFFILCMLSPISPADIVVMITGLTSMSY
                     RKFIMITLLCRPFSVVAYSFFWIYGSQWLQQLLG"
BASE COUNT         2006 a         1230 c         1336 g         1806 t
ORIGIN      
        1 taaactaagg ggagagtgtt cactttttaa attagctagt atgatatgag gagggaatgt
       61 gctttcaaag gataaaatta ctgaaataaa acaagctctc aatatcgttg atgttattgg
      121 tgaaacggtt gctttgacta aggccggacg taattatgtc ggtctttgcc cttttcatgg
      181 ggagaaaacc ccatctttca atgtgattga agataagcag ttctaccatt gttttggatg
      241 tggtaagtcc ggagatgtat tcaagtttgt cgaagaagtt cgtggtgttt cttttgcaga
      301 tgcggcagct atcttagctg agaaggcagg gtttcaaaca gatgtaactc cttcctatca
      361 tcaagaggag aaaagggtta gtccgcatca ggtactgtat gatattcatc gggatgctgc
      421 aaagttttat catgcccttt tgatgacaac caaaatgggt gaggaagcta gagcttatct
      481 acaccaacgt ggcttgacag atgatgtcat aaaaacattc cagctaggct tagctcctgc
      541 cgaacagaat attctttacc aaaaactatc aggtcaatat gacgaagaaa gtctattgaa
      601 ttcgggtttg ttcaatccaa gtgagaataa tattatttat gacgcctttc aagcgaggat
      661 tattttcccc ttggcggatg aatatggtcg aattgtagct ttttcaggtc ggatttggac
      721 cgaagaaaat cgaaacaata aacaattagc taagtataaa aactctcgta gtactgcgat
      781 tttcaataaa agctatgaat tgtatcattt ggacaaggct aaagcggtta ttaagaagca
      841 acgtgaaacc tatctcatgg aaggttttct agatgttatt gctgctcatc gtgtagggat
      901 tgataatgca gtggcttcca tgggaacagc tttgacaaga gagcatgttg cacacctagc
      961 taagttttgt aagaaaattg ttctgactta tgatggggat aaggctggac aggctgctac
     1021 catgaaagcg ttggacgaac tacaagattt tcaggttgaa atcgtgagct tgccagataa
     1081 tatggaccca gatgaatttt tgcagaaaaa ttcggaagaa gccttgcaac aggttttaac
     1141 caagtcacga atcagcgatg tagaattttt gattcaatac ttgaaacctg aaaatcctga
     1201 caatctacaa atgcagattg agtttgtaga taagattgca ccaattattg ccaaagtatc
     1261 atccattaca gctcaaaatt cttatattta taaggtggcg gatttacttt ctgactttga
     1321 ttataatcag gtggaacagg cagtaaatgc tgttcgtctg aaccagcgcc aggagagaac
     1381 acaacaggta tttcaatcac agactggtca gtcttatttg ccaccagtcc aaacgattgc
     1441 tcgtataacg agtcttattc gaacagaaaa ccatttactt tatcggatgg ttgaacatcc
     1501 ttatattctc aatgagttcc gtttacgaga agatttttat tttgcgatgc cagaattgca
     1561 agctatttat gatatgttaa aaaaatctgg ggaaattacc agttttgaac tatcacagtt
     1621 gaacgattcc gctcaacagg cttggtatcg tatgcaggaa gaacgtttac ctgatgaagt
     1681 gtctccacac gaaatcgaag aattagaaat tcggcgagac aaggaattgt taaagaagga
     1741 gaaccagcac ctagcacgga aaatccgtga acattcccat gtgggaaatg cagatattgc
     1801 cctcgatgag ttgcaaaaac tcctcgatag aagaagacaa atggagtaaa tatgacaaat
     1861 aaaaaagata aaaaaacaga agtaactact tttgatgtac aagttgccga atttatccgt
     1921 aaccataaaa aacaaggttc agctacagac gatgaaatca atgaccaact ggttattcca
     1981 tttacgcttg atgctgacgg aatcgatgat ttgctccaac gtattcagga cgcagggatt
     2041 tcgattgtcg ataaagaagg gaacccttct gctcgtgcta tgcaggtaga ggaagaacca
     2101 gaattatctg atgaagaatt gctcggaagc acttctgcaa aagtgaacga tccagtccgc
     2161 atgtatttga aagaaattgg tgttgtacct cttttgacca acgaggaaga gcaagaattg
     2221 gcattggcgg tcgaagcagg tgacccagaa gcgaaacaac gtttggctga agccaacttg
     2281 cgtttggttg tatccattgc caaacgctat gtcggtcgtg gtatgcagtt ccttgacttg
     2341 attcaagaag gaaacatggg cttgatgaag gccgttgata agtttgacta ctctaaaggt
     2401 ttcaaatttt caacttatgc aacctggtgg attcgtcagg ctatcactcg tgccattgcg
     2461 gaccaagcgc gtacaatccg tatccctgtt cacatggtag aaaccattaa caaattggtc
     2521 cgtgaacaac gcaatctctt gcaggaattg ggccaagatc caactcccga gcaaatcgct
     2581 gagcgtatgg atatgacgcc tgagaaagtt cgtgaaatcc tcaagattgc acaagagcct
     2641 gtctcgctcg agaccccaat tggtgaagaa gatgatagtc atcttggaga ttttatcgaa
     2701 gacgaggtca ttgaaaatcc agttgattac acaactcgtg tcgttcttcg tgaacagtta
     2761 gatgaggtat tggatactct tactgaccgt gaggaaaacg tattgcgtct tcgttttggt
     2821 ttagatgatg gtaaaatgcg cacgcttgaa gatgttggca aagtctttaa cgtaacccgt
     2881 gaacgcatcc gccaaatcga agccaaagcc ctccgtaaac tccgccaccc atcccgcagc
     2941 aaaccactca gagattttat tgaggattag aaaggtactg cgtacctttc taacgcctgc
     3001 ccagaaataa gaaagcaggc taacccagtg gtgttttaac ccgagcctag aaataggaaa
     3061 gcgaggctaa tctccggggg aggtgatcga cgtttctcat atcattcgac cataatgatg
     3121 tgagaaacta gtaagtcgtc taggcaattc tattgggaat tgccgttagt tgagtagctt
     3181 ttcaaagcac tcaactttgg cgagttgaac cgctcgctga aaacaggaaa cgagcgagat
     3241 tttaaccgct ccccttgaaa ttagaaaggg agcgtaacgt ccagtggact ttttgacaca
     3301 aacttcgttt gtttcttttc tagtattgaa cttgtgaaaa agaaagagag aaaaatgacg
     3361 tacacagaag atcaaattaa agacattcag gagcgtattt ttcatgctct tgaagatgtg
     3421 attgaccctg agctaggtat tgatattatc aatttagggc taatttatga aatccgattt
     3481 attgagggca aggctgaaat tgatatgacc ttgacgacca tgggttgtcc attagctgat
     3541 ctaattaccg atcaaattca tgatgtattg aaggatgtcc ctgaagtaac agaagtagat
     3601 gtgagactgg tttggtcacc agcttggacc gttcaaaaaa tgagtcgtta tgctcgaatt
     3661 gcattaggaa ttaaataaaa aaacaaaatg gtttcgaacg tttgaagccg tttttttatt
     3721 atggcttcga gccagttttt ctcgtagaga aaaacaagaa agccaccagc tatgctggtg
     3781 gctgccaagg ctttgagttt ccatttcttt ttcctgttat aatctaattg ttcaggttag
     3841 atcaaggagg aaaaagaaat ggctaaaacc agttacagtt tatcacatac taaatggatg
     3901 tgctctatca catagttttc acacctaagt accgtagaaa atccatttac tacaaaataa
     3961 ggcaggactt aattgatatt ttccgtcatc tatgtcgatg caaaggcgtg gacatcacgt
     4021 catacgcatg aaaaatttct tctctccttt tgtccccgga aataactgct ttaaacttag
     4081 tatctacctt tttacaagca ccttatcccc gatttccaaa taattgtggc aaataatcct
     4141 ccaaatggac agaaatatag cgttgtttgc ggcggtaact caatttctcc ttagggaagg
     4201 tcatcatttg taagagatga agacaagcct tacgaatagc atttaaattg aaagcagctc
     4261 gtttatctaa ggtttggttc ttatcttctc ggtaaaccac atctaacaac caatgtaggc
     4321 tctcaaccga ccaatgacca cgaacaactt gagaaaaagt ttgcacatcg cccttgaaac
     4381 taaggataaa gtaacggacc tcttcagtga tgacaccatc tttatcaatg atattcttag
     4441 tcataccaat cccacgaagt tttttccatt tcggatgtcg ttggctcagc catttcacat
     4501 cgtgagaaac ccagtagtcc ctcacctcaa tctgactgcg tgccttttca atggtctgat
     4561 aatgacagcc tttctctgtc aacgtagata acaatttggc gtcactaaaa tagaggtcaa
     4621 tatcctcatg gagattgcct tgatttcctt tgactgccaa gcaataatca cccttaccgc
     4681 tgataatcac atccgcaatg tctgtctagg tgcccatggc atcaatcgtg acaacactct
     4741 tacgaaggtc tagctgacac aagaggcgag gaatggctgt gatttcatta cttttatcct
     4801 caacagctac ctgcccaagg ctaatccgat taccaccatc ataagcagtg acaatatgag
     4861 taggagattg gtgtttccct cggttccccc gaatcgtttt tccgtcaacg gcaatcaatt
     4921 ttgaaaaatc agttgtttcc gaactagctt cgaaggacag tttcagttcc tttaagaaat
     4981 ctggattgac catactcaca acacgttcca aggtgtcatg agaaggacaa ccagcactca
     5041 agtcaacgta ttctctcaag acagattcgt tcatttctat gaaatcttcc atctctttcc
     5101 acgtttcaac ccctgctaat tgacaagcga aaaccagaaa cagaatggta gatagaggat
     5161 atcggatttt ccatgcttga cggctatcat actcttcttt gtgctcttct atggataaaa
     5221 gaaaatcaat caaagtagtt cacctctatt ctagtgtact actttgattg atatttggtt
     5281 atgatttccg ctttctgaaa acgatttttt cttcatgcgt ttggcgtggt ggaaatcatt
     5341 gagggacaca tgatgccaga ccatgttcat atgcttgtct tgatatcccc aaaactttcg
     5401 atttccgatt ttatgggata tttgaaaagt aaaagtgctc tcatgatatt tgataaacat
     5461 gctaatttaa aatataagta tggaaatcga aagttttggg ctagaggcta ctatgtgagt
     5521 atcgttggac tgaacgaaaa gacggtagcg aaatgtattc gcgagcagga gaaaaatgac
     5581 atcgcacttg ataagttaag tgttaaagaa tatgaagatt cattttcaga tagtagtttt
     5641 agaacaagat aaaagcccgt tgttacgggc tttagtcaag taattatagc actaacctga
     5701 acgaagttca gcgaacgtct ttagacgtcg ctggagagaa acggcttata gccggtgtac
     5761 aagccacccg ttttcacggg tggttatgat tttatcctaa caattgctgc aaccattggc
     5821 tgccatagat ccaaaagaag ctataggcca caactgagaa agggcgacaa agtaaagtaa
     5881 tcataataaa tttccgatag ctcatgcttg ttaatccagt aatcatcacc actatgtcag
     5941 ctggagaaat gggagaaagc atgcaaagaa taaagaaaat ttcataacta cgtttattat
     6001 caattttgct ttcatatttg taaaacgtat cttcagacat gaagaggaga caaaatttct
     6061 ttccatagcg atgagccaac cagaaaagga tgatactacc gattgaaatt ccaagataat
     6121 tgagaaagaa tccccaccaa aaatgaaata cgaggaaacc cacaacagtc gtaacaccgc
     6181 ctggaataat cggaaataca acttgaataa tctgaatagc taaaaaggag aggctaccta
     6241 aagcaccttg gcttttgatt aaatcgctta agacattttg gtcgttcaaa atgccaatct
     6301 tatagagcca aaacagaaaa atagcagtcc cgataagggt caaaatactt aatacttgaa
     6361 tggttttttg ccaaaatt
//
LOCUS       DASGBY010000109         6266 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.109, whole genome shotgun sequence.
ACCESSION   DASGBY010000109 DASGBY010000000
VERSION     DASGBY010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6266
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.109"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..835
                     /locus_tag="U1396_001608"
     CDS             <1..835
                     /locus_tag="U1396_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019785287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II restriction endonuclease"
                     /protein_id="HEM5342782.1"
                     /translation="TNRTPDYYVNWSKVERETKKYELELNTLNYLIGKDDIYNEALQL
                     FNKQPNLLKAIPSLIASRDKTLDILSIDADDNMGFDNLDFAKIDEDRIVDYTNFVEAT
                     GLLDFLQKKANRSLVDYVYGVEAGLDSNARKNRSGTTMEGILERTVARVCKEYGLEFK
                     AQATAPFIKDNWGIEVPVDKSERRFDVAVFSKDKHKLWLIETNYYGGGGSKLKAVAGE
                     FTELSQFITKSTDDVNFVWVTDGQGWKTAHLPLAEAFGHITHVFNLDMLKQGYLHDLF
                     R"
     gene            956..2218
                     /gene="purD"
                     /locus_tag="U1396_001609"
     CDS             956..2218
                     /gene="purD"
                     /locus_tag="U1396_001609"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEM5342783.1"
                     /translation="MKLLVVGSGGREHAIAKKLLESEQVEQVFVAPGNDGMTLDGIEL
                     INIGISEHSALINFAKENDIAWTFVGPDDALAAGIVDDFEQAGLKAFGPSRLAAELEW
                     SKDFAKQIMVKYGIPTAAFGTFSNFEEAKAYIEEQGASIVVKADGLALGKGVVVAETV
                     EQAVEAAREMLLDNKFGDSGARVVIEEFLAGEEFSLFALVNGDQFYILPTAQDHKRAF
                     DGDQGPNTGGMGAYAPVPHLPQSVVDTAVDTIVKPILEGMITEGRSYLGVLYAGLILT
                     DQGPKVIEFNARFGDPETQIILPRLTSDFAQNIDDILHKRPTQLTWLNSGVTLGVVVA
                     SNGYPLDYEKGVTLPAKTEGDITTYYAGARFAENSRALLSNGGRVYMLVTTADTVQDA
                     QEKIYSELKNQDTTGLFYRTDIGSKAVK"
     gene            2244..2732
                     /gene="purE"
                     /locus_tag="U1396_001610"
     CDS             2244..2732
                     /gene="purE"
                     /locus_tag="U1396_001610"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEM5342784.1"
                     /translation="MNIPISIIMGSSSDWKTMKKAADVLDKFGVAYEKKVVSAHRTPD
                     LMFRHAEEARGRGIKVIIAGAGGAAHLPGMVAAKTTLPVIGVPVQSRALSGVDSLYSI
                     VQMPGGVPVATMAIGEAGATNAALTALRILSIEDSGIADQLASFAIEQGKIAEAMSDE
                     LN"
     gene            2719..3804
                     /gene="purK"
                     /locus_tag="U1396_001611"
     CDS             2719..3804
                     /gene="purK"
                     /locus_tag="U1396_001611"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEM5342785.1"
                     /translation="MNSTKTIGIIGGGQLGQMMAISAIYMGHKVITLDPAADCPASKV
                     SEVIVAPYHDVAALKQLAERCDVLTYEFENVDADGLDAVIKDGQLPQGTDLLRISQNC
                     IFEKDFLAKKAGVQVAPYKVVTSSLDLEGLDLSKNYVLKTATGGYDGHGQKVIREAAD
                     LEAASQLANSTECVLEEFVNFDLEISVLVSGNGSDYTVFPVQENIHRNNILYKTIVPA
                     RISDELAEKAKTMALQIADKLHLAGTLCVEMFVAGQEILVNEIAPRPHNSGHYSIEAC
                     DFSQFDTHIRGILGEPLPPIRLLSPAVMINVLGQDMEAVQTFLQENPTAHAHFYGKLE
                     AKHNRKMGHVTVLTEDVEVGFRQDEIR"
     gene            3791..4714
                     /locus_tag="U1396_001612"
     CDS             3791..4714
                     /locus_tag="U1396_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4268 domain-containing protein"
                     /protein_id="HEM5342786.1"
                     /translation="MKLDRLKEVDVREIWKHEQYDFSEWLSRTENIELLSDEIGLTLT
                     EIDKEVFVGSYRCDLVAIDETTGIKVIIENQLELTDHDHLGKIITYASGLDAEVVIWI
                     VKKAREEHRSAIEWLNNNTTKNISFFLIEIHAYQIGSSMPAPKFVLVEKPNDFTKLAK
                     GNNHGGDLSKAQAERLYFWTQFNNVVATKNKPFNVRKATTDHWYDVAIGTSEAHISIT
                     LVNKSKSVGIEIYINNNKELFDKLSSHADEIHEELGFEMEWKRLDNRKVSRIIYYIKG
                     LDFENHDNYNDLIDEVINKVIILRDVVKKYI"
     gene            4749..6041
                     /gene="purB"
                     /locus_tag="U1396_001613"
     CDS             4749..6041
                     /gene="purB"
                     /locus_tag="U1396_001613"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEM5342787.1"
                     /translation="MIERYTRPEMGNIWSEENKYKAWLEVEILADEAWAELGEIPKED
                     VALIREKATFDIDRILEIEEETRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTAY
                     GYLYKQANDIIRRDLENFTNIIADKAREHKYTIMMGRTHGVHAEPTTFGLKLATWYSE
                     MKRNMERFDVAAKGVEAGKISGAVGNFANIPPFVEEYVCGKLGIRPQEISTQVLPRDL
                     HAEYFSALALIATSIERMATEIRGLQKSEQREVEEYFAKGQKGSSAMPHKRNPIGSEN
                     MTGLARVVRGHLVTAFENVALWHERDISHSSAERIITPDTTILINYMLNRFGNIVKNL
                     TVFPENMKRNMESTFGLIYSQRVMLSLIEKGMTREEAYDLVQPKTAQSWDNQVDFKPL
                     LEADERVTAKLSQEEIDELFNPDYYAKRVDDIFERLGL"
BASE COUNT         1805 a         1275 c         1534 g         1652 t
ORIGIN      
        1 tactaatcga acgccagatt actatgtcaa ttggtctaag gttgaacgag aaacaaaaaa
       61 atatgagtta gaattaaata ctttgaatta tttaattggt aaagatgata tatataacga
      121 agcgttgcaa ctttttaata aacaaccaaa tttattaaaa gctataccaa gtttgattgc
      181 aagtcgtgat aaaacactgg atattttatc aattgatgcc gatgataata tgggttttga
      241 taacttagat tttgcaaaaa ttgatgagga tagaattgta gattatacta actttgtgga
      301 agcaacagga ttattagatt ttttgcaaaa gaaagccaat cgttctttag tggactacgt
      361 ttatggagta gaggcgggac ttgacagtaa tgcacgtaaa aacagaagtg gtactaccat
      421 ggaggggatt ttagagcgaa cagtagcacg tgtctgtaaa gaatatggat tggagtttaa
      481 ggcacaagca acagctccat ttataaagga taattggggg attgaggtcc ctgttgataa
      541 gtcggaacgc cgatttgatg ttgctgtatt ttcgaaagat aaacataaat tatggttaat
      601 tgaaacgaat tattacggtg gaggcggtag caagttaaag gctgtagctg gagaatttac
      661 agaattaagt caattcatca caaaatctac agatgatgtt aattttgtgt gggtaactga
      721 tggtcaggga tggaagactg cccatcttcc tttagcagaa gcatttggtc atataaccca
      781 tgtcttcaat cttgacatgc taaaacaagg ttacttgcat gatttgttta gataatcaag
      841 tttgctcacc tcgtgtgagc tttttccatt cccgaacatt ctcctgtttt ttctattaaa
      901 atccgtctgt ttttgctata ctgtttatag aaaatccgtt tttgaggtgt aagaaatgaa
      961 acttttggtt gtcgggtctg gtggtcgtga acacgctatt gcaaagaagt tgttagagtc
     1021 tgagcaggta gaacaggtct ttgttgctcc tggaaatgat ggaatgactt tagacggtat
     1081 tgaattgatc aatatcggta tttccgaaca ttctgccctc atcaactttg caaaggaaaa
     1141 tgatattgca tggacttttg ttggtccaga tgatgctctg gcagcaggta tcgttgatga
     1201 ttttgaacag gctgggttaa aggcatttgg tccgagtcgt cttgccgcgg agctagagtg
     1261 gtcaaaagac tttgctaagc aaatcatggt caaatacggc attccaacag cagcctttgg
     1321 cacattttcc aacttcgaag aagccaaagc ctacatcgaa gagcagggtg catcaatcgt
     1381 ggtcaaggcg gacggattgg cactgggcaa gggtgtggtc gtggcggaaa ccgtcgagca
     1441 ggcggtcgaa gcggcacggg agatgctctt ggacaacaag ttcggtgact caggtgcccg
     1501 cgtggtcatc gaggagttct tggcgggcga ggagttttcc ctctttgccc tggtcaacgg
     1561 cgaccagttt tatatcctgc cgacagccca ggaccacaag cgtgcctttg acggagacca
     1621 ggggcccaac actggcggta tgggggctta cgctcctgtt ccccacctgc ctcaaagcgt
     1681 agtggacaca gcggttgaca ctattgtcaa gcctattctt gagggcatga ttacggaagg
     1741 gcggtcttat ctgggcgtgc tctatgctgg cttgattttg accgaccaag gtcccaaggt
     1801 catcgagttt aacgcccgtt ttggcgaccc agaaacccag attattctgc ctcgtctgac
     1861 ctctgacttt gctcagaaca tcgacgacat cctccacaaa cgtccgacac agctgacctg
     1921 gctgaatagc ggcgtgacgc tgggtgttgt cgtggcctca aatggctatc ctttggatta
     1981 cgaaaaaggc gtgaccttgc cagcgaagac cgagggtgac atcacgacct attatgcagg
     2041 ggctcgtttt gcggaaaata gcagagcact gctttcaaac ggcggtcgag tttacatgct
     2101 agtcaccaca gcagacaccg tccaagacgc ccaggaaaaa atttactcgg agctgaaaaa
     2161 tcaggatact acaggcctct tttatcgaac agatattgga agcaaggccg ttaaataagg
     2221 aacaaagaaa aggaaagaca agtatgaata ttccaatttc catcatcatg ggctctagtt
     2281 ccgactggaa aaccatgaaa aaagcagccg atgtgctgga caaatttggc gtagcctatg
     2341 aaaagaaagt ggtctctgcc caccgcaccc cagacctcat gttccgtcat gccgaagagg
     2401 cgcgtggtcg tggtattaag gttattatcg cgggagcggg tggtgcggct catttgccag
     2461 gtatggtagc agccaagacc accctgcctg ttatcggtgt tcctgtccaa tcccgtgccc
     2521 tcagcggtgt ggattcgctc tattctatcg tgcaaatgcc aggcggcgta cctgtggcaa
     2581 cgatggcaat tggagaagcg ggagcaacca atgcggcttt gactgccctg cgtatcctgt
     2641 ccatcgaaga tagcggtata gcagatcaac tggccagctt tgctattgaa caaggaaaaa
     2701 tcgcggaggc tatgagcgat gaactcaact aaaacaatcg ggattattgg tggcggtcaa
     2761 ctgggtcaga tgatggccat ttctgctatt tacatggggc acaaggtcat cacgctggat
     2821 ccagcagcgg actgcccagc ttccaaggtt agcgaggtta tcgtcgctcc ctatcacgat
     2881 gtggcggccc tcaaacagct ggcggagcgg tgcgatgtcc tgacctacga gtttgaaaat
     2941 gtcgatgccg acggactgga cgcggtcatc aaggacggcc agctccctca ggggacagac
     3001 ctcctccgta tttcccaaaa ctgcattttt gagaaggatt ttttggcaaa aaaagctggc
     3061 gtgcaagtcg ccccctacaa agtcgtcaca tctagcctag acctagaagg tctggacctc
     3121 agcaaaaact acgttttgaa gacagctact gggggctatg atggacatgg tcagaaggtc
     3181 attcgagaag ccgcggactt ggaggcggct agtcagttag ccaactctac cgagtgtgtt
     3241 ttggaagagt ttgtgaattt cgacctggaa atctccgtcc ttgtgtctgg caatggctcc
     3301 gactacaccg tctttcctgt gcaggaaaat atccaccgca ataatattct ttacaagacc
     3361 attgtgcctg ctcgtatttc tgatgaactt gctgaaaaag ccaaaactat ggccctgcaa
     3421 atcgcagaca aactccattt ggcaggcacc ctctgtgttg agatgtttgt ggcagggcaa
     3481 gaaattcttg tgaatgaaat cgctcctcgc ccgcacaatt caggacatta ttcgattgaa
     3541 gcctgtgatt tttcacagtt tgacacccat atccgaggca ttttagggga gcccctgccc
     3601 cctatccgcc tgctttctcc agctgttatg atcaatgtcc tcggacaaga catggaagca
     3661 gtccaaacct ttcttcaaga aaaccctacc gctcatgccc acttttatgg taaactagaa
     3721 gcaaagcaca atcgcaaaat gggacacgtg acggtgttga cggaagacgt tgaggtggga
     3781 tttagacaag atgaaattag ataggctaaa ggaagtagat gttagagaaa tctggaaaca
     3841 tgagcagtat gatttctcgg agtggctgtc taggacagag aatatcgaat tactgagcga
     3901 tgagatagga ctgactctta ccgagattga caaggaagtt ttcgttggct catatagatg
     3961 cgatttagtg gctattgatg aaacaacggg aataaaagtg attatagaaa accaattaga
     4021 attaacggat catgatcatc ttggtaaaat cataacctac gcatcgggct tagatgctga
     4081 ggttgtcatt tggattgtaa aaaaagctag agaagagcat aggagtgcta tcgagtggct
     4141 taacaataat acaacgaaaa atatatcttt tttcctaatt gaaatccatg cttatcaaat
     4201 aggtagttca atgcctgctc ctaaatttgt tcttgttgag aaaccgaatg attttacaaa
     4261 gctagctaaa ggaaataatc acggtggtga tttgagtaaa gcacaggcgg aacgtttgta
     4321 tttttggact caatttaata atgtagtggc aactaaaaat aaaccgttca acgttagaaa
     4381 agctactaca gaccactggt atgatgttgc tattggaaca agtgaggctc atatttctat
     4441 taccctagtc aataaatcaa aaagtgtagg gattgaaatc tatataaaca ataataagga
     4501 attatttgat aagctatcat cacatgctga tgaaatccac gaagaacttg gatttgaaat
     4561 ggaatggaag aggttagata atagaaaggt ttccaggatt atatattata taaagggtct
     4621 ggattttgag aaccatgaca attacaacga tttaattgac gaagtaatta acaaagttat
     4681 cattttgaga gatgtagtta aaaagtatat ctaaaaaaat aaatagatag ggaaaaagga
     4741 aacacaacat gatagaacgc tacacacgcc ctgaaatggg caatatttgg agtgaagaga
     4801 acaagtacaa ggcttggttg gaggtggaaa tcctcgctga tgaggcttgg gctgagttgg
     4861 gtgagattcc caaagaagat gtggccttga ttcgtgagaa ggcgactttt gacatcgacc
     4921 gcattttaga gattgaagag gaaacccgtc acgatgtggt ggcttttacg cgtgcggttt
     4981 cggaaagtct tggtgaggaa cgcaagtggg tccactacgg tctgacttcg accgacgtgg
     5041 tggatacggc ttacggctac ctctataagc aggccaacga catcatccgt cgtgaccttg
     5101 aaaactttac caacattatc gccgacaagg cgcgtgagca caagtacacc attatgatgg
     5161 gccggaccca cggtgtccat gcggagccaa cgacctttgg tctgaagctc gcaacttggt
     5221 acagcgaaat gaaacgcaac atggagcgtt ttgatgtggc ggccaagggt gttgaagctg
     5281 gtaaaatttc aggtgcggtt ggaaactttg ctaacattcc tccatttgtg gaagagtatg
     5341 tttgtggcaa attgggcatt cgtccgcagg aaatttctac ccaggtcctt cctcgtgacc
     5401 tccacgcaga atatttctca gccctagcct tgattgcaac atctatcgag cgtatggcga
     5461 cagaaatccg tgggctacaa aaatctgaac aacgcgaagt cgaagagtat ttcgccaaag
     5521 gccaaaaagg cagctctgct atgccccata aacgcaaccc tatcggctct gaaaatatga
     5581 ccggtctggc tcgtgtggtg cgtggtcact tggtgacggc ttttgagaat gtggctctct
     5641 ggcacgaacg cgatatttcc cactcgtcag cggagcggat tatcacgccg gatacgacta
     5701 tcctcatcaa ttatatgctc aaccgttttg gcaatatcgt taagaacttg acggtcttcc
     5761 ctgaaaatat gaaacgcaat atggagtcaa cctttggctt gatttacagc cagcgtgtca
     5821 tgctcagttt gattgaaaaa ggcatgaccc gtgaggaagc ctatgatttg gtgcaaccaa
     5881 aaactgcgca gtcatgggat aatcaagtgg acttcaagcc ccttctcgaa gcggatgagc
     5941 gtgtgactgc caaacttagc caggaagaaa tcgatgaact cttcaaccca gactactatg
     6001 ctaagcgggt tgatgacatc tttgaacgac ttggattata aaaaatcaaa attctttgga
     6061 ttttccagag aattttttta tttacttgcg aataagtagg tgaaggggaa aacaagctcc
     6121 ctccgctaga caatcattcg tgagtaaaaa taaaccattt tttacaaaag tttacgaata
     6181 gataagtgtg ggggaagcct gctcacaact tattcaaaac aagtatcgtc atttagtttt
     6241 tcttttatta cttcgttaac tcgcct
//
LOCUS       DASGBY010000110         6227 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.110, whole genome shotgun sequence.
ACCESSION   DASGBY010000110 DASGBY010000000
VERSION     DASGBY010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6227
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.110"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(25..714)
                     /locus_tag="U1396_001614"
     CDS             complement(25..714)
                     /locus_tag="U1396_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5342788.1"
                     /translation="MGKVIIGISGNEQEFPTKSGRTYVTVASELADGVRQAGGVPMVI
                     PMGTPDLAKDYINMIDKLILSGGQHVDPSLYGQERLIDSNDYLLERDAFELALIEEAL
                     RQGKPIFAVCRGMQLLNVALGGSLEQEVAHHWQEGIAGTSHRLQVKPKSRIGQLFTQG
                     SPINSFHQQRIKELAPGLVATGLDPRDGTIEAYESRGNQALFGIQWHSEFLYNDCKQH
                     RDLFQYLVDIF"
     gene            1094..3343
                     /gene="metE"
                     /locus_tag="U1396_001615"
     CDS             1094..3343
                     /gene="metE"
                     /locus_tag="U1396_001615"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM5342789.1"
                     /translation="MTTTIIGFPRIGEHRELKFITEKYFRNEIPQEELLEVAKDLRAK
                     HWNIVKEAGITEIPSNDFSHYDNVLDAAVLFNIVPKAVQNLDLTDLEKYFALARGYQG
                     EKGDVRARPMKKWFHTNYHYIVPAIEKDTEIKLAGHKIFDEFQEAKNLGITTRPVLIG
                     PFTLLQLTDFEEGLTATDFADSLVAAYGQVFEKLAELGAEKIQLDEPSLVKDLTAEEK
                     ALFLRIYQTLLADKKGLQVLIQTYFGDVRDIYTELTSLPVDAIGLDFVEGTETAALVA
                     TGFPANKTLYAGIVNGKNIWRNNYEKSLAVLDAIPAEHVVITTSCSLLHVPFTTANEE
                     FEPAILNHFAFAVEKLSELRDLDAIRNSQGEVALTANKELFALERVGRDAALADRLAG
                     LTDADYTRLPVFAEREAIQREKLNLPLLPTTTIGSFPQTKEVRSTRLAFRKGNISEEE
                     YDTFVKAQTDEWIAWQEEVDFDVLVHGEFERNDMVEYFGENLSGYLFSKNGWVQSYGM
                     RGVKPPIIWGDVTRLNPITVKWSSYAQSRTNKPVKGMLTGPVTILNWSFPREDISIKE
                     STLQIALAIKEEVLDLEAAGIKIIQIDEAALREKLPLRRSDWYSEYLDWAIPAFRLVH
                     STVAPETQIHTHMCYSEFTDIIPAIDNMDADVISFEASRSNLVILDELKAKNFQTQVG
                     PGVYDIHSPRVPAVDEIAHTIQAILAKVPKEKVWINPDCGLKTRGESETKASLIHLTQ
                     AAKTARKEL"
     gene            3347..4207
                     /gene="metF"
                     /locus_tag="U1396_001616"
     CDS             3347..4207
                     /gene="metF"
                     /locus_tag="U1396_001616"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEM5342790.1"
                     /translation="MIGQTPSLSFEIFPPKPEVGNEKIIQTLDEMQGLAPHFISVTCS
                     NNNLNVEETTVKLANHVRNELHIPTIAHLPAAYLTKEKVRSVLHSLDEIGVHQILALR
                     GDIIEGLPPKEDFQYATDLISFIKEEAPHFDIIGACYPEVHPESPNSVSDIKNLKKKV
                     DAGCSTLVTQLFFDNEAFYNFQEKCSLADIEVPIIAGIMPIINRNQALRLLKTCENIR
                     LPRKFKAILEKYEHNPESLRAAGLAYAVDQIVDLVTNDVAGIHLYTMNNAETARTIHQ
                     ATHSLFKHYS"
     gene            complement(4555..6015)
                     /locus_tag="U1396_001617"
     CDS             complement(4555..6015)
                     /locus_tag="U1396_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM5342791.1"
                     /translation="MDQFFKLKEHGTTVSTEIMAGLTTFFAMSYILFVNPSVLSVAGM
                     PTQAVFLATIIASAVSTLVMGLFANVPYALAPGMGLNAFFTYTVVIGLGFTWQEALAM
                     VFLCGLFNVFITVTKVRKGIIKAIPVSLQHAIGGGIGVFVAYLGFKNSNLITFLTSGS
                     DIITVNGVAPADATAETFSNGVFSVFAGGGVVPGISTFTDPSVLLTVFGLLLTAVLVI
                     KNVRGAILIGIIATTLAGIPAGVVDLSTIDFANNNIGTAFAELGTTFLAAFDGLSSLF
                     ADSSRLPLVLMTIFAFSLSDTFDTLGTFIGTGRKTGIFSEEDEKALENGTGFNSKMDK
                     ALFADAIGTSIGALFGTSNTTTYVESAAGISAGGRTGLTAVTTAVLFLLSILILPFIG
                     IVPNAATAPALIIVGVMMVSSFLDVDWSQFEDALPAFFAAFFMALCFSISYGIAAAFI
                     FYCLVKVSTGKAKEIHPILWGATALFILNFIILAIL"
BASE COUNT         2026 a         1381 c         1156 g         1664 t
ORIGIN      
        1 ataataaaaa gagggatacc cctcttaaaa tatatctact aaatactgaa acaggtctcg
       61 atgttgctta caatcattat acaaaaattc tgaatgccat tggataccaa acaaagcttg
      121 gttccctcta ctttcataag cttctatcgt accatctcta ggatccaaac ctgtcgccac
      181 cagtcctgga gccaattctt tgattcgttg ctgatggaag gaattaatag ggctcccttg
      241 ggtaaacagt tgaccgattc gacttttagg tttcacttgt aaacgatggg atgtccccgc
      301 aataccctct tgccaatgat gagccacttc ctgctctaaa ctaccaccta gagcaacatt
      361 gagcaactgc ataccacggc aaacggcaaa aataggtttt ccttgccgaa gggcctcttc
      421 aatcaaagct aactcaaatg catcccgttc caagaggtaa tcattactat caatcaagcg
      481 ctcttgcccg tatagactgg ggtctacatg ctgaccgcct gataaaatca acttatcaat
      541 catgttgata tagtccttgg ctaagtcagg agttcccata ggaataacca ttggtacacc
      601 acctgcctga cgcacaccat ctgccaattc actcgcaacg gttacataag ttctaccaga
      661 tttagttgga aattcttgct cgtttcctga aattccaatg ataacttttc ccataaaaag
      721 cccctttctt tcattttttc aattgtagca tggctaccta gccctgtcta atatagaagt
      781 tttatggctt gataaaaaat aactatcaga actacctata aacaattgct cataaacaag
      841 agtttgcctt tagcagtttc atagataaaa tctataccac gcttaagaaa aaactatact
      901 ggagccagca taaaaaagtc aagcttgata aacaggcttt tttcaagctt ttatatagaa
      961 gaaatatcaa aaaagtagct ctctttcaat ctgttatagt caaaagttat aactccctct
     1021 aattttttac aattatacaa gagtcgtttt ttctgttagg ataggggcat agaaatattt
     1081 tggaggaaaa aacatgacta ctactattat cggcttccca cgtatcggag aacaccgtga
     1141 gttaaaattt atcactgaaa aatactttag aaatgaaatt ccacaagaag agcttttgga
     1201 agtagctaaa gacctacgtg ctaagcactg gaatattgtt aaagaagcag gcattactga
     1261 aatcccaagc aacgacttct cccactatga caatgttttg gatgcagctg ttctcttcaa
     1321 catcgtacct aaagcagtac agaaccttga cttgactgac cttgaaaaat acttcgctct
     1381 tgcacgtggt tatcaaggag aaaaagggga cgttcgtgct agaccgatga aaaaatggtt
     1441 ccacaccaac taccactata tcgttccagc tattgaaaaa gatacagaaa tcaaactagc
     1501 cggtcataag attttcgatg aattccaaga agcaaagaac ttgggcatca caactcgtcc
     1561 agttttgatt ggtccattca cactcttaca attaactgat tttgaagaag gtttaactgc
     1621 tactgatttc gctgatagct tagttgcagc ctacggacaa gtctttgaga aattggcaga
     1681 gcttggtgct gaaaaaatcc agctggacga accgagcttg gtcaaggatt tgactgctga
     1741 agaaaaagcc cttttcctac gtatctacca aacactcttg gcagataaga aaggtttgca
     1801 agttctcatc caaacctact tcggtgatgt tcgtgatatt tacacagaat tgaccagcct
     1861 accagttgat gccatcggtc ttgactttgt agaaggtacg gaaactgctg cacttgttgc
     1921 aactggtttc ccagctaaca agaccctcta cgctggtatc gtcaacggta aaaatatctg
     1981 gcgcaacaac tacgaaaaga gcctggctgt tttggatgct attccagctg aacatgtcgt
     2041 tataacaact tcttgctccc ttcttcatgt acctttcaca acagcaaatg aagaatttga
     2101 accagctatc ctcaaccact ttgcttttgc agttgaaaaa ctgagcgaat tgcgtgattt
     2161 ggatgccatc cgtaacagtc aaggcgaagt tgctctcaca gctaacaagg aactctttgc
     2221 ccttgagcgt gttggtcgtg atgcagccct tgcagaccgt cttgcaggac tgacagacgc
     2281 cgattataca cgcctaccag tctttgcaga gcgtgaagcc attcaacgcg agaagctaaa
     2341 cttaccactt cttccaacaa ccactatcgg ttccttccct cagaccaagg aagtccgtag
     2401 cacacgcttg gctttccgca aaggaaatat ctcagaagaa gaatacgata catttgttaa
     2461 agctcaaaca gacgaatgga ttgcatggca ggaagaagtt gacttcgatg tcttggttca
     2521 tggtgagttt gaacgaaacg acatggtaga atacttcggt gaaaaccttt ctggttatct
     2581 cttcagtaag aacggatggg tccaatcata tggtatgcgt ggggtaaaac caccaatcat
     2641 ctggggggat gtgacgcgct tgaacccaat cactgttaaa tggtcaagct atgcacaaag
     2701 ccgtacaaac aaaccagtta aaggtatgtt gacagggcca gtaaccattc tcaactggtc
     2761 attccctcgt gaagatattt ctattaaaga atcaactctt caaatcgccc ttgctatcaa
     2821 ggaagaagtt cttgaccttg aagcagcggg tatcaagatt atccaaattg acgaagcagc
     2881 tttacgtgaa aaattaccac ttcgtcgtag cgactggtac agtgaatatt tggattgggc
     2941 gattccagcc ttccgattag ttcactcaac tgttgcacca gagacacaaa ttcacactca
     3001 catgtgctat agcgaattta ctgacatcat tcctgccatc gacaatatgg atgcagacgt
     3061 tatctccttt gaagccagcc gttcaaatct tgttattcta gatgaactca aggctaaaaa
     3121 cttccaaact caggtaggtc ctggtgtcta tgacatccac tctccacgtg tccctgccgt
     3181 tgatgaaatt gcacacacca ttcaagccat ccttgctaaa gtaccgaaag aaaaagtttg
     3241 gattaaccca gactgcggac tcaagactcg tggcgaatca gaaacaaaag ctagtcttat
     3301 ccacttgact caagcagcta agacagccag aaaggaactc taatttatga ttggtcaaac
     3361 cccaagtctc tcatttgaaa tttttcctcc aaaaccagaa gtaggcaatg aaaagattat
     3421 ccaaactctc gatgagatgc aaggtttggc ccctcatttt atcagtgtta catgcagcaa
     3481 taacaatttg aacgtagaag agactactgt caagttggct aaccatgttc gcaatgaatt
     3541 gcatattcca actatcgcac atttgccagc tgcttacttg acaaaagaaa aggtccgatc
     3601 cgttcttcat tctctcgatg aaattggtgt acatcagatt ttagcacttc gtggcgatat
     3661 tattgaaggt cttcccccta aagaggactt ccagtatgca actgacttga tttcctttat
     3721 caaggaagaa gccccacatt ttgacattat tggagcctgt tatccagaag tacatccaga
     3781 atcaccaaat tctgtctcag acatcaaaaa tttgaaaaag aaagttgatg ccggttgctc
     3841 aaccttggta actcaactct tcttcgataa cgaagcattt tataactttc aggagaaatg
     3901 ttctctagca gacatcgaag tgcctattat cgcaggtatt atgcctatca tcaacaggaa
     3961 tcaggcactt cgtctcttga aaacctgcga gaacattcgc ttaccacgta aatttaaagc
     4021 tatcctggaa aaatatgagc acaatcctga gtcacttcgt gcagcaggtc tggcctatgc
     4081 tgtagatcaa attgttgact tagtgaccaa tgatgtggct ggtatccatc tctacactat
     4141 gaacaatgcc gaaacggccc gcaccatcca tcaagcaact cattcgttat tcaaacatta
     4201 tagttagaaa actccccctg aacccaagct caggggttat tctataccct gtgactccca
     4261 aagactacat gataattttt tcaccccatc atgacattaa tccagcggat gtctaggtat
     4321 gagacatctt gcttacaata acgaacagcc atttaaaata cagtcacaag gagtaaaaat
     4381 ggcactaaga ggagacagag aagcaacgaa atggaaaaat aaactccatc cgttttcaaa
     4441 ttacaacgtt caataccgca tatgctgaat aaatcacatt gattcccata tattttaatc
     4501 ataaataaaa aaactgacct tcaaatgaag atcagttcaa ggataataaa cagattacaa
     4561 gatggctaga atgatgaaat tcagaataaa tagagctgtg gcaccccaaa ggattggatg
     4621 aatttcttta gccttaccag ttgaaacttt tactaagcaa tagaagataa atgcggctgc
     4681 aataccgtat gagatagaga agcaaagcgc catgaagaag gcggcaaaga aggctggaag
     4741 agcgtcttca aactggctcc aatcaacatc aagaaaggat gaaaccatca tgacaccgac
     4801 gataatcaag gctggagctg ttgcagcatt tggcacaatt ccaatgaatg gtaaaatcaa
     4861 aattgatagc aagaagagaa cggcagttgt aacagctgtc agaccagtac gaccacctgc
     4921 agagatacct gcagccgatt caacatatgt cgttgtattt gaagtaccaa atagtgcacc
     4981 gatagaggta ccaatcgcat ctgcaaagag cgccttgtcc atcttagagt taaagcctgt
     5041 accattttcg agagctttct catcttcttc tgagaaaata ccagtcttac gacctgtacc
     5101 gataaaggta ccaagtgtgt caaaggtatc tgacaagctg aatgcaaaga tagtcatcaa
     5161 aacaagtggt agacggcttg agtcagcaaa gagcgaagat agaccatcaa aagccgctaa
     5221 gaaagttgta ccaagctccg caaaggctgt accgatattg ttattcgcaa aatcgattgt
     5281 agacaggtcc acaacacctg ctggaattcc agctaaagtc gttgcaataa taccaatcaa
     5341 aattgctcca cgcacgttct taataaccag aacagctgtc aaaagaagac cgaacactgt
     5401 caagagaaca cttggatcag taaaggttga aataccaggt acgacaccgc caccagcaaa
     5461 aacagagaaa acaccgtttg agaatgtttc ggctgttgca tctgccggag caacaccatt
     5521 tacagtaata atatctgaac cagatgtcaa gaaggtgatt aaattagagt ttttaaaacc
     5581 aagataggca acgaatacac cgataccacc accgatggca tgttgtaaac taactggaat
     5641 cgccttgata atacccttac gaacctttgt aactgtgata aaaacgttaa acaaaccgca
     5701 gaggaaaacc attgccaaag cttcttgcca agtaaaacca agaccaataa ccactgtata
     5761 ggtaaagaag gcattcaacc ccatacctgg tgccaaggcg taaggtacgt tagcaaataa
     5821 tcccataaca agcgttgaaa ctgcactggc aattattgta gccaagaaaa cagcctgtgt
     5881 tggcattcca gcaacactta acacactagg gttaacaaac aagatatatg acatggcaaa
     5941 gaaagtcgta agtcctgcca taatttccgt agaaacagtc gttccatgtt ctttcaattt
     6001 aaaaaattga tccatttttt tcatttctcc ttttaattta cgaacaataa aaacattata
     6061 atcaaaaaac attataattt caagtttttt aatcttgaaa gcgttatttt attgattttc
     6121 aactttaaac attcgcaaat cccgaacgtt gcagacttac aaaaatctat acaaaattta
     6181 tcgcttcttt gcttttatta tctccttttg ttatactgga agttatt
//
LOCUS       DASGBY010000111         6159 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.111, whole genome shotgun sequence.
ACCESSION   DASGBY010000111 DASGBY010000000
VERSION     DASGBY010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6159
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.111"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            24..2048
                     /locus_tag="U1396_001618"
     CDS             24..2048
                     /locus_tag="U1396_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HEM5342792.1"
                     /translation="MKKNIRLKSSILALVAGFSVIATQAVLADELAVQIMGVNDFHGA
                     LDMTGTARLEGETVRNAGTAALLDAYMDDSQAEFEETAAETEKPAESIRVQAGDMVGA
                     SPSNSGLLQDEPTVKVFNKMDVEYGTLGNHEFDEGLDEYNRIMTGEAPKKGQFNEIVD
                     NYTREAAKQEIVIANVIDKETGEIPYGWKPYAIKTIPVNDKEAKIGFIGVVTTEIPNL
                     VLKKNYEQYTFLNEAETIAKYARELAEKGVNAIVVLAHVPATSKDGVAAGEAADMIAK
                     LNEIYPEHSVDLVFAGHNHVYTNGTTGKTLIVQATSQGKAYADVRAVYDTDIADFKAV
                     PTAKIIAVAPGQKTPSPEIQAIVDEANTIVKKVTEQKIATASQATDISREVNEFKESA
                     VGNLVTSAQLAIARKSGYDVDFAMTNDGGIRADLKVQEDGTVTWGAAQAVQPFGNILQ
                     VVQMTGEQIYTALNQQYDEGEKYFLQMSGIKYIYTKADNPTEENPYKVVKAFKEDGTE
                     IVPTETYTLVINDFLFGGGDGFSIFKEAKLIGAINPDTEVFVEYLTDLEKAGQTISAT
                     IPGRKAFVEKYVEEPKAEEKEDNAGTTTDVKTPEKANDGGDSVTNQKATEQPAPSGGM
                     APISNKKTEKASGNQTLPNTGQEALGSLLISLGGLVSLGMAVSVRRKEGE"
     gene            2246..2317
                     /locus_tag="U1396_001619"
     tRNA            2246..2317
                     /locus_tag="U1396_001619"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2279..2281,aa:Arg,seq:cct)
     gene            complement(2361..3449)
                     /locus_tag="U1396_001620"
     CDS             complement(2361..3449)
                     /locus_tag="U1396_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5342793.1"
                     /translation="MAYFRKRDNGWEYRISYKASDGSYKQKSKSGFRTKSEAVQAASQ
                     AEIELSNGIVEDKDITLAEYFEKWMLVHKKPHVGPETFGKYEYTLKLITRYFHETKLS
                     KINATSYQNIINELAKCYVKDSVKRFNSHIRAAIKVALHQGILKKDFTEIVKIFSDVE
                     SKKEEDKYLELDEYEQLITDYRKTIKYQSHFFLYTIGKTGLRFSEAAGITEPIIDREN
                     MCLRIRRTYKVYGKKKGWGPTKNPQSERDVPFDSEWLKAYDEYMKVGYIDNPDKRLFT
                     KLTGTGENKILKKKTRQTFNVHGLRHTYVSWLIYHDVDVVTIAKLVGHKDATETLKTY
                     SHLFKAKQEESFDKVRSLMEKFGANLGQ"
     gene            complement(4094..4930)
                     /locus_tag="U1396_001621"
     CDS             complement(4094..4930)
                     /locus_tag="U1396_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009014217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEM5342794.1"
                     /translation="MASGRTNDEIALYVAQTITELEEYLHHLTKNGDPDDARADKISQ
                     WVESWTKYLKQEKKFNPRSIPAFKRGSIVYVDLGFNVGTEYGGIHYAIVLNKKDSRNN
                     TLLHILPLTSIKETTDVDNLKYYQLSLSNEIHRLLIQKAQNNIKLIAEKKIIFEEKQE
                     KIDQKIAELKSILKDQVVSEDLNPRFEEYFENELSIVTSEQQEIDKIVRDMTAQSEYL
                     EKLINKIKNLKMGSIALLNQVTTISKLRLLDPINKKSLLTDITLSAETLDIIDDALKN
                     IL"
     gene            complement(4999..5754)
                     /locus_tag="U1396_001622"
     CDS             complement(4999..5754)
                     /locus_tag="U1396_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000862004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5342795.1"
                     /translation="MPIENKDIFSKNLKYYMDKKGVDRNQLCSDLDLKYTTVRDWIKG
                     ITYPRIGKIELLANYFGINKSDLIEEKSTIPSTTPKTVSDDVLRLDRDLHSNNHKSWI
                     RYGNALLDKQNTVTDSKNTVNELQATYHTYNYYDQPASAGTGQYLNDVKVETIELPIE
                     VDADFVVPIYGDSMEPEYHSGDYVFVKLSVDLSDGDIGVFAYNGEAYIKQLRITDQGA
                     YLHSLNPDYDNIPITADTDFRTIGEVVEVYRER"
     gene            5939..6085
                     /locus_tag="U1396_001623"
     CDS             5939..6085
                     /locus_tag="U1396_001623"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342796.1"
                     /translation="MSETILVGVILVILSAQTGFIIAGICWLKLEFEEKLKSRNNKSD
                     KSND"
BASE COUNT         1804 a         1095 c         1267 g         1993 t
ORIGIN      
        1 atagaaggag cattgttttg cttatgaaaa agaatattcg gttgaaaagc agtatactag
       61 ctcttgtagc tggttttagt gttattgcaa cacaagctgt tttggcagat gaattagctg
      121 tccaaattat gggagttaat gatttccatg gtgcgcttga tatgacgggg acagcgcgat
      181 tggaagggga aacagttcgt aatgcaggaa ctgccgcttt acttgatgct tacatggatg
      241 attcacaagc agaatttgaa gaaacagcag cagaaacaga gaaacctgca gagtctatcc
      301 gtgttcaagc tggggatatg gttggtgcaa gtccatcgaa ttctggactt ttgcaagatg
      361 aaccaactgt aaaagtcttt aataaaatgg atgttgaata cgggactttg gggaaccatg
      421 agtttgatga gggacttgat gagtataacc gtatcatgac tggtgaagct ccaaaaaaag
      481 gtcagtttaa tgagattgta gataattata ctcgtgaagc tgctaaacag gagattgtta
      541 ttgctaacgt tattgacaaa gaaacgggtg aaattccgta tggttggaag ccctacgcta
      601 ttaagactat tcccgtgaat gataaggaag ctaagattgg ctttattggt gtagttacga
      661 cagaaattcc taatcttgtt ttgaagaaaa actatgagca gtacactttt ttgaatgagg
      721 cagagacgat tgctaaatat gcgcgtgagt tagctgaaaa aggtgtaaat gcgatagttg
      781 tactggctca cgttccagct acaagcaagg atggtgtggc tgctggtgaa gcagcagata
      841 tgattgctaa gctaaatgaa atctatcctg aacactcagt tgaccttgta tttgctggtc
      901 ataaccatgt ctatacaaac ggtacaacgg gcaaaacctt gattgttcaa gctacctcac
      961 aaggtaaggc ttacgcagat gttagggctg tttatgatac agatattgcc gactttaaag
     1021 ctgttccgac tgcgaaaatt attgcagtag caccagggca gaaaacacca agtccggaaa
     1081 ttcaggcaat tgtagatgag gcaaatacca ttgttaaaaa agtaacagag caaaaaattg
     1141 ctacagctag tcaagcgaca gatatttcac gcgaagtgaa tgaatttaaa gaaagtgctg
     1201 taggtaatct agtaacatcg gctcaattag ctatcgctag gaaatcgggt tatgatgttg
     1261 actttgcaat gacaaacgat ggcgggattc gggcagattt gaaggtccaa gaagatggaa
     1321 cagttacttg gggagcagca caggctgttc aaccatttgg gaatatccta caagtcgttc
     1381 aaatgaccgg tgagcagatt tatacagcct taaatcaaca atatgatgaa ggtgaaaaat
     1441 atttccttca aatgtctgga attaaatata tctacacgaa ggctgacaat ccaacggaag
     1501 aaaatcctta taaggttgtt aaagccttca aagaagatgg gacggagatt gttccgacag
     1561 aaacctatac acttgtcatc aacgacttct tatttggtgg tggggatggc ttctcgattt
     1621 tcaaagaagc taaactgatt ggtgctatca atccagatac agaagtattt gtggagtact
     1681 tgactgattt agaaaaagca ggtcaaacca ttagtgcaac aattccaggt agaaaagcat
     1741 ttgtagagaa gtacgtagaa gaaccaaaag cagaagaaaa agaagataat gctgggacaa
     1801 ctactgatgt gaaaacacct gagaaagcaa atgacggtgg cgatagtgta acaaatcaga
     1861 aagcaaccga gcaaccggca ccatctggag gtatggctcc tatttcaaat aagaaaactg
     1921 aaaaagcatc aggaaatcaa acacttccaa ataccggtca agaagcccta ggctcacttc
     1981 ttattagctt gggtggctta gtttcactcg gaatggctgt ctcagtgaga cgtaaggaag
     2041 gggagtagga atcaagcata aaaacgacaa actttcgaag tacattctag aattacttct
     2101 tttagagact atcatgagag aaatgcataa aaataataag tatttcatct tagagtaagt
     2161 tctgcttttt tgtaaaaatt tgaaaaaact tacataacct tgctcttgca atctgctctc
     2221 ttctggggta caatagagaa gcagacttcc cttagttaaa tggatataac aaattcctcc
     2281 taagaattag ttgcaggttc gattcctgca ggggagatga aaacacaaca aaaacccttg
     2341 atacacaagg gtttttaatt ttattgtccc aaattcgccc caaatttttc cattaaactt
     2401 ctgactttgt cgaatgattc ttcttgttta gccttgaata agtgcgaata tgttttcaat
     2461 gtttcagttg cgtccttgtg ccctactaac ttggcaatgg tcacaacgtc cacgtcatga
     2521 tagatcagcc agctaacgta ggtatgacgt aagccgtgta cattaaatgt ttgacgtgtc
     2581 tttttcttta aaattttatt ttcgccagtc cccgtcaatt ttgtaaataa tcttttatct
     2641 ggattgtcta tatatccaac tttcatgtac tcgtcgtatg ctttcagcca ctcactatca
     2701 aatggcacat ctcgttctga ttgcgggttc ttagtaggtc cccaaccttt cttctttcca
     2761 taaaccttgt aagtcctgcg gattcgtaaa cacatatttt cgcggtcaat gattggttct
     2821 gtaatgcctg ctgcttccga gaaacgaagc ccagtctttc cgatagtgta caggaagaag
     2881 tgggactggt acttgattgt ctttcgataa tctgtgatta attgttcata ttcatcaagt
     2941 tccaggtact tatcctcctc tttcttggat tcgacatcgg agaaaatctt gacaatttcg
     3001 gtaaaatctt tttttaaaat tccttggtgg agagcgactt taatcgctgc ccttatatgc
     3061 gaattgaacc ttttgacact atctttcaca taacattttg ccaattcgtt tataatgttt
     3121 tgatatgaag tagcgtttat ttttgaaagt ttcgtttcgt ggaaatatct agtaattagc
     3181 ttaagggtgt attcatactt gccaaacgtt tctggtccga catgaggctt cttatggaca
     3241 agcatccatt tctcaaagta ctcagcaagg gtgatatcct tatcttcgac aatgccatta
     3301 gacagttcaa tttcagcttg ggatgctgct tgaacagctt cagacttagt cctaaaccca
     3361 gacttggatt tctgcttgta tgagccgtct gaggccttat atgagatacg gtattcccat
     3421 ccgttatccc tttttctaaa atacgccatt gatttaccct ttcttttttg ataaaatggg
     3481 tatagtaaag aggcctactg caaagcaggt ttttactata cgagataccc tacactcaag
     3541 gtttggcgac ggagagtgtg gggatttttt atttaagttt acacttaaaa cgtaattttg
     3601 gagcgatgtt tctattttcg ttccttatga aaatttaagc ctctgccttt taatatggtt
     3661 atttgttcat ctaagtcctt gaatggtttc ataatcgcta taactctcct agaaacaaca
     3721 aaacgacatc cgatattatc agatgtcgtt tcctatgcgt ccatacactc gcaagagtat
     3781 gggcttaact ctttctgata tattatcatt agtgtcaata tttgtcaact gtttttgttt
     3841 aatttctgat acttttttag attatattta cctctcccta taaatatcca ccacttgtcc
     3901 gattgttcgc atgtttcgta agttggaagt gtgggggttt ttgtttgttt ttttgaggga
     3961 gaattcatag aaaaaacctc tgctcgatga acagaggttt caaattgtcc tcaagggacg
     4021 agatcattta ttttgtcgtc tagcgacctt atgattcaat tgtaaccttt gttcttattt
     4081 ttgtcaacag atattataaa atatttttga gtgcatcgtc gattatgtcg agagtttcgg
     4141 cagacaaggt tatatctgtc agcaaagatt tcttgttaat tgggtccaac agtcttaatt
     4201 tgctgattgt tgttacttgg ttcaaaagag caatacttcc catttttaaa tttttgattt
     4261 tgttaatcaa tttttcaaga tattctgatt gtgcagtcat atctctgacg attttatcta
     4321 tctcttgttg ctcagaagtc acaatggata gttcgttctc gaagtattct tcaaatcttg
     4381 ggtttaaatc ctctgaaact acctgatctt ttaatattga cttgagttcg gcgattttct
     4441 gatctatttt ttcttgcttt tcttcaaaaa taatcttttt ttcagcgatt aacttgatat
     4501 tattctgtgc tttctgaata agcaatcgat ggatttcatt agataatgat aattggtagt
     4561 atttaagatt gtctacatct gttgtttctt ttattgaagt aagcggaaga atatgtaaga
     4621 gggtgttatt tcgtgaatct ttcttgttta acacaatggc gtagtgaatg ccgccgtatt
     4681 cggtgccaac attgaaacct aaatctacgt aaacaatgct accacgttta aaagcaggga
     4741 tacttctagg attgaatttc ttttcctgtt tcaaatattt tgtccaagac tcaacccatt
     4801 gactgatttt gtctgctcga gcatcatccg gatcaccatt cttagtcaaa tgatgaagat
     4861 actcctctaa ttctgtaatc gtttgtgcga cataaagcgc aatttcgtca tttgttctgc
     4921 cgctagccat ctgtttctcc tttcaattaa ctaaattaaa atattcttcc ttaaccatag
     4981 tttcattgac tgtggttttt acctctccct atacacctcc accacttcac caatggttcg
     5041 gaagtcggtg tctgctgtga tgggtatgtt gtcatagtct gggttgaggc tgtgaagata
     5101 ggcgccttgg tctgtgatgc ggagttgttt gatataggct tctccattgt aggcaaatac
     5161 tccgatgtcg ccgtcagata ggtctacaga tagtttgacg aatacataat cgcctgagtg
     5221 gtattctggt tccatggagt ctccgtagat ggggacaacg aagtcagcgt ccacttcaat
     5281 aggcaattcg atagtctcaa cctttacatc attcagatat tgacctgtgc cagcggaagc
     5341 gggttggtcg tagtagttgt aggtgtggta ggtggcttgc agctcgttta ctgtattctt
     5401 actgtctgtt actgtatttt gtttatctag aagcgcattt ccgtaccgta tccagctttt
     5461 gtggttgttt gaatgtaaat ccctatccaa tctcaaaacg tcgtcagaaa cggttttagg
     5521 ggtggtagaa gggattgtgg atttttcttc aatcaaatct gatttgttaa ttccaaaata
     5581 atttgcaagt aattcgattt tcccaattcg tgggtatgta atacctttta tccagtctcg
     5641 tacagttgta tactttaaat ctaaatcaga acagagttgg tttctatcaa cccctttttt
     5701 gtccatatag tattttagat ttttcgagaa aatatctttg ttttctatcg gcatagcatt
     5761 tttcctcgct ttctaatgaa gattttacgg caaaaacgca aaaaaatcaa gaaaaaacaa
     5821 aaaaattgcg aaaaaaaacg caaaaagttc ttgacattgc ggtttaaccg cagtataatt
     5881 taatcaaggt cagggaaatg accgaataaa aagcccgtga gggcggaaag gaggaaggat
     5941 gtcagaaaca attctcgtcg gcgtcatttt ggttatatta tcagctcaga ccggtttcat
     6001 catcgccggg atatgttggc ttaaattgga atttgaagaa aaacttaaaa gccggaataa
     6061 caagagcgat aaaagcaatg attgaagtga gaaatgtaaa aactaattca ttcgcggtga
     6121 gcgaaagtgt tatcgaggtt gttattgaaa gatagatca
//
LOCUS       DASGBY010000112         6082 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.112, whole genome shotgun sequence.
ACCESSION   DASGBY010000112 DASGBY010000000
VERSION     DASGBY010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6082
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.112"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(17..568)
                     /locus_tag="U1396_001624"
     CDS             complement(17..568)
                     /locus_tag="U1396_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002268947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM5342797.1"
                     /translation="MTKALISIDYTIDFVADEGKLTAGKSAQAISERIAQVTQEAFEN
                     GDYIFFAIDGHEEGDEFHPEAQLFPSHNIIGTQGRDLYGPLADFYQKHKGHARVRWMD
                     KRHYSAFSGTDLDVRLRERGVDTVVLTGVLSDICVLHTAIDAYNKGYRIEVVSSAIAA
                     LTEENHQFALNHLRHVLGATIID"
     gene            complement(570..1358)
                     /gene="codY"
                     /locus_tag="U1396_001625"
     CDS             complement(570..1358)
                     /gene="codY"
                     /locus_tag="U1396_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HEM5342798.1"
                     /translation="MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSC
                     IINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYVKAVAQVYDTQVNLPVESELTAI
                     PVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
                     FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITR
                     SVIVNALRKLESAGIIESRSLGMKGTYLKVLIPAIFDEIKKRDY"
     gene            complement(1829..3043)
                     /locus_tag="U1396_001626"
     CDS             complement(1829..3043)
                     /locus_tag="U1396_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5342799.1"
                     /translation="MKQFNKSTKLDDVAYDIRGPVLEEAMRMRANGEQILRLNTGNPA
                     EFGFTAPDEVIRDLIHNARKSEGYSNSKGIFSARKAIMQYCQLKKFPNVDIEDIYLGN
                     GVSELIVMSMQGLLDNGDEVLVPMPDYPLWTAAVSLAGGKAVHYVCDEAAEWYPDLAD
                     MESKVTSRTKAIVLINPNNPTGALYPKEILKGIIDIARRHELIIFSDEIYDRMVFDGA
                     VHIPIATLAPDLFVVTMNGLSKSHRICGFRVGWMVLSGPKKHVKGYIEGLNMLSNMRL
                     CSNVLAQQVVQTSLGGYQSVDELLMPGGRLYEQREFITKAINDIPGLSAVKPKAGLYV
                     FPKIDREMYRVEDDEQFVLDFLKQEKVLLVHGRGFNWKDPDHFRIVYLPRVDELAEIQ
                     EKMSRFLRQYRR"
     gene            3198..3650
                     /locus_tag="U1396_001627"
     CDS             3198..3650
                     /locus_tag="U1396_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM5342800.1"
                     /translation="MTQSYKTILVAVDGSKGAELALHKAIHVALRNQARLIIAHVIDT
                     RALHNVVAFDASVYESLEREAELLLEEYKQEALNAGLTDVQICIEFGNPKTLLAIDIP
                     KETGADLMLLGATGLNAFERLLIGSSSEYIMRHATIDLLIVRDGEKSL"
     gene            complement(3666..4184)
                     /locus_tag="U1396_001628"
     CDS             complement(3666..4184)
                     /locus_tag="U1396_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5342801.1"
                     /translation="MFQSKDDNFNRVKDFHFLMDGETQELPSVYDGQTALHRAGFKVE
                     ELVEFLHAASESEVEFHDFIQQLHRDLDTAAAKVSGKRGFGVSMQDQVDALLDILYFT
                     YGSFVLMGVDPEPIFQIVHTANMGKTFPDGKAHFDPITHKILKPDDWEERFAPEEKIQ
                     EELKRQMKRLDS"
     gene            complement(4186..5031)
                     /locus_tag="U1396_001629"
     CDS             complement(4186..5031)
                     /locus_tag="U1396_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5342802.1"
                     /translation="MTIKAVFFDIDGTLLTDNRMVSSSTILAINALKEKGILVGLATG
                     RDPRFVLQYMASLGLDLAIAYNGQYIFSREEVIYSQSLEPKQIEQIMEYAQTHHKDLS
                     FGTAKGIFGSKIMSAGTGNFAYRVTRMIPESWAGIINFIFNRLVRWISPQQETNLKGF
                     LFQPIYQLMLLTTERETQSLEMLFPNLSFTRSSPYATDIISKGNSKLSGIVKVADRYG
                     FELDEVMVFGDSNNDFEMLNEIQHSVAMGNGTKKVKQAASFVTDTNNRDGIYKALIHF
                     GVIEG"
     gene            5101..6060
                     /locus_tag="U1396_001630"
     CDS             5101..6060
                     /locus_tag="U1396_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEM5342803.1"
                     /translation="MKKILVLHTGGTISMQANHQGEVASSKINPMTQIDSPLEEIQVT
                     SLDFLNVPSPHIRLEHMMTLYQKIKEEQMNFDGFVITHGTDTLEETAYFLDTMAIPEK
                     PIVLTGAMRSSNELGSDGIYNYRTALRVAADDKSADKGVLVVMNDEIHAAKYVTKTHT
                     TNVSTFQTPTHGPLGLVTKREILYFKTAEPRVRFDLSTVTGTVSIIKAYADMDSILLD
                     SLTASSISGLVIEALGAGNLPPTVLPAIKKLLDQKIPIILVSRCFNGIAEPVYAYQGG
                     GIQLEQDGILFVKELNAQKARLKLLIALNAGLEEQSLADYIQG"
BASE COUNT         1932 a         1453 c          993 g         1704 t
ORIGIN      
        1 gctccccact atactattag tcaataattg tcgcaccgag tacatgacgc aaatggttaa
       61 gagcaaactg atgattctcc tccgtcaatg cagcaatggc tgatgagacc acctcaatac
      121 gatacccctt attataagca tcaatagctg tatgaagaac acaaatatca gacaaaacac
      181 ccgtcaagac aaccgtatct acaccacgct ctcttagtcg aacatccaaa tccgtcccag
      241 aaaaagcaga ataatgacgt ttatccatcc aacgaacacg cgcatgccct ttatgttttt
      301 gataaaaatc tgctaaagga ccatacaaat cacgtccttg cgtcccaatg atattatgac
      361 ttgggaaaag ctgagcttca ggatgaaatt catccccctc ctcatgacca tcaatcgcaa
      421 agaaaatata gtctccattt tcgaaagctt cttgcgtaac ctgagcaatt cgttcagaaa
      481 tagcctgagc tgattttcca gcagtcaact ttccttcatc tgccacaaaa tctattgtat
      541 aatcaatcga aatcaatgct tttgtcattt tagtagtcac gtttcttaat ttcatcaaaa
      601 atagctggga tgagaacttt caaataagtc cccttcattc ccaaagaacg actttcaata
      661 atccctgcac tctccaactt acgcagtgca ttcacaatca ccgagcgtgt aataccgata
      721 cgatctgcaa tcacagaagc agtcaattgc ccctcattgc cagccaattc acccaaaata
      781 gctgcaactg ctttcatttc tgagtaagat agtgtattta ccgccatatt aactgccgca
      841 cgacgacgga tattcttctc gtcttcttcc cgttggaaat taagtaactg aataccaact
      901 actgttgccg caatctcaac caaaatcaaa tcatcatcgt gaaactgctc atcattccgc
      961 caaataataa gcgaaccaaa acgaatcccc gttacgtgga taggcgctat cgttgtcagc
     1021 ccgtttggat aagtcgagcg tgattcgaca gggatggcag tcaactcgct ctcgacaggc
     1081 aaattaacct gcgtatcgta aacctgcgca actgctttta catatccttc tgggaattgt
     1141 ttgttttgga aaaattcttc cacacgatca ttgtttgtct cataactcat gtggtatccc
     1201 aaaacttcac cttcgctatt aataatacaa gaattgcaat caataatagc tgatagatgt
     1261 tcagcaatag cattgtaagg caattcttct gccaattgct cttcggaacg cttcaaaata
     1321 gaagtaatat tccgtgtctt ctctaataat gttgtcatat tttcctcttt actctgtaat
     1381 tgctttcagt atagcaaaaa atacataaaa tttcaacaat tatcagaata tttaccgttg
     1441 ttagaaaaac acaaacaatt tcatccaagc aaaaagaaat aggctgggca aaaagcccag
     1501 caccgcttct caaagttagt gtcaacatct cagcgcagtg gttgattggg tttaacagtc
     1561 cagtggactg ttaaaggttg gagataagat ttgcgaagca aatctcagca attcgcattt
     1621 tacactccaa atctggccta tacgactgat gcgaacagag ttcgcttcat ctccaccctc
     1681 aaactgtctc ccagacagtt tgagctgtgc gggggtggga gtgaaacagt ctgggaatag
     1741 actgtttcag ctcaacaact agaaataaag acttgttgac gaactcttct tatgaatggt
     1801 tgagttcttt cccactccca aaattccatt atctacgata ttgccgcaag aatcgtgaca
     1861 ttttttcttg aatttctgcc aactcatcaa cacgtggtaa atacacaata cggaaatgat
     1921 ctggatcctt ccagttaaaa cctcgaccat ggaccaaaag tactttttct tgcttgagga
     1981 aatccaatac aaattgttca tcatcctcaa ctctgtacat ctcacgatca atttttggga
     2041 atacatacag accagcctta ggttttacag cagaaagtcc cggaatatca ttaatcgcct
     2101 tggtaatgaa ctccctttgt tcatataagc gtccgccagg catcaagagc tcatcaaccg
     2161 attggtaacc tcccaaagaa gtttgaacaa cctgttgagc caaaacgttt gaacacaaac
     2221 gcatattgga caacatattc aagccttcaa tgtaaccttt tacatgcttt ttcggaccag
     2281 ataagaccat ccaacctact cggaaaccac aaatacgatg tgatttagac agtccattca
     2341 tcgtcacaac aaataaatct ggagccagtg tcgcaatagg gatatgaaca gctccatcaa
     2401 agaccatacg atcataaatc tcatcagaga aaatgatcaa ttcatgtcta cgagcaatat
     2461 caatgattcc ttttaaaatt tctttcggat agagagcacc agttggatta tttggattga
     2521 taaggacaat tgccttggtt cgagaagtca ccttggactc catatctgcc aaatctggat
     2581 accattcagc tgcttcatca caaacataat gaacagcttt accaccagcc aaactaactg
     2641 cggcagtcca gagaggatag tctggcattg gcaccaatac ctcatcacca ttatctagca
     2701 aaccttgcat agacataaca atcagctcac tcacgccgtt tccaagataa atatcttcaa
     2761 tgtcaacatt tggaaatttc tttagctgac aatactgcat gatagcctta cgtgcagaaa
     2821 aaattccctt actgttcgaa tatccctctg atttacgggc gttatgaatc aagtcacgaa
     2881 taacttcatc tggagcagta aaaccaaatt ctgcaggatt ccccgtattc aaacgtaaaa
     2941 tctgctctcc attggcacgc atacgcatgg cctcttccaa aacaggccca cgaatatcat
     3001 atgctacatc atccaatttt gttgacttgt taaattgctt catgtcgtca cctcgacttt
     3061 ctatcttttc tattgtactg taaaagctaa aaaagtacaa gaatccttta cattttctct
     3121 caaaaggctt ataataaaaa tgtaaggaac tactctacct atttcgggac aaagctcttc
     3181 tgaaaggagt gattattatg acacaatctt acaaaacaat actcgtcgct gtagacggct
     3241 ctaaaggagc agaattagct cttcataaag ccattcatgt cgcactacgc aaccaagcac
     3301 gtctgattat cgcccatgtg attgacaccc gtgctctcca caatgttgtt gcatttgacg
     3361 cctctgtcta tgaatcttta gaaagagagg cggagctcct cctcgaagaa tacaaacaag
     3421 aagctctcaa cgccggtctg accgatgtac agatttgcat tgaattcggt aaccctaaaa
     3481 ccctactggc tatcgatatt ccaaaagaaa ccggtgctga tcttatgtta cttggagcaa
     3541 ctggtctaaa cgcctttgaa cgtctcctga tcggatcctc atccgaatat atcatgcgcc
     3601 atgcaactat tgatttactc attgttcgcg atggagaaaa aagtttataa accaaaagac
     3661 ttgatttacg aatcaagtct tttcatctgt cttttcagct cttcctgaat cttttcctcc
     3721 ggcgcaaacc gttcttccca atcatcaggt tttaaaattt tatgggtaat tggatcaaaa
     3781 tgggccttcc catctggaaa agttttcccc atatttgcag tatggactat ctgaaaaatt
     3841 ggttctggat caacccccat caaaacaaac gaaccatatg taaaataaag aatatccagc
     3901 aaagcatcta cctgatcctg catcgaaacc ccgaaacctc tcttgccaga taccttagca
     3961 gcagcagtat ctaaatcccg atgaagttgt tgaataaaat catgaaactc aacttcagat
     4021 tctgaagctg catgtagaaa ttctaccaac tcctccactt taaaaccagc gcgatgcaaa
     4081 gccgtctgtc catcatacac actgggaagt tcttgtgttt caccatccat taaaaaatga
     4141 aaatccttta ccctattaaa attatcgtcc ttgctctgaa acatcttatc cctcaatcac
     4201 accaaaatga attaatgcct tataaatccc atcacgatta tttgtatccg taacaaagga
     4261 agcagcttgt tttacctttt tcgtcccatt tcccatcgct accgagtgct gaatttcatt
     4321 caacatttca aaatcattat tagaatcccc gaataccata acttcatcta actcaaaacc
     4381 atatcgatct gcaaccttta caatacccga taattttgaa tttcccttac tgataatatc
     4441 agtcgcatag ggactcgaac gcgtaaaaga caagttcgga aagagcatct ccaatgattg
     4501 tgtctccctt tccgtcgtca gcaacatcag ctgatagatt ggttgaaaga gaaaaccttt
     4561 caaattcgtt tcctgttgag gactaatcca acgtaccaag cgattgaaaa taaaatttat
     4621 gattccagcc caggactccg gaatcatacg cgtcacacga taggcaaaat ttcctgttcc
     4681 agcactcata atcttactac caaatatgcc tttagcagtt ccaaaagata aatccttatg
     4741 gtgagtttgc gcatactcca taatttgttc aatttgcttt ggctctaaac tctgactata
     4801 aataacttct tctcttgaaa aaatatattg accattataa gcaatggcca aatctagccc
     4861 taaactagcc atatactgca aaacaaaacg agggtcacgt cctgtagcta gaccaactaa
     4921 aatccccttc tctttcaaag cattaatggc gagaatagtt gaactactaa ccatacgatt
     4981 gtcggtcaat aaggtaccat caatatcgaa aaatacagcc tttatcgtca accaactcac
     5041 ctactttcta agaattatgt tacaattagt atatcacact ttgaaagaaa ctgaaaattt
     5101 atgaaaaaaa ttctagtact gcatacaggt ggaaccattt ctatgcaagc caatcatcag
     5161 ggtgaagttg catcgagtaa aatcaatcca atgacccaaa ttgatagccc actagaagaa
     5221 attcaagtga catccttgga ttttctcaat gttccaagtc cacacattcg cttagaacac
     5281 atgatgactc tataccaaaa aattaaagaa gaacaaatga acttcgatgg ttttgtcatt
     5341 acacatggca cagatactct agaagaaact gcctatttcc ttgatacgat ggctattcca
     5401 gaaaaaccaa ttgtattgac cggagccatg cgttcctcaa atgaactagg tagcgacgga
     5461 atttataact accgaacagc cctacgtgtg gctgctgatg ataaatccgc agataaaggt
     5521 gttctagtgg tcatgaacga tgaaattcat gctgctaaat atgttacaaa aacgcatacc
     5581 accaatgtct caacctttca aacaccaacc catggaccac tgggattagt caccaaacga
     5641 gagattctct attttaaaac tgctgaacca cgtgttcgat ttgacttatc aacagtcaca
     5701 ggaacggtct caatcataaa agcttatgca gatatggact ccattctcct tgattctctc
     5761 actgcaagct caatttccgg tttagtcatt gaagcactcg gcgccggaaa tcttccgcct
     5821 accgtccttc cagccattaa gaaactcctt gatcaaaaga tacccattat tctggtatct
     5881 cgctgtttta acggaattgc tgagcctgtc tatgcctacc aaggaggtgg catccaactg
     5941 gagcaagacg gcattctatt tgttaaagaa ttgaatgctc aaaaagcccg actcaaactc
     6001 cttatcgctc tcaatgcagg cttggaagag caaagcttgg cagattacat ccaaggttaa
     6061 tcgctgacga actatacaat at
//
LOCUS       DASGBY010000113         6032 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.113, whole genome shotgun sequence.
ACCESSION   DASGBY010000113 DASGBY010000000
VERSION     DASGBY010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6032
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.113"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            30..1820
                     /locus_tag="U1396_001631"
     CDS             30..1820
                     /locus_tag="U1396_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5342804.1"
                     /translation="MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQ
                     DGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDSTFGGFVDISMFGYDGERKLDDSG
                     LAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
                     IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIP
                     VADWEKSEYSRTAKLVGMGPWKIKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSP
                     DTIVSEMKAGNYDIAEMPVDQLDSYKDVSNLNIVGQLESSYEYISFNLGKYDEAANKN
                     VMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYS
                     YNPEKAKKLLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKE
                     VGLNVELYTGRTVEGKSFYNSVQANDPAIDMYAGGWSTGYDPNPSGLWGSVAAFNMSR
                     FVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVALNKRVK
                     NYDTNYGSASGKGIALENIELTADKGVVAE"
     gene            2197..3195
                     /locus_tag="U1396_001632"
     CDS             2197..3195
                     /locus_tag="U1396_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342805.1"
                     /translation="MATEKPLLDIKDLHVGFRIGDDYFDAVDGVDISLQKNEILAIVG
                     ESGCGKSTLATTIMGLHNPLNTKITGSIQYNDMELIGMNEAKYNTVRGNDIGMIFQDP
                     LASLNPLMTIGAQIDEALFYHTDLDANARTERVLELLAQVGIPNPKRTFKQYPHELSG
                     GMRQRIIIAMALSCKPPIIIADEPTTALDVTIQAQILDLLNDIQAETGSGIILITHDL
                     GVVAETADRVAVMYGGQFVEVAPVEELFTNPKHPYTRSLLKSNPQSGSEGGDLHVIEG
                     IVPPITKMVRKGCRFAPRIPWIGAEAHEENPSMHEVGPNHFVRCTCHETFYFEGEA"
     gene            3198..4139
                     /locus_tag="U1396_001633"
     CDS             3198..4139
                     /locus_tag="U1396_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342806.1"
                     /translation="MGFIEVKDLKVHYPIRSGFFNRVTDHVYAVDGVNIEFEEGKTYG
                     LVGESGSGKSTIGKAIIGLERATSGQIIYEGQNVTNKSRGKKGNFNRDVQMIFQDSLS
                     SFNPKKRILDIIAEPIRNFDRLSPDEEKKKVLQLLDTIGLNEEALIKYPHEFSGGQRQ
                     RIGVARALASNPRLIIADEPVSALDLSVQAQVLNYMKRIQDEFKLSYLFISHDLGVVQ
                     HMCDELFIMYRGRFVETGNKNDIYNNPQHIYTKRLLSAIPTIDPLNRLKNKEKRLAAE
                     KEYQEMQGQYYDENGRVYDLRSFSETHQVALPEGGQN"
     gene            4141..5097
                     /locus_tag="U1396_001634"
     CDS             4141..5097
                     /locus_tag="U1396_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010750774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342807.1"
                     /translation="MWKTVLRRLLMMIPQIIILSVIAFFVAKMMPGDPFTGLIDPNID
                     PAIIEQKRIAAGYYDPIPVQYFRWVGNLLQGDFGQSVIFKQPVVDVIMQRLNNTIGLS
                     LLTMVLTYLIALPLGMIAGRYQNSLADKIIGVYNFLTFSTPTFVFAILMLWMFGFSLG
                     WFPTRGSISGGVEGFAATLSRLHHMILPAITMAILSTTVTIQYLRTGIIDAKSQDYVR
                     TARAKGVPERVVYNRHIFRNSILPIASFLGYELTGLIGGSIFIENIFTYPGIGQLFFN
                     SISSRDYSVILALLLVFGMGTLLGTLISDIIMSIVDPRIRVK"
     gene            5111..6013
                     /locus_tag="U1396_001635"
     CDS             5111..6013
                     /locus_tag="U1396_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342808.1"
                     /translation="MSKENKKQVQSASTPPGGFRVIAREFMKDRLALTSLIILVTVLL
                     AVFIGALLLNQEQVMKVNLLGRYLEPGVDGYILGTDEGGKDIFGQLIIGARNSIIIGF
                     TITIITSIVGISVGLISGYYGGRLDGFLMRIVDFIMILPVTMLIIVFVTVIKNYTIYH
                     FILIMSAFYWTAKARLFRTRTLSEASLDYVNASKTLGTSDFMIMFREILPNLSSLIIV
                     NLTLNFAGNIGIETSLTYLGFGLPSTVPSLGTLIANARNADILENKTWIWLPAAIFIL
                     VMMLCINYVGQAFQRAADAKQRLG"
BASE COUNT         1770 a         1067 c         1338 g         1857 t
ORIGIN      
        1 gtcaaacaaa aagaaaacag aggtgtttta tgaaaaagac aacgaaactt tttgcacttg
       61 caggtgtgac tctcctttca gcatctgttc ttgcagcatg tggttcaaaa caatcaggtg
      121 cagcaaaaca ggaattgtca ttcccagctg aagtaaaaca agacggaaca gcagtgtctg
      181 acgctcagtt gaaatacgca tgggtatcac caacaacttc atcaggtctc ttgattgatg
      241 agttgactga aaatacgact gactcaacat ttggtggttt tgttgatatt tcaatgttcg
      301 gttacgacgg agaacgtaag ttggacgact caggtcttgc caaggctgaa tttgatgtga
      361 aaggtaaaaa aatcacaatt agcttgacag gcaaggatta caagtggtca gatggtgagc
      421 cattcacaat caacgactac atctttacaa ttaagtcaat ggcaagcaaa gactatacag
      481 gtattcgttt tgatgataaa ttcttgaaca ttgaaggcat gcaagaattt gttgatggaa
      541 aagcatcaga catctctggt attaagaaag ttgatgacta tacagtagaa ttgactgtaa
      601 aagaaatgtc accttcaatg atgtatgcag gtggtgatgt cccagcctat atccaaccag
      661 aacacatcta taaagacatc cctgttgcag actgggaaaa gagcgaatac tcacgtactg
      721 cgaagcttgt tggtatggga ccgtggaaga ttaaagaaat tgttaatggt gagtctatca
      781 cttacgtacc aaacgaatac tttttcaagg gtacgaaacc aaaaacaagc tcattgaaga
      841 ttgacatcgt atctcctgat actattgttt ctgaaatgaa agcggggaat tatgatattg
      901 ctgaaatgcc ggttgatcag ttagattcat ataaggatgt ttctaacttg aatatcgttg
      961 gtcagttaga gtcgtcttat gagtatatct cgtttaatct tggtaaatat gacgaagcag
     1021 ctaataagaa cgttatggat gaaaaggcta agatgaatga tgtgaaactt cgtcaagcaa
     1081 ttgcctatgc aattgatacc aagacagctg gcaaatcatt gtacaacggt ctttaccacc
     1141 ctgcaaaatc attgattatc tcattcttcg gggatattca tgattcagag ttggaaggct
     1201 attcatacaa tcctgaaaaa gcgaaaaagc ttttggatga agctggctac aaagatgtag
     1261 atggcgatgg tatccgtgaa ggtaaagacg gtaaggcgtt caaaattacc tttgctgctc
     1321 gtaaacgtac tgaagctaac gaagcgcttg tacaacaata tattgcttgg tggaaagaag
     1381 ttggcttgaa tgtcgaactt tacacaggac gtacagttga aggtaagtcg ttctacaact
     1441 cagttcaagc taatgatcct gctattgata tgtatgctgg tggatggtca acaggttacg
     1501 atccaaatcc aagtggtcta tgggggtctg tcgcagcctt caatatgtca cgtttcgtgt
     1561 ccgatgaaaa caccaagtta ttggaagcta tcagctcagc agagtcgttt gatgataaga
     1621 aaaacgttga gaactataag gcttggcaaa aatatgctca cgagcaagca tttgctattc
     1681 caacatttga atctgagtca attgtagcac ttaacaaacg tgtgaaaaac tatgacacta
     1741 actacggttc agcttcaggt aaaggtatcg ctcttgagaa tatcgaactt actgctgata
     1801 aaggtgtagt ggcagaataa tttgttagaa gacaatagaa tctgaaaaag ccaatttgat
     1861 tggctttttt cagattgcta ttggaatttt cagataattg tggtatagta gactcagtac
     1921 acaaaaatga gtccctacta acaaaaactc aagatgaaga acattaacct actcaattcc
     1981 taattgagac agtaataggg atggtcttga tttatgattg gatataggta cattttttac
     2041 ttctgggtaa tcgctatcaa acgataattt gatagaaata tgttattcta gagtagttat
     2101 ataaagtcag ttaatcaaac gttatatgaa cttgataatc gtaaggctat tgaattgatt
     2161 gagcttgatt agctggcaca taaaggagga aaaagcgtgg ctaccgaaaa accgctttta
     2221 gacattaaag atttacacgt cggtttccgt attggagatg attattttga cgctgttgac
     2281 ggtgttgaca tctcattgca aaaaaatgaa attttggcaa ttgtagggga atctggctgt
     2341 ggtaaatcaa ctttggcaac gaccatcatg ggcttgcata accctttgaa taccaaaatc
     2401 acaggaagca tccagtacaa tgatatggaa ttgattggca tgaatgaagc taagtacaat
     2461 acagtacgcg gtaatgatat tggtatgatt ttccaagatc ccttggcttc tctaaatcca
     2521 ttgatgacga ttggtgcaca gattgatgag gcgctgttct atcacactga tttggatgcc
     2581 aatgctcgta cagagcgagt tttggaactc ttggctcagg taggtattcc aaatcctaag
     2641 cggacattta aacagtatcc acatgagctt tcaggtggta tgcgtcagcg tatcattatt
     2701 gcgatggcct tgtcttgtaa accgccaatt attattgcgg acgaacctac aacagccttg
     2761 gatgttacaa ttcaagcaca aatcttggat ctcttaaatg atattcaagc ggagacaggt
     2821 tctggtatta ttttgattac ccatgacttg ggagtagttg cagaaactgc tgatcgtgtg
     2881 gctgtcatgt acggtggtca gtttgtcgaa gtagcgccag tagaagaact ctttaccaat
     2941 ccaaaacatc catatacacg ttcgctcttg aagtcaaatc ctcaatcagg tagcgaagga
     3001 ggcgatcttc atgttattga aggtattgtg ccgccgatta caaaaatggt tcgtaaaggt
     3061 tgccgttttg ctccgcgtat tccgtggatt ggagcagagg ctcatgaaga gaatccgagc
     3121 atgcacgagg taggtccaaa tcactttgtt cgttgtacct gccatgagac attctatttt
     3181 gaaggggagg cctaatagtg ggatttattg aagtaaaaga tttaaaagtc cattatccaa
     3241 ttcgtagtgg cttctttaac cgtgtgacgg accatgtcta tgctgtggat ggtgttaata
     3301 ttgagtttga agaaggaaaa acctatggtt tggtaggtga gtcaggttct gggaaatcaa
     3361 ccattggtaa ggcaattatc ggtttagagc gtgccacttc tggtcagatt atctatgaag
     3421 gacaaaatgt aaccaacaaa tcacgtggta aaaaaggaaa ctttaatcgt gatgttcaaa
     3481 tgattttcca agattctctt tcaagtttta acccgaaaaa acgtattttg gacatcattg
     3541 cagaaccaat tcgtaacttt gaccgtttat ctccagatga agaaaagaaa aaagttcttc
     3601 aactcttgga tacaatcggt ctaaatgaag aagctctgat taagtatcct cacgaattct
     3661 caggtggtca acgccaacgt atcggtgttg ctcgtgcttt ggctagtaat cctcgtttga
     3721 ttattgcaga tgagccggtt tctgccttgg atttgtctgt gcaggcacag gtcttgaatt
     3781 atatgaaacg tatccaagat gagtttaagc tcagctatct ctttatttcc catgacctcg
     3841 gtgttgtgca acacatgtgt gatgaattgt tcatcatgta tcgcggacgt ttcgtagaaa
     3901 caggaaataa gaatgatatt tataataatc cacaacacat ttatactaaa cgtttgttgt
     3961 cagctattcc aacgattgac ccactcaatc gattgaagaa taaagaaaag cgtttggctg
     4021 ctgaaaaaga atatcaagaa atgcaaggtc aatactatga tgaaaacggt cgtgtgtacg
     4081 atttgaggtc cttctcagaa actcatcaag tagcccttcc agaaggaggt cagaactaag
     4141 atgtggaaaa cagtattacg tcgtttactc atgatgattc cgcagattat tattttgagt
     4201 gtcattgcgt tctttgttgc gaagatgatg ccgggggatc cctttacagg attgattgac
     4261 cccaatattg atccagcaat cattgaacaa aaacggattg cggcaggtta ctatgaccca
     4321 atccctgttc agtatttccg ctgggtaggc aatcttttgc aaggagattt tggtcagagt
     4381 gttattttta aacaaccagt tgttgatgtc atcatgcagc gcttgaataa tacaattgga
     4441 ttatccctct tgacgatggt attgacttat ttgattgcac ttccattggg gatgattgca
     4501 ggtcgttatc aaaactcact tgcagataaa attattggcg tgtataactt cttgacattt
     4561 tcaactccaa ctttcgtttt tgccatcctc atgctctgga tgtttggctt tagtttgggc
     4621 tggttcccga cgcgcggttc gattagtggt ggtgtggaag gatttgcagc gactctcagt
     4681 cgtttacacc atatgattct gccagcgatt acaatggcta ttttgtcaac aacagttact
     4741 attcaatatc tccgtacggg gattattgat gctaagagtc aggactatgt tcgtacagct
     4801 cgtgccaaag gtgttcctga gagagttgtt tataaccgtc atatcttccg gaattctatt
     4861 ttgccaattg catctttctt gggctatgaa ttgacaggat taattggtgg ttctatcttt
     4921 attgaaaata ttttcactta cccaggtatc ggtcagttat tctttaactc tatttctagt
     4981 cgtgactata gtgttatctt agctttattg ttggtatttg gtatgggtac tttgttgggg
     5041 acattgattt cagatattat catgagtatc gtggatccac gtatccgtgt gaaatagaag
     5101 gaggagtaag gtgagtaaag aaaataaaaa acaagtacaa tctgcttcaa ctcctccagg
     5161 tggcttccgt gtcatcgcgc gggagtttat gaaagatcga cttgcattga cctcattaat
     5221 tatcttagtg acggttctct tagcagtctt tatcggtgca cttctgttga atcaagaaca
     5281 agttatgaaa gtcaaccttt tgggacgtta cttggaacca ggtgttgacg gctatatctt
     5341 ggggacagat gaaggtggta aagatatctt tggtcagctg attatcggcg ctcgtaactc
     5401 aatcattatc ggttttacca ttacgattat tacaagtatt gtcgggattt ctgtcggtct
     5461 gatttctggt tattatggcg gtcgtttgga cggattcttg atgcgtattg tcgatttcat
     5521 catgattttg ccggtgacaa tgttgattat tgttttcgtg acagttatca agaactatac
     5581 gatctatcat ttcattctca tcatgagtgc cttttattgg acggccaagg ctcgtctatt
     5641 ccgtacaagg actttgtcag aggcaagttt ggactatgta aatgcatcaa aaacattggg
     5701 aacaagcgac tttatgatta tgttccgtga aattttacca aacttaagtt cattgattat
     5761 cgttaacttg accttgaact ttgcgggaaa tatcggtatc gagacttcgt tgacttatct
     5821 tggtttcggt ctgccatcga cagtaccaag tttgggtacc ttgattgcca atgcccgcaa
     5881 tgcagatatt ttggaaaaca agacatggat ttggttgcca gcagccatct tcatccttgt
     5941 gatgatgctc tgtatcaact atgtcggaca agctttccaa cgtgcagcag atgctaagca
     6001 gcgtttaggt taattgtgaa aagggttcct tt
//
LOCUS       DASGBY010000114         5986 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.114, whole genome shotgun sequence.
ACCESSION   DASGBY010000114 DASGBY010000000
VERSION     DASGBY010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5986
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.114"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            85..552
                     /locus_tag="U1396_001636"
     CDS             85..552
                     /locus_tag="U1396_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5342809.1"
                     /translation="MTIRKARQSDISVLNELLQDILQVHHQVRPDIFKSAGQKFSEAE
                     LVALLENPDKPIFVFELEGQVVGHLFCELSTTTGDVLEPVKTLFIDDLCVANSARGQK
                     IGEQLYEFALSYAKEQGCHNLTLDVWADNAGAVRFYERQGMKPQKFRMEQIIN"
     gene            complement(574..1833)
                     /locus_tag="U1396_001637"
     CDS             complement(574..1833)
                     /locus_tag="U1396_001637"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEM5342810.1"
                     /translation="MSTFSGFYKKSRQERIDILRQNRSLSEDSLDILYKDENLPEAIA
                     GKMAENHLGTFSLPFSVLPELLVDGQTYSVPMVTEEPSVVAAASFGAKIIAKSGGFTT
                     TIHNRIMIGQVALYDISDHSRATQAILDHKESILETANQAHPSIVKRGGGARELTVES
                     KDEFLIVYLQVDVQEAMGANILNNMLEAIKDDLEELSKGQALMGILSNYATESLVTAQ
                     CHIAISSLATSSAIAQETAQKIALASKLAQVDPYRAATHNKGIFNGIDAVVIATGNDW
                     RAVEAGAHAYASRDGQYKGLSTWSIDGEHLVGSITLPLPIASVGGSIGLNPKVAVAFD
                     LLQQPKARQLASIIASVGLCQNFAALRALVTSGIQAGHMKLHAKSLALLAGAEEHEVD
                     QLAQLLRKEKHSNLETAQNLLAKMREH"
     gene            complement(2094..3248)
                     /locus_tag="U1396_001638"
     CDS             complement(2094..3248)
                     /locus_tag="U1396_001638"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEM5342811.1"
                     /translation="MNIGIDKIGFAAPDYVLDLADLAQARNVDPNKFKIGLLQSEMAV
                     APVTQDIISLGAKAAEAILTEEDKQTIDMVIVGTESSVDQSKAAAVTIHGLLGIQPFA
                     RSIEMKEACYGATAGLSLAKSHIAQFPESKVLVIASDIAKYGVASGGEPTQGAGAVAM
                     LVTANPQILVLNNDNVCQTRDIYDFWRPNYDKYPRVDGKFSTEQYTDCLTTTFDYYQQ
                     KTGKTLNDFAAMCLHIPFSKQGLKGLQAIAQDEETLSRLTERFQEAIVYNKVVGNIYT
                     GSIFLSLLSLLENSRALETGDQILFYSYGSGAVCEIFSGQLVEDYRDHLQENRLEQLN
                     QRTKLSVKEYEQVFFEEITLDETGSSLNLPEDQSPFALIKVDNHKRIYRK"
     gene            complement(3277..4461)
                     /locus_tag="U1396_001639"
     CDS             complement(3277..4461)
                     /locus_tag="U1396_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEM5342812.1"
                     /translation="MKKVAIVSAYRSAIGSFGGSLKDIEIADLGAQVLETALANKNIP
                     ADSVDEVIFGNVLSAGQGQNIARQIAIRAGIPQTASAYAVNKVCGSGLKSVLLAAQSI
                     MLGDNDVVVAGGIEIMSQAPYLSKTSRFGSKFGHISLEDSMLTDGLTDAFNDYHMGIT
                     AENVAERYHVSRAEQDAFTYSSQEKAAKAIAEGRFVDEIVPIRLKNRKGETIFATDEY
                     PRLTPIEKLATLRPSFKKEGTVTAANASGINDGCAVLVLMSDEKASELNIQPLAYIEA
                     YATSGLDPALMGLGPITASQKALQKLNKTVEDIDLFELNEAFAAQSIPVVKQLGIDPA
                     KVNVNGGAIALGHPIGASGSRILVTLIHELIKQEKELGLCSLCIGGGQGISLIVSNAQ
                     TN"
     gene            4687..5379
                     /locus_tag="U1396_001640"
     CDS             4687..5379
                     /locus_tag="U1396_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HEM5342813.1"
                     /translation="MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIK
                     EAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGLNKAEAA
                     AEFGDEQVHIWRRSYDTLPPEMAKDHEHSAHTDRRYAHLDDSVIPDAENLKVTLERAL
                     PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFELDE
                     NLNIVKEYYLEA"
     gene            5485..5868
                     /locus_tag="U1396_001641"
     CDS             5485..5868
                     /locus_tag="U1396_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5342814.1"
                     /translation="MASKKMLHACLRVENLEASQKFYEEAFGFKETRRKDYPEHKFTL
                     VYLALEGDGFEIELTYNYDHGAYIVGDGFSHLALSSDDLEGDNAKHKELGYPTTDIKS
                     LPGSPGRYYFVTAPDGYRVEVIRAD"
BASE COUNT         1689 a         1181 c         1366 g         1750 t
ORIGIN      
        1 ttcaaattct tcatcggtct gtagacctat tttgttaaaa aatgaacatg tgctataata
       61 ataaaaactc aaaaggagag tattatgaca atccgtaaag ctagacagtc tgatatttcg
      121 gtattaaatg aattgcttca agatatttta caggtgcatc accaggtacg accagatatt
      181 tttaaaagtg caggtcaaaa attttctgag gctgaattag tagcactttt ggaaaatcca
      241 gataagccta tttttgtctt tgagttagag ggacaagtgg ttgggcatct tttttgtgaa
      301 ttatctacca caacaggcga tgttttagaa ccagttaaaa ccttgtttat tgatgatttg
      361 tgtgtagcca attcggcgcg tggtcaaaaa attggtgagc aactgtatga atttgctctt
      421 tcctatgcta aggagcaggg ttgccacaat cttaccttgg atgtatgggc tgacaatgca
      481 ggagctgtcc gtttttatga acgccaagga atgaaaccac aaaagttccg tatggagcaa
      541 ataataaatt aaaaaagagg gagtccctct tttttaatgt tctctcattt ttgctaataa
      601 gttttgagca gtttctaggt tgctgtgctt ttctttccgc aggagttggg ctagttgatc
      661 tacttcatgc tcctcggcgc cagcaagtag cgctagggat tttgcgtgga gcttcatgtg
      721 accagcctga atccctgaag taacaagagc acgcagggca gcaaagttct gacagagacc
      781 gacagaagcg atgatagaag ctaattggcg tgcctttggt tgttggagaa ggtcaaaagc
      841 aactgctacc tttggattga gcccgataga gccaccgacg gaggcaattg gaagaggtag
      901 ggtgatggag ccgaccaagt gctcgccatc aatggaccaa gtagaaagcc ccttgtattg
      961 cccatcacgg ctagcataag catgggcccc ggcttcgact gcccgccagt catttcctgt
     1021 agcgataacg acagcatcta taccattaaa aatccccttg ttatgtgtcg cagcacgata
     1081 agggtccact tgtgctagtt tgcttgccag ggctattttt tgagcagttt cttgagcaat
     1141 ggcagagctg gtagccagac tagagatggc aatatggcat tgggcggtaa ccagtgactc
     1201 cgttgcatag ttggagagga ttcccatcaa agcctgtccc ttgctgagct cttctaagtc
     1261 atccttaata gcttctaaca tgttattgag gatattggct cccatggctt cttgtacatc
     1321 aacctgaaga tagacaatca aaaactcatc cttactctca acagtcaatt ctcttgcacc
     1381 gccccctcgt ttgacaatgg aagggtgtgc ttgattggca gtttctaaaa tactctcctt
     1441 atggtcaaga atcgcctgtg tcgctctgct atggtccgaa atatcgtaga gagcaacttg
     1501 tccaatcatg atacggttgt gaatagtcgt tgtaaaaccg ccagatttag cgatgatttt
     1561 ggctccgaaa gatgcagctg caaccacaga aggttcttca gtaaccatcg gtacagagta
     1621 agtttgtcca tccactagaa gttctggaag tacagaaaaa ggtaaggaaa acgttcctag
     1681 atgattttct gccatctttc ccgcaattgc ttctggcagg ttttcgtctt tgtatagaat
     1741 gtctaagcta tcttcggata gggaacgatt ctgacggaga atatcaatgc gctcttggcg
     1801 tgatttttta taaaatccgg aaaaagttga cataggttcc tctttctata ggaaagcgcc
     1861 ccttggtgag agccaaaggg cgccgttttg gggagcggga aagaacttga ctgatagaaa
     1921 agagttcgtc ttcccgcccc cgcacagttg attaggtcag atttagagtg tggtaacacg
     1981 aataaatctg ccaatcaacc actgcgctga gatgttgacg ctaactgtga aaagtgtgct
     2041 ggaaattcga tcagcctatc attcattatt ccaatgaatg ataggtaaaa tgcttattta
     2101 cgatagatac gtttgtgatt gtccactttg ataagggcaa agggactttg gtcttctggt
     2161 aggttaaggg atgaaccggt ttcatcaagg gtaatttctt caaagaagac ttgttcatat
     2221 tccttaacgc tgagttttgt acgctgattg agttgttcta aacgattttc ttgtaagtgg
     2281 tcgcgataat cttcaacgag ttgaccgctg aaaatttcac agacagcgcc gctaccatag
     2341 ctataaaaga ggatttgatc ccctgtctct aacgctctgc tattttccaa aagggaaaga
     2401 agagagagga agatagagcc agtgtagatg ttgccgacga ctttattata gacgatagct
     2461 tcctggaaac gttctgtcaa gcgactaaga gtttcttcat cctgagcaat agcttgcaat
     2521 cctttaagac cttgtttgga gaaaggaata tgtaagcaca tggcagcaaa atcgttgagg
     2581 gttttgcctg ttttttgttg atagtagtcg aaagttgtcg tcaagcaatc ggtgtactgt
     2641 tcagttgaaa atttaccatc aacacgtgga tatttgtcgt agttaggacg ccagaagtcg
     2701 tagatgtcac gtgtctggca gacattatca ttgttgagga ccaaaatttg tgggtttgcg
     2761 gttaccaaca tggcaactgc cccagcacct tgggtaggtt caccgccaga agcgactcca
     2821 tactttgcaa tatcactagc aatgactagg acttttgatt ctgggaattg agcgatatgg
     2881 cttttggcaa gacttagtcc agccgttgca ccgtaacaag cctccttcat ctcgatggag
     2941 cgagcgaagg gctgaatacc gagtaatcca tgaatggtga cggcggcagc cttactttga
     3001 tctacgctag attctgtgcc gacaataacc atgtcaatgg tttgtttatc ttcttctgtc
     3061 agaatggctt cggcagcctt tgccccaaga ctgataatat cttgagtgac aggagctaca
     3121 gccatttcag actgaagaag accaatctta aatttatttg ggtccacatt gcgggcttgg
     3181 gctaaatcag ccaaatctaa aacataatcg ggtgccgcaa atccgatttt atcaataccg
     3241 atgttcataa tatatccttt gtgtacaaat gataggttaa tttgtttgcg cattggaaac
     3301 gattagggag atgccttgac cgcctccgat acaaagtgag caaagaccaa gctctttttc
     3361 ttgcttgatt aattcgtgaa tcagagtgac taggattcga ctaccactag ctccgattgg
     3421 atgtccaagg gctatagcac caccattgac attgactttt gcaggatcaa tgccgagttg
     3481 tttgacaact ggaattgatt gggctgcgaa tgcttcattg agttcgaata gatcgatatc
     3541 ctcgactgtt ttattcagtt tttgtagcgc tttttggcta gcagtaatag gtccaagccc
     3601 catcaatgca ggatctaaac cgcttgttgc ataggcctca atataggcga gtggctggat
     3661 atttagctca ctggcttttt catcagacat gagtaccaag acagcacagc cgtcgttgat
     3721 gccagaagca ttggctgcgg tgacggttcc ttccttttta aaagatggcc gaagtgttgc
     3781 caatttttca attggcgtca gacgagggta ctcatctgtg gcaaaaatag tttcgccttt
     3841 ccgatttttt aatctaatag gaacaatttc gtcaacaaat cttccctcag caatagcttt
     3901 tgcagccttc tcttggctac tgtatgtaaa agcatcttgc tctgcgcgac tgacatgata
     3961 gcgttcagca acattttctg cagtaatgcc catgtgatag tcgttgaagg catctgtcaa
     4021 accatctgtt aacatggaat cttccagact aatatgacca aatttactac caaaccggct
     4081 agttttggat agataaggtg cctggctcat aatttcaatg cctccagcca caactacatc
     4141 attgtcacct agcatgattg actgggcagc taggaggact gatttgagac cggaaccaca
     4201 gactttattg actgcatagg cagaggctgt ctgaggaatg cctgcacgaa tagcaatttg
     4261 acgtgcaata ttttgtcctt gtcctgctga aagaacattt ccgaagataa cttcatcaac
     4321 gctgtctgca gggatgtttt tattagctaa ggctgtttcg aggacttgcg cccctaaatc
     4381 agcgatttca atatctttca gactacctcc gaaactgccg atggcagaac gataggcaga
     4441 cacgatagct acttttttca tgataactcc tatagtggta tcgttttgaa ctgtcgtgtt
     4501 cagccttact attataccat tattttgtat tttttctaag aagaaagata ggtctagaga
     4561 ctgaatttac atgaaagagt aatgaaagcg tacacagatt gtggaaaggc tggcattttt
     4621 ttaccttttc gtgtaaaata gagaagtata agaggggaac ctcaaaattt aaaggagaat
     4681 ccataaatgg taaaattggt ttttgctcgc catggtgagt ctgaatggaa caaagctaac
     4741 cttttcactg gttgggctga tgttgatttg tctgaaaaag gtacacaaca agcaatcgat
     4801 gcaggtaaat tgatcaaaga agcaggtatc gaatttgacc ttgctttcac atctgtattg
     4861 aaacgtgcta tcaagactac aaacttggct cttgaagctg cagatcaatt gtgggtacca
     4921 gttgaaaaat catggcgttt gaacgaacgt cactacggtg gtttgactgg cttgaacaaa
     4981 gctgaagcag ctgctgaatt tggtgatgaa caagttcaca tctggcgtcg ttcttatgat
     5041 actttgccac cagaaatggc taaagatcat gagcattcag cacacactga ccgtcgctat
     5101 gcacaccttg atgattcagt tattccagat gcagaaaact tgaaagtaac gcttgagcgt
     5161 gcccttccat tctgggaaga taaaattgct ccagcattga aagacggtaa aaacgtattc
     5221 gtgggtgcac acggtaactc aatccgtgcc cttgtaaaac acatcaaaca attgtctgat
     5281 gacgaaatca tggatgtgga aattccaaac ttcccaccac ttgtattcga attggatgaa
     5341 aacttgaaca ttgtgaaaga gtactacttg gaagcataat tcatttaagg cctgagttcg
     5401 ctcaggcttt tttagttttg aatatcggat ttttcataga gagtatggta tactggtggt
     5461 attaaatggt aggaggaatt tattatggca agtaaaaaaa tgttgcacgc ttgtttgcgt
     5521 gttgagaact tagaagcatc tcaaaaattt tatgaagaag catttggatt taaggaaacc
     5581 cgtcgtaagg actatccaga gcacaagttt accttggttt acttagcact tgaaggagat
     5641 ggctttgaga ttgaattgac ctacaattat gatcatggtg cctatatcgt aggcgacggt
     5701 ttctcgcatc tagctctttc ttcagatgat ttagaaggag acaatgctaa gcataaggag
     5761 ctgggctatc caacgacaga catcaagagc ttgccaggaa gtccaggtcg ttattatttt
     5821 gtgacagctc cagatggcta ccgtgtggaa gtcattcgtg cagattaatt tagaaaagat
     5881 tgcctaggca gtctttttct tttcaaaaaa atcagaaaat ggcagaaggg agggattagg
     5941 aagcaaatca attatttata cttaatgaaa atcaaaagta gcctag
//
LOCUS       DASGBY010000115         5959 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.115, whole genome shotgun sequence.
ACCESSION   DASGBY010000115 DASGBY010000000
VERSION     DASGBY010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5959
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.115"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..262
                     /locus_tag="U1396_001642"
     CDS             <1..262
                     /locus_tag="U1396_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEM5342815.1"
                     /translation="KYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVE
                     IQFGNKLLTVKVLEMKDSTKKEDALKMYEIISEKRIEKDEEI"
     gene            249..617
                     /locus_tag="U1396_001643"
     CDS             249..617
                     /locus_tag="U1396_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEM5342816.1"
                     /translation="MKKSKILQLNNAFIQSERKKTQHQLAERQQKNRFMGAILILVIF
                     LFMLPAYNLVGTYTNIQQQEKKLAELEKNYEELTKEQKQEAEMVAKLKNEEYAAKYVR
                     AKYQYSKEGEFVYNIPGLPK"
     gene            740..2020
                     /locus_tag="U1396_001644"
     CDS             740..2020
                     /locus_tag="U1396_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEM5342817.1"
                     /translation="MQKKLLVWLLPVLFGWQVVDSTEIPFELTAQEEYELTHTIYDQY
                     FQTIPQNPNVFQTENLYSDEELTIAGGQLQPNQHFSITDVLVNSKKELVFQIDDKGYI
                     LASRHLLFDDVIVTETTVEQTYWTKKGFTLLTSPIANEATEIKNDLQPYQAVMVSKIV
                     TTSLGDFAYVTDKGWIAVNNLSKTDNRVEAVQELLTNKYSKDTIGIYVKQLSTGQTAG
                     VNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAGGSGSLS
                     KTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAKTGSEWSMVTR
                     ETSAEIAGKMMESLYIQNGYVLESLLSTQFDNQRISKDISVPVAHKIGDADDVKHDVA
                     IVYAGSPFVLSIFTDKSNYDEITQIANDIYRILK"
     gene            2021..3289
                     /gene="tilS"
                     /locus_tag="U1396_001645"
     CDS             2021..3289
                     /gene="tilS"
                     /locus_tag="U1396_001645"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEM5342818.1"
                     /translation="MKDRFLKVTLDGHFFDKHNKVLVAVSGGLDSMNLFHLLYECKQV
                     LGIELGIAHINHGQREESVIEEKYLRQLAEESNVPFYLSYFEGVFSEEAARKWRYGFF
                     ATIMEKEGYTALVTAHHADDQAETVFMRLIRGGRLRHLSAIQPTQPFATGELIRPLLS
                     FKKADFEKLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIEFTLNNFAVDTNNLFQ
                     ALRDLTQDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDLQLSRPQFNEVLHILRSKAN
                     YYHLLKNDYMLEKDYHRFQIYKIGPETDSQPEKIMIKSEGIFSYGSYIFSLNHPLEEA
                     DSILYFPTENPIVVRRRQAGDTILINGVNKKLRRWFIDNKISQKVRQNALIIEQNGEI
                     YGITNLVSSDLSKSVKNDIIKATLYIKMKE"
     gene            3297..3839
                     /gene="hpt"
                     /locus_tag="U1396_001646"
     CDS             3297..3839
                     /gene="hpt"
                     /locus_tag="U1396_001646"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEM5342819.1"
                     /translation="MLDKDIKKILVSEEEIVAKCKELGQILATDYADKNPILVGILKG
                     SIPFMAELMKHIDAHVETDYMVVSSYHGGTESCGTVKIIKDLDNSVAGRHIIFIEDII
                     DTGRTLKELKELFALRQAGSIKIATLLDKPEGRVVEIEPDYTCFTIPNEFVVGFGLDY
                     DENYRNLPYVGVLKEEVYTK"
     gene            3861..5831
                     /gene="ftsH"
                     /locus_tag="U1396_001647"
     CDS             3861..5831
                     /gene="ftsH"
                     /locus_tag="U1396_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEM5342820.1"
                     /translation="MNNQPNKGFIKNPFLVILVIATIVTAFQFFNAGQQVATQEISYS
                     QVVTELKNNNVSEITYQPNSSVIEITGKYKTEQEAKDELASSIKLFQVSSKVKYKNFK
                     SLILPSETNLSELQALANENGVKVTIKPESSNGLWLNIVFNLLPLIIAGVFFMMMMNQ
                     GGGARGAMNFGRNKAKALEQSNIKVRFSDVAGAEEEKQELVEVVEFLKDPKRFTKLGA
                     RIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDA
                     KKAAPAIIFIDEIDAVGRQRGVGMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATN
                     RSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAADVDLKLVAQQTPGF
                     VGADLENVLNEAALVAARRNKTVIDASDIDEAEDRVIAGPSKKDRQVSAKEREIVAYH
                     EAGHTIVGLVLSNAREVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGG
                     RVAEEIIFNTQTTGASNDFEQATQMARAMVAEYGMSEKMGPMQYEGSHAMFGGQTTQK
                     HISEQTAYELDNEVRDLLNEARNKAADIIQSNRDTHKLIAEALLKYETLDSVQIKSLY
                     ETGKMPENIERDDEDVHPLSYEEVKEKINTKE"
BASE COUNT         2081 a          955 c         1174 g         1749 t
ORIGIN      
        1 taaatatttg aaagtatccc gcattattaa gcgtcgaaca gttgcgaagg aagttgccga
       61 taaaggacga ataaaagtca atgggatttt ggcgaaatct tcaacagatt taaaagtaaa
      121 tgatcaggtt gaaatccaat ttggtaataa actactcact gtaaaagtac ttgaaatgaa
      181 agattcgact aaaaaagaag acgcactgaa aatgtatgaa attatcagtg aaaaaaggat
      241 agaaaaagat gaagaaatct aaaattctac aactgaataa tgcctttatt cagtcggagc
      301 gtaaaaaaac tcaacatcaa ttggcagaac gccaacaaaa aaatcgtttt atgggtgcaa
      361 ttctcattct agttatcttt ctttttatgt tgcctgccta taatcttgtt gggacttaca
      421 ctaatattca gcagcaggaa aagaaacttg ctgaattgga aaaaaattat gaagaactga
      481 ccaaagaaca gaagcaggaa gcagagatgg ttgcaaaatt gaaaaatgag gaatacgcag
      541 caaagtatgt tcgggctaag tatcaatact ctaaagaagg ggaatttgtc tacaatattc
      601 cagggttacc aaaatgaccg aatctatttt taaaattgta gagcaatttt tacagcattc
      661 tgatgaaaaa ttagaagagt tgaatcaaaa gaatagagaa ttaaagttag aagaaaatga
      721 atcgtagaaa ggagggagta tgcagaaaaa actgctcgta tggttattgc cagttttatt
      781 tggatggcag gtagtcgata gtacagaaat accatttgaa ctcacagcgc aagaagaata
      841 cgaattgact catactatct atgatcagta ttttcaaact atccctcaaa acccaaatgt
      901 ttttcaaact gagaatcttt attcggatga agaactgact atagcaggtg gacaattaca
      961 gccgaaccaa catttttcta ttacggatgt tctagtcaat agcaaaaaag aattggtttt
     1021 ccaaatagat gacaagggtt acattcttgc aagtaggcat ctactatttg atgatgtaat
     1081 tgttacagaa actactgttg agcaaactta ttggacaaaa aaaggtttca cattgttaac
     1141 ctcaccaatt gctaacgaag ctacggaaat aaaaaatgat ttacaaccct atcaagctgt
     1201 tatggtttct aaaattgtga caacttccct aggtgatttt gcctatgtta cagataaagg
     1261 ttggattgca gtaaataatc tttctaaaac ggataataga gtagaagccg ttcaagagtt
     1321 gttgactaac aaatattcca aagatactat tggtatatat gtgaaacaat tgtcaacagg
     1381 tcaaactgca ggtgtaaatc aagagaaact attctattct gccagcattg ctaaactacc
     1441 aattctttat tacgttcaag agcaactgaa tgctgggtat attgatttga ctactaaagt
     1501 gaaatataca gccgaatcta tatccttccc aggagcttat gttgctggag gaagtggttc
     1561 actgtcaaaa actcctgata acaaagatta ttcagtggaa gaattgatca ataagactgc
     1621 taaagagtca gataatgtag ctagtaattt actttcttat tatgtagcta ataaattcga
     1681 ttccaatttt tatcaagtaa taactgctaa aacaggtagt gagtggagta tggttacacg
     1741 tgaaacttca gctgaaatcg cagggaaaat gatggaatcc ttatatattc aaaatggcta
     1801 tgtgctagaa agtttgttat ctactcaatt tgataatcaa cgtatttcga aagacatctc
     1861 agttccagtt gctcataaaa ttggcgatgc agatgatgtc aaacacgatg tagcgattgt
     1921 ttacgcaggg tctccttttg ttttatctat ttttacagat aaatcaaatt atgatgagat
     1981 tacacaaatt gcaaatgata tttacaggat tttaaagtaa atgaaagata gatttttaaa
     2041 agtgacactg gatggtcact tttttgataa acataataaa gtactagtag ccgtatctgg
     2101 tgggttagat tctatgaacc tattccatct tttatacgaa tgcaaacaag tgttagggat
     2161 tgaacttgga attgcccata ttaatcatgg acagagagaa gaatctgtca ttgaggaaaa
     2221 atatcttaga cagttagcag aagaaagtaa tgttcccttt tatctgtcct attttgaagg
     2281 tgttttttca gaagaagcag cgcgaaaatg gcgttatgga ttttttgcta caatcatgga
     2341 gaaggaaggc tacactgcac tagtgacagc ccaccatgca gatgatcaag cagaaactgt
     2401 ctttatgcga ttgattagag gagggcgttt acgtcactta tcagcaattc aaccgactca
     2461 gccttttgca acaggagaac ttattcgacc acttttatct tttaaaaagg cagattttga
     2521 aaagctattt cattttgaag attgcagcaa tgcagatttc aaatattttc gaaatagagt
     2581 cagaaatgac tatttaccaa agttaaaaca ggaaaatcct aaaatcgaat ttactctcaa
     2641 taattttgca gttgatacaa ataatctatt tcaagcgcta agagatttga cacaggattt
     2701 atccgttaca gatgtgatga gttttcaaca acagacacct gcggtacaaa gttatctatt
     2761 agaggaatat ttggaaaaat ttcctgattt acagctctct cgtccacaat ttaatgaagt
     2821 attacacatc ttgcgttcaa aagctaacta ctatcattta ttgaaaaatg attacatgtt
     2881 agagaaggat tatcatcgtt ttcaaattta taaaatagga ccagagacgg atagtcaacc
     2941 agaaaaaatc atgataaaat cagagggtat tttttcttac ggttcatata ttttttctct
     3001 caatcatcct ttggaagaag cggatagtat tttatatttt cctacagaaa atccaattgt
     3061 agtgaggaga aggcaggctg gggataccat tttaataaac ggagtaaata aaaaactccg
     3121 ccgttggttt attgataata aaatctcaca gaaagttcga caaaatgcgc ttattatcga
     3181 gcagaatgga gaaatttatg gaattacgaa tcttgttagc agtgatttga gtaaatcagt
     3241 aaaaaatgat ataatcaaag ctaccttata tataaaaatg aaagagtaga acaactatgt
     3301 tggacaaaga tattaagaaa attcttgttt cagaagaaga aatcgttgca aaatgcaaag
     3361 aactcggtca aattctagca acagactatg cagataagaa tcctattctt gtaggaattt
     3421 taaaaggttc tatcccattt atggcagaat taatgaaaca tattgatgcc catgtagaaa
     3481 cggattatat ggttgtttct agctaccatg gtggtactga gagttgtggt accgttaaga
     3541 ttatcaagga tttggataat agtgttgcag gtcgacatat catctttata gaggatatta
     3601 ttgacacagg ccgcacatta aaagaattga aagaactctt tgctttgcgt caagcaggtt
     3661 ctattaaaat tgctactctt cttgataaac cagaaggtcg tgttgttgaa atcgagccag
     3721 actatacttg ctttactatt ccaaatgaat ttgtagttgg atttggctta gattatgatg
     3781 aaaattatcg taatcttcct tatgttggtg tactcaaaga ggaagtttac acaaaataga
     3841 aaaaggtttc ctactatatt atgaacaatc aaccaaataa aggatttata aaaaatcctt
     3901 ttctcgttat tctcgttatt gccactattg ttacagcctt tcaatttttt aacgctggtc
     3961 agcaagtagc aactcaagaa atcagttatt cacaagtagt aactgaattg aaaaataata
     4021 atgtatctga aattacttat caaccaaatt caagtgttat tgaaattact ggtaagtaca
     4081 aaacagaaca ggaagctaaa gatgagttag cttcatctat taagttattc caagtttcta
     4141 gtaaagttaa gtataaaaac tttaagtcac taattttacc gtcagaaacg aatttgtcag
     4201 agctacaagc tcttgcaaat gaaaatggag taaaggttac tattaaacct gaaagttcaa
     4261 atggactttg gttaaatatc gtctttaatt tgttaccgct tatcattgct ggtgtattct
     4321 tcatgatgat gatgaaccag ggtggtggag cacgtggtgc aatgaacttt ggacggaata
     4381 aagctaaagc tttggaacaa agtaacatca aggtacgttt ctcagatgta gcaggtgcag
     4441 aggaagaaaa acaagaatta gttgaagttg ttgaattttt gaaggatcca aaacgcttta
     4501 ctaaacttgg agcacgtatt ccagcaggtg tactactaga gggtcctcca ggaaccggta
     4561 aaaccttgct tgccaaagca gtagcgggtg aagcgggtgt accattcttc tccatttctg
     4621 gttcagattt tgttgaaatg tttgttggtg tcggtgccag ccgtgttcgt tcattatttg
     4681 aagatgcaaa aaaagcagca ccagccatta ttttcatcga tgaaatcgat gctgtcggtc
     4741 gccaacgtgg tgtcggcatg ggtggcggta acgatgaacg tgaacaaacc ctcaaccaac
     4801 tcttaattga aatggatggt tttgaaggga atgaagggat tattgtcatt gccgcaacca
     4861 accgtagtga tgttttagac cctgcccttc ttcgtccagg tcgttttgac cgtaaagtat
     4921 tggttggtcg tccggatgtt aaaggacgtg aagcaatcct taaagttcat gcgaagaata
     4981 aaccactagc agcagatgta gatttgaaat tagtagcaca acaaacacca ggatttgttg
     5041 gtgcagattt agagaatgtt cttaacgaag cagcccttgt agctgcccgt cgaaacaaga
     5101 ctgtcattga tgcttcagat attgacgaag cagaagatcg tgtcattgca ggtccttcta
     5161 agaaagaccg tcaagtttca gccaaagaac gcgaaatcgt tgcctaccat gaagcaggtc
     5221 atacaattgt tggtctcgta ctatcaaatg cacgtgaagt tcacaaagta acaattgttc
     5281 cccgcggtcg cgcaggtgga tacatgattg cccttcctaa agaagatcaa atgcttcttt
     5341 ctaaagaaga tatgaaggag caattggctg ggcttatggg tggtcgtgtt gcggaagaaa
     5401 ttatttttaa tacacagacc acaggtgcct caaatgactt tgaacaagct acacagatgg
     5461 ctcgtgctat ggttgcagaa tatggtatga gtgaaaaaat gggaccaatg cagtatgaag
     5521 gcagtcatgc aatgtttggt ggacaaacaa ctcaaaaaca tatttctgag caaactgcat
     5581 atgagttaga taatgaagta cgtgatttgt taaatgaagc tcgaaataaa gctgcagata
     5641 ttattcaatc aaaccgtgat acacacaaac tgattgcaga agcattgctt aaatacgaaa
     5701 ccctagacag tgttcagatc aaatctctct atgaaacagg caaaatgcca gagaatattg
     5761 aacgtgatga tgaagatgtt cacccccttt cttatgaaga ggtaaaagag aaaattaata
     5821 cgaaagagta gtataaaaat actcttggca agacattccc tcactctcaa ccactaaaat
     5881 aaccacaaat ccttcgctaa gtacataatc ttggcgaggg ctttttttac aaaaaagggc
     5941 atttacaaga aaaacgaat
//
LOCUS       DASGBY010000116         5940 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.116, whole genome shotgun sequence.
ACCESSION   DASGBY010000116 DASGBY010000000
VERSION     DASGBY010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5940
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.116"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(6..551)
                     /locus_tag="U1396_001648"
     CDS             complement(6..551)
                     /locus_tag="U1396_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5342821.1"
                     /translation="MANVLFLVGSLRDGSFNHQMAKKAEAFLADKAQVSYIDLAKIPL
                     FNQDIETPILPEIAELRAQVDAADAIWIFSPVYNYAIPGIVKNALDWLSRSLDLSNPK
                     GPSILQDKITTVSAVANSGHDHLFKDFQHLLPFIRTQIAGEFTGSTINPEAWGTGVLE
                     LSDETLAKLEQQAADLLAAIQ"
     gene            complement(614..1063)
                     /locus_tag="U1396_001649"
     CDS             complement(614..1063)
                     /locus_tag="U1396_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5342822.1"
                     /translation="MRTVEQSLNENKHALHSLVVFRRAANTITKSELETIKKYGLTVC
                     QFGVMEALYNKGNLRIQDLIDKLLSTSGNMTVVIKNMIRDGYIYKTIDTNDRRASLIA
                     LTPLGRETIEKILPEHYDHVGEIFSVLSSEEQDQLAEILKKFKNQQT"
     gene            1366..1863
                     /locus_tag="U1396_001650"
     CDS             1366..1863
                     /locus_tag="U1396_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5590 domain-containing protein"
                     /protein_id="HEM5342823.1"
                     /translation="MEKKIFQLLEWMASKTGQLVLGSFILLSVVTFSIFTIWDIAAAP
                     FNNVRSHAVAVATEYADLQTVNDFSIYNGTETYFCVFGVTSQGEEVAVLIPEASSTVY
                     VYPLVQGISQEEAQAIAKKNGASQVERTILGLRDGKPIWEVKSGTAYYLVEFETGNFI
                     KREGL"
     gene            1860..3041
                     /locus_tag="U1396_001651"
     CDS             1860..3041
                     /locus_tag="U1396_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5342824.1"
                     /translation="MSKLSRRVLEMEESVTLAAGARAKALKAEGRDILELTLGEPDFV
                     TPKNIQEAAIKSIEDGKASFYTVASGHPELKDAVNTYFENFYGYSIERNQVVLATGAK
                     FVLYAFFAAVINPGDEVIIPTPYWVSYADQIKMNDGVPVFVTAREEHNFKVTVDQLEA
                     ARTDKTKVFLLNTPSNPTGMIYSREELEAIGNWAVEHDILILADDIYGRLVYNGNGFT
                     PISSISESIRQQTIVVNGVAKAYAMTGWRVGFAVGNPEIIAAMSKIVGQTTSNLTTAA
                     QYAAIEAFTGPQDTVETMRQAFEERLNTIYPLLAEVPGFEVIKPEGAFYLFPNVKKAM
                     EMKGYTDVTEFTTAILEEVGVAMVTGAGFGAPENIRLSYATDMDTLKEAVARLHTFMK
                     K"
     gene            3056..4402
                     /gene="asnS"
                     /locus_tag="U1396_001652"
     CDS             3056..4402
                     /gene="asnS"
                     /locus_tag="U1396_001652"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEM5342825.1"
                     /translation="MSRKLITINQVKDYVGQEVTIGAWVANKSGKGKLAFLQLRDGTA
                     FFQAVALKPNFIEKFGEEAGTEKFDVAKRLSQETSVYVTGIVKEDERSKFGYELDVTD
                     LEVIGESQDYPITPKEHGTDFLMDNRHLWLRSRKQIAIQQIRNAIIYATYEFFEKNGF
                     IKFDSPILSGNAAEDSTELFETDYFGQPAYLSQSGQLYLEAGAMALGRVFDFGPVFRA
                     EKSKTRRHLTEFWMMDAEYSFLSHEESLDLQEAYVKALIQGVIDRAPQALETLERDVD
                     ALKRYIAEPFKRVAYDDAITLLQEHEADEDTDYEHIEHGDDFGSPHETWISNYFGVPT
                     FVVNYPASFKAFYMKLVPGNPERVLCADLLAPEGYGEIIGGSMREDNYDALVAKMDEL
                     GMDKSEYEFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPRMLHRLHP"
     gene            4674..4901
                     /locus_tag="U1396_001653"
     CDS             4674..4901
                     /locus_tag="U1396_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation repressor RelB"
                     /protein_id="HEM5342826.1"
                     /translation="MGIVSLRLNDAEEEIFRSYAIHTGKSLSELFKTALAEQIEDQLD
                     YEIGIKALKKFQENPVTHSIDDVLAELEDGL"
     gene            4891..5160
                     /locus_tag="U1396_001654"
     CDS             4891..5160
                     /locus_tag="U1396_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5342827.1"
                     /translation="MAYKLVLSDDALKQLKKMDRHVGMMLAKDLKKRLDGLENPRQFG
                     KALVGDYKGLWRYRVGNYRVICDIIDNKMVILALEIGHRKEIYKK"
     gene            5566..>5940
                     /locus_tag="U1396_001655"
     CDS             5566..>5940
                     /locus_tag="U1396_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5342828.1"
                     /translation="MKQESLGKEIIRLSLPATVENIFQTLVGFVDTLLIAQLGLVAVT
                     AVGLANTILNVYLAVYMALGVGATALIARSIGAGDRESLTFHVRQALVLSVGVGVLFG
                     LLSLVFGRQMLVLMGADAESLAG"
BASE COUNT         1657 a         1104 c         1407 g         1772 t
ORIGIN      
        1 tttgattatt gaattgctgc caacaggtca gctgcttgtt gctcgagttt tgctagagtt
       61 tcgtcagata actctaatac acctgttccc catgcttctg gattaatggt tgaacctgta
      121 aattcaccag caatctgagt acggataaat ggaagaaggt gttggaagtc tttgaatagg
      181 tggtcgtgac cactgtttgc gacggcagag acagttgtga ttttatcttg taggatagat
      241 ggtccttttg gattggataa atcgagcgaa cgactgagcc aatcgagagc attttttacg
      301 atgcctggga ttgcatagtt atatactggt gagaaaatcc agatagcatc cgcagcgtct
      361 acttgtgcac gtagctctgc aatttcagga aggataggtg tctcgatgtc ttggttgaat
      421 aggggaattt ttgcaagatc aatgtaagat acttgagcct tatcagccaa gaacgcttca
      481 gctttttttg ccatttgatg gttaaaagaa ccgtcacgta gtgaaccaac taaaaacaat
      541 acgtttgcca tgatggcctc cttttcataa aaacataaat ttagtatatc gtatttgtct
      601 tttgttggca atcctaggtc tgctggttct tgaatttttt aagtatctcg gctaattggt
      661 cttgttcttc tgaactaagg acagaaaaaa tctctccaac gtgatcataa tgctctggaa
      721 ggattttttc aatggtttcg cgtccaagtg gagtgagagc aatcaaggaa gcacgacggt
      781 catttgtatc gatagtcttg tagatataac catctcgaat catgtttttt ataacgacag
      841 tcatgttgcc agaagtactt aataatttat caattaagtc ttgaattcgc agatttcctt
      901 tgttgtagag tgcctccatc actccaaact gacaaactgt cagtccgtat tttttgattg
      961 tttctaattc tgattttgtg atagtattag ctgctctgcg aaagacgact agactgtgaa
     1021 gtgcatgctt gttctcgttt aaagattgtt caacagttct catgagaata ttttagcaat
     1081 aaatagttcg gttatcaagc aaaaaaagtt aaatcctata ttcataggta aagtactttt
     1141 atggaaaaga tagtttttag ttaatcaagt tcgttttttg aggtaatact aactgtactg
     1201 gaaaaaaacg agcaatgagc atttgagaaa tagtcttaga tggaagtgca aaactgtgaa
     1261 tgtaggtttt tatatccttt tctttgtgtg aaggaaaagg aaattttatt tacaatcacg
     1321 gaaagaatgg aaatatgctt taatttgtag tataatggga ctactatgga aaaaaagatt
     1381 tttcaactgt tggagtggat ggcttccaag actggtcagt tagtgttggg ctcttttatc
     1441 cttctcagtg ttgtgacttt ttcaattttt actatttggg atattgctgc tgcccctttc
     1501 aacaatgtgc gtagtcatgc agttgcagta gctacagaat atgctgattt gcaaactgtc
     1561 aatgattttt ctatctacaa tggtactgaa acctattttt gtgtatttgg tgtcaccagt
     1621 cagggagaag aggttgcagt tttgattcca gaggcttcta gcacagtata tgtctatcct
     1681 ttagttcagg gaatttcgca agaagaagcg caagctattg ccaagaaaaa cggtgcaagc
     1741 caagtagagc gaactattct aggtttaagg gatggcaaac ctatttggga agtcaagtca
     1801 ggtactgcct actatttagt tgaatttgaa acagggaact ttatcaaacg ggagggctta
     1861 tgagcaagtt atcaagacga gtcttagaga tggaagaaag tgtaactctg gcagcaggtg
     1921 cgcgtgcaaa agccttgaag gcggaaggac gtgatatttt agagctgacc ttgggtgagc
     1981 cagacttcgt cacaccgaaa aatattcaag aagctgctat taagtctatc gaagatggta
     2041 aggcgagttt ttatacggta gcttcagggc atcctgagtt gaaggacgca gtcaatacct
     2101 actttgagaa tttctatggc tactctatcg aacgcaatca agtcgttctt gcgacaggtg
     2161 ctaagtttgt tctttatgct ttctttgcgg cggtcatcaa tcctggtgat gaggtgatta
     2221 ttccgacacc ttactgggtt tcttatgcag atcaaatcaa gatgaatgat ggggtgcctg
     2281 tctttgtcac tgcaagggaa gagcataatt tcaaggtaac ggttgaccag ctggaagcag
     2341 ctcggacaga taagaccaaa gtattcctac tcaatactcc ttctaatccg actgggatga
     2401 tttacagtcg tgaggaattg gaagcaattg gaaactgggc tgtagagcac gatattctca
     2461 tcttggcaga cgatatttat ggtcgtttgg tctataatgg aaatggcttc acaccgattt
     2521 caagcatttc agaaagcatt cgtcagcaga ctattgttgt caatggggtg gcaaaggcct
     2581 atgctatgac aggttggcgg gttggttttg ccgttggtaa tcctgaaatc attgcggcca
     2641 tgagtaagat tgtcggacaa acgacttcga atttaacgac tgctgctcag tatgcggcca
     2701 ttgaagcctt tacaggtccg caagatacag tagaaaccat gcgtcaggcc tttgaagagc
     2761 gactcaatac catttatccc ttgctggcag aagtaccagg ttttgaagtg attaagccag
     2821 aaggggcctt ctatctcttc ccgaatgtta aaaaagctat ggaaatgaaa ggctacacag
     2881 atgtaactga atttaccaca gccattttgg aagaagtggg agttgcaatg gtgacaggtg
     2941 ctggttttgg agctcctgag aatatccgcc tcagctatgc gacagatatg gacacgctca
     3001 aagaagcagt ggctcgacta catacattta tgaaaaaata aaaagaggaa aaataatgtc
     3061 tagaaaattg attaccatta accaagtcaa agattatgtc ggtcaagaag tgactattgg
     3121 tgcctgggtt gccaacaaat caggcaaggg caagttagcc ttcctgcaat tgcgtgacgg
     3181 aacagccttc ttccaagcag ttgccttaaa accaaacttc atcgaaaaat tcggtgaaga
     3241 agctgggact gagaagttcg atgtagcaaa acgcctcagc caagaaacgt ctgtctatgt
     3301 gacaggaatt gtcaaggaag atgagcgttc taagtttggt tatgagttgg atgtgacaga
     3361 ccttgaagta atcggtgagt cacaagatta cccaatcaca ccaaaagaac acggtacgga
     3421 cttccttatg gacaaccgtc acctctggtt gcgttctcgt aaacagatcg ctatccagca
     3481 aatccgtaac gccatcatct atgcgactta tgaattcttt gaaaagaatg gctttatcaa
     3541 gtttgatagc ccaatcttgt ctggaaacgc tgcagaagat tcgacagagt tgttcgaaac
     3601 tgactacttt ggtcaacctg cctacctcag ccaatctggt cagctgtacc tggaagctgg
     3661 tgccatggcc cttggtcgtg ttttcgactt cggacctgtt ttccgtgcgg aaaaatcaaa
     3721 aactcgccgt cacttgacgg agttctggat gatggatgcc gagtattcat tcctcagcca
     3781 tgaagagtca cttgatttgc aagaagctta tgtcaaagcc ttgattcaag gtgttatcga
     3841 ccgtgctcca caagccttgg aaactcttga gcgtgatgtg gatgctctca aacgctacat
     3901 tgcggagcca ttcaaacgtg tggcttatga tgatgccatt acccttcttc aagagcatga
     3961 agctgatgaa gatacagact acgaacacat cgagcatggt gatgactttg gatcgccaca
     4021 tgaaacttgg atttcaaact actttggtgt accgactttc gttgttaact atccagcaag
     4081 cttcaaggcc ttctacatga agctagttcc aggtaatcca gagcgcgtgc tttgtgcgga
     4141 cctcttggca ccagaaggct acggtgaaat catcggtggt tctatgcgtg aggacaatta
     4201 cgatgccttg gtagccaaga tggacgagct cggcatggat aagtcagaat acgaattcta
     4261 ccttgaccta cgtaagtacg gttcagtacc acacggtggt ttcggtatcg gtatcgagcg
     4321 tatggtgact tttgttgcag gtacaaaaca catccgtgaa gccattccgt tcccacgtat
     4381 gttgcaccgc ttgcatccgt aatacagtcg ttcagttttt cctttattac gtcgacgtat
     4441 gaggaaactc cgtttcctta tttccaagtt caaataatct catcattatt tgaactcgtt
     4501 ttgccgtacc ttagtacagt ctgcagctcg ttgcctagta ctaaaagtaa actgaaagac
     4561 tgcgaaataa atattcactg acagactaca aacgtggtct gtttttctgg tgtcaattga
     4621 cattttgaac gaattgtttt acaatgtatt acaagaagaa agtaggtgga atgatgggaa
     4681 ttgtatcctt gcgattaaac gatgcagaag aagaaatttt cagaagctat gctattcata
     4741 caggaaaaag cctgtctgag ctattcaaaa ctgcacttgc tgaacagata gaagaccagt
     4801 tggactatga aattggtatc aaggctttga agaaattcca agaaaatcct gttacacact
     4861 cgattgatga tgttcttgcg gagttagaag atggcttata agcttgttct cagcgatgat
     4921 gctttgaagc agttgaaaaa aatggacagg catgtgggga tgatgcttgc taaggatttg
     4981 aaaaaacgtt tggacggttt ggagaatcca agacaatttg ggaaggcctt ggtaggagac
     5041 tataaggggc tgtggcggta tagagtgggg aattaccgtg taatttgtga tattattgat
     5101 aacaaaatgg tcatcctggc ccttgaaatc gggcaccgga aagaaatcta taaaaaatga
     5161 agttctaggt aactaggctc ggtatcggtg tacttctcag agttcgtgtc aacatctcag
     5221 cgcagtggtt gattggcttt aacagtccag tggagtgaag cagttctggg aactgtttca
     5281 gcccgagcct tgaagcagaa aagctaggta aaaaggttgg agataaggtt tgcgaagcaa
     5341 atctcagcaa ttcgtgtttt ccactccaaa tctgacctat acgactgatg cgaactttgt
     5401 tcgccttatc tctaacctcc aaaggttccc tgaaactttg gagctatgcg ggggtggaga
     5461 gatgaactcc tttttgactt atcgagttct tccccactcc ctgttttctt tctttttcac
     5521 cgagttttat ttataattat tctaaataaa atcgtggaga ggaaaatgaa gcaagaaagt
     5581 ttaggaaaag aaattattcg tttgtccttg cctgctacgg tggaaaatat ctttcagacc
     5641 ttagttggtt ttgtggatac cctcttgatt gcacagctgg ggctggtagc ggtgacggca
     5701 gttggtcttg ccaatacgat tttgaacgtc tatttggcgg tctatatggc tttgggagtt
     5761 ggggcaacag ctttgattgc tcggtctatt ggcgcaggag atagggaatc tcttaccttt
     5821 catgtccgtc aagccttagt gctttcagta ggtgtaggtg tgctatttgg tttactatcc
     5881 cttgttttcg ggcggcagat gctggtctta atgggagcag atgcggagag tttggctggt
//
LOCUS       DASGBY010000117         5917 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.117, whole genome shotgun sequence.
ACCESSION   DASGBY010000117 DASGBY010000000
VERSION     DASGBY010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5917
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.117"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..311)
                     /locus_tag="U1396_001656"
     CDS             complement(<1..311)
                     /locus_tag="U1396_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM5342829.1"
                     /translation="MGANQETLMYTLEKSIKKKADLFEHSFSAYAVRSILASLYLGLG
                     IVISLYTADKLNHVAEGLGKFSYGLMFGWGLLMILYMNAELGTSNMMYMTVASHRKTI
                     PT"
     gene            452..1297
                     /locus_tag="U1396_001657"
     CDS             452..1297
                     /locus_tag="U1396_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM5342830.1"
                     /translation="MDVTWTVKYITEFLATALLIIIGNGTVANVDLKGTKGNNSGWIL
                     IAIGYGLAVMMPALMFGNVSGNHINPAFTLGLAVSGLFPWAHVAQYIVAQLLGAMFGQ
                     LVVVAVYKPYFLKTENSNHILGSFSTISALDNGTKESRKAATTNGFLNEFVGSFVLFF
                     GALALTKHFFGSELVGKLIEQGYDKTVAETMTAPYTSGSIAVAHLGIGFLVMALVAAL
                     GGPTGPGLNPARDLGPRIVHALLPKSVLGENKADSKWWYAWVGVCAPIIASIAAVALF
                     KFLYL"
     gene            1430..2962
                     /locus_tag="U1396_001658"
     CDS             1430..2962
                     /locus_tag="U1396_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 family protein"
                     /protein_id="HEM5342831.1"
                     /translation="MSDVIAFGYGSSRAEMQLKRLNRHGIIAGATGTGKTVTLKVLAE
                     QLSDAGIPVFLSDIKGDLNSLVAANTKEIDPSRLEKTHYLDYSPVGYPVELWDVLGEN
                     GTPVRMTISELGPVLLTRLLGLNDTQESILNIVFSVADERGLLLIDLMDLRAMLNFVA
                     ENAAELSQYYGNIPARSVGAILRSLVVLEQQGGKIFFGEPSLDIADLMRTAEDGRGVI
                     NVLQATQLFNQPTLYSTVLLSLLSELYEVLPEVGDLDKPKMVFFFDEAHVLFKDTPKV
                     LLEKIELIVRLIRSKGVGVFFVTQNPTDIPDSVAAQLGNRIQHGLRAFTPKELKTVAT
                     VAETFRQEGDEDLVKVIQELQVGEAVVSTLQVDGTPSFADRVLIYPPKSMLGTVEPSA
                     LLSVINNSPLMEKYADAVNRESAHEQILAMTEAKEAELIKKAEQAEAEKQAEKEAKAA
                     AKMEEKAQKEAAKAAQKTSQPASRKTDSMMDRFTKNLMSQVGREVGRVVTRGIMGMLK
                     GK"
     gene            3074..3682
                     /locus_tag="U1396_001659"
     CDS             3074..3682
                     /locus_tag="U1396_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEM5342832.1"
                     /translation="MTDQLQALLKDYQPQPLGEKRSYAVFLPLVWSDNQWQVLYEIRS
                     ESISQPGEVSFPGGGIDEGETAEEAAIREVIEELDIQQEQIELLGEIDYLVFGRTTIR
                     CFVGRLHLDWQTLQPNDEVARFFTVPLETLLKTAPVYYQLDSQIVPDCDFPFERLRGG
                     VDYPFSHHKRSVPFYENLPENIWGMTAQFTHRFTEIVKNNLS"
     gene            3971..5837
                     /locus_tag="U1396_001660"
                     /pseudo
     CDS             3971..5837
                     /locus_tag="U1396_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775427.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
BASE COUNT         1805 a         1187 c         1345 g         1580 t
ORIGIN      
        1 gtaggaatcg tttttcgatg gctggctact gtcatataca tcatgttgga tgttccaagt
       61 tcggcattca tatataaaat catgagtagc ccccaaccaa acatcaaccc atagctaaat
      121 ttcccgagtc cttctgcgac atggttgagt ttgtctgctg tataaagaga aatgacaatc
      181 cccaatccta aataaagact ggctagtatt gatcgtacag cgtaggcaga aaaactgtgt
      241 tcaaacaaat ctgctttttt cttgatactc ttttcaagtg tatacattaa tgtctcttgg
      301 ttagctccca tcctaatctc cttactgaat ctactacttt ttcgagtaaa cgttttcttt
      361 ttatcgaatg gctttacttt gtttattata cttgataaaa tggttgttgt ccaaaaaaaa
      421 ttcaactttt gaaaggaaat ataagaaaaa tatggatgtt acatggacag tgaaatatat
      481 cactgaattt ttagcgactg cactccttat tatcattggt aatggtacag ttgcaaacgt
      541 tgatttaaaa ggcacaaagg gaaacaactc tggttggatt ctcattgcga ttggctatgg
      601 tttggcagtt atgatgccag cattgatgtt tggtaacgtt tctggtaacc atatcaaccc
      661 agccttcaca cttggtttgg ctgtttcagg tctcttccct tgggctcacg ttgctcaata
      721 cattgttgcc caattgttag gtgcaatgtt tggtcagtta gtggttgtag cagtgtataa
      781 accttacttc ttgaaaactg aaaattctaa ccatattctt ggctcattct caactatcag
      841 tgcgcttgat aacggaacga aagaaagccg taaagctgcg acaactaatg gtttcttgaa
      901 tgagttcgtt ggttcatttg tattgttctt cggtgccctt gctttgacca aacatttctt
      961 tggttcagag ttggttggta aattgattga acagggctat gataaaacag tcgctgagac
     1021 aatgactgct ccatatactt caggttcaat tgcagttgct cacttaggca ttggtttcct
     1081 agttatggct cttgttgccg ctcttggtgg tccaacaggt cctggtctta acccagcgcg
     1141 tgaccttggt ccacgtatcg ttcatgccct tcttccaaaa tctgttcttg gtgaaaacaa
     1201 ggctgattca aaatggtggt atgcttgggt tggtgtatgt gctccaatta tcgcatcaat
     1261 tgccgctgtt gcacttttca aattcttgta tctataatat agagaacccg attcgtcggg
     1321 tttttctttt tgttttatgg atattgaggt gattcggttg tctgctctgc tattttccta
     1381 aaagttatgc tacaataaag ttagaaaaaa tcggaaatga ggctagaata tgtcagatgt
     1441 tattgctttt ggctatggaa gcagtcgagc ggagatgcag ctcaagcggc tcaatcgtca
     1501 tggaatcatc gcaggtgcga caggtacagg gaagaccgtg accttaaagg tcttggcaga
     1561 gcagttgagt gatgcgggaa ttcccgtctt tctatcggac atcaagggtg atttgaatag
     1621 tttggttgcg gccaatacca aggagattga tcctagtcgt ctagagaaga ctcattatct
     1681 tgactatagc ccagtcggtt atccagttga gttgtgggat gtcttggggg aaaatgggac
     1741 tcctgtccgt atgaccattt cagagctggg tcctgtccta ctgacacgtt tgttgggctt
     1801 gaatgatact caggagtcca tcctgaatat tgttttcagc gtggcagatg agcgtgggct
     1861 tctcttgatt gatttgatgg acctgcgggc tatgctcaat tttgtggctg aaaatgcggc
     1921 agagctgagc cagtattatg gaaatattcc agctcgttcg gttggtgcca tcttgcgtag
     1981 tctggttgtt ttggagcaac aaggtggtaa gattttcttc ggtgagccaa gccttgatat
     2041 tgctgatttg atgcgtacag cagaagatgg ccgtggggtt atcaacgttc tccaagctac
     2101 tcagctattt aatcagccaa cattgtattc aacggttctt ctcagtctct tatcagaact
     2161 ctatgaagtc ttgcctgagg tgggcgattt ggacaagcct aagatggtct tcttctttga
     2221 tgaggctcat gttctcttca aagatactcc aaaagttctt cttgaaaaga ttgaattgat
     2281 tgttcgtttg attcgttcaa aaggtgtagg tgtctttttt gtaacgcaga atccaacgga
     2341 tattcctgat agcgtggcag cccagttagg aaatcgtatc cagcatggtc ttcgcgcctt
     2401 tacaccaaaa gagctcaaga cagttgcgac tgttgccgaa accttccgtc aagaaggtga
     2461 tgaggatttg gtcaaggtca ttcaggaatt gcaggtaggt gaagcggttg tgtctactct
     2521 gcaagttgac gggacaccaa gctttgcgga tcgagtattg atttatcctc caaagagtat
     2581 gctgggaacg gtggagccaa gtgccctctt gtcagttatc aacaactctc ctttgatgga
     2641 aaaatatgct gacgcggtca atcgtgagtc agcacatgag cagattttag ccatgacaga
     2701 ggctaaagaa gccgaactca ttaaaaaagc agagcaggcc gaagcggaaa aacaggcaga
     2761 aaaagaagct aaggcagccg caaaaatgga agagaaagcc cagaaagaag cagctaaagc
     2821 tgcacaaaaa actagtcagc cagccagtcg caaaacagat tccatgatgg atcgctttac
     2881 caagaacctg atgagtcagg tcggacggga agttgggcgc gtggtaactc gtggcattat
     2941 gggcatgtta aaagggaaat aaacgactag actgagaagg aaacttctca gttttttatc
     3001 tagacaaagt tcttgccaga tgccacaaaa ttcgttaaaa taaacgcaaa tcactagtta
     3061 gtaaggagtt gccatgactg atcaattgca ggcattattg aaagactatc agccccagcc
     3121 attgggtgaa aaacgttctt atgcagtttt cttgccctta gtctggtcag acaatcagtg
     3181 gcaggtctta tatgagattc ggagcgagtc catttctcaa ccaggagaag tttcctttcc
     3241 aggtggcgga attgatgaag gcgagacagc agaagaagct gccattcgtg aggttatcga
     3301 agaacttgac attcaacagg aacaaattga gttgctgggg gaaatcgact atctagtttt
     3361 tggccgcacg acgattcgct gttttgtcgg gcgacttcac ttggactggc agacccttca
     3421 acccaatgat gaagtagctc gattcttcac cgttccactg gaaaccttgc tgaaaacggc
     3481 ccctgtctat tatcaactgg attcacagat tgtcccagat tgtgactttc cctttgaacg
     3541 tttgagaggt ggggttgact atcctttcag tcatcacaaa cgatccgttc cattttatga
     3601 aaatctacca gaaaatatct ggggaatgac cgcccaattt acccatcgtt ttacggaaat
     3661 agtgaaaaat aatctatcgt gaaatgatag gttatttttt tggaggaaaa accagccttt
     3721 gcgatatgta tcagcgaaaa aatggagaca aagctcagcg tgagcaatgt acagaaaaac
     3781 acgcaaaaaa cagattcgta gcagataaaa gatagctatg gctggtatac ttggtacgat
     3841 ccatatttga agtaccatca tctatccagg aatgcgacaa catgcatgta aacgcattca
     3901 gtggattgtt atcatttcca gtaaatgagt gggaaaatgt ataaatctat attttaaaaa
     3961 ggagccaatt atgagcaagc agaaagttgt atccagttta ttattaagca cggtcgtatt
     4021 agggggatta gccttttatt caacgacaac ggttaaggca gaatcgctag aaacagatgt
     4081 tacatcagtt agttcaggtg atgttgttga gaaaccggta gtatcagatg gaggggaaag
     4141 cgacttttta gctgaagaag aggagcttga agacgatgag cctttggaag aagaattaaa
     4201 tgagaaagcc gaagaggtta cggagccatc ttcacctgaa gcacttcttc aacctcgtgc
     4261 ggtgatgagc gattctggta gtaatgatac ggaagaaatt ccagtgaatg atgagccttc
     4321 agattacaca gtagaaaaag tggtgaagca aaagccagaa ctcattcaaa catcaaatgt
     4381 ggattctaaa gcgacgggcg atgatcaggc taagattagg gcgtcagtat ctatagagtc
     4441 tttgcaggca gaaagaaata agattagatg gcaagtgact tttgacacag gggcatggtc
     4501 ttttgataaa tctcctggag gtttttattt tgttcttcca gaaggcttgg aattgacaga
     4561 aattattgat aatgaccacg gtagatcgaa tataattaat gatttcccta cagatattaa
     4621 tgatccgaaa aatgacggtg gacaaaaata ccgtttcttt aataaagaag aaaacagcga
     4681 tagctttaat aatcaatggg gggtggtcag cagggcaagc tcctaatgaa atgattaata
     4741 actggaaaac aggaaatcgt ttttctaaga tttactttat agataaaata acagatacta
     4801 gacaggtaac ctatacttta actgctagtg tgactgattc aaatcaaaaa tcattcccac
     4861 ttgtagcagt gatgaagagc ttttggtata caaactcgca aggaacgcag attacttcat
     4921 tagctggtcg tgagattacc cttgagaaag aaaaacctct accacctaaa gagactccag
     4981 cgccagaagc tccgtcaact cctgaaaagc aaccggaatc tccaaaggaa gatcctaaga
     5041 aggaagatac tccggaggtt tcaccaaaac cagaagcgcc aacaccagac gcaccaaaac
     5101 aggacgttcc agaaactccg gataagcaac cagaagaaat gcctaaagtt cctgaagcac
     5161 cgaaggaaga cgctccagct ccagcgccat cgactccatc agtaccagaa gaaaaaccaa
     5221 aggaagattc gaaaccagaa gtgccatcag caccggaagc tccaaaggac gctccatcaa
     5281 ttccggaaaa acaaccagac gctccacaag ttccattgac tcctgaagaa aaaccacaag
     5341 taccggaagc accaaagcaa gacgatgtcc aaccagacgc tccacaagta ccggaagcac
     5401 cacaacaaga cgacgtccaa ccagacgctc cacaagtacc ggaagcaccg aaggaagaag
     5461 ttccaacccc accggctcca tcagtaccag aagagcaacc aaaagaaact ccaacaccag
     5521 aagttccaaa acaagacgat gttcaaccgg aagcaccaaa atctgataaa gtagaaactg
     5581 acaaacaaat gccagaaact aagcaaccag atatgaagca accgaaggca gataaaccag
     5641 aagcagagaa agctcaaatg ccacggacag agggtatgaa gcctgaatct aaggcttcaa
     5701 tgatgccaaa agcagaggca ccaaaagcaa ctttgccaaa tacaggcgaa gcaagtagcg
     5761 caataggctg gctaggtggt gctttagcca ctcttgccac aggcttgtat ctattcaaaa
     5821 acaaaaaaga agaatagtca ttattgaata agatatgaga acttccctct tctaagttca
     5881 taaaagactc cagatcatcg ctgtagaagc cttggtt
//
LOCUS       DASGBY010000118         5841 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.118, whole genome shotgun sequence.
ACCESSION   DASGBY010000118 DASGBY010000000
VERSION     DASGBY010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5841
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.118"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            48..968
                     /locus_tag="U1396_001661"
     CDS             48..968
                     /locus_tag="U1396_001661"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009568566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HEM5342833.1"
                     /translation="MKNEFLNFEQIDRATWQQLHRKTTIPLSQSELNSIKSFNDRIQL
                     HEVSDIYLPLVNLIHIYRKARKDLNFTKSLFLQKTIKPQPFIIGVSGSVAVGKSTTSR
                     LLQILIARTFKHAKVELVTTDGFLHPNAVLEERQLLNKKGFPESYDMEKLIDFLDKIK
                     NGYDCQIPVYSHEIYDIVPNKTQEIKSPDFLIVEGINVFQNPQNQRLYVSDYFDLSIY
                     VDADVEHIETWYLERFQKLLTLAKNDPNNYYHRFTQMTYPEILSIAQNTWKNINLANL
                     EKFIEPTRNRADIILHKAENHEIDKIYLKK"
     gene            1027..1275
                     /locus_tag="U1396_001662"
     CDS             1027..1275
                     /locus_tag="U1396_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEM5342834.1"
                     /translation="MEVKPLANIKSAIKRAELNVKQNEKNSAQKSAMRTAIKAFEANP
                     SEELFRAASSAIDKAETKGLIHKNKASRDKARLASKLA"
     gene            complement(1537..2766)
                     /locus_tag="U1396_001663"
     CDS             complement(1537..2766)
                     /locus_tag="U1396_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM5342835.1"
                     /translation="MRKVSRGVLTILLSATVLSACSGGGQELSERLEAAKIEFSKEKK
                     QLEAELTALKEEVQGNFYYQQLDTDKERRVYLQFVNGLSKRMQVIDIDSVNDEIYSRV
                     YFSVAHDYPEFYWLTDEAAMAGGIDILDLEEPVYPSDLSPTQNKIEDEVNKILAQTPK
                     GSDYEKVKYFYEVIIKQTDYDLEALQTKSVTWRSQGITSVLLDKKSVCAGYSRTFQYL
                     CKKAGIDCIYVTGIAKNGQNGEFGHAWNLVKINGQYYGVDTTWGDPVFDQAISGEAHT
                     DISYDYLCVPDEILERSRIADSDLLDYWGEEQYYEPRVLVYPKCTDNSLNYYVQKGVY
                     FTSFDEAAVLQSITDQRLQGTNKVVLQFGTAEAMQQMITLASTENNAIFQALGDVGEY
                     QYYYNDQTYTFELADWF"
     gene            complement(3090..4469)
                     /locus_tag="U1396_001664"
     CDS             complement(3090..4469)
                     /locus_tag="U1396_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM5342836.1"
                     /translation="MPKRFKKLMYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMY
                     QNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQDSPTGEETTSSSSDSTPVPKNQK
                     NTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
                     SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYESTVAIVMVSAWLIS
                     ILASIYLSNLSMRPILISYQKQKDFVENASHELRTPLAVLQNRLESLFRHPETTILES
                     SESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFDEIFANYLMIAEENG
                     KTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGTIQMAANIKDKLVCFTVID
                     NGLGISDADKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKG
                     TIFEVRLPK"
     gene            complement(4462..5133)
                     /locus_tag="U1396_001665"
     CDS             complement(4462..5133)
                     /locus_tag="U1396_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5342837.1"
                     /translation="MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGVYEAETGV
                     YDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKP
                     FYLEELKMRIQALLKRAGKFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVY
                     FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGY
                     ILKNA"
     gene            complement(5327..5707)
                     /locus_tag="U1396_001666"
     CDS             complement(5327..5707)
                     /locus_tag="U1396_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342838.1"
                     /translation="MSFINQFKSQSKTVLAAVAISAATLGFAGGMSISKSSTGVSTQS
                     QASLAQNSSAAMNGQGAPQGMPPGKGGPSQGMPPGQGTPPHDATSGATQSNSSTSSDE
                     VNALKKKNQEIKAQISGDSSSSNQ"
BASE COUNT         1846 a         1188 c          958 g         1849 t
ORIGIN      
        1 taaaatgaaa tcgatattga aacgcttacc tataggaaga attatgtatg aaaaatgaat
       61 ttttaaattt tgaacaaatt gaccgagcca cttggcaaca actacatcgt aagactacca
      121 ttccacttag tcaaagcgaa ctaaattcta ttaaaagttt taacgaccgc atccaattac
      181 atgaggtttc tgacatctat cttcctttgg ttaatcttat ccatatctat cggaaagcac
      241 gcaaagacct aaattttacg aagagtttat ttctacagaa gactatcaag ccacaaccat
      301 ttatcattgg cgtttctgga agtgttgctg tcggcaaatc aacaactagt agattgctgc
      361 aaattcttat cgctcggaca tttaaacacg ccaaggttga attagtaaca acagatggtt
      421 ttctccatcc aaatgcggtc ttagaagaac ggcaactgtt aaataaaaaa ggttttcctg
      481 aatcctatga catggagaaa ttgattgatt tccttgataa gataaaaaac ggctacgact
      541 gccaaattcc tgtctattca catgaaatct atgatattgt ccccaacaaa actcaggaaa
      601 ttaaatctcc agatttcttg attgttgaag gaatcaatgt atttcaaaat ccacaaaacc
      661 agcgcctcta tgtcagtgac tattttgacc tatctatata cgttgacgct gatgtggagc
      721 atattgaaac ctggtacttg gagcgattcc aaaaattatt gacattggca aaaaatgacc
      781 ctaacaacta ttaccatcgt tttacccaga tgacgtaccc tgagattcta tctattgccc
      841 agaatacttg gaaaaatatt aatctagcta acttagaaaa attcattgaa ccaaccagaa
      901 accgtgctga tattattctt cataaggccg aaaaccatga gattgataaa atttatctaa
      961 aaaaataaat ttcacttgtc aaaaatactc ttttcagata taatggtata gttagtacaa
     1021 gaaagggtgg aggtgaaacc attggcaaac attaagtcag ctatcaaacg cgctgaattg
     1081 aacgttaaac aaaacgagaa aaactcagca caaaaatcag ctatgcgtac tgcaatcaaa
     1141 gcatttgaag ctaacccatc tgaagagctt ttccgtgctg ctagttcagc aatcgataaa
     1201 gcagaaacta aaggtttgat tcacaaaaac aaagcaagcc gcgataaagc acgtcttgca
     1261 tcaaaacttg cttaattaaa aaagaaacct ttgggtttcc tttttttatt ttttccatca
     1321 taaggaggcg ggacaaagtg gatcagtttt cccgcgatga ctaacatcat taactcgtca
     1381 accacaaagc cctcactatg attatacacc tagtgagggc tttgtggttg ttttcattat
     1441 tctgtgggtg agggcggagc caccatggat gtctttcccg ctccctattt tttattatta
     1501 gggaagaaca cgctcctaga gattcaaact aattccttaa aaccaatctg ccagttcaaa
     1561 tgtataggtt tggtcattat aatagtactg atactctcct acatcgccca aagcctgaaa
     1621 aatagcatta ttttcagtag aggccaatgt aatcatttgt tgcattgctt ctgctgttcc
     1681 gaattgcaag actactttat tcgtaccttg tagccgctgg tcagtgatgg actgtaaaac
     1741 tgcagcttca tcaaagcttg tgaaataaac tcccttttga acatagtaat tcaatgaatt
     1801 atctgtacac tttggataga ccaatactct aggttcgtaa tattgttctt ctccccagta
     1861 gtcgagtagg tcgctatcag caattctact tctctctaat atttcatcag ggacacatag
     1921 ataatcgtat gaaatatctg tatgcgcttc tccacttata gcttgatcaa aaactggatc
     1981 tccccaagtc gtatcaacac catagtattg tccatttatc ttgactagat tccaagcatg
     2041 cccaaactca ccgttttgcc cattttttgc aatccctgtg acatagatac aatcaatgcc
     2101 tgctttttta catagatatt ggaaggtgcg actatagcca gcacaaacgg atttcttatc
     2161 taatagcaca ctggtaattc cttgacttct ccacgtgaca gatttggtct gcagggcttc
     2221 aaggtcgtaa tccgtttgct ttataatcac ctcgtaaaaa tatttaactt tctcatagtc
     2281 cgaccctttt ggtgtctgag caagtatctt attcacttca tcttctattt tattttgtgt
     2341 cggagataaa tcactcggat acaccggctc ttctaaatcc aatatatcaa ttccaccagc
     2401 cattgctgct tcatctgtta gccagtaaaa ttctggataa tcatgggcga cagaaaaata
     2461 tacgcgcgaa tatatttcat cattaacaga atcaatatcg atcacttgca tccgcttgct
     2521 gagtccatta acaaattgga gatagacacg acgttcctta tcagtatcca attgttggta
     2581 gtaaaaattt ccttgaacct cttcttttaa tgctgttaat tctgcttcta gttgcttttt
     2641 ttctttagaa aattcaattt tagctgcttc caaacgttca ctcagctctt gtcctcctcc
     2701 tgaacaagca gaaaggactg tcgccgataa taatatggtt aaaacgccac gagaaacttt
     2761 cctcatattt acctccattc ttgtttaagt ataacataat taggaggcat ctgacaaact
     2821 acacaaaaca aaaagggagt ggaaagaatt caatagatcg aaaaagaatt cccctcactt
     2881 ccaaacattt aggttcgatt ttctatggtc actttcttat ttttaggtga ccagctgaaa
     2941 cagttcccca aacctttgga ggctggagat agagcgaaca gagttcgcta caaaactatc
     3001 tgggagacag ttggaagttg gaaatagagc gaactttgag aagaaaggct ggatttttta
     3061 cccagcctct aatcttgatg aatggtcagt tatttgggta aacgtacctc aaaaatagtt
     3121 cctttcggtt ggttatctct cacagaaatc tcaccatcta aattcttaat aatttgttga
     3181 gctaaagata aacctaaacc aaatccacct ttttgacgtg ttctagcctt gtcaactcgg
     3241 taaaagcgat caaagatttt ctttttatcg gcatcgctga ttcccaaacc attgtcaata
     3301 actgtaaaac aaactagttt atccttgata ttagctgcca tttgaattgt cccatcatca
     3361 tcggtatact tcatagcgtt gtcaaacaaa atggtgagca actgtttaat caaaactttg
     3421 tctgttcgaa ttggctgatg aatcaaatta ttaactgtta gagtttttcc attttcttcg
     3481 gcaatcataa ggtaattagc aaagatttca tcaaaatagt tgggttggac atcgatcata
     3541 tcgactttta agccatcatc acgacgagcc aaattaagta aatttgttgt caatagtcgc
     3601 atatttcgaa cttcttctaa actagatccg atgctttcac tactttccaa aatagttgtc
     3661 tcgggatgac gaaatagact ttccaggcga ttttgaagaa ctgccaacgg tgtgcgtaac
     3721 tcatgactag cattttcaac gaagtctttt tgtttttgat aactaattag gattggacgc
     3781 atgctaagat tcgataggta aatacttgct agtatagaaa tcaaccaagc tgataccata
     3841 acaatagcaa ctgtcgattc atagctctca atggaagatt taatttggct gacattcacc
     3901 aaaattgtcg catattttat atcataggac gaataatacc ctagttcatc tgtagccagc
     3961 ccaatcgtta tatagcgata atcttcagac ataccaaaac ttgattcaac cgtagtttcc
     4021 ttaatttcac ccaatttttc cttgtctaat gataggtcgg ccaaaccagt aaaagtatct
     4081 ggattaatca tctctccact tttactatag agtaaaacat gagtattggc acctaacctc
     4141 agctgatctc cagctctagt atttttttga tttttaggaa caggcgtgct atctgaacta
     4201 gagctcgtag tttcttcacc agttggacta tcttgaagga taaatacaga attgggctca
     4261 taggttcttg cgattgcaaa accaacagcc agcgctggtt ctttcttaat gcgtttcaag
     4321 gtgttatctg aattttggta catagttgaa cgcattaatt gaaaaatgat ggctgtcatt
     4381 aaaccaaaaa tcagagtaaa tactgcaaaa taacggataa agaaagaaaa tttatccgtg
     4441 tacattaatt ttttaaatcg cttaggcatt ttttagaatg tatccaacac tacgcagggt
     4501 ttgaagattt tccccaaagg tcgttccttt caactttttc ctaattttag aaacatatac
     4561 ttctactact gaaattgtag tatcactgtc aaagccccaa atacggtcaa aaatttgtgt
     4621 ttttggcaaa ataacatttt gattttgcaa gaaataaact agtagatcaa attcttttcc
     4681 tagcagttca acttcttcgc catttaccat cgtcatattt gtagataggt caactgtcac
     4741 atctccaaag gttagtgtgt tttcattaaa cttacccgct cgttttaata gagcttgaat
     4801 tcgcatcttc aattcttcta aataaaacgg ttttgtcaaa tagtcatcag cccccaattc
     4861 aaaaccatgg cctttatcct ctagactttc cttggctgtt gtaatcagaa caggtgtcgt
     4921 aacacctttt tcacgtaatt ctttcaagac ttggaagcca tctttttcag gcaacatcaa
     4981 atccaaaaga atcaaatcat aaacgcctgt ttccgcctca taaacgccct cttcaccatc
     5041 aaaaacctgc ataacatccg caaaatcatc taagaaatcg aaaacagaat ttgatagact
     5101 taaatcatct tccactaaca atattttaat catcatacac ttccttacgt ttcggtttaa
     5161 taaacaaacc aaagacctgg gacaggtcac ggtctttaag agaaatggtt agataaagta
     5221 ctactatgac catctgaaaa atgaatgata aggtagtctt tatctaacta tttattgata
     5281 cgagttcatt atatcatgga ataagtaaaa atcgaaatct caatatttat tgattagaag
     5341 aactactatc tcctgaaatt tgagctttaa tttcttgatt cttctttttt aaagcattca
     5401 cttcatcaga agaagtactc gagtttgact gagttgctcc acttgttgca tcatgagggg
     5461 gtgtaccttg tccaggtggc ataccttggc taggacctcc tttacctggt ggcatgcctt
     5521 ggggagctcc ttgtccattc attgctgcag aactattttg cgccaaactt gcctgacttt
     5581 gtgttgaaac tcctgttgag cttttcgaaa tactcattcc ccctgcaaag cccaaggtag
     5641 cagctgaaat agcaacagca gctagtactg tttttgactg tgacttaaat tgattaataa
     5701 atgacatgaa attccccttt tcaatagaat attatcagaa tgagacctgt taaataactc
     5761 ctcttcacct gatgataata gtatagtatt gaaaacttaa aacaagctaa agaaattcag
     5821 cattttttat aaaagtccat t
//
LOCUS       DASGBY010000119         5787 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.119, whole genome shotgun sequence.
ACCESSION   DASGBY010000119 DASGBY010000000
VERSION     DASGBY010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5787
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.119"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(3..971)
                     /locus_tag="U1396_001667"
     CDS             complement(3..971)
                     /locus_tag="U1396_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM5342839.1"
                     /translation="MSLSLRTIKLIFATVLAIYLATVLGLSYTTAAGIIAILSVLDTR
                     KSSFKMARNRLFSTLLALTIAVLTFALFGFGIWTLGIYLALYVPLAYRFNWEAGIAPS
                     TVLVTHLLLEQDISLIFLGNELALFLIGAGLALLFNLYMPSQEKKIQAYHDQVEDLLK
                     QILLRFEAFLLNGDGRNEAELITQLDQTLEQALKVVYLDRHNQLFQQTNYQVHYFEMR
                     AAQNKILRTMAGNINKCLLEGRENVILSSLFERAAQQLSRENSAKELLLDIELFHATF
                     RERPLPQTREEFETRATLFQLLHDMEAFIRLKVDFYEVYKDEKDPS"
     gene            complement(1046..1435)
                     /locus_tag="U1396_001668"
     CDS             complement(1046..1435)
                     /locus_tag="U1396_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1761 domain-containing protein"
                     /protein_id="HEM5342840.1"
                     /translation="MTLIFGIVAGLIAFAIGGLWYGLIFRDAWIKASGIDMAKVEADR
                     QAGKNGQKEMVISLVIEVLTAVVAIFFIKTLGVSPLHAAGGMGVIAVLASLKNYVFEQ
                     RPINLILINESYKLVCYLVVGILALFA"
     gene            1573..2301
                     /gene="rlmB"
                     /locus_tag="U1396_001669"
     CDS             1573..2301
                     /gene="rlmB"
                     /locus_tag="U1396_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEM5342841.1"
                     /translation="MEHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA
                     EKKVSISWTPKKTLSDMTEGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDG
                     LTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQT
                     LDKLKEAGFWVFGTDMNGTPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMK
                     GHVQSLNASVAAAVLMYEVFRKKI"
     gene            2302..2823
                     /locus_tag="U1396_001670"
     CDS             2302..2823
                     /locus_tag="U1396_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEM5342842.1"
                     /translation="MKEKVLIVDGYNMIAFWQATKQDFKKGDLDAARTTLLRTLSHYA
                     AFEQIEVICVFDAHHVPGLRQQYDEFKVSVIFTEEEETADSYIERLSAQLNSDRRKQV
                     SVATSDLNEQWVVFSQGALRVSARELEERTRIIKKDLDKFVDQVELYTPRLNPWSDGN
                     FQALKEMMEEMKE"
     gene            2820..3683
                     /locus_tag="U1396_001671"
     CDS             2820..3683
                     /locus_tag="U1396_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5342843.1"
                     /translation="MTFTIVTDSTSDLPISWVQENDVTVLGLTINLDGVTYETVGENR
                     LTSADLLEKMASGSQPTTSQVNVGQFEEVFEEAAKEGHEVLYLAFSAALSGTYQSAVI
                     AREMVVDQYPDAVITIVDTKAATIGEGYLVMKAVEARAAGKTLAETKAIVEDLVPRLR
                     TYLLVDDLNHLVRGGRLSKAAALIGGLVNIKPLLALNAEGKLEAIAKIRGRKKGIKEM
                     LNLTLDNLDHSTVMVAYTGDIEAAEGVKSSLLEDDRISDVLLTELGPVIATHTGTGVL
                     AILSIGTAMRA"
     gene            4147..4593
                     /gene="rplM"
                     /locus_tag="U1396_001672"
     CDS             4147..4593
                     /gene="rplM"
                     /locus_tag="U1396_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003083327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEM5342844.1"
                     /translation="MNKTTFMAKPGQVERKWYVVDATDVPLGRLSAVVASVLRGKNKP
                     TFTPHTDTGDFVIVINAEKVKLTGKKATDKIYYTHSNHPGGLKSISAGELRSKNAVRL
                     IEKSVKGMLPHNTLGRAQGMKLKVFVGGEHTHAAQQPEVLDISGLI"
     gene            4613..5005
                     /gene="rpsI"
                     /locus_tag="U1396_001673"
     CDS             4613..5005
                     /gene="rpsI"
                     /locus_tag="U1396_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEM5342845.1"
                     /translation="MAQAQYTGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADL
                     RLVINQPFAVTSTQGSYDVFVNVNGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAG
                     LLTRDARMVERKKPGLKKARKASQFSKR"
     gene            complement(5114..>5787)
                     /locus_tag="U1396_001674"
     CDS             complement(5114..>5787)
                     /locus_tag="U1396_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5342846.1"
                     /translation="QLAEARRDEDLYLTQEQLQEWFSAFQDDLASGKISLKDYVLFYL
                     TFFLGDRKSESYALQWKHIDFEKSQIQLLQALDRYGDVKSTKGNKKTIFAISTDLLQL
                     LQGWKSQQKQELAKFGIITNPEQFVFTYIDTKGNINKPLHADYLNNKMKTIKKRHPKL
                     THATPHKLRHTGATLAKKAGMSLEAISEALTHSDTLTTKTYVNTSNIVPLSAGHVAYQ
                     HLKNE"
BASE COUNT         1634 a         1216 c         1427 g         1510 t
ORIGIN      
        1 tattatgacg ggtctttttc atctttatag acttcataaa aatcaacctt gaggcgaata
       61 aaggcttcca tatcatgcag gagttggaag agggtggcac gggtttcaaa ttcttccctt
      121 gtttgtggca gaggtcgctc gcggaaggtg gcatggaaga gctcgatgtc taggagcagt
      181 tccttggcgg agttttctcg actcagttgc tgggctgctc gctcgaagag gctggacagg
      241 atgacatttt ctctgccttc cagtaaacat ttgttgatat ttcctgccat ggtccgcagg
      301 attttatttt gtgcggcccg catttcaaag taatggacct ggtaattggt ttgctggaag
      361 agttggttgt ggcggtccag atagacgact ttcagagctt gctccaaggt ctgatccaac
      421 tgcgtaatca attcagcctc gtttcgtccg tctccgttaa gtagaaaggc ttcaaagcga
      481 agcagaatct gcttgagcag gtcttcgact tggtcgtggt aggcctggat tttcttttct
      541 tgcgagggca tatagaggtt aaacaggagt gccagtcctg ccccaatcag aaaaagcgcc
      601 agctcatttc ccaaaaaaat cagcgaaata tcttgctcca gcaagaggtg ggtaacgagg
      661 acggtcgagg gggcgatgcc agcctcccag ttgaaacggt aggccagggg gacgtagagg
      721 gctaggtaaa tgcccagggt ccagatgcca aagccaaaga gggcgaaggt caggacggct
      781 atggtcaggg ccaggagggt ggaaaagagg cggttgcgag ccattttgaa gctggacttg
      841 cgggtgtcga ggacgctgag aatggcgatg atgcctgccg ctgtcgtata agacaggccc
      901 agtacggtcg ctaggtaaat agccagaacg gtggcaaata tcagtttgat ggtgcggagg
      961 gagagggaca tgagggctcc tttggtttta gtctatttct attgtatcat aaaataaaaa
     1021 cctcctaagg ataggaggga attacttatg caaatagagc cagaataccg actactaggt
     1081 agcagactag tttgtagctt tcgttgatga ggataaggtt gatagggcgt tgctcaaaga
     1141 cgtagttttt caatgaagcg aggaccgcaa ttacgcccat gccaccagct gcatgaagtg
     1201 gtgaaacacc gagggtcttg atgaagaaaa tagccacaac agcagtcagt acttcaatga
     1261 caagggaaat caccatttcc ttctgtccat ttttgccagc ctgacgatct gcttctacct
     1321 tagccatgtc aatgcctgaa gccttgatcc aagcatcgcg gaaaatcaaa ccataccaca
     1381 aaccaccaat agcaaaggca atcagccccg ccacaattcc aaaaataagt gtcataaaat
     1441 ctcctttttc gattccgttt gtacggacaa attgatagaa ctaaggataa catagattgt
     1501 ataggcggtc aagtttttca gctggaacac agtgagcgcc tattttcagt caacctatgc
     1561 tataataaaa ccatggaaca taatgatatc gtatatggcg tacatgctgt agtggagagt
     1621 ttggaggcca acaccggcaa caaactttac attcaggatg atttgcgcgg aaaaaatgta
     1681 gaaaaaatca aggcgctggc ggcagagaag aaggtgtcga tttcttggac gcccaagaag
     1741 accctgtctg acatgacaga aggtgccgtt caccaaggct ttgtcctgcg ggtctctgag
     1801 ttcgcctatg cggacctgtc ggtgattttg gaaaaggcag agcaggaaga caatcccctc
     1861 attctcatct tggacggtct gacagacccc cacaatttcg gctcgatttt gcggaccgca
     1921 gatgccactc aggtagctgg catcatcatt cccaagcacc gagcagttgg tgtgacgccc
     1981 gttgtggcaa agacctcaac aggtgcggtg gcccatgtcc caattgcccg agtgaccaat
     2041 cttagccaaa ccctcgacaa actcaaggag gctggtttct gggtatttgg taccgatatg
     2101 aacggaaccc caagccacaa gtggaatacg gctggcaagc tagctctcat tatcggcaac
     2161 gaaggcaagg gcatctccag caatatcaaa aagcaggtgg atgagatgat taccattcct
     2221 atgaagggcc atgtccaatc tctcaatgct agcgtagcag cagctgtact gatgtacgaa
     2281 gtatttcgga agaaaatcta aatgaaagaa aaagttctca ttgtagatgg ctacaacatg
     2341 attgcctttt ggcaggccac caagcaagat tttaaaaagg gagacttgga tgcggccaga
     2401 acgaccttgc ttcgcacctt gtctcactac gcagcctttg aacagattga ggtaatttgt
     2461 gtctttgatg cccaccatgt gccaggtctt cgccagcagt atgacgaatt caaggtatcg
     2521 gtcattttta cagaggagga agagacggca gatagttata tcgagcggct cagcgcccag
     2581 ctcaatagtg accgccgcaa gcaggtttcc gtcgcaacca gcgacctcaa cgaacaatgg
     2641 gtggtctttt cacaaggggc cttacgggtt tcggcgcgtg aattagagga gagaaccagg
     2701 attatcaaga aggacttgga caagtttgtg gaccaggtag aactctacac cccacgactc
     2761 aatccctggt cagatgggaa ttttcaagcc ttaaaagaaa tgatggagga aatgaaagag
     2821 tgacatttac aatcgtaacc gattcgacat cggatttgcc aatcagctgg gtccaagaaa
     2881 acgatgtgac cgtgcttggt ttgaccatta acctagacgg cgtgacttat gaaacagtcg
     2941 gtgaaaaccg cttgacctca gcagatttac tggagaaaat ggcttctggc agccaaccta
     3001 cgaccagtca ggtcaatgtt ggtcagtttg aagaagtttt tgaagaggca gccaaggaag
     3061 gtcatgaggt actttatctc gctttctcag cagctctttc agggacctac cagagtgcag
     3121 tcattgcacg agagatggta gtggaccaat atccagatgc agtcatcacc atcgttgata
     3181 caaaggcagc gaccattgga gaaggctact tagtcatgaa agccgttgag gcacgtgctg
     3241 caggtaagac tctggcagaa acaaaggcaa tcgtagaaga tttggtgcct cgcttacgga
     3301 cttacctctt ggtcgacgac cttaatcatt tggtgcgagg tggacgcctg tctaaagcgg
     3361 cagccctcat cggtggattg gtcaatatca agcctctcct tgcactcaat gcggaaggga
     3421 agttagaagc cattgccaaa atccgtggtc gtaaaaaagg aattaaggaa atgctgaatc
     3481 tgaccttgga taacttggat cattctacgg tcatggtggc ctatacgggt gatattgagg
     3541 cggcagaggg cgtcaaatct agtttattgg aagacgaccg tatttctgat gttctattga
     3601 cagaattagg accagttatt gccactcata cagggactgg agtcttagct attttatcaa
     3661 ttgggacagc aatgagagcc tagattctaa gggatatttc ttgtaaagat gtgtctcttt
     3721 tgtacgatga cgacttatgt agcatagggt aatcaaaagg agatacgata atgctcattg
     3781 tcaagttgtt ccgaccagaa gccttggatg gctgaaactg gtgttttaca ggtcttctgg
     3841 tctatacggt ggatgaattg gtcttggaag aatttgataa aacctttcct tataaggaga
     3901 agctggtctt gcctggacaa ctagggcagt agggaaagta aacctgataa ggctttcatt
     3961 ctcagcagct ctgctatctt tcaaaaaata aaaaaagtaa agtaaaatag cttgacggag
     4021 actagtagat ttgataaaat ggtagacggt attgtttacc ccatttgaaa ggccccggaa
     4081 ccttccaaat acccgcggac cggaacatcc gcccagtaaa caaaaacgat tcgtatagga
     4141 gaaatcatga acaaaacaac atttatggct aaaccaggcc aagttgaacg taaatggtat
     4201 gtagtagacg ctactgatgt acctcttgga cgcctttcag cagtagttgc tagcgttctt
     4261 cgcggtaaaa acaaaccaac tttcacacct cacactgata ctggtgactt cgttatcgtt
     4321 atcaacgctg agaaagtgaa attgactggt aaaaaagcaa ctgataagat ttattacact
     4381 cactcaaacc acccaggcgg attgaaatca atctcagctg gtgaattgcg ttctaaaaac
     4441 gctgttcgtt tgattgaaaa atcagttaaa ggtatgcttc cacacaacac acttggtcgt
     4501 gcacaaggca tgaaattgaa agtgtttgtg ggtggcgagc acactcacgc tgcacaacaa
     4561 ccagaagtac ttgatatttc aggtcttatc taagggaaag gacgtaatct aaatggcaca
     4621 agcacaatac acaggtactg gtcgtcgtaa aaacgcggtt gcacgcgtac gtttggtccc
     4681 aggtactggt aaaatcacag taaacaaaaa agatgtagaa gagtacatcc cacacgctga
     4741 ccttcgtttg gttatcaacc aaccattcgc agtaacttca actcaaggtt catacgacgt
     4801 tttcgttaac gtgaacggtg gtggttacgg tggtcaatca ggtgcgatcc gtcacggtat
     4861 cgcgcgtgca ttgcttcaag tagacccaga cttccgcgat tcattgaaac gcgcaggcct
     4921 tcttacacgt gacgctcgta tggttgaacg taagaaacca ggtcttaaga aagcacgtaa
     4981 agctagccag ttctctaaac gttaattatc agcgatatat caacgtttca aagcactcgc
     5041 agggttttcc ctacgggtgc ttttttctgt gctttttaca aaagtttgcc ctaaaatttg
     5101 ccctaaattt gcactactca tttttaagat gttgataggc gacatgacca gcagatagag
     5161 ggacaatatt agaagtgttg acataggtct tagttgtgag agtatcacta tgagttaatg
     5221 cttctgagat agcttctaag ctcattccag ctttcttagc aagtgttgct ccagtgtgtc
     5281 ggagtttatg aggtgtggca tgtgttagct taggatgtcg cttcttaatg gtcttcattt
     5341 tattattgag atagtcagca tgcaaaggct tattgatgtt tcctttggta tcaatataag
     5401 tgaagacgaa ctgttcagga ttcgtaataa ttccaaactt tgcaagttcc tgtttttgtt
     5461 gtgatttcca accttggaga agttgaagca agtcagttga aatagcaaag attgttttct
     5521 tgttcccttt ggttgatttc acatctccat acctatctag tgcttggagt aattgaattt
     5581 gggatttttc aaaatcaatg tgtttccact gcaaagcata agattcagat tttcggtcgc
     5641 ctaaaaagaa ggtaagataa aatagaacat aatccttaag tgaaattttt ccgctagcca
     5701 aatcatcttg gaaggctgag aaccattcct gtaattgctc ttgtgttagg tagaggtctt
     5761 catctcgcct agcttctgcc aactggc
//
LOCUS       DASGBY010000120         5704 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.120, whole genome shotgun sequence.
ACCESSION   DASGBY010000120 DASGBY010000000
VERSION     DASGBY010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5704
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.120"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(672..1766)
                     /locus_tag="U1396_001675"
     CDS             complement(672..1766)
                     /locus_tag="U1396_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5342847.1"
                     /translation="MFHFTTLFIGMDVHKESFLLCYYDMMANQFKHSTKVGPNVSYIV
                     NYVNELRRLYGQDAEVLCGYEAGCLGFTLYHQLQAHGIPCIVMAPTTVMKEGSKRVKT
                     DKKDAAQLAKALAFRSYRPVHIPTAEDEQVKEYIRMRTDHKVALKKIKQQLLAFCLRH
                     DFRYTEGRNNWTQKHVRWLHSLNPKGLYAEILTEYLLTYEKLVDQIARYDARIEQLGQ
                     SDSYQEEVSQLSCFIGVKTLTALSIVTEIGDFNRFATAQHSASYLGLTPSENSSGDKE
                     RRGAITKAGNSHVRRLLIEAAQSLAKGTIGYKSKELKRRQSGNRVEVIAYADKANERL
                     RRRYRTLVLGKNKKQNVAKVAIARELSGFI"
     gene            complement(1874..2548)
                     /locus_tag="U1396_001676"
     CDS             complement(1874..2548)
                     /locus_tag="U1396_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5342848.1"
                     /translation="MLKFIKHIASLFLFFVAYQIISGFLMVGPSLQAIPEFPAQLIEN
                     MIWICAIIGIVLGIAFTIVLWKFVYSRYTIDYSVSSSWFHKIQWPILLYIAFFIFQLL
                     VPISESQNQTLVIQFVSAYPLVSFLSVVIFAPILEELIFRGLLATYFFPKMVDMKAVG
                     IYLAVTGSLFSLVHMPTTILQFLIYFTMGLNLGWLYLIRRDIRYPIALHMLNNGISYL
                     MILFLV"
     gene            complement(2558..2875)
                     /locus_tag="U1396_001677"
     CDS             complement(2558..2875)
                     /locus_tag="U1396_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342849.1"
                     /translation="MKLFLWILVGFLFFNSLSDRKKVKQLQARVKKLQKTTKGENQMS
                     VLLKELVGSKAKIRFDEEISIACEYTILAVDEEWVKISRELAEGEIETKLVRVDNIVD
                     LSF"
     gene            complement(2885..3574)
                     /locus_tag="U1396_001678"
     CDS             complement(2885..3574)
                     /locus_tag="U1396_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5342850.1"
                     /translation="MNRLGNVKDWNVVKNWKFLLVGLAVVALNVLTQLAMFALPNFDG
                     NNLLIAAVLLLLAVVLGLILTGKLGLWKGEQKWGMVANVGFVVLAFIVMFGLKIIGGQ
                     LIMLEEGYGQTTANQEIINNSGLPTLVLFLFAVFFAPVLEELLFRGILMGRVFGKDSI
                     VGLLLSSFLFGLIHNPTNIGSWVVYGGMGLVLGLAYRISGKYTNALILHSLNNLLGFL
                     LMLLMQSLGLI"
     gene            complement(3600..3806)
                     /locus_tag="U1396_001679"
     CDS             complement(3600..3806)
                     /locus_tag="U1396_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342851.1"
                     /translation="MKENKKFISVLKIVYFVGLIGLGLYAVGYIFGEWLATGQIDLSN
                     LNILLPMVLGLPALLLFKKESDKN"
     gene            complement(3828..4586)
                     /locus_tag="U1396_001680"
     CDS             complement(3828..4586)
                     /locus_tag="U1396_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3169 family protein"
                     /protein_id="HEM5342852.1"
                     /translation="MKQGKQISTKQRWMRYSAYMLISAILGGFIGFFGVLIFKFSLPS
                     YLNLDNFLIFLRIITFLIFAGTVYFGVKANQNYKLYHSISDEDEEHVDELYKKMYRNL
                     EYATISFNVAVSLTLLNLVLGFGVTFFEDGAIMYGSIFDVVFYVILLISQIFIMKLTQ
                     KIRDYKLSAFATVKEMKDFAEAMDEGEKQANYEMSFQIVFTLNQIVLPGLYLFLFVLS
                     MLLQERQITAFLVVAFLHIYINVMQVRMIRRYFK"
     gene            complement(4583..4798)
                     /locus_tag="U1396_001681"
     CDS             complement(4583..4798)
                     /locus_tag="U1396_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5342853.1"
                     /translation="MEYVLKNRLKELRARDSLNQTELAKLAEVSRQTISLIERGEYTP
                     SVVIAMRIAQIFNENVENVFQLVEVGE"
     gene            complement(4811..5377)
                     /locus_tag="U1396_001682"
     CDS             complement(4811..5377)
                     /locus_tag="U1396_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM5342854.1"
                     /translation="MEAKKKLFEVNIMKNKKFVWGLNILAVALILPFAFVFGMIGSWL
                     IANGSQYWELSVSEVWLLFPLYILLIVVHEAIHGIFFKVFCPENPVKYGFKWKSGMAY
                     ATSPGSLYNRMQMLVISLAPFVVISLGLTMLAGFGMMNTTLYFMLATMHAASCAGDFY
                     YVYLLLVKFAKENIAVEDTETGLIIYQA"
BASE COUNT         1857 a         1284 c          922 g         1641 t
ORIGIN      
        1 atatattatc caaaattggc tatactacat tcacgaaagt aaaccataca aaatgggagc
       61 gggaagtgat acgactgact ccctcactac caatttgcca cctcaaacaa tctccagaat
      121 attcgaaaac tcaaccactc cgccgagatg ttaataggaa ctcaaacatt aacattttta
      181 ccctgtgttt actactctaa ataaaaaata ccctattgca acgtgcaaca aggtaccatc
      241 tatctcaatc atatattctg taattcattt tatatagtca tatcagttta tctttgatta
      301 cttcgacgag cgaggaaacg tcgtttcctt atttccaacc tagaacagct tttaggctat
      361 tctagcaacc tgtagctttg gttacctaca ggtcaatggt tctgccgcga cgcgagtccg
      421 actctctata agcgtggatt acaattgtgc cacttagtcg tttcgtagat gactcaaacc
      481 ttgaagtcct aaactccttc aagatacttt ccattcaaac attatttcaa tccttatttc
      541 tgtccaaatt cacccagtga tttgggatag aaatagggat tcctcatcgc tctgcgatga
      601 taaaacttaa ttgtcaaaag tgtacatgaa aataagcgct aacttcaagc tattcttcct
      661 gtcatcatcc cctaaataaa accagataat tcccgtgcaa tagctacttt agcaacattt
      721 tgtttcttat tttttcctag aacaagtgtg cgataacgtc ttcttaagcg ttcattagcc
      781 ttatccgcat aagcaatcac ctccactcgg tttccacttt gtctcctttt caattctttg
      841 gatttatacc caatcgttcc cttggccaat gattgtgcag cttctatcag aagtcgtctc
      901 acatggctat tcccagcttt ggtgatagca cctcttctct ccttgtcgcc actagagttt
      961 tcgctaggag tcagcccaag ataagaagca gaatgttgag ctgtcgcaaa gcggttaaaa
     1021 tcaccgattt ctgtcacaat ggaaagagcg gttagtgttt tgacgccaat aaagcaagaa
     1081 agctgagaga cctcctcttg ataactgtcg ctttgaccca gttgctcaat tcgcgcatca
     1141 taccgtgcta tttgatctac taatttctca taggtcaata ggtattctgt caaaatctct
     1201 gcgtaaagtc ccttaggatt tagggaatgg agccagcgga catgtttctg tgtccaatta
     1261 tttcttccct cggtatagcg aaaatcatgt cggagacaga aggcaagaag ttgttgtttg
     1321 attttcttca gagccacttt gtggtctgtt ctcatgcgga tatattcttt gacttgttca
     1381 tcctcagcag taggaatatg aacaggccga tagctacgaa aggccagagc ttttgcgagc
     1441 tgagctgcat ctttcttatc agtcttgaca cgcttagatc cttccttcat caccgttgta
     1501 ggcgccatca cgatacaggg aatcccgtga gcttgtagct ggtgatatag ggtaaatcca
     1561 agacatccgg cttcgtagcc acataacact tctgcatctt gaccatataa acgacgaagc
     1621 tcattcacat agttcacaat atagctaaca tttggaccaa ctttagtgct atgtttgaat
     1681 tgattcgcca tcatatcata atagcagagt aaaaaacttt ctttgtgaac atccattccg
     1741 atgaaaagtg tggtaaaatg aaacatataa gacctccaat tgagtgtggt aattcctgtt
     1801 agaagttgat tgttttttat tctagtgtac aggtaaatcc acgaattctc aactgggggt
     1861 ctttacatat tgtctatacc aaaaatagaa tcatcaaata ggaaattcca ttatttaaca
     1921 tatgtagcgc aatcggatag cgaatatctc gtctaattaa atagagccaa ccaagattga
     1981 gacccatagt gaaataaatt aaaaactgca gaatggttgt tggcatatgg accaaactaa
     2041 acaaagaacc cgttacagca agatagattc caacagcctt catatctacc attttaggga
     2101 agaaataggt cgccaacaaa cctctaaaaa tcaattcctc taaaatcgga gcaaagatta
     2161 cgactgataa aaatgaaacc aaggggtagg cagacacaaa ttggatgacc aaggtttgat
     2221 tttgactttc agatataggt accaaaagtt ggaagatgaa aaatgcaata tagagcaaaa
     2281 taggccattg aatcttatgg aaccatgatg aagatacact atagtcaatg gtataccgag
     2341 aatacacaaa tttccataat acaattgtaa atgcaattcc gagaacaatg ccaataatcg
     2401 cacaaatcca aatcatattc tcaatcaatt gagctggaaa ttctggaata gcttgtaatg
     2461 acggccctac catcaaaaac ccagaaataa tttgataagc aacaaaaaat aaaaacaatg
     2521 atgcaatgtg ttttataaat tttaacatac tccctcccta aaaactcaaa tcaacaatat
     2581 tatcaactcg taccaacttg gtttcaatct ctccttccgc taattcacga gaaattttaa
     2641 cccattcctc atcaactgcc aaaatggtgt attcacaagc aatagaaatt tcctcatcaa
     2701 agcggatttt ggccttactt ccgaccaatt ctttcaataa aactgacatc tgattttctc
     2761 cttttgtagt tttctgcaac ttttttaccc tagcttgcaa ctgcttcact tttttcctat
     2821 ctgatagaga attgaaaaat agaaatccta ctagaatcca taaaaatagt ttcatcgtat
     2881 cctcctatat caagcccaga ctctgcatca gtagcatcaa caaaaatcca agaagattat
     2941 tcagactgtg tagaataagt gcattggtat atttgccaga aatacgatag gcgagtccca
     3001 ggaccaggcc catacctccg tagacaaccc aagatccgat attggttgga ttgtgaataa
     3061 gtccaaacaa aaaacttgat agcaataatc ccacaatcga atccttacca aatactctcc
     3121 ccataagaat ccctctgaaa agcagttcct ccaaaactgg agcaaagaaa actgcaaaga
     3181 gaaacaaaac taaggttggt aagcctgaat tgttgatgat ttcctgattg gcagtcgttt
     3241 gaccatatcc ctcttccaac ataatcaatt gcccaccaat tattttcaga ccaaacataa
     3301 cgataaaagc gaggactaca aacccaacat tcgcaaccat cccccatttc tgctcacctt
     3361 tccatagacc taatttacca gtcaagataa gaccaagcac cacggctaac aataaaagaa
     3421 ctgcagcaat cagtagatta ttaccgtcaa aatttggtag ggcaaacatg gccaactggg
     3481 tcaatacatt cagtgcaacg actgccagtc ccactaagag aaacttccaa tttttaacca
     3541 cattccaatc tttgacattt ccaagtctat tcatagcaat ctccttcaca tacactaaat
     3601 caattcttat cactttcttt tttgaacaat agcagagctg gcaagcccaa aaccatcggc
     3661 aagaggatat tcagattaga caaatcaatc tgcccagtag ccagccattc tccgaaaata
     3721 tagccaactg cgtacagacc gagaccgatt aaccccacga agtaaacaat ttttagaacc
     3781 gatataaact ttttattctc tttcataatc actaccaaaa ccttccctta tttaaaatac
     3841 cgacggatca tgcgaacctg catcacattg atataaatgt gcaaaaacgc cacaactaga
     3901 aatgccgtaa tttgtcgttc ctgcaatagc atgctaagta caaataggaa tagatacaaa
     3961 cctggtaaca cgatttgatt caaagtgaag acgatttgga aactcatttc gtagtttgct
     4021 tgtttctcac cttcgtccat cgcctcagca aagtccttca tttcttttac cgtagcaaaa
     4081 gcggataact tatagtcacg aattttctga gttaatttca tgataaaaat ctgagaaatg
     4141 agaagaatga catagaaaac tacatcaaaa attgacccgt acatgatcgc cccgtcttcg
     4201 aagaaggtaa caccaaatcc tagaaccaaa tttaacaatg tcaatgatac agcaacattg
     4261 aatgaaatgg tcgcgtactc taggttacga tacattttct tatatagttc atcaacatgt
     4321 tcctcatcct catctgaaat ggaatgataa agtttataat tttgattagc tttaacacca
     4381 aaatatacgg ttccagcgaa aattaaaaat gtaataatcc tcaaaaaaat tagaaaatta
     4441 tctaaattga gataagaagg taggctgaat ttaaagatta atactccaaa gaaaccgata
     4501 aagccaccca aaattgctga aatcagcata tacgctgaat atctcatcca tctttgtttc
     4561 gttgaaattt gtttcccctg tttcattctc ctacctccac taattgaaaa acattctcca
     4621 cattttcgtt aaaaatttga gcaattcgca tggcaatgac caccgagggc gtgtactccc
     4681 cccgctctat cagactaatg gtctgccgtg atacttctgc taactttgcc aactcagtct
     4741 ggttgaggct atctcgtgcc cgcaactcct tgagccgatt ttttaagaca tattccatga
     4801 tgtttccttt ctaggcttgg tagataatca agcctgtttc tgtgtcttcg acagctatat
     4861 tttccttggc aaacttgacc aataagagat agacataata gaaatcgcct gcacaagagg
     4921 ccgcatgcat ggttgccagc atgaagtaaa gagtggtatt catcatccca aatcctgcta
     4981 acatggtcaa gcccaaacta atcacaacaa agggagccaa gctgattact agcatttgca
     5041 tccgattgta gagcgaacct ggactggtcg cataggccat acccgatttc catttaaacc
     5101 cgtatttgac aggattttca ggacaaaaaa ctttgaagaa gatgccgtgg atagcctcat
     5161 gcacaactat taaaagaata tagagtggga aaagcaacca tacctccgac acgctcagtt
     5221 cccagtattg cgaaccgtta gctatcaacc aactgcctat cattccaaat acgaaggcaa
     5281 atggaagaat gagtgccaca gcaagaatat tcaatcccca cacaaacttc ttatttttca
     5341 tgatattgac ttcaaataat ttctttttcg cttccatgtt tcttctcctt catttgccta
     5401 caagctagac taaactatat agtcctagag caactccaat cagtaagccg ataaataatt
     5461 gcccctgcaa tcataatcgc taccatatct gctgaaatat tacgtttcat ggtctatctc
     5521 ctattactta tctccttttt ttctccattt gtaaacttgc ttcaatacaa gtaattgaag
     5581 caattagagt agtcattaga gctgtatcca tatcgctcca tcccagcaaa tcaaaaagga
     5641 gaatgtaagc caataataga atggacccta tttcgactgc acgcgcaatg gttgttcctg
     5701 taat
//
LOCUS       DASGBY010000121         5601 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.121, whole genome shotgun sequence.
ACCESSION   DASGBY010000121 DASGBY010000000
VERSION     DASGBY010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5601
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.121"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            24..1349
                     /locus_tag="U1396_001683"
     CDS             24..1349
                     /locus_tag="U1396_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342855.1"
                     /translation="MCYNHLMKKISDLGLTGRKLVGEGLILVFIGIGFLIAGWQFPGL
                     ILRFVHAGLFFLALYELSMTFFRKKKSSESVIALVGKAVLFGILASLDLAVQIPLYFA
                     AIFVGIYQLFTALINFITFYLYRKDGVQPRIRYLIDGIWLSLLGSASLFVSGTQLVVQ
                     TIVIGGYLILYGLTNLRDGFLFEEAIEQQSLKRHVRLTLPLFLAALVPRMTLQKVNDY
                     LADNEGQTAQSIYNRHKEIAEFPALEVFVHVGEEGFGAVGHVDLSYKGQVYGFGSYDV
                     LSERLGGAIGDGVLFRAERQAYIDFCNQEGMTMLGYQLALSSEQEKAVETRLAEIEGL
                     LLPWQPSAEKVSRRSDGQPIEMYAYRMKEAIGAVLFKFKKSKFKTYFVLSTNCVLLAD
                     SVIGQAGTDVLGLRGFIAPGTYQSYLDQEYEKPHSLVVAKNIYYRKEKS"
     gene            1425..4061
                     /gene="polA"
                     /locus_tag="U1396_001684"
     CDS             1425..4061
                     /gene="polA"
                     /locus_tag="U1396_001684"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEM5342856.1"
                     /translation="MKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPTGLHTNAIYGFN
                     LMLDHMMKRIEPTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDA
                     MGVKHYELAQYEADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKG
                     VAEFEEFTPAYLMEKMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSL
                     DGIYENIDSMKASKMKENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDEL
                     GQFYDDMGFKQLRAQLGTTSSQEEAVLDFQIVTEISPAMLKQDQFFYFEILGENYHRE
                     DLVGLAWGDKEKIYVGGPELLDSPVLRDFLENQTIKTYDFKRGKVLLDRKEITLPPAT
                     FDSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKGAKLDLPEREIFFPHLARK
                     VQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENE
                     VLIDQLTKEIYELAGQEFNINSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERL
                     APIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYVQDLTQTGRLSSTDPNL
                     QNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADI
                     HTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGITRKEAKAYIDT
                     YFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFAERTAINSPI
                     QGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMES
                     AISLSVPLIADENEGSTWYEAK"
     gene            4048..4830
                     /locus_tag="U1396_001685"
     CDS             4048..4830
                     /locus_tag="U1396_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM5342857.1"
                     /translation="MKQSKKGKSMKKLILCIGLCSLLLAGCGKASQKTEKTPASSGEE
                     FSTTLPILQEKQDTTNEQFNVLANAEVVAVNSTPPADETQKGHKIYAANNGVAEKDEN
                     GNIKEYFRYYNVPSTWTINAENTKDETVAAVYDVKEGGSNYMVQLYNINAFNQSPLED
                     GRNMTPEELEARMVETNHSFNEKTVVTINGQEWRVGRQLLTDQKLARLTFYRMESTAA
                     YDDSVVVGSIYYSLDPGTDKDRTNLKKVIGQVKDVVYQIAKK"
     gene            4950..5387
                     /locus_tag="U1396_001686"
     CDS             4950..5387
                     /locus_tag="U1396_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEM5342858.1"
                     /translation="MSYSFQNPSQDIIFDYLKNAKTIAVVGLSSREETAAYRVSKLMQ
                     EAGYKIIPVNPKAAGGTILGELVYSSLAEIDQPIDIVDVFRRSEFLPEVAQEFIQSNA
                     KIFWAQLGLESQEAEKLLRQAGRNDIVMNKCIKIEYLEMKEQY"
BASE COUNT         1696 a         1084 c         1250 g         1571 t
ORIGIN      
        1 tttctgtaaa cacaagtcta gaagtgtgct ataatcatct catgaaaaaa ataagtgatt
       61 taggattaac aggtcgaaaa ttagttggag aaggtctaat cttagtcttc atcgggattg
      121 gatttttaat tgctggttgg caatttccag gactgattct tcgatttgtt cacgcaggtc
      181 tattcttttt agctttatat gaattgagca tgacattttt cagaaagaag aaatcgagtg
      241 aaagtgtcat tgcgctagtt gggaaggctg ttcttttcgg gatcctagcc agtctcgatt
      301 tagctgttca aattcccctc tatttcgcgg ctatttttgt tgggatttat caacttttta
      361 cagctcttat caatttcatt actttttacc tatatcgaaa agatggagta cagccacgga
      421 ttcgctattt aatagatgga atttggttat ccttactagg ttcagcttcc ctatttgtgt
      481 caggcacaca gctggttgtt caaaccattg tcatcggagg ttatctgatc ttgtatggac
      541 taactaatct gcgtgatggc ttcttgtttg aggaggcgat tgagcaacag agtctaaagc
      601 gccatgtacg cctaaccctc cccttgttcc ttgcagccct tgtaccacgg atgaccctgc
      661 aaaaagtcaa tgattacttg gcggataatg agggacaaac ggctcaatct atctataacc
      721 gccacaaaga aattgcggag tttccagcat tagaagtctt tgtacacgtt ggagaagaag
      781 ggttcggagc agttggacat gttgatttga gttacaaagg gcaggtctac ggttttggtt
      841 catatgatgt cctgtcagag cgtttgggtg gtgcgattgg tgacggagtt ttgtttagag
      901 ctgagcgtca ggcctatatt gatttttgta accaagaagg aatgactatg ttgggctatc
      961 aattggcatt gagttctgag caggaaaaag cggtagaaac tcgactagct gaaatagaag
     1021 gtttactgct tccatggcaa ccaagtgcgg aaaaggtctc tagacggtca gacggccagc
     1081 ctattgaaat gtatgcctac cgcatgaaag aggcaattgg ggcagtactt ttcaaattta
     1141 aaaaatcaaa attcaaaacc tactttgtcc tctcaaccaa ctgcgtcctt ttggctgatt
     1201 cagtaatcgg tcaagcagga acagatgtcc taggcttgcg cggtttcatt gctccaggaa
     1261 cctaccaatc ttatctggat caagaatacg aaaaacctca tagtttagta gtcgcaaaga
     1321 acatttatta tcgaaaagag aaatcctagt cactgactgg gattttctgt tattccagct
     1381 ctctaagttc cacaaaactc ccccatccat gctataatag agacatgaaa aaaaataaat
     1441 tattattaat tgatggctct tcggtagcct tccgtgcttt ctttgcactt tataatcaaa
     1501 ttgatcgttt taagagtccg acaggtcttc acaccaatgc tatctacggc tttaacctca
     1561 tgctggacca catgatgaag cggattgaac cgacccacat tctcgtggct tttgatgctg
     1621 gaaagaccac cttccgtacg gagatgtacg ccgattataa ggcaggtcgt gccaagacac
     1681 cagacgagtt ccgtgaacaa ttccccttca tccgtcagat gctggatgct atgggggtca
     1741 agcattatga gctggctcag tacgaggcag acgatattat cggtaccttg gacaaaatgg
     1801 cagagcggac agagattcct ttcgatgtga ccattgttag cggtgataag gacttgatcc
     1861 agctgacaga cgaaaacacc gtagttgaga tttctaagaa aggcgtagcc gaattcgaag
     1921 aatttactcc agcctacctc atggaaaaaa tggggattac ccctactcag tttattgacc
     1981 tcaaggcttt gatgggagat aagtccgata acattcctgg cgtgaccaaa atcggtgaaa
     2041 aaacaggtct aaaactcctg acagaatttg gttctttgga tggtatctac gaaaacattg
     2101 acagcatgaa ggcttctaag atgaaagaaa acctgattgc tgataaggag aaggccttcc
     2161 tatctcgtac acttgctacc attgatactc aggcaccaat cgaaattggt ctggatgaca
     2221 ttgtttatca aggccccaag gtggatgaac taggacaatt ttatgatgac atgggcttca
     2281 aacaattaag ggctcagtta ggtacgacca gctcgcaaga ggaagcggta ctcgatttcc
     2341 aaatcgtaac ggaaatcagc cccgctatgc tcaaacaaga ccagtttttc tattttgaaa
     2401 tcttgggtga aaattatcac cgagaggatt tggttggttt agcttgggga gataaggaga
     2461 aaatctatgt cggagggcct gagctacttg atagtccagt cttgcgtgac tttttagaaa
     2521 accaaactat aaaaacctat gactttaagc gtggaaaagt tcttctcgac cgaaaagaga
     2581 ttacgctacc tccagctact ttcgatagcc gtctagccaa atacttgctt tccaccgttg
     2641 aggacaattc cctaacaacc attgccaacc tctatggtca gatcagtctt gttccagatg
     2701 aggcagttta tggcaagggt gctaagttag acttgccaga acgcgagatc tttttcccac
     2761 acttggcacg taaggttcag gttttgattg agacagaaga gccgatgttg accaaattag
     2821 aagaaaatca gcaattagat cttttgtttg acatggagtt gccactggca aatgttttag
     2881 ctaagatgga aattgctggt attaaggtgg aagctgagac tctcaaagct atgcaatctg
     2941 aaaacgaagt tttgattgac cagttgacca aggaaatcta tgaactagct ggtcaggaat
     3001 ttaatatcaa ttcgcctaag cagcttggga ccattctctt tgaagagatg ggactaccgt
     3061 tggaatatac caagaaaacc aagacaggct attcaacagc agtagatgtc ttagaacgat
     3121 tagcgccaat tgcaccagtt gtttcaaaaa tcttggaata ccgtcagatt accaaacttc
     3181 aatcaactta tgtagtcggc ttgcaggatg ccattttaga agatggtaag atccataccc
     3241 gctatgtgca ggatttgaca caaacaggtc gtctatcttc gacggaccct aacttgcaaa
     3301 atattcctgt tcgtctagaa caagggcgct tgattcgtaa ggcatttgtg ccatcgcttg
     3361 aaaatagtgt ccttttggca tcggactatt cacagattga attgcgcgtc ttggctcata
     3421 tttctcagga caagcatttg attgaggcct tccagcaagg tgcagatatt cacacttcga
     3481 cagctatgcg ggtcttcggt atcgaaaaag ctgaggatgt gacaccaaat gaccgtcgga
     3541 atgccaaggc tgtaaacttt ggtgtcgtct atggtatttc agatttcggt ctatccaata
     3601 acttggggat tacacgtaag gaagctaaag cctatatcga tacctatttt gaacgcttcc
     3661 caggaattaa gaattacatg gaaaccattg ttcgtgaggc acgtgataag ggttatgtag
     3721 agacgattta caaacgccgt cgtgaattac cagatataaa ctctcgcaat ttcaatgtcc
     3781 gtaattttgc ggagcgaaca gctatcaact caccaattca aggttcggcc gcagatattc
     3841 tcaaagtagc catgattaat cttgacaagg ctttgactga agcaggtctt gcgacacgta
     3901 tgttattgca agtacacgat gagattgttt tggaagtccc agtggcagag ctagaaacgg
     3961 taaaagccat ggtaaaagag accatggaat cggcgattag cctgtctgtg ccattgattg
     4021 cggatgaaaa tgaaggttca acatggtatg aagcaaagta agaaaggaaa aagtatgaaa
     4081 aaattaattc tttgtattgg tctatgtagt cttctacttg caggttgcgg aaaagcatcg
     4141 cagaagactg agaaaacacc agcttcttca ggggaagagt tttcaaccac cttaccgatt
     4201 ttgcaagaaa aacaggatac tacgaatgaa cagttcaatg ttttagcaaa tgcagaggtt
     4261 gtagctgtta atagtacacc acctgccgac gaaacacaaa aaggccacaa gatttatgcg
     4321 gccaataatg gtgttgctga aaaagatgaa aatgggaata tcaaggaata tttccgttat
     4381 tataatgtgc catctacttg gacaattaat gcagaaaata ctaaggatga gacggtcgct
     4441 gcagtctacg atgttaaaga ggggggaagc aattacatgg ttcaactcta taatatcaat
     4501 gcttttaatc agtctccatt ggaagacggt cgcaatatga cgccggagga attagaagca
     4561 cggatggttg aaacaaatca ttctttcaat gaaaagacgg ttgtcacaat caatggtcag
     4621 gaatggcggg ttgggcgaca gttattaaca gatcaaaaat tagctcgtct gactttttat
     4681 cggatggaat cgacagctgc ttatgacgac tctgtggttg tgggttcaat ctattattcc
     4741 ttagatccag gaaccgataa agatcggacc aatcttaaaa aggttatcgg gcaagttaag
     4801 gatgtcgtgt accaaattgc taaaaaataa tcaaggtaga caagctataa tcagtaacga
     4861 gttaacactg acaagattgt gttatagcac accttattca ttaagctttt attgattcta
     4921 acatttaata tacattaaag gaggtctcta tgtcttattc cttccaaaat cctagtcagg
     4981 acattatctt tgactatctg aaaaatgcta agaccattgc agtggtcggt ttgtctagtc
     5041 gagaagagac ggcagcctac cgcgtttcca agctcatgca ggaagcgggc tataaaatta
     5101 ttccagttaa tcccaaggct gctggtggga ctattttagg cgagctggtc tatagtagtc
     5161 tagcagagat tgaccaacct attgatattg tagatgtttt ccgcagaagt gaatttttac
     5221 cagaggtagc acaggaattt atccagtcga acgccaaaat tttctgggct caactcggtt
     5281 tagaaagcca agaagcagaa aaactattgc gtcaggcagg tcgtaacgat attgtcatga
     5341 ataaatgtat caagattgaa tatcttgaaa tgaaagaaca atactaataa gtcgggtata
     5401 tttatccgac ttttttcatc gaaaaagcag ttcaatgaac cattgaactg ccggatgact
     5461 ctaaggagga gcacttagaa ttggaacaaa ttactacaca tggcgtaaaa aatagaaagg
     5521 aagaaatctg ctccaatacc aagcaggcta aaatagtcct ttgtcgctcc tcaattatag
     5581 tataacacaa tccaaatgtt t
//
LOCUS       DASGBY010000122         5537 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.122, whole genome shotgun sequence.
ACCESSION   DASGBY010000122 DASGBY010000000
VERSION     DASGBY010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5537
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.122"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            95..1369
                     /locus_tag="U1396_001687"
     CDS             95..1369
                     /locus_tag="U1396_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM5342859.1"
                     /translation="MKKIGRYVTLLAAAGLLAACSTSTESSKTTEGSSSGKTEISYAI
                     WDSGQEPGLRKIADEFEKKNPDIKINIQVSDWDSYWTMLEAGATGGSLPDTFWMHSNE
                     IYRYGSNEMLLPLDEYLAKSEDAKLANFPDGLNEIYNINGKQYAIPKDFDTIGLWYNK
                     KLFDEAGIPYPDDTWDWNKLKEVAKKLTKPDGSQYGFGAGLSNQEGYYNFIYQNGGKV
                     ITDDLKSGYADPKTIEALDYYFSFVKEKISPAITVDKERAEAFQNGQVAMSVFGSWNL
                     SGFTANDYIRENADVAVLPKGPDGTRATIFNGLGHAIAATTKHPDAAWKWVEYLSSKE
                     AQEMQATLGVAISAYKGAADTWVDSNKNFTIKNYVDMVDYAQIRPYSQTTIKWEDKAY
                     ELLKPAYLGEKATEEAAKETADMMNAELATEK"
     gene            1438..2331
                     /locus_tag="U1396_001688"
     CDS             1438..2331
                     /locus_tag="U1396_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5342860.1"
                     /translation="MFRKKGSLNEAIWGWGMVAPTIIGLIVLNIIPIFQTMKMSFHKS
                     GDFGKGDIFVGLANYQRMLGDAQVWQATWNTLKYTILVVPATVALAMLLAVLLNSKIK
                     GKHIYRTIFFLPMVAAPAAVTMVWKWLYNTDFGLINYILRRLGLGAVNWIEDPKIALY
                     SIALIGIWSTVGYSMILILAGLQEIPTDFYEAARIDGASPAKQFFSITLPLVSPTLFF
                     VVVTSVIQSMQVFDVIYMMEDVRSPAYDKTVSLVYLFYNNSFKYSDKGYGSTIVMLLL
                     LIILVITFVQMKVQKKWVHYR"
     gene            2342..3172
                     /locus_tag="U1396_001689"
     CDS             2342..3172
                     /locus_tag="U1396_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5342861.1"
                     /translation="MKQSAFKSTIWMHAFLILVAMGMLIPFVWMVLTSFKTVTESTQM
                     NPFHFLPSNWMVSNYTEAIRTNNFPILYLNTILMMLYRIFSSVMFSAMAAYAFARLEF
                     PGRNFLFGLVLFQMMVPPQLFVIPQYLMIDQLGMRNTIFALVFPGIVSAFGTFLLRQF
                     FMGLPKELEESAKLDGCNIGQTFFKVMLPLAKSGLIALAIFTALFAFKDLLWPLIINS
                     EADKATLSSALSKIQGAYAVNYPQLMAASVLAIWPMLVLYVVFQKQFIQGIATSGGKL
                     "
     gene            3182..5383
                     /locus_tag="U1396_001690"
     CDS             3182..5383
                     /locus_tag="U1396_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM5342862.1"
                     /translation="MGIIFHEKTKEFHLYNEFISYVLTVLPNGHIGSLYYGKRVTETA
                     SYQYVREDEYRALTSFVEDDDRFFSLQYANPEFACYGTTDYFSPTFELVQKDGSSLSH
                     FVYQGHVIYAGRSALKGLPHLYLDEEGQADSLDIYLLDEESQTRLVLSYTIFRDYPAV
                     TRSARFEQLGEQSVCLNRALSMTLCLPDMDYDWLHLDGAWGRERHLQLSPLHQGCQSI
                     YSLKGASSAEHNPFMALKRPTADEQQGEVLGFSLVYSGNFLAQVDVSSFQKTRVSMGI
                     HPERFSWTLDKGEEFQTPEVVMVYSEHGLNGMSQTYHRLFQKHLVRGYWRDRERPVLL
                     NNWEAMSFDFDEETILSLAKEAAGLGVELFVMDDGWFGKRNHDRAGLGDWTVNREKLP
                     SGLTGIIDQVHAMGMKFGLWIEPEMVNKDSDLYRAHPDWIFHHPQHSQSHGRHQYTLD
                     LSREDVYQNIHDQLHRLLAEHDIDYIKWDMNRYMTEVFTCTREAERQGETFHRYILNL
                     YRLYDSLIAAFPTVLFESCSSGGARFDPGMLYYAPQTWVSDDTDAMERLKIQYGTSMV
                     YPLNSTGCHVSASPNQQLGRATPLSTRANVAFFGSFGYELDLFECSQEELEEMKEQIA
                     FYKAHRKLFQQGIFTRLKSPFDGEITAWQVQSLDGQQVIVGYYRRLTTANLSYQRLYL
                     QGLEEEAVYHLDGEVYTGSQLMHTGLSIRHGDHVGDNKDFTSYLMVLQKQQ"
BASE COUNT         1482 a         1033 c         1330 g         1692 t
ORIGIN      
        1 attcctattt gattataaag cgcttacatg ttatagttat agtagaaata acaaagttcg
       61 tcgacatatt cgacaaaaga aaaggagtat tatcatgaag aaaattggtc gctatgttac
      121 cttgcttgcg gctgcaggcc tgctggcagc gtgttctact tcgactgagt ctagcaaaac
      181 tacggaagga agtagttcag gaaagacaga aatatcctat gctatttggg attctggtca
      241 agagcctggt ttgagaaaga ttgcggatga gtttgagaaa aagaatccag atattaaaat
      301 caatattcaa gtatcggact gggattccta ctggaccatg ttagaagctg gtgcgacagg
      361 tggttcattg cctgatacct tctggatgca ttcaaatgag atttatcgct atggttccaa
      421 tgaaatgcta ttgccattgg atgaatactt agccaagagt gaagatgcta aactagctaa
      481 tttcccagat ggtttgaatg aaatctacaa cataaatggt aagcagtacg ctattccaaa
      541 agatttcgat acaatcggtc tttggtacaa taaaaaatta tttgacgaag caggtattcc
      601 atatccagat gatacttggg attggaataa gttgaaagaa gtagcgaaga aattgaccaa
      661 gccagatggt agtcaatatg gtttcggtgc tggtttgagt aaccaagagg gctactacaa
      721 ctttatctat caaaatggtg gtaaggttat tactgatgat ttgaaatcag gctatgctga
      781 tcctaagacc attgaggctt tggattacta ctttagcttt gtcaaagaaa aaatttcacc
      841 ggctattaca gtagataaag agcgggccga agcattccaa aacggtcaag tggctatgag
      901 cgtcttcggt tcttggaatt tatctggttt cactgctaat gactacattc gtgaaaatgc
      961 tgatgtagct gtcttgccaa aaggtccaga tggaactcgt gcaaccatct ttaatggatt
     1021 gggtcatgcc attgctgcta ccactaagca tccagatgct gcttggaaat gggttgaata
     1081 cctcagctca aaagaggcac aagaaatgca ggcaacactt ggtgtggcaa tctcggctta
     1141 taaaggcgcg gcagatactt gggtagattc aaacaaaaac tttactatca agaattatgt
     1201 tgacatggtg gattatgcac agattcgtcc atattcacaa acaaccatca agtgggaaga
     1261 taaggcttat gagctattga aacctgctta tcttggagaa aaagcaactg aagaagctgc
     1321 caaagaaaca gctgatatga tgaatgctga attagcaact gaaaaatagg taggaggtct
     1381 tgggaagttg attcttcccc ggaccttctt attaaaatga agaaggatgg ggataagatg
     1441 ttccgaaaaa aaggaagttt aaatgaggca atttggggat ggggaatggt agcaccgacc
     1501 attattggat taatcgtgct caatattatt cctattttcc aaaccatgaa gatgagtttt
     1561 cataagagtg gagatttcgg taaaggcgat atttttgtcg gcttggcaaa ttaccaacga
     1621 atgttagggg atgcgcaagt gtggcaggcg acatggaata ccttgaagta cacgattcta
     1681 gttgttccag ctaccgttgc cttggccatg ttgcttgcag ttttgcttaa ttctaagatt
     1741 aaaggtaagc atatttatcg aaccattttc ttcttgccta tggtggcagc accagccgca
     1801 gtgaccatgg tttggaaatg gctctacaat acggacttcg gcttgattaa ctatatcttg
     1861 cgtcgtttgg gactgggtgc tgtgaactgg attgaagatc caaagattgc tctatactca
     1921 atcgctttga ttggaatttg gagtacggtt ggttatagta tgattttaat tttagctggt
     1981 ttgcaagaaa ttccaacgga tttttatgag gcagctcgca ttgatggagc tagtccggcc
     2041 aagcaatttt tctccattac cctgcccttg gtttcaccaa ccctgttctt tgttgtggta
     2101 accagtgtca ttcaatccat gcaagtcttt gatgttatct atatgatgga ggatgttcgt
     2161 agtcctgcct atgataagac agtatctctg gtttatctgt tttacaataa ttcctttaaa
     2221 tattcggata agggctatgg ctccaccatc gtcatgttgt tgttattaat tattcttgtc
     2281 attactttcg ttcagatgaa ggtacagaaa aaatgggtgc attaccgtta aggaggttca
     2341 tgtgaaacaa tcagctttta aatcaacaat ctggatgcat gccttcttga ttttagtggc
     2401 aatgggcatg ctgatcccat ttgtttggat ggtgttgacg tcttttaaaa cggtaaccga
     2461 atccactcag atgaatcctt tccacttttt accaagtaac tggatggtga gcaattatac
     2521 ggaggctatt cggactaata atttcccgat actttatctg aacaccattt tgatgatgtt
     2581 atatcgtatt tttagctcgg tcatgttctc agccatggca gcttatgcct ttgctcgact
     2641 ggagtttcct gggcggaatt tcttgtttgg tctggtcctc tttcaaatga tggtgccacc
     2701 tcagttattc gtcattcctc agtatttgat gattgaccaa cttggtatgc gcaatacgat
     2761 ttttgctctg gtattcccag gaattgtcag tgcctttggg acattcttgc tccgtcaatt
     2821 tttcatgggt cttccaaaag aattggagga atctgcaaaa ttggatggtt gtaatatcgg
     2881 gcagaccttc tttaaggtca tgttgccttt ggccaagtct ggcttgattg ccttagcgat
     2941 ttttacggct ttgtttgctt tcaaggattt gctgtggcca ttgattatca actcagaagc
     3001 ggacaaggct accctgtcta gcgcactttc taagattcag ggagcttacg ctgttaacta
     3061 tcctcagctc atggctgcaa gtgttttggc tatttggccg atgttggtac tgtatgtggt
     3121 attccagaag cagttcatcc aagggattgc gacatctggt ggaaaattat aggaggctac
     3181 aatgggaatt atctttcatg aaaagacaaa ggaattccat ctttacaatg agtttattag
     3241 ctatgtgttg acggtcttgc ctaatggtca tattggtagt ttgtattatg gaaagcgtgt
     3301 aacagaaaca gcttcctatc agtatgtgcg tgaagatgag tatcgtgctt tgacttcctt
     3361 tgtagaagac gatgaccgtt tcttttcgct ccaatatgcc aatcctgaat ttgcttgtta
     3421 tggtacaacg gactattttt ctccgacttt tgagttggtg cagaaggacg gtagtagcct
     3481 gtcgcacttt gtgtatcaag gtcatgtgat ttatgctggg cgatcggctt tgaagggtct
     3541 tcctcatctc tatctggatg aggagggaca ggcagatagt ttggatattt atttgttgga
     3601 tgaagagtcg cagacccgcc tggtcttgtc ttatacgatt tttcgagatt atccagcggt
     3661 gactcgctct gctcgttttg aacaactcgg agaacaatct gtctgtttga accgtgcctt
     3721 gagtatgaca ctttgtctgc ctgatatgga ctatgattgg ttgcatttgg atggggcttg
     3781 ggggcgtgag cggcatctgc aactatcgcc tcttcatcaa ggttgtcagt ctatttacag
     3841 tctcaaaggg gctagtagtg cggagcacaa tccctttatg gctttgaaac gcccaactgc
     3901 ggatgagcaa cagggagagg tactaggctt ctcgctcgtc tatagcggaa actttttggc
     3961 gcaggtggat gtgagttctt tccaaaaaac aagagtgagt atgggaatcc atcctgagcg
     4021 tttttcttgg acattagata agggagaaga gttccagacg cctgaggttg ttatggttta
     4081 tagcgagcat ggtttgaatg gcatgagcca aacctatcac cgcctcttcc aaaaacatct
     4141 ggtacgtggc tattggcgtg atagagagcg acctgttctc ttgaataact gggaagccat
     4201 gagttttgat tttgatgagg aaacaattct ttccttggcc aaagaggctg caggtcttgg
     4261 tgttgaactc tttgtcatgg atgatggttg gtttggcaag cgaaaccatg accgagcagg
     4321 cttgggagat tggacggtca accgagagaa attaccaagt ggcttgacag ggattattga
     4381 ccaagttcat gctatgggaa tgaaatttgg actttggatt gaacctgaaa tggttaataa
     4441 agacagcgat ttataccgag cgcatccaga ctggattttc catcatcctc agcatagtca
     4501 atctcacgga cgccaccaat atacgttgga tttgtcaagg gaggatgttt atcaaaatat
     4561 tcatgaccaa ctccatcggc tgttggctga gcatgatatt gattatatca agtgggacat
     4621 gaaccgctat atgacagagg tatttacctg cacaagggag gcggagcggc aaggggagac
     4681 cttccatcgc tatattctca atctctaccg tttatatgat agcctgatag cggcttttcc
     4741 gacggttctg tttgaatctt gttcaagtgg tggagctaga tttgacccgg gaatgctcta
     4801 ctatgcaccg caaacctggg tcagtgatga tacggacgcc atggaacgct tgaaaatcca
     4861 atatggaacg agcatggtat atcctctaaa tagcacgggt tgtcatgtgt cagctagtcc
     4921 gaatcagcag ttggggcgtg ctactccact aagcacacgt gccaatgttg cattctttgg
     4981 aagttttggc tatgagttgg atttgtttga gtgtagccaa gaagagttgg aagagatgaa
     5041 ggagcagatt gccttttaca aggctcaccg taagcttttc caacagggta tttttactcg
     5101 gctgaaaagt ccattcgatg gagaaataac ggcttggcag gtccaatcct tggatggtca
     5161 gcaagtcatc gtgggttatt accgtcggtt aacaacggct aatctctcct atcaacgctt
     5221 gtatttgcag ggattggaag aggaagcggt ctatcacctt gatggagaag tttatactgg
     5281 tagccaatta atgcatacag gtttgtcgat tcgacatgga gaccatgttg gagacaataa
     5341 ggactttact tcttatttga tggtccttca gaaacaacag tagcatccct atccctaggc
     5401 ccagctatcg gctgggtcta ttttatgcag aaagtacatc aatgagggca agacctctac
     5461 ttatactctt cgaaaatcaa aattatccgt tgtcaacttg ccttgatgaa ctccagttct
     5521 atcttcggct tcgtttc
//
LOCUS       DASGBY010000123         5515 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.123, whole genome shotgun sequence.
ACCESSION   DASGBY010000123 DASGBY010000000
VERSION     DASGBY010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5515
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.123"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            18..158
                     /locus_tag="U1396_001691"
     CDS             18..158
                     /locus_tag="U1396_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342863.1"
                     /translation="MSFKFLQVKRMEEKAFTEKEKTELLEQAEFLEELALDLQTMRFM
                     AY"
     gene            171..554
                     /locus_tag="U1396_001692"
     CDS             171..554
                     /locus_tag="U1396_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NisI/SpaI family lantibiotic immunity
                     lipoprotein"
                     /protein_id="HEM5342864.1"
                     /translation="MKKKVFGLLALGSIILTACSFSSAGLSFDEGYQTFHYKGKDYAV
                     SKQEVAENNIQEVEVKFMEWPVVKEEGAVKKTVSLNNLYITTSKEWAIGVQDGYYKVD
                     LEDNIAESDRIDYQAVLDQVDLDSE"
     gene            571..1323
                     /locus_tag="U1396_001693"
     CDS             571..1323
                     /locus_tag="U1396_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017650232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342865.1"
                     /translation="MLLEINHLEKVYRTRFSKEETRALQDVDFKVEEGEFIAIMGESG
                     SGKTTLLNILATLDKPTRGSVILNNQDITKIKESKLADFRLRNLGFVFQDFNLLDTLS
                     IQDNIFLPLVLARESYEEMEKRLKVLAPKLRIQDLLKKRPFELSGGQKQRVAIARSLI
                     TQPQIVLADEPTAALDYRNSEDLLNLFEDINLDGQTILMVTHSANAASHAKRVLFIKD
                     GRIFHQLYKAGKSNQDFAKEISLNMSALLGGE"
     gene            1324..3294
                     /locus_tag="U1396_001694"
     CDS             1324..3294
                     /locus_tag="U1396_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5342866.1"
                     /translation="MFYLKLAGQNIRKSIGVFAPFVLASLVLFTLICSMFLLMLSPVM
                     KTMGTGAVSIGLGVVVLTIFSVIMEIYSFNFLMKQRAREFGLYNMLGMNKKKVALIAS
                     IELMMIFLLVVVLGSVLAGVFANVLYLIFVNITHYSDLHFGIEPLAFVMTAFLFAGFF
                     FLLELLAIRTIGKTSPLILFRASEKGEREPKGNVLLAALGVLSLGMGYYLSLSSKAEG
                     LAVIYRFFIAVLFVIAGTYLFYISFMTWYLKARRKNKRYFYTPEHFITTSQMIFRMKQ
                     HATGLANITLLAVMAFVTIATTTSLYTGMANMTSGLYPKETSITYKVSYRSQGVAAYQ
                     QSVLSHFPEKANDNLSYLTYQAGLVYDGGSDIVINPETIANPDFSKMAFTYFITQDDF
                     RKLGNDLPELAANQVAFMRPSEMPSLKKLVLGDQTFENVANLDQAIFPDITNTLNAAV
                     MVVSDDTVLDAVREYYESNNPQGYTVSLDYRVFTDLTDEEVASIGQQTGDSYNINDAN
                     GEFLGYAMQKSDFNNLLMGFTGSFLFTGFLLGISFLLGAALIIYYKQYSEGHEDKKSY
                     KILQEVGMSQQAVKKTINSQTLLVFFMPLAMATLHFIVALVMLKQMLMVFGVVSSSMI
                     YTVSGITLLAVVLIYFVIYKWTSRTYYRIIER"
     gene            3386..3625
                     /locus_tag="U1396_001695"
     CDS             3386..3625
                     /locus_tag="U1396_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5342867.1"
                     /translation="MAAITLKVSEQDKLFMQAMAKFEGVSLSELIRTKTLEALEDEYD
                     ARVADVAWAEYQADLANRIEPMTLEQMAEELGIEL"
     gene            3615..3872
                     /locus_tag="U1396_001696"
     CDS             3615..3872
                     /locus_tag="U1396_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5342868.1"
                     /translation="MSYKVILSAKAQKQIRKMDKTAASLILRYLYKHIDGCDNPRQYG
                     KALTANRSGQWRYRIGNYRVIVNIEDDKLIVTSIKMRNGSI"
     gene            3911..4576
                     /locus_tag="U1396_001697"
     CDS             3911..4576
                     /locus_tag="U1396_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012961975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5342869.1"
                     /translation="MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAE
                     IKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFISSSDDEMNAVMAMNMGGDDFVSK
                     PFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
                     ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGY
                     LVK"
     gene            4573..5514
                     /locus_tag="U1396_001698"
     CDS             4573..5514
                     /locus_tag="U1396_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5342870.1"
                     /translation="MIAKFIREYRSFYFSYIVLATSFILLFFLYQLPTEFLQNALLLS
                     LTLLILLTVGLFWKFRNRMRALEDYVHEEALPLLNKPVDLAYLNLIEAEKEATREQLL
                     VYKSREEDLQAMVKMWSHQMKVPLAALSLMSQTDNLNQQDVNHQLLRLDNYMANLLNY
                     LKLTNHASDFRFEQVEVREVVVDLVKKYRNQFLQKDISVTIDGNWLLKSDRKWLSFAL
                     SQIIDNALKYNKTGGKVAIELNEGISISDTGIGILAEDIPRLFDEGFTGFNGREHQKA
                     TGFGLYLTKRVLNQLELAISVESQLEVGTSVTITKVQ"
BASE COUNT         1570 a         1099 c         1285 g         1561 t
ORIGIN      
        1 agaaagaagg aaatcatatg tcatttaaat ttttacaagt aaagagaatg gaagaaaagg
       61 cattcacaga aaaagaaaag actgaactct tggaacaggc agaattttta gaggagctgg
      121 cacttgattt gcaaacaatg cgatttatgg catactagag ggaggaaact atgaaaaaga
      181 aagtatttgg cttgctggct ttgggcagca taatcctaac cgcttgttct ttctcttcag
      241 caggcctgag ctttgatgag ggctatcaaa ctttccatta caagggaaaa gactatgccg
      301 ttagcaaaca ggaagttgcc gagaataata ttcaagaagt agaagtcaag tttatggaat
      361 ggcctgttgt caaagaagag ggggcagtga aaaagacagt atccttgaat aatctctata
      421 taaccactag caaggaatgg gccatcggtg tccaggatgg ttattataag gtggatttag
      481 aagataatat tgctgaatca gaccgaatcg actatcaagc agttcttgac caagttgatt
      541 tagacagtga ataaggaatt aggagtaact atgttattag aaatcaatca tttagaaaaa
      601 gtttaccgca cgcgcttttc aaaagaggaa actcgtgctt tgcaagatgt ggattttaag
      661 gtagaagagg gtgagtttat cgccatcatg ggtgaaagtg gttcaggtaa gacgactttg
      721 ctcaacattc tagcaaccct ggacaagccg acgaggggct ctgttatctt aaataatcaa
      781 gacatcacca aaatcaagga aagcaagctg gcagatttcc gtttgcgtaa tctaggcttt
      841 gtcttccaag attttaacct cttggacacc ctgtctatcc aagacaatat ctttttacct
      901 ctggtattgg cgcgtgagag ctatgaggaa atggagaaac ggttgaaagt tttggcgcca
      961 aaactgcgga ttcaagattt gctgaaaaaa cgtccttttg agctgtctgg tggacagaag
     1021 cagcgcgtgg ccattgcccg tagtttgatt acccagccgc agattgttct agcggatgaa
     1081 ccgacggctg ccctagatta ccgcaattcg gaagacttgc tgaatttgtt tgaagacatc
     1141 aacctagatg gacaaacaat tctcatggta actcactcag ccaacgcagc cagccatgcc
     1201 aaacgcgtcc tcttcatcaa ggatggtcgg attttccacc aattgtacaa ggcaggtaag
     1261 agcaatcaag actttgccaa agagatttcg ctcaatatgt ctgcactttt agggggtgag
     1321 tagatgtttt acctcaaact tgctggacaa aatatccgaa aatccatagg tgtttttgct
     1381 cccttcgttt tagctagtct ggtcctcttt accttgattt gttctatgtt cttgctcatg
     1441 cttagtccag tcatgaaaac catgggaaca ggtgccgtgt ctatcgggct gggtgtcgtt
     1501 gttctgacca ttttctcagt cattatggag atttatagtt ttaatttcct gatgaaacaa
     1561 cgggcgaggg aatttggtct ctataacatg ctggggatga acaagaaaaa agtagcctta
     1621 atagccagca tcgaattgat gatgatattc ttactggttg tggttcttgg ttctgtccta
     1681 gctggtgtgt ttgcaaatgt tctctacttg atttttgtca atataacaca ttatagtgat
     1741 ttacattttg gaattgagcc tctggccttt gtcatgactg cctttctctt tgctggtttc
     1801 tttttcctct tggaattgct ggccattcga accattggta agaccagtcc gctgattttg
     1861 ttccgagcta gtgaaaaagg agagagagag ccgaaaggaa atgttcttct agctgctctt
     1921 ggtgtcctta gtcttgggat gggctactac ctatcgcttt catcgaaagc agaaggtcta
     1981 gctgttatct atcggttctt tatcgctgtg ctatttgtca ttgcggggac ctatctgttc
     2041 tacatcagtt ttatgacttg gtatttgaag gctcgtcgga aaaacaagcg gtatttctat
     2101 acgccggagc atttcattac gacttcgcag atgattttcc ggatgaagca gcacgcaacg
     2161 ggtttggcta atattacgct acttgcggtc atggcctttg tgaccattgc gacaacgaca
     2221 tccctctata caggtatggc aaatatgaca agtggactct atcccaagga aacatctatt
     2281 acctataaag tttcgtatag aagtcaaggt gtagctgcct atcagcaatc ggtgctcagc
     2341 cattttccag aaaaagccaa tgacaatcta tcctatctga cctaccaagc aggtttggtc
     2401 tatgatggtg ggagcgatat tgtcatcaat ccagaaacca ttgccaatcc agactttagc
     2461 aaaatggcct ttacctactt catcacccaa gatgatttca ggaaattggg gaatgacctg
     2521 ccagagctgg ctgccaatca agttgccttt atgcgtccga gtgaaatgcc gtcgcttaag
     2581 aagcttgttt tgggcgatca aacctttgag aatgtagcca atcttgacca ggctattttc
     2641 ccagacatca ccaatacgct aaatgccgcc gttatggtag tcagtgatga cactgtgttg
     2701 gatgctgttc gtgagtatta cgagtccaat aatccgcaag ggtatacagt cagtctggac
     2761 taccgtgtct ttaccgactt gactgatgaa gaggttgctt cgattggtca acaaactggc
     2821 gactcttata atatcaacga tgcaaacgga gaattcctag gatatgctat gcaaaaatca
     2881 gattttaaca atttactgat gggctttaca ggcagtttcc tctttacagg tttcttgctg
     2941 ggcattagtt tcctacttgg tgcagccttg attatctact acaaacagta ctcggaagga
     3001 catgaggaca agaaatccta caagattttg caggaagtgg gtatgagcca gcaggctgtt
     3061 aagaaaacca tcaactctca aacactcttg gtcttcttta tgccactggc tatggcgacc
     3121 ctgcacttta tcgtcgcact agtcatgctc aagcaaatgt tgatggtgtt cggtgtagtt
     3181 tcttccagca tgatttatac ggttagtggt attactttgc ttgctgttgt cctcatctac
     3241 tttgtcattt acaagtggac cagccgaacc tattatcgta ttattgaacg atagcagaag
     3301 tctcgccttg tgcgagattt cttgcttttt cagggaaatg gtgttacaat ggtaatacca
     3361 aaggaatact caaagaggta agaaaatggc agctattaca ttgaaagttt ctgagcagga
     3421 caagctcttt atgcaggcta tggcaaagtt tgaaggtgtc agtttgtcag aactcattcg
     3481 gactaaaacc cttgaagccc ttgaagacga gtacgatgcg cgtgtggcag acgttgcttg
     3541 ggcagaatac caagcagact tggcgaatag aattgagccg atgacattag aacaaatggc
     3601 tgaggagttg ggcattgagt tataaggtta ttttgtctgc taaggcccaa aagcaaattc
     3661 gaaagatgga taaaaccgct gcaagtttga ttttgcgcta tctctacaag catattgacg
     3721 gttgcgacaa ccctagacaa tacggaaaag ccttgactgc taatcgttct ggccaatggc
     3781 gctatcgtat cggcaattac agggttatcg ttaatattga agatgataaa ttgattgtga
     3841 caagcataaa aatgagaaat ggaagtatat aagccaagac ctgtgtcctg gcttttgcag
     3901 aatgaagaag atgaaaaaag agaagattta tattgttgaa gatgatgaga tgattgtcca
     3961 gctcttgaag cagcatttgg gaaaatcgta tcaggtggaa agtgtgcaga atttccgagc
     4021 tgtcagtcag gaagtcgctg aaatcaaacc agacttggtg ctgatggaca ttagcctgcc
     4081 ttattacaac ggtttttact ggacgacaga aatccgtaaa accatgacca tgcccattat
     4141 ctttatctcc tctagcgatg atgagatgaa tgcggtcatg gccatgaaca tgggtggcga
     4201 tgattttgtg tctaagccgt tttctctggg gattttggat gccaaaatcg gcgccttctt
     4261 gcgtcgggtt aatcaattca gcaaatcaac tgatttgtca attgaccagt tccaacttag
     4321 tttagacggg cgattttcaa acgaattgga acaggttcaa ttgtctccta cggaaaccaa
     4381 gattttgtcc gccttactag aaagacaagg gcagattgtc agcaaggaag aactcctgga
     4441 aaaactctgg gaaaatgaag aatttattga ccagaacacg ctcaatgtca acatgaccag
     4501 actgcgtaag aaggtgagcg aagtcgggtt tgaacgaatt catacggttc gtggcgtggg
     4561 gtacttggtc aaatgatagc aaaatttatc cgtgaatacc ggagttttta cttctcctac
     4621 attgttctgg ctactagttt tatcttgctt ttctttctct atcaactgcc caccgaattc
     4681 ctgcaaaacg ctctgctatt gtccctaacc cttttaatcc tactgactgt agggcttttc
     4741 tggaagtttc gcaaccgcat gagagccttg gaagactatg ttcatgagga agccttgccc
     4801 ttgctcaata agcctgtgga ccttgcctat ctcaacttga ttgaagcgga gaaggaggcg
     4861 acacgagagc agcttttggt ctataagtca cgagaagagg acctgcaagc catggtcaaa
     4921 atgtggtccc accagatgaa agtgcctctg gctgccctgt ctttgatgag ccagactgac
     4981 aatctcaacc agcaggatgt caatcaccag ctcttacgct tggacaatta tatggcaaat
     5041 ctcctcaact acctcaagct gaccaaccat gccagcgatt ttcgatttga gcaggtggaa
     5101 gtaagagaag tggtggtgga tttggtcaaa aaataccgca atcagttctt acaaaaagac
     5161 atttcagtga ccatcgatgg aaattggcta ctgaagtccg acagaaaatg gctcagcttt
     5221 gccttgtcac agataatcga caacgccctc aagtacaata agactggtgg aaaggtagcc
     5281 attgaactga atgagggaat ttccatttcc gatacgggaa ttgggattct ggcagaagat
     5341 attccacgcc tgtttgacga gggatttaca ggttttaatg gccgagaaca ccaaaaagcg
     5401 acaggatttg gattgtatct gaccaagcgg gtcctgaatc agttggaact agctatttcc
     5461 gtggaaagtc aactggaagt tgggaccagc gtaaccatca caaaagtaca gtaga
//
LOCUS       DASGBY010000124         5400 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.124, whole genome shotgun sequence.
ACCESSION   DASGBY010000124 DASGBY010000000
VERSION     DASGBY010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5400
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.124"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            236..1784
                     /locus_tag="U1396_001699"
     rRNA            236..1784
                     /locus_tag="U1396_001699"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            1838..1910
                     /locus_tag="U1396_001700"
     tRNA            1838..1910
                     /locus_tag="U1396_001700"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1871..1873,aa:Ala,seq:tgc)
     gene            2213..5116
                     /locus_tag="U1396_001701"
     rRNA            2213..5116
                     /locus_tag="U1396_001701"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            5305..>5400
                     /gene="rrf"
                     /locus_tag="U1396_001702"
     rRNA            5305..>5400
                     /gene="rrf"
                     /locus_tag="U1396_001702"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         1534 a         1106 c         1540 g         1220 t
ORIGIN      
        1 tcttgaggga ctggttaaca gaggaacgaa aaaaagtttc aaaaaagtgt tgacaaagtt
       61 cacaagaaat gataaactaa gatagttgtc gcgagaacgt gataacgaca agacctttga
      121 aaattaaaga agacgaacca aacgtgcagg gtgatttatc taaggataaa tcgtcaatga
      181 caaaacaaaa caataaaacg gaaagctagc aatagcttga gtttgaatca aaacttttta
      241 tgagagtttg atcctggctc aggacgaacg ctggcggcgt gcctaataca tgcaagtaga
      301 acgctgaagt ctggtgcttg cactagacgg atgagttgcg aacgggtgag taacgcgtag
      361 gtaacctgcc tcatagcggg ggataactat tggaaacgat agctaatacc gcataacagt
      421 atttaccgca tggtagatgc ttgaaaggag caactgcttc actatgagat ggacctgcgt
      481 tgtattagct agttggtgag gtaacggctc accaaggctt cgatacatag ccgacctgag
      541 agggtgatcg gccacactgg gactgagaca cggcccagac tcctacggga ggcagcagta
      601 gggaatcttc ggcaatgggg gcaaccctga ccgagcaacg ccgcgtgagt gaagaaggtt
      661 ttcggatcgt aaagctctgt tgtaagagaa gaactgtgag aagagtggaa agtttctcac
      721 ttgacggtat cttaccagaa agggacggct aactacgtgc cagcagccgc ggtaatacgt
      781 aggtcccgag cgttgtccgg atttattggg cgtaaagcga gcgcaggcgg tttgataagt
      841 ctgaagtaaa aggctgtggc ttaaccatag tacgctttgg aaactgtcaa acttgagtgc
      901 agaaggggag agtggaattc catgtgtagc ggtgaaatgc gtagatatat ggaggaacac
      961 cggtggcgaa agcggctctc tggtctgtaa ctgacgctga ggctcgaaag cgtggggagc
     1021 gaacaggatt agataccctg gtagtccacg ccgtaaacga tgagtgctag gtgttgggtc
     1081 ctttccggga ctcagtgccg cagctaacgc attaagcact ccgcctgggg agtacgaccg
     1141 caaggttgaa actcaaagga attgacgggg gcccgcacaa gcggtggagc atgtggttta
     1201 attcgaagca acgcgaagaa ccttaccagg tcttgacatc ccgatgaccg ccctagagat
     1261 ggggtttctc ttcggagcat cggtgacagg tggtgcatgg ttgtcgtcag ctcgtgtcgt
     1321 gagatgttgg gttaagtccc gcaacgagcg caacccctat tgttagttgc catcattcag
     1381 ttgggcactc tagcgagact gccggtaata aaccggagga aggtggggat gacgtcaaat
     1441 catcatgccc cttatgacct gggctacaca cgtgctacaa tggctggtac aacgagtcgc
     1501 aagtcggtga cggcaagcta atctcttaaa gccagtctca gttcggattg taggctgcaa
     1561 ctcgcctaca tgaagtcgga atcgctagta atcgcggatc agcacgccgc ggtgaatacg
     1621 ttcccgggcc ttgtacacac cgcccgtcac accacgagag tttgtaacac ccgaagtcgg
     1681 tgaggtaacc ttttaggagc cagccgccta aggtgggata gatgattggg gtgaagtcgt
     1741 aacaaggtag ccgtatcgga aggtgcggct ggatcacctc ctttctaagg aaatggaaac
     1801 ctgtacgtca gtcttcttta attttgagag gtcttgtggg gccttagctc agctgggaga
     1861 gcgcctgctt tgcacgcagg aggtcagcgg ttcgatcccg ctaggctcca ttaggataga
     1921 aatcctacta aactgaataa cagtgaagtt gaattcacga ctaacttctt aggaaaatag
     1981 ataatcttcc ttgtgtgcaa gacacacaat gtcagattcc taattttcta cagaagtttc
     2041 gcagaagcga ccgtcgttca tatcctaaac ttgtccattg aaaattgaat atctatcaaa
     2101 cattcctaaa cgtatgtaaa aatacgtata gaaatagtaa caagaaaata aaccgaaaac
     2161 gctgtgaata tttaatgagt tttctaattt ttgaaaaaaa ttaggttaat aaggttaagt
     2221 taataagggc gcacggtgga tgccttggca ctagaagccg atgaaggacg tgactaacga
     2281 cgaaatgcct tggggagctg taagtaagca atgatccagg gatgtccgaa tgggggaacc
     2341 cggcaggtaa tgcctgtcac tcactactgt taaggtagtg aagaggaaga cgcagtgaac
     2401 tgaaacatct aagtagctgc aggaagagaa agcaaaagcg attgccttag tagcggcgag
     2461 cgaaacggca ggagggcaaa ccgaggagtt tactcctcgg ggttgtagga ctgcaatgtg
     2521 gacttaaaga gtatagaaga actacctggg aaggtaggcc aaagagagta atagcctcgt
     2581 atttgaaata ttctttatac ctagcagtat cctgagtacg gcgagacacg cgaaatctcg
     2641 tcggaatccg ggaggaccat ctcccaaccc taaatactct ctagtgaccg atagtgaacc
     2701 agtaccgtga gggaaaggtg aaaagtaccc cggaagggga gtgaaataga acctgaaacc
     2761 gtgtgcctac aacaagttcg agcccgttaa tgggtgagag cgtgcctttt gtagaatgaa
     2821 ccggcgagtt acgatatgat gcgaggttaa gttgaagaga cggagccgta gggaaaccga
     2881 gtcttaatag ggcggattag tattatgtcg tagacccgaa accatgtgac ctacccatga
     2941 gcaggttgaa ggtgcggtaa gacgcactgg aggaccgaac cagggcacgt tgaaaagtgc
     3001 ttggatgact tgtgggtagc ggagaaattc caaacgaact tggagatagc tggttctctc
     3061 cgaaatagct ttagggctag cgtcgacatt tgagaatctt ggaggtagag cactgtttgg
     3121 atgagggggc catctcggtt tactgatttc agataaactc cgaatgccaa tgatttatgg
     3181 tcggcagtca gactgcgagt gctaagatcc gtagtcgaaa gggaaacagc ccagaccacc
     3241 agctaaggtc ccaaaataat tgttaagtgg aaaaggatgt ggggttgcac agacaactag
     3301 gatgttagct tagaagcagc tattcattca aagagtgcgt aatagctcac tagtcgagtg
     3361 accctgcgcc gaaaatgtac cggggctaaa acaatttacc gaagctgtgg ataacacttt
     3421 agtgttatgg taggagagcg ttctatgtgt gaagaaggta taccgtgagg agtgctggaa
     3481 cgcatagaag tgagaatgcc ggtatgagta gcgaaagatg ggtgagaatc ccatccaccg
     3541 taagactaag gtttccaggg gaaggctcgt ccgccctggg ttagtcggga cctaaggaga
     3601 gaccgaaggg tgtatccgat ggacaacagg ttgatattcc tgtactagag tatgaagtga
     3661 tggagggacg cagtaggcta actaaagcgg gcgattggaa gtgcccgtct aagcagtgag
     3721 gtgtgatatg agtcaaatgc ttgtatctgt aacattgagc tgtgatgggg agtgaagtta
     3781 agtagcgaag ttagtgacgt cacactgccg agaaaagctt ctagcgatgt atcatactct
     3841 acccgtaccg caaaccgaca caggtagtcg aggcgagtag cctcaggtga gcgagagaac
     3901 tctcgttaag gaactcggca aaatgacccc gtaacttcgg gagaaggggt gctggcttaa
     3961 agtcagccgc agtgaatagg cccaagcaac tgtttatcaa aaacacagct ctctgctaaa
     4021 tcgtaagatg atgtataggg ggtgacgcct gcccggtgct ggaaggttaa gaggagggtt
     4081 tagcgcaagc gaagatctga attgaagccc cagtaaacgg cggccgtaac tataacggtc
     4141 ctaaggtagc gaaattcctt gtcgggtaag ttccgacccg cacgaaaggc gtaatgattt
     4201 gggcactgtc tcaacgagag actcggtgaa attttagtac ctgtgaagat gcaggttacc
     4261 cgcgacagga cggaaagacc ccatggagct ttactgcagt ttgatattga gtatctgtac
     4321 cacatgtaca ggataggtag gagcctacga agtcgggacg ccagtttcga cggaggcgct
     4381 gttgggatac tacccttgtg ttatggctac tctaacccgg ataggttatc cctatcggag
     4441 acagtgtctg acgggcagtt tgactggggc ggtcgcctcc taaaaggtaa cggaggcgcc
     4501 caaaggttcc ctcagaatgg ttggaaatca ttcgcagagt gtaaaggtat aagggagctt
     4561 gactgcgaga gctacaactc gagcagggac gaaagtcggg cttagtgatc cggtggttcc
     4621 gtatggaagg gccatcgctc aacggataaa agctaccctg gggataacag gcttatctcc
     4681 cccaagagtt cacatcgacg gggaggtttg gcacctcgat gtcggctcgt cgcatcctgg
     4741 ggctgtagtc ggtcccaagg gttgggctgt tcgcccatta aagcggcacg cgagctgggt
     4801 tcagaacgtc gtgagacagt tcggtcccta tccgtcgcgg gcgtaggaaa tttgagagga
     4861 tctgctccta gtacgagagg accagagtgg acttaccgct ggtgtaccag ttgtcttgcc
     4921 aaaggcatcg ctgggtagct atgtagggac gggataaacg ctgaaagcat ctaagtgtga
     4981 aacccacctc aagatgagat ttcccataac tttatgttag taagagccct gagagatgat
     5041 caggtagata ggttggaagt ggaagtgtgg cgacacatgt agcggaccaa tactaatcgc
     5101 tcgaggactt atccaaacta agtaacgaag gcgtcaaatc cgcctgaaaa ataggaacct
     5161 aacgcagtat gcttgcatac aaggcaggtt atcttttttc caaggattta gcccgagtac
     5221 aattactcac gagtcaatat tgacaagcga tcggtttctt gttagaatat agatattcaa
     5281 ttttgagttg acaagactca ttagttaagt gacgatagcc taggagatac acctgtaccc
     5341 atgccgaaca cagcagttaa gccctagaac gcctgaagta gttgggggtt gccccctgtt
//
LOCUS       DASGBY010000125         5369 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.125, whole genome shotgun sequence.
ACCESSION   DASGBY010000125 DASGBY010000000
VERSION     DASGBY010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5369
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.125"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(128..859)
                     /locus_tag="U1396_001703"
     CDS             complement(128..859)
                     /locus_tag="U1396_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5342871.1"
                     /translation="MVSQTVEKPLYLQLVDELEVAIRERMAPNDKLFSERELTQVYGV
                     SRITVRLALQELEKRGLVYKKHGKGTYVSEISDTAVDLSQAYSFTEQMKKIGKVPRTS
                     ILSFELVKASDYIAQHLQLSQGEEVFEVERLRLADEVPMMLERTYVPASLFPGLAAQR
                     MKSTPLYEIFSEDYHQVIRLAEEEFYASIALDNEAKILGIPSNSPVLHLVRKTYNDKN
                     RIIEFTFSIARADQFRYKITHQRGY"
     gene            complement(959..1276)
                     /locus_tag="U1396_001704"
     CDS             complement(959..1276)
                     /locus_tag="U1396_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF960 domain-containing protein"
                     /protein_id="HEM5342872.1"
                     /translation="MAFEQTNGRYASFGVVTSLPGEVIDSFWYVIDHYLKGVIPLKSV
                     IRFSIKNRRGKITLVFSQEGYKNVLAVDLSSRFDPFYPSTILVMDKQGKETITLPDEV
                     TLL"
     gene            complement(1334..1867)
                     /locus_tag="U1396_001705"
     CDS             complement(1334..1867)
                     /locus_tag="U1396_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000775318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEM5342873.1"
                     /translation="MKLPKEGDFITIQSYKHDGEIHRTWRDTMVLKTTENAIIGVNNH
                     TLVTENDGRRWVTREPAIVYFHKKYWFNIIAMIRENGVSYYCNLASPYVLDNEALKYI
                     DYDLDVKVFADGEKRLLDVDEYERHRKAMKYSDDIDFILKENVKILVDWINNQRGPFS
                     PAYVNIWYKRYLELRSR"
     gene            complement(1943..2719)
                     /gene="recX"
                     /locus_tag="U1396_001706"
     CDS             complement(1943..2719)
                     /gene="recX"
                     /locus_tag="U1396_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEM5342874.1"
                     /translation="MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQ
                     EFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYLKKYEIEENNIVKIVMVLEEEKW
                     LDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
                     LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLSQLELVADEENEDDLIAKELDK
                     QYRKYSRKYEGYELKQRLIQALARKGYDFDRIQAVLRDYL"
     gene            2757..4109
                     /gene="rlmD"
                     /locus_tag="U1396_001707"
     CDS             2757..4109
                     /gene="rlmD"
                     /locus_tag="U1396_001707"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM5342875.1"
                     /translation="MNLQVNQRIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEEIFC
                     QITSVKRNFVEAKLLKINKESKFRVKPACDIYQACGGCQIMHLRYDKQLDFKQDLLQQ
                     ALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSFKDQVKAGLYAENSHRLIGIT
                     NCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVMVRKARKTGQVQVIFITSC
                     QVNLIKLIDELTSQFPSIITIALNWNRQKTSDIYGEKTEILWGEQAIDEAVLDYEFSL
                     SPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGVGTIGFAFAKKVKSVRGMDI
                     IPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQEGYRADALVVDPPRTGLDEKLL
                     KTILDYKPAKMVYVSCNVSTLARDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK
                     "
     gene            complement(4489..5303)
                     /locus_tag="U1396_001708"
                     /pseudo
     CDS             complement(4489..5303)
                     /locus_tag="U1396_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT         1683 a         1178 c          886 g         1622 t
ORIGIN      
        1 taacgtccgc gtttttttca tacccaataa caatcaaaag tagcctagga aacgaaggcg
       61 aagatagaac tggatttcat caaggctctt gacaacgaat agttttgatt ttcgaagagt
      121 attgattcta atatccccgt tgatgggtaa tcttgtaacg aaactggtcc gctctagcaa
      181 tactaaacgt aaactcgata attctattct tatcattata cgtttttctt accaaatgaa
      241 gcactggact attgcttgga attccgagta tcttagcttc attatccaaa gcaatacttg
      301 catagaactc ttcttctgcc aaacgaatca cctgatgata atcctctgaa aaaatttcat
      361 acaagggagt tgacttcatt cgctgagcag ctaatccagg aaatagcgag gcaggaacat
      421 atgtcctttc caacatcatc ggaacctcat ctgcaagtct caaacgctca acttcaaaca
      481 cttcctcacc ctgactaagt tgtagatgct gcgcaatata gtccgacgcc ttaaccaatt
      541 caaaggataa aatagatgtc ctcggtactt tcccaatttt tttcatttgc tcagtaaaac
      601 tataggcctg agacaaatca actgcagtat ctgaaatctc agatacatag gttcccttac
      661 catgcttctt atagactaag ccacgttttt ccaattcttg caaagccaaa cgaactgtaa
      721 tacgactgac accataaacc tgtgtcaact cacgctctga aaataacttg tcattcggag
      781 ccatcctctc acgaattgca acttccaatt catcaaccaa ctgcaaatag agaggttttt
      841 caacagtttg actaaccata gactcctcct ttctaaccca cataagctta caaatctatt
      901 ttacaccaaa tttcatatat taacaatatc ttaggtgata aaataccagc tcttcaagct
      961 aaagcaaggt cacctcatct ggcaaagtaa tagtctcttt tccctgcttg tccattacca
     1021 agattgttga gggataaaaa ggatcaaaac gactacttag atctacagcc agtacatttt
     1081 tataaccttc ctgcgaaaag accagcgtaa tcttaccacg acgatttttg atagaaaaac
     1141 ggattacact ttttaatgga ataacccctt ttaagtagtg atcaataaca taccagaaac
     1201 tatcaatcac ttccccagga agcgaggtca caactccaaa acttgcatag cgcccatttg
     1261 tttgttcaaa ggccataagc ccctccttta caataagaaa aaagcctgta aaacaggatt
     1321 ttcttttcta actttatcta cttctcagtt ctaaatagcg tttgtaccag atattaacgt
     1381 aagcaggaga gaatggtccg cgctggttat taatccaatc aaccagtatc ttgacatttt
     1441 ccttcaaaat aaaatcaata tcatccgaat acttcatcgc cttacgatga cgctcatatt
     1501 catccacatc cagcagtctc ttttcaccat cagcaaagac cttaacatct aggtcataat
     1561 caatgtattt gagtgcctca ttgtcgagaa catatggact agcaaggtta caataatagg
     1621 aaactccgtt ttcacgaatc attgcaatga tattgaacca gtatttttta tgaaaataaa
     1681 cgattgctgg ttctcttgtt acccaacgcc taccatcatt ttcagtcact aaggtatgat
     1741 tattgactcc aataatagca ttttccgttg tttttaatac catggtgtca cgccaagtgc
     1801 gatgaatttc accgtcatgc ttataacttt gaattgtaat aaagtcgcct tcctttggta
     1861 atttcacttt gttaccaact ttctacaatt acaatttatc ttgactatta tatcatattt
     1921 ttctaaccta ggctaaattt tttcacagat aatcacgaag gacagcctga atccgatcaa
     1981 agtcataacc ctttcgagct aaagcctgta tcaacctttg cttcaattcg tagccttcat
     2041 atttacgact atattttcta tactgcttat ccaattcctt ggcaattaag tcatcttcat
     2101 tttcctcatc agccacaagt tccaactgac tcaggctttg tttggccgtc tcataagaaa
     2161 aacccttccc catcaatccc tgtacaactt tatcttgcaa agctcgaaga ggcaattttc
     2221 tttggtatct acccaccaat ttctccccaa tcttcccagc aagctctgaa aaatcttcct
     2281 ctgccagcct tttatcaatc agcggtttag gaattccttt ctgcatcaac ttctgacgaa
     2341 tcatagctgg tcccttatct ccatttagag cattctgacg gacatagcta tcaacataat
     2401 tcccatcgtc cagccatttt tcctcttcta ataccatcac aatcttgaca atattgtttt
     2461 cttcaatttc atattttttt agataatcac taacttcttt tttggtacgt tgcttgaagg
     2521 aaaggtaata aagtgctaga tttttcccat aagaaaactg agcaaaatcg cgaagctcac
     2581 gaaactcctg ctccgtgatt tcctttccct tactaagcat gaagcgaaca attgtgtctt
     2641 ccgtaatata taaactatcc tgaccatcca cttcaagtaa ataaagacgt ttcttttttt
     2701 caatttttgt aattctcatt ctttcattat acaggatttt tcggtaaaat aataatatga
     2761 atctacaagt aaaccaacga atccccttaa aaatcaaacg aatgggcatc aacggagaag
     2821 gcatcggatt ttatcaaaaa acgctagtct ttgtccctgg tgcccttaag ggagaagaaa
     2881 ttttttgtca aattacctca gtcaaacgaa atttcgttga agcaaaattg ttaaaaatca
     2941 acaaggaatc aaaattccgt gtcaagccgg cctgtgacat ctatcaagcc tgtggtggtt
     3001 gtcaaatcat gcacctccgc tatgataaac aattagactt caaacaagat ctcttgcagc
     3061 aggccctaaa aaagttcaaa ccagctggct acgaaaacta cactatttat ccaacaatcg
     3121 gtatggataa gcctagccac tatcgtgcca aattacagtt ccagactcga tctttcaaag
     3181 atcaagtcaa ggccggtctc tatgcggaaa attcccatcg cttgattgga attacgaatt
     3241 gttacgtcca agatgccgaa acacaagaga ttatcaacgg aatcgcaaag ctactcacca
     3301 agcaccgtat tcctatctat aatgagcgca agcaacacgg aatccgcacg gttatggtcc
     3361 gcaaggctcg aaaaacaggt caagttcaag tgatctttat cacctcttgt caggttaatc
     3421 ttattaaatt aattgatgaa ctcaccagtc aatttccaag tataatcact attgctctaa
     3481 actggaatag acagaaaacg agtgatattt atggtgaaaa aacagaaatt ttatggggag
     3541 aacaagctat cgatgaagct gttttagatt acgaattctc actatctcca cgggcatttt
     3601 accaattaaa tccccaacaa acagaaattc tctatggcga ggccgtcaag gctttggata
     3661 tttcaggaga tgaagacttg attgatgcct actgtggcgt gggcacaatc ggcttcgcct
     3721 ttgctaaaaa ggtcaaatct gttcgaggta tggacattat tccagaagcc attgaggatg
     3781 ctaaagcaaa cgctaagcga atgggactat ccaataccca ctatgaggca ggtaaagcag
     3841 aagaaatcat tccaaagtgg taccaagaag gctacagggc cgatgccttg gtagtcgatc
     3901 ctccacgaac tggactcgat gaaaagctcc tcaaaaccat tttggactac aaaccagcta
     3961 aaatggttta tgtatcctgc aacgtctcca ctcttgcaag ggaccttgtt gagctaagca
     4021 aagcctacaa ggtagaatac attcaatctg tcgacatgtt tcctcacaca gcacggaccg
     4081 aggcggttgt taaactaagc aaaaaataaa aggcctataa gactatgacg ggtaaaccca
     4141 ctatggtcat atagagcctt tttgagtgta gaaaaaagtc ccctacgacc tacactgata
     4201 cccatttaaa atcaaaaata gccacctacc actcaaagta gatatggagc attttgattt
     4261 tgttattttt tgagaaaaaa acagctactt gaaatccaca atcctcaact caaacttata
     4321 aattaaggtt tcacatgtta taagtagctt agacttgcta tttttgattt ttattgagta
     4381 taagtggtaa gcgcctaata acaaggtata ttgaaaaagg cttcaaagtc cagtcgactc
     4441 tggaaccttt ttctatttac atgctctctt attagacttg ttcggtaact acatcatctc
     4501 atagttgatg atgccacaaa tcaactcagc tcttaattca aaccgttttc tacgattacg
     4561 atagggctgt gccatgattt gaaaggtttt aaatttggca ttaaagtgtt caacttcaat
     4621 acggatttta gctatctctt gattcaaccg tctatccttt tgggttaagg ggtgatgttt
     4681 agaacgctta gcaggaataa aggtattttc gtgaaatttc aagataccta aataccctaa
     4741 atctacgaaa acaagggtat tttggggcaa actatagcca atactctcct taaaaagggt
     4801 aaaatcatgc gtatgaccat ctgaaaaagc caattgacaa gcacgatggc tagtcaaatc
     4861 cagcatgatt tgagttttta tggtatgtct tttcttttta ccagaataat tcttgctttg
     4921 gtttttttag ggcgttgaat aggactttca gtgacatcaa tggcaacagt ggcgctagat
     4981 gcttctaagt ggtctaaatc aaagagacct gaagaacgaa gggtgtcctc taaccatgta
     5041 atagtctcat tgacagttgc cacacctaca ccaaaatcaa atgccaacaa gcgttgagtg
     5101 gggtaatagc gtaagtagcg caaggtcatg ataagctgct cttccatact tagacggcgt
     5161 gggcatcctc cttttcggtg ttgctcttga taagcgtcag tgagacgatc aagcatcagt
     5221 tgaaacgtcg cttttttaac acctatcaac aatttgaaat tctctgagtt taattttaag
     5281 gctttttcgt atgttgtttc catagcttta gtataccact tttgagttac cgaacaagtc
     5341 taattacaaa tttattggta ttttttatt
//
LOCUS       DASGBY010000126         5232 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.126, whole genome shotgun sequence.
ACCESSION   DASGBY010000126 DASGBY010000000
VERSION     DASGBY010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5232
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.126"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..2073)
                     /locus_tag="U1396_001709"
     CDS             complement(<1..2073)
                     /locus_tag="U1396_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5342876.1"
                     /translation="MKKKTTLFALTGIILSCHLFLAGCQKTENTAINHQDVQSSNISK
                     VDENTIVVSEIKSNGYMRLYGEESYFFEGPIPYAAHFLKDTLPDSDYKLNKEDIQYQL
                     EKGYIIKVNEQYFYYPKDKDANVISISEAKKLTKNQKKPTSQAKKGVAGVDYPTDDGF
                     LFENEGQILSKTDEGLVLEHNGHSHFIFYKDLKESKWSYLVPKEYIENSQSSSHSNAK
                     QAKLSQTFDDGYVFDPKDIVAEDANGYTVRHGDHYHYIWKSSLQYGQGNTGETIGKKG
                     QITVLDNHSLHTPTTRNNFVPLKSTTEKGHTSTQSNSKKAFPGIDYPTSDGFIFDGSG
                     VQGQTALGLLIGHGTHTHLLPYSHLIGSPWESYIPTQYLETARAEYHSSTSTQVDVEI
                     PLSPQEGVKPNSSVEEEREAKKSYLAENMHVSKEKIKVIETDAGPAFVYPHGDHSHTI
                     LIEKVEVGKPIEDPHGDPHAHDKIGMATLKQLGFDDEIIEDILHATADTPFPSNETDS
                     EKMREWLKTVKYLNIGQRKDPLKRAGLDLMPNVEVLGIGFTPIDDVKPILQFKKLKQL
                     WMTSTGVKDYQFLKEIPTLEGIDLSQNGVSDLGFLEEFPNLKVVSAAGNDIEDITILA
                     KLKALESLNLDHNKVTDLSPLADLSQLTAVSLDNNRITDLSALQNKKKLTRLYISQNP
                     QLDISTLKT"
     gene            2458..3210
                     /locus_tag="U1396_001710"
     CDS             2458..3210
                     /locus_tag="U1396_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342877.1"
                     /translation="MENTSTQTFEELVAEQKKKRNRVLRIIITLFTTIIVFFACLALF
                     KYNSGNISGTWRNSQAEQDIVETSIKELQNQLPGIDKTWIDATYTMTVVDKKAVFTAT
                     TSFDIPKIAKLTLDQAYKVMLEEAQKEASSLGISVEEYLTTALGADYEKQLKSFLPTQ
                     AEAEKEFHKYQDEYAKELGATYNQETGTISATFFEGEVDQLFHTVTITKINDAAIKQL
                     TTYDISVKDIISYSRKGNTTIINGNEEFTLEK"
     gene            complement(3729..4259)
                     /locus_tag="U1396_001711"
     CDS             complement(3729..4259)
                     /locus_tag="U1396_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5342878.1"
                     /translation="MKQNQLRQLTEISLFAALICVVVFFIRIPFGSQFVHLGNALVVV
                     GVLIFGAKKGALAASLGLGIFDLLSGYASVAWITILESLIVCFVLHLFYEKFLQANDS
                     LSNIILVGIVAALTKIILNLLKYTLTGSLVGGLTPSASFLAALGRILGTYGTAITTII
                     AVPILYQVCKRLYKRK"
     gene            complement(4256..5104)
                     /locus_tag="U1396_001712"
     CDS             complement(4256..5104)
                     /locus_tag="U1396_001712"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine kinase"
                     /protein_id="HEM5342879.1"
                     /translation="MVQRLLLANDLPGVGKVALATSIPIAAACQVETMLLPTVLLSSH
                     TGGFPDVVIEDMTDLNRAYFRQWKNLNLELAGILSGYCRNPQQLSQLAMYAKQTETPL
                     IVDSVMGDGGKLYTGFTPTYVEAMKELIQSAKLILPNVTEAAFLTGRDYLGACYDRVA
                     IEDLLEALAEQVSADIVLTGISFDDRQIGVAYFQQETREITTYMSKKYPANFFGTGDI
                     LSTLLAVASIQQINLHQAIPLALDFIDKSLERTLALDRDLKFGISFEPFLAELQQAFQ
                     TLKEKL"
BASE COUNT         1685 a         1033 c          900 g         1614 t
ORIGIN      
        1 tgtttttaga gttgatatat ccaattgagg attctgtgat atatacaaac gggttaactt
       61 cttcttgttt tgaagcgcag ataaatctgt gatacgatta ttatctaaac taacagctgt
      121 caattgtgac aaatctgcta atggggataa atccgtcact ttattatgat ctaaatttaa
      181 ggattccaaa gcttttaatt tagctagaat agtgatatct tcaatgtcat ttcctgcagc
      241 agaaactact tttaagtttg gaaattcttc caaaaagccc aaatcagaaa caccattttg
      301 tgataagtca attccctcta atgttggaat ttctttcaaa aactgataat ccttaacgcc
      361 tgtgctagtc atccataatt gtttcaattt tttaaattgc aagataggtt ttacatcatc
      421 aattggcgta aaaccaatcc ctaacacttc aacatttggc atcaagtcca gaccggctct
      481 ctttagcgga tcttttcgct gaccaatatt tagatatttt accgttttta accactctct
      541 catcttctcg gaatctgttt cattagatgg gaaaggagta tcggccgtag catgcaaaat
      601 atcttcaata atctcatcat caaaacctaa ttgttttaaa gtagccattc caattttatc
      661 atgagcatgt gggtcaccgt gagggtcttc gattggtttt ccaacttcaa ctttctcaat
      721 caagattgta tgagaatggt caccatgagg gtaaacgaaa gcaggtcctg catctgtttc
      781 tatcaccttg attttttctt ttgaaacatg catgttttcg gctaggtagc tctttttagc
      841 ttctcgttct tcttctacac ttgagttagg tttcacacct tcttgtggtg acaacggaat
      901 ttctacatca acttgagtgg aagttgacga atgatattct gctctagcag tctctaaata
      961 ctgagtagga atataagact cccacggact tcctatcaaa tgactgtacg gaagtaaatg
     1021 agtatgcgta ccatggccaa tgagtaaccc taacgctgtt tgaccttgaa ctccactacc
     1081 atcaaaaatg aaaccgtcgc ttgttggata atcaatacct gggaaagctt tttttgaatt
     1141 agactgagtg gaagtatgcc ctttttctgt ggtagacttg agtgggacga aattatttct
     1201 tgtggtcgga gtatgcaacg aatgattatc aagaacagta atctgtccct tttttccaat
     1261 ggtctcccca gtatttcctt gtccgtattg caaacttgat ttccaaatat aatgataatg
     1321 atctccatga cgtaccgtat agccattcgc atcttcagcc actatatcct tcggatcaaa
     1381 tacataacca tcatcaaaag tttgtgatag cttcgcttgc tttgcgttgg aatgcgagct
     1441 ggattggcta ttctcaatgt actctttggg taccagatag gaccatttgc tttcttttaa
     1501 atccttatag aaaataaaat gtgaatgacc attatgttct aagaccagtc cctcatccgt
     1561 ttttgaaaga atttgacctt cattttcaaa aagaaatcca tcatccgtag gataatcaac
     1621 accagctacc ccttttttag cttgagaagt aggtttcttt tgatttttgg tgagtttctt
     1681 agcttcagaa atagaaatta cattagcatc tttatccttg ggatagtaga agtactgctc
     1741 atttactttt ataatataac ctttctctag ctgatactga atatcttctt tattcaattt
     1801 ataatcagaa tctggaaggg tatcttttaa aaagtgtgcc gcatacggga tcggaccttc
     1861 aaaaaagtat gactcttctc catatagacg catatagcca ttagatttaa tttcagacac
     1921 tacaatcgta ttttcatcta cttttgagat attgctactt tgaacatctt gatgatttat
     1981 tgcagtattc tctgtttttt ggcaacccgc caaaaaaaga tgacaagata ggataatgcc
     2041 tgtcaaggca aataaggttg ttttcttttt catttttgtc ctcctaaact cattaaccag
     2101 ttaacaatta actagtatac attttatttt tgatttttgc aagaaaaaac aactgacaat
     2161 gattgttcgt gaataaattt tccattccac gacaaacgca tgaaaaattt gttttataaa
     2221 ccatattttc acgactgctg tcagttttta gtagaaaaaa tgtaatataa tagccttgga
     2281 aatgggggta tccttgttaa agtgcaagtt ttacaaaaac ctttaaaaaa atgcatacaa
     2341 caagaaaata gttacatacc tttttcttca tgcggattgc atgtttccat ccctacgatc
     2401 attgacaaag caaacaaact atagtatatt aaaaataggg aaataaaagg agaatatatg
     2461 gaaaatacat ctactcaaac tttcgaagaa ctcgttgcgg aacagaaaaa gaaacgtaat
     2521 cgcgtcctta gaattattat cacactcttt accactatta tcgtattttt tgcctgtctt
     2581 gcattattca aatacaacag tggcaacatt agcggtacgt ggcgtaattc ccaagctgaa
     2641 caagatattg tcgaaaccag tatcaaggaa ttgcaaaatc aacttccagg tatcgataaa
     2701 acgtggattg atgcaactta tacgatgaca gtcgtagata agaaagctgt ctttaccgct
     2761 acaacaagct ttgatattcc taaaatcgca aaattaacct tggatcaagc ctataaggtg
     2821 atgttagagg aagcacaaaa agaagcaagt tctctgggaa tttccgtaga agaatactta
     2881 acaaccgctc tcggagcaga ctatgaaaag caattgaaat catttctacc tacacaagct
     2941 gaggcggaaa aagaatttca taagtaccaa gacgaatatg ctaaagaact aggtgccaca
     3001 tacaatcaag aaactggtac tatctctgct acctttttcg agggagaagt cgatcagctc
     3061 ttccataccg tgaccattac aaaaattaat gacgcagcaa tcaaacagct gactacatac
     3121 gatatttccg taaaagatat tatttcctat tctcgcaagg gaaataccac cattattaac
     3181 ggaaatgaag aatttacttt agaaaaataa taaaaaaagc tgggaaagtc atccctgatg
     3241 gttccgacct cacccacaga ataatgaaaa taaatatgaa gccctcacta gatgtataat
     3301 cttagtgagg gctttgtgct tgacgagtta atgatgttag tcatcgccag aaaaactaac
     3361 ccactctatt gattagctct aaaaaatatg caatagacat gagtataaga actagccaat
     3421 aaaaacacag atagattcaa gctgattttg atgaaataca gccgaattgt ctgtgctttt
     3481 atttttgtct ctactataga taggacaaca ttgcggcgat atttgaaaga acttgtacca
     3541 atactcaatg aaaatcaaaa gtagcctagg aaacgaagcc gaaggtagaa ctggagttat
     3601 caaggcaagt tgacaacgga taattttgat tttcgaagag tataatctcc tgtttgtttc
     3661 gccacttaca gtgtagtcct tctgaccttt ttttgcatat tgaatttaac taatgtcact
     3721 aatataaatt actttctctt atataacctt ttacatacct gataaagaat aggtacagca
     3781 atgatggtcg taattgcagt gccataggtt cctaaaatcc tacccaaagc agctaaaaat
     3841 gatgccgatg gcgttagtcc accgactaaa ctacccgtca atgtgtactt caacaggttc
     3901 aagataattt ttgtgagggc tgcaactatc ccaaccaaga taatatttga tagactatcg
     3961 tttgcctgta ggaatttctc ataaaataag tgtaggacaa aacagacaat gagtgattct
     4021 agaatggtaa tccaagcaac ggaggcatat cccgacagta aatcaaagat gcctagaccg
     4081 agtgaagctg ccagcgcccc ttttttggca ccaaagatca atactcctac taccaccaga
     4141 gcattgccta aatggacaaa ttgactccca aaaggaatgc gaataaagaa gacaaccaca
     4201 caaataaggg ctgcaaatag gctaatttct gttaattgac gcaattgatt ctgtttcata
     4261 atttctcctt taatgtttga aatgcctgct gtaattctgc tagaaaaggt tcaaaggaaa
     4321 tcccaaattt caagtctcta tccaaagcaa gggtacgctc taaactctta tcgataaaat
     4381 ctaaagctag agggatagct tgatggagat tgatttgttg gatggatgct acagccaaca
     4441 aggtagatag aatgtcacct gttccaaaga aatttgctgg atatttttta gacatatagg
     4501 tagttatttc ccttgtttcc tgctgaaaat aggctacacc tatttgtcta tcatcaaagg
     4561 aaatccctgt cagtacaata tctgcggata cctgctctgc taaagcttcc agtaagtcct
     4621 caatagccac cctatcgtag caagctccca aataatccct ccctgtcaaa aaagctgcct
     4681 ctgttacatt ggggagaatg agctttgccg actgtatcaa ctctttcatg gcttctacat
     4741 aggtaggggt gaaacctgta tacaacttcc ctccatcccc catgaccgaa tcaacaatca
     4801 atggtgtctc tgtttgttta gcatacatag ccaattgact tagttgctga ggatttctac
     4861 agtagccaga caagatgcct gccaactcca aattcaagtt cttccactgt ctaaaatagg
     4921 ctcgattcaa gtcagtcata tcttcaatga caacatctgg gaaacctcct gtgtgtgagg
     4981 ataaaagaac tgtaggtaaa agcattgttt ctacctgaca agcagccgca attgggatac
     5041 tagttgctag tgcaacctta ccaacaccag gtaagtcgtt cgcaagcaat aatcgctgaa
     5101 ccataacaac ctcctaaatt atttttctta aacaaaattg taaaggatta tcatacattt
     5161 ttcaatctta catatccaca actgtatggg gacagacagc tgaaacctta caacaccagg
     5221 ctcaaattat ta
//
LOCUS       DASGBY010000127         5049 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.128, whole genome shotgun sequence.
ACCESSION   DASGBY010000127 DASGBY010000000
VERSION     DASGBY010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5049
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.128"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            50..310
                     /locus_tag="U1396_001713"
     CDS             50..310
                     /locus_tag="U1396_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HEM5342880.1"
                     /translation="MDVKNLRKLKRIELYEIMLAQSEEIDCLRNQLEKIKTELADRRI
                     MISQSGSIAEASMKLTNIFEEAQKAADLYLYNVKNKIGDVHE"
     gene            303..893
                     /gene="lepB"
                     /locus_tag="U1396_001714"
     CDS             303..893
                     /gene="lepB"
                     /locus_tag="U1396_001714"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5342881.1"
                     /translation="MNSSNLKGKELPKTSELKELYQYERYRHTFWRTVKSTVFMLVVV
                     AAFAVLIAVLFLPILRIYGNSMKGTLNSGDIVVSVKSNDFESSDVVAFYYNNNILVKR
                     VIAEAGDWVDMDEEGNVYVNKKKLDEPYLTEKAYGQTDITFPYQVPENRIFVMGDNRQ
                     ESIDSRNNAIGTVADEQIVGKLVFKIWPLPELGWIE"
     gene            1090..5049
                     /locus_tag="U1396_001715"
                     /pseudo
     CDS             1090..5049
                     /locus_tag="U1396_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922029.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
BASE COUNT         1690 a          879 c         1085 g         1395 t
ORIGIN      
        1 gtgccttaac ttaattttat aatattttag taaaagagag gaaacgcaga tggatgtaaa
       61 aaatcttcgg aaattaaagc gaattgagtt atatgagatt atgttggctc aaagtgaaga
      121 gattgattgc ttgagaaatc aacttgagaa gattaaaaca gagttggctg atagaagaat
      181 tatgattagt caatctggct ccatagcgga agcttcaatg aaactgacta atatttttga
      241 agaagcgcaa aaagctgcgg atctatatct ctataatgtg aaaaacaaaa ttggtgatgt
      301 tcatgaatag ttcaaatctc aagggaaagg aacttccaaa aacttcagaa ttaaaagagc
      361 tatatcagta tgaaagatat agacatacat tttggaggac agtgaaaagt actgtattta
      421 tgcttgtagt tgtagctgct tttgctgtgc tgattgctgt cctttttctt cccattctaa
      481 ggatttacgg gaactcaatg aaagggaccc tgaacagtgg ggacatcgtt gtgtccgtaa
      541 aaagtaatga ttttgaaagc agtgatgtcg tcgcctttta ttacaataac aatattctgg
      601 tcaagcgcgt cattgctgaa gctggggatt gggtggatat ggatgaagaa ggcaatgtat
      661 atgtgaataa gaaaaaactg gacgagcctt atcttactga aaaagcttat ggtcaaacag
      721 acatcacctt tccttatcag gttccagaaa atcgaatttt tgtcatggga gacaaccgtc
      781 aagaatcaat tgattcaagg aacaacgcga ttggaacagt tgctgatgag cagattgttg
      841 gaaagttggt atttaagatt tggccactgc ctgaattggg atggattgaa taaatgaaag
      901 tgaaaaaata gaaaggagga tcttgtgaga gactggttaa atttagaaaa aatccaaggt
      961 tggcgacgaa agtacaagaa gctcgtgaat atcattgctt tcctcgtagt atttgcaacg
     1021 acctatgctt tgattctacc cgctatcaca ttagaccaag aaaaggctga acaaactgct
     1081 gggattgaag tgcaagaaac accagtaaca acggaaatta gtaaattaac agaaccgatg
     1141 gtgacaactc agcaaactcc gatagtgggt agctctgctg atgaagttca atctcctgcg
     1201 acagaagcgg ttcctgaccc tgctgagcaa gtgtcaacag agtctgctag caaaccccag
     1261 accgaccaag aacggattac tgagccaact accatagttc acaaaacgaa tgattatgag
     1321 gtgactgcaa catttgatgc gagtgctcaa tttcccaaag atgttgagtt taatgttaga
     1381 gaactagata gccaatcaga agaatatcgg acacattatg aaaaaaccaa ggagaagctt
     1441 ggagtaaaaa acttgtatat gcccgattct ttgatattca tttttcatca cagggccaag
     1501 aggtcgagcc tgctgcccct ataaagatta cgattagaaa caaggaatta gttcaacggc
     1561 cagatgatag taaactgaaa attgtccact ttgaagagaa tagccaaata gaagttttag
     1621 aggccgaaac gaaggaaaat gaacaacaaa tctccgagat cagttttgac gctagccatt
     1681 tttctgttta tggagatatt ttagcaaact attataccgt caaatttacc tacactgaca
     1741 cagcgggtca agaacaagtc attacgagtt tgattgataa gactgtgggg acttcacttg
     1801 gtagtttgcc tgaagctcct tttaaaaacg gttatgtatt ttctcattgg attaataaag
     1861 atactggtga tcggattgat gaaaatacgg tgataactgg agacctgact gctgtagcag
     1921 tatttaataa tatcaatatc tacaccattg atgtcacgta tttctaccac aatgtttcta
     1981 aaaaccaaga tattacgatt gataaggaaa cggtgcaact ggaagcaagt gatgctccat
     2041 atcaactgac accacctgct tctactgagg tgagcaacaa agaggataca actttaccag
     2101 cagatgctat ttactaccct gaaaaaccac ttcttgagtt tacagcagat caactagagc
     2161 gactggacgt agcagatgga gtggatgata atcatattag cgaaagagta caatatgttc
     2221 cttacaatgc agagtatgat gtcatttata ggctaaagaa tttgacgggg tcaggttatt
     2281 ctgatatcca gactgttcat gtccgtgggg tactgggttc aactgttaca ccgcaaattc
     2341 taacctacaa ctatgctgac tttgaacgtg ctgatacagc aaagattgag aatactagcg
     2401 gccaaaaatt gtatgtttat tatacacgga aaacctttac tctttcttat aattccaatg
     2461 gcggtagtaa tattccccaa caacagggtc tatacgatag ccagattaag atttctacaa
     2521 ctactccaac aaaagagggg tatacatttg aaggttggta tgataatcct ggactgactg
     2581 gaaacaagat tacaggctct ctcaccttaa agaaagatac aactttgtat gcgaagtgga
     2641 caccgaacag ggttcgctac atcattgggt attacaagga agtctatgac aacaacactg
     2701 gaacaacctc ctatgtatat gatagttcgg cagctggttg gggtctggtt gggactactg
     2761 taaaaggaac agattcaaat attggacctc ctccgccaac ccaaacaacc attggcagca
     2821 ttggctacga gaaggatgtt actaaaagtg ctgcttcaag tattgaaatt gcagctgatg
     2881 gaacatctgt tttgaaagtt tactataaac tgaagcgcta cacttttgaa tttttcttaa
     2941 atgataacaa tgccaatatc accataaatg gtaagaccta ctctgatagg aataggtaca
     3001 tgatacgtga tgttgtgctt ggtcaagatg tctcaaagtt atggccagct tctataacaa
     3061 atcctaaaga agtatacgat gataaagtct actatgatag ctatggtagg ccgataagat
     3121 acttttttga ctactggatt tttgggaatc tactcttcaa aacagatcgg ttcgaagttg
     3181 ttgagcctat gttgccaacg agtggaacaa ccagtaagtt cacagcatat tggaataccc
     3241 aaggtacaca ggctaacgtt gaatattggt tacaacaacc ggatggttct tataagaagt
     3301 ctgatatata tagtcaatct ttcctaaaga ctgcaggact gctaccgaaa gaaatttttg
     3361 gatattctta ttatacagat gctagtttta ctgaagcagg cattaggtat tacggaactc
     3421 aaggaaatac atatcgtttc tactataaac gccaagcctt caaaattgac tattattaca
     3481 atagtactgg gttagattca aagagtaaca ttctctttga gagtgacatc aatacagcaa
     3541 cttataatta ccaaccacca cgttctactg gagttgatgc tgattataca tggggtggat
     3601 ggtatacaga ttcgttattg acagagaagt ataactttaa taagatgcct gccaataact
     3661 tggttctcta tgctaagtgg attgctccaa aatttaaggt tacttttgat atcaacggtg
     3721 gtaatggaac tgcccctgtc gatcaaagtg ttgaaaaata caaatacgct aaggcccctg
     3781 ctgatccaac gagggaacat tacaatttcc ttggttggtc tacagaagat gggaaactct
     3841 atagttggag cgaccaagta accaaggatg tcaaattgac tgcgaagtgg gaattgaaac
     3901 cattaactta tactgttcgc tatcttgaag caggtacaaa tacgcaattg gctgctgata
     3961 aagtgattac gagtccagcg cttgtattga atcaagctat cacagaaaag gcattgggaa
     4021 ttacaggtta tcgaccagat aagagtagtc aaacaattaa cctgaatttt agagggaacg
     4081 aaataacttt ctactataca ccgaaggtaa aagatgttgt ttacaccatc aagtatgtct
     4141 tgaaggataa cccagctatt gaggtagcac ctacagttac tcgtaaggtt gatggaagta
     4201 tcatccgtgc gaaagaagct gctgcagatg tgaataaaca gcatttgcag agtcagtctg
     4261 gtgttactgc tgaaatgctg gaaatggatt actatccaac tgtaaatact caaagtttga
     4321 ttctaacttc taatgatgca aataatgtga ttgtttttga atatgtcgga ttcgatactc
     4381 aaacctttac ggtaaattat ttggatatgg atggtaagaa aatcgatggt caagaaccat
     4441 tggtagttta ccgaaagaaa ccaggtagtt tcgtggtaga tcataagact ataaatggtt
     4501 atacctatga tcattcgtta gacagtgaga atgcagctga taagacagta taccgtgtaa
     4561 gtaagggtgg tcacataacc attgatctct attataagaa aaacctaaca ctgaccgcat
     4621 tagataagtc caaagtttat gatggcactg ccctatcaag ttcgggtcta tctgatctaa
     4681 accctgctta cagtgtagac ctgaaagcag gagacaaatt agttgccatc ggctatgatg
     4741 gtagccaaac caatgcgggt agcagcgcaa cgacacctaa acttgctaac atcagcaatg
     4801 ctcttggtgc tgaccggacg aatttctatc acataaccta tcaagcgggt aacttgagag
     4861 ttgaccaaca gccagtcgtg gttgtcatca acggtgaaaa gaaatcgaaa atctatgatg
     4921 gtaaagcgga agcggttggt tataaggtga tggagataag agatacaagt ggtctctata
     4981 aagaaacaga tatccatttt aatggttcaa gttcagagca gtcggtcaag aaaaaagatg
     5041 caggaattt
//
LOCUS       DASGBY010000128         5017 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.129, whole genome shotgun sequence.
ACCESSION   DASGBY010000128 DASGBY010000000
VERSION     DASGBY010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.129"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            31..744
                     /locus_tag="U1396_001716"
     CDS             31..744
                     /locus_tag="U1396_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001107589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5342882.1"
                     /translation="MAKNSPQDIKNREYFSANLNRIMKEKGVRQIDIHNDLDIPKSTI
                     TGYVKGRSLPTSGNLQKLADYLNVKKSDLDSRFSNNDVYKEFLLMLEKQLEEKKYLVN
                     SVSKEKIFQKVKERERRDKELIERVKGMNRSVKPEEFLSTITESLEEYNPKNDYGLLM
                     DLALKTSSILFWLDIVFQKRTSEFYIVFEDKNFNENYYTHFYEKINVLFEEIKAAALE
                     EARKDKNDFEDYKLTWGLD"
     gene            1108..1938
                     /locus_tag="U1396_001717"
     CDS             1108..1938
                     /locus_tag="U1396_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HEM5342883.1"
                     /translation="MVKINANGKEITLLSTNTDYVSLTDIAKYRNPDAPADIIKNWMR
                     SRNTIEFLGAWEKINNENFKLVEFDQFRSEAGLNGFVLSPQKWIKETNAIGITSQSGR
                     YGGTFAHSDIAFEFASWLSPEFKLYIIQDYQRLKQEEAYKNQLDWQVNRYISKLNYTI
                     QTDAIKENIVPTLQPYQISFAYSSEADLINVALFGMTAKEFKNAYPDREGNQRDNATI
                     EQLLVLNNLQSLNAEMIKQGLSQSNRLTELNRIAKEQLDVLYKNNQKALDSLKRLSDK
                     "
     gene            2103..3275
                     /locus_tag="U1396_001718"
     CDS             2103..3275
                     /locus_tag="U1396_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000605383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5342884.1"
                     /translation="MIMKITEVKKKNGATVYRASVYLGIDAITGKKVKTNVTGRTKKE
                     VKNKTQQAIATFKTDGATRYQNATITSYKELAELWWNSYKHTVKPNTRGNIRGLLKNH
                     VIPLFGAYKLDKLTTPLLQSIVIKLADKANTGEAGAYLHYDKIHALNKRILQYGVVMQ
                     VLPYNPAREVILPRNAKKATRKKVKHFNDEQLKQFLGYLDGLDLTNYRNLYEATLYKF
                     LLATGCRINEVLALHWSDIDLNNATVSITKTLNRYGSINSPKSNASIRDINIDSQTVA
                     MMKEYRRRQIQEAWTLGRSETVVFSDFIHDYPEDKTLGNRLTTRLRNIGLPNIGFHGF
                     RHTHASLLLNSGIPYKELQHRLGHSRISITMDIYSHLSKENAKNAVAFYEKALGNL"
     gene            3413..3796
                     /gene="yaaA"
                     /locus_tag="U1396_001719"
     CDS             3413..3796
                     /gene="yaaA"
                     /locus_tag="U1396_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HEM5342885.1"
                     /translation="MEFKLFDDYITLQALLKTTGILHSGGAIKGFLEENTILFNGEDE
                     KRRGKKIRVGDVITLPDHNTSITIVAPSAEEIKQHQEDQAEKERVAAIVKKLNQENKK
                     NKKQVKTPKKATKNTERKPVRFPGM"
     gene            3799..4893
                     /gene="recF"
                     /locus_tag="U1396_001720"
     CDS             3799..4893
                     /gene="recF"
                     /locus_tag="U1396_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEM5342886.1"
                     /translation="MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIY
                     VLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQA
                     KLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
                     NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREEL
                     TIEYQTSIKLTDDVNLIDKFLTELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYG
                     SQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDTIQTF
                     ITTTSLDHLHKLPDSLKIFHIESGKVTESE"
BASE COUNT         1801 a          984 c          936 g         1296 t
ORIGIN      
        1 atagataaat gttgaaacgg aggggattac atggcaaaga atagcccaca ggatataaaa
       61 aatagagaat atttttctgc taacctcaat agaattatga aagaaaaagg agttcggcaa
      121 atagatattc ataatgatct agatatacca aaaagtacaa tcacagggta cgttaaagga
      181 cgttcgttgc caacgtcagg aaatttacaa aaacttgctg attatctcaa tgtaaaaaag
      241 tcggaccttg attctcgctt ctcaaacaat gatgtctata aagaatttct gttaatgctt
      301 gaaaagcaat tggaagaaaa aaaatacctt gtaaatagcg tgtcaaaaga aaaaattttt
      361 caaaaggtaa aagaaagaga acgtagagac aaagaattaa ttgaacgcgt taaaggtatg
      421 aatcgctctg tgaaacctga agagtttctt agcactataa ctgaatcgtt ggaagaatat
      481 aaccccaaaa atgactatgg tttacttatg gaccttgctt tgaaaacgag tagcatactt
      541 ttttggcttg atatagtatt tcaaaaaaga acgagtgagt tttatatagt ttttgaagat
      601 aaaaacttca acgaaaatta ctatactcat ttttatgaaa aaattaatgt tttatttgaa
      661 gagataaagg ctgctgcttt agaagaagct agaaaagata aaaatgattt tgaagattat
      721 aagttaacgt ggggattaga ctaaccgccc acgctcccta cacgccccct caccacgttc
      781 aaacacttct cgggtatatt taccctgcca agctattcca cgcgcccagg ggctttctag
      841 tggactgtgt ggagtgaaaa aaagtccgca ttaaaaaaag tcagttttta tcagtagatg
      901 aaaaagtaag gttttgtaag gttgtatatt ttagcaacct caataaacct caacttctat
      961 attagttgta tattagcatt tgttagcaat ctgcgcgtgc tttcctcgtg cttcagcaag
     1021 tccgctgact tagtaaaggt tatacctatc aattttgttg acgccaacaa aactgtaaat
     1081 cctataacaa ttttagaaag gctcataatg gttaaaatta acgcaaatgg taaagaaata
     1141 actttacttt ccacaaatac tgattatgtc agtctgacag atatcgctaa atatcgaaat
     1201 ccagacgctc cagccgatat tattaaaaac tggatgagga gtagaaatac tattgaattc
     1261 ctaggagctt gggaaaaaat aaataatgaa aattttaaac tggtcgaatt cgaccagttt
     1321 agaagcgagg ctggattaaa tggcttcgta ctatctccgc aaaaatggat aaaagagaca
     1381 aatgccattg gtataacttc ccaatctggc cgatacggcg gtacattcgc ccactctgat
     1441 atagcttttg aatttgcttc ctggctttca ccagagttta agctttatat cattcaagat
     1501 tatcagcgcc taaaacaaga agaagcctac aaaaaccagt tagattggca ggtaaaccgc
     1561 tatatttcaa aacttaatta caccatacaa acggacgcta tcaaagaaaa cattgtgcca
     1621 actctccagc cctatcaaat ttctttcgcc tattcctctg aagctgattt aataaacgtc
     1681 gctttatttg gtatgactgc aaaggaattc aagaacgcct atcctgatag agaaggtaat
     1741 cagcgagata atgccactat tgaacagcta ttagttctaa ataacttaca aagtcttaac
     1801 gctgaaatga ttaaacaagg actatcacaa agcaaccgac taactgaact aaacagaatt
     1861 gctaaagaac agctagacgt gctatataaa aacaatcaga aggcccttga tagcctcaaa
     1921 agattgagcg ataaataagc ccatataaga gtcatagcac cactttaaaa cgtaaccata
     1981 taaattatca tcttacccga aacaaacgaa aatagggcta ttctcgtaag cctacgcatg
     2041 atataaacct aaaacattct aaaatctttt taataacagc ttgcctgctg atggaaaggt
     2101 ttatgatcat gaaaataact gaagtaaaaa agaaaaacgg tgctactgtg taccgtgcca
     2161 gtgtttatct aggaatagat gccatcactg gtaagaaagt caagactaat gtcacgggta
     2221 ggaccaagaa ggaggttaaa aacaaaactc agcaagctat tgcaactttt aaaacagacg
     2281 gggcaacacg ctaccaaaat gccaccataa ccagttacaa agagttggca gaattgtggt
     2341 ggaatagcta taagcacaca gtaaaaccaa atacccgtgg aaacatcagg ggcttactga
     2401 aaaatcatgt tataccactt tttggagcct ataagctcga taaactgacg accccactcc
     2461 tccaaagcat cgtcatcaaa ttagcagaca aagcaaatac aggggaagct ggtgcctatc
     2521 tgcactatga caaaatccac gcgctgaaca aacgtatatt gcaatacggt gttgttatgc
     2581 aagttctgcc atacaatcca gctcgggaag tcatattgcc caggaacgca aaaaaagcca
     2641 ctcggaagaa ggtaaagcat ttcaacgacg agcagcttaa acagtttctt ggctacttgg
     2701 acggcttaga cttaaccaat tacagaaatc tgtatgaagc caccctatac aagttcttgc
     2761 tggccactgg gtgccgtatc aatgaggtgc tggcactgca ctggtcagat attgacttga
     2821 acaacgccac ggtcagcatc acgaagacac taaaccgcta tgggtcaatc aattccccca
     2881 agtcaaatgc cagcatacgc gatataaaca tcgatagcca gacagtagcc atgatgaaag
     2941 aatacagacg gcgacagata caagaggctt ggaccctcgg acgctctgaa acggttgtat
     3001 tttccgactt tatccatgac tatcctgagg ataagaccct ggggaacagg ttgaccacac
     3061 gcctgaggaa tatcggactg cctaacatcg gctttcacgg tttccgccac acccacgcta
     3121 gtctactgct taactctgga ataccctaca aggaactcca gcaccgcctt ggtcattcta
     3181 gaatatcaat aaccatggac atctatagcc acctctcaaa agagaatgca aaaaacgctg
     3241 ttgcatttta cgaaaaagct ctcgggaatc tttgagggtg aacaaaaagg tgaacaaatt
     3301 cagtttacag tactttacaa gactgtaaaa ccccttgata caactggggt ttcagcccct
     3361 aaaatcaaaa ttataccatt ttgtgatata atattctgta acgaggtgac ttatggaatt
     3421 taaattattt gatgactaca tcacattaca agcattgtta aaaacgactg gtattctcca
     3481 ttcaggaggt gccattaaag gtttcttaga agaaaatacc attcttttca atggagagga
     3541 tgaaaaaaga cgcggtaaaa aaatccgtgt cggagatgtt atcacactcc cagaccacaa
     3601 caccagcatc acaatcgtcg ctcctagtgc agaggaaatc aaacagcacc aagaggatca
     3661 agctgaaaaa gaacgtgtgg ctgcaatcgt taaaaagtta aatcaagaaa ataaaaagaa
     3721 taagaaacag gtaaaaacgc ctaaaaaagc aactaaaaat actgaaagaa aacctgttcg
     3781 tttccctggt atgtagacat gtggctagaa cgattagagt tacaacattt tcgcaattac
     3841 aaccaattag atattgagtt ccacaaaggg ctcaatgtct ttttaggcga aaacgcccaa
     3901 ggaaaaacca atattctaga atctatctat gttttagcct taacacgaag tcatcgaaca
     3961 cggacagata aggacctact acagtttcaa gaaaaggaat tatctatttc tggtttactc
     4021 catcgcacaa gcggtaaagt tccccttgac attcacttga cagacaaggg gcgagtgacc
     4081 aaggtcaacc atctcaaaca agccaagctt tccaactata tcggccacat gaatgttgtt
     4141 ctcttcgccc ctgaagattt acagctgata aaaggtgcgc ctgctttgag aagaaagttc
     4201 atcgatgtcg agctcgggca aatcaagcca ctctatctct ctgacctatc gaattataac
     4261 cacgttttaa aacaaagaaa tacttacctc aaatctacag ataagattga tgagaacttc
     4321 ctatccgtgt tagatcagca acttgctgaa tatggtagtc gtgttatcca acatcgtatt
     4381 gactttctaa agaaattaga ggaattcgga aatagaaaag ttcaagaaat atctggcaat
     4441 cgggaagaat tgacaatcga ataccaaacc tcaatcaaat tgacagatga tgtcaattta
     4501 attgacaaat tcttgacgga attggaaagg tgtcgcaaac gtgatttatt taagaaaaat
     4561 acaggagttg gaccacatcg agatgatgta gctttcttta taaatggaat gaatgcccat
     4621 tatggtagcc aaggtcagca ccgcagtctc gttctgtcac tcaaactggc tgaaattgag
     4681 ctgatgaagg aggtcacacg agaataccca attctactct tagatgatgt tatgagtgag
     4741 ctagataata atcgtcaaat caaactacta gaaactatta cagatacgat tcaaacattt
     4801 attacaacga catctttaga ccatttacat aagctacctg atagtttaaa aatcttccat
     4861 attgagtctg gtaaggttac tgagtcagaa taagattgtt tacactgttg tcaataaagt
     4921 ttacaaaaaa gtaaaaccct gccaagaggg tcttgcagca cgtagacaaa ctcctaaaaa
     4981 tataaaaaat tgaagaagtt tgcgaaagat agcaagt
//
LOCUS       DASGBY010000129         4971 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.130, whole genome shotgun sequence.
ACCESSION   DASGBY010000129 DASGBY010000000
VERSION     DASGBY010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4971
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.130"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            3..1678
                     /locus_tag="U1396_001721"
                     /pseudo
     CDS             3..1678
                     /locus_tag="U1396_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364488.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
     gene            complement(1793..2122)
                     /locus_tag="U1396_001722"
     CDS             complement(1793..2122)
                     /locus_tag="U1396_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM5342887.1"
                     /translation="MITMHLYYTGPADNARAFAQEMEASGIADRIRQQAGNTRYQYFA
                     PLDDPHSILLVDSWTDQAALDIHHASPMMQEILDLRSKYQLTVTAERYQSDETGIPER
                     DKDFLQR"
     gene            complement(2372..3286)
                     /locus_tag="U1396_001723"
     CDS             complement(2372..3286)
                     /locus_tag="U1396_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5342888.1"
                     /translation="MQPPLTDKQFKHTIDYDSRLLPYKYYHTCVMDGIPDILFHWHNE
                     FEINYVYGGTARYHIDYDYFNSQAGDIILIRPNAAHSIHPIEQRGHETDTLLFHLDML
                     GASQLDHTSMLYLQPLQTDVFKCILRIQPQDPGYAEIRQCLLTIFELVRHQPPYFELP
                     LKSRLFDFFYLLYRYRYIVRKNTDDMYRKNEKLRLLIEHIQQHYAENLTIEQLAEQMG
                     YTKTHFMTIFKQQTGTSCMEFIIQVRLRAATELLTNTLKPVLEIATEVGFNNLSNFNR
                     QFKQYYHTTPSSYRKQLRKNRTYTNFDK"
     gene            3398..4879
                     /locus_tag="U1396_001724"
     CDS             3398..4879
                     /locus_tag="U1396_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEM5342889.1"
                     /translation="MSRFPKNFLWGGAIAANQAEGAYNVDGRGLVQTDVTTGGTVNSP
                     RYTTYIDKDGKPGKYASMGHAGGHLPEGATYAVLEDHYYPNHKAVDFYHRYKEDIKLF
                     AKMGYSVFRLSISWARIFPNGDDAEPNQAGLDFYRSVFEECRKYGIEPLVSIWHFDIP
                     LNLEQRYGGWTNRKLIDFYVRYAETIFNEYKGLVKYWITFNEINNTIMFLDMFSEPKD
                     SDYQDAYQHLHHQFVASAKAVKLGHQIDPSYRFGNMICGITFYPGTCDPADILENQHK
                     WEQNIFYCSDAQAKGRYGSYANRLWKEHNVVLQMEEGDLDILAEGKVDMYTFSYYMST
                     VVTTHKVEDTVSGNFSIGAKNPYLTYSDWGWAQDPTGLQYYLEKIYDRYEIPLMVVEN
                     GLGALDTVEEDGSIHDDYRIDYHRAHVNAMADAIANGVDLIGYTTWGCIDLVSAGTGE
                     MRKRYGFIYVDMDDAGNGSLARTPKDSFYWYKKVIASNGEDVE"
BASE COUNT         1494 a          879 c         1164 g         1434 t
ORIGIN      
        1 aaatgaaaaa gattgcttat tttttactga gtttaagtct atttgttgct tgtggacaaa
       61 gtaaggaagt aacaaataca ctgtttaaga acgacatcac gaaaacaatc agtagtggtg
      121 aggtaaaggg gaaaaaggat agcacgaccg ctacgattga atggttagga atcccctatg
      181 cagcggaacc agtaggtgag ctacgttgga aggcgccaca gcctgtagaa aaatgggaag
      241 gtagttttga tgcaactgaa atcggatctc cttttataca aatctcaaaa ggggaagtag
      301 tcggttcaga aggagcgcta aatcttgatg ttgttagacc tgataatacg gaggctaatc
      361 taccagtgat tgtttttctg catggaggaa ataatcaaac aggtcatgca caagaaatca
      421 aaggaaatgg ctttgtaaat gacatcaatg ccgtttatgt ttcaatcaat tatcgcttgg
      481 gcgctcttgg tttcaatccg ttggaagcac ttaagatagg aaccgatgaa gaaaattctg
      541 ggaattatac tctcttagac attgcggcag cattggattg ggtggaagaa aacattgagg
      601 tctttggtgg tgataaggat aatgtgaccc tagcaggctt ttcagctggt ggtcgtgatg
      661 taatggcaat attaatttct ccactattta aagataaata tgataaagca atatcattta
      721 gtggaggaat gactctagca gatgaaacgg atagtcaaga tatttttgca acggcgatag
      781 caccattagt tgttgaagat ggaatcaagt ccacagaact tgaagcaaaa gaatggttgt
      841 tatctaacga ttgtcaagta gctgattatc tttatggact tcctgcggag agtttgactt
      901 cgttgatggg aaatgctggt attcgtatgt ctgtctttcc gcacctgtat aaagatgggg
      961 tagtcattcc gaaggaagga tttgatactt caaattataa tgatgtgcct cttcttttaa
     1021 taacaggaac tagtgaattt tctttattca cagctttcga tccctatttt gtaaattctg
     1081 tgacagatgg cagtctattt tcagatgctg acaaattaaa agaatttata tttactgaat
     1141 catatggtag tgctctgtat cgtctgtcta acactgtaga tagtgctaga aaattgcaag
     1201 gaacatataa atcaccaata tacattggag aaatttctta tggagataat acagagactg
     1261 ctccaaaaac agctcagttg ttgggtgcgt ttcatggcgt atttgaacct ttacttcaac
     1321 aaccatcaaa ctatgctact ttcattgtga agatttcaat tctgaaggtg ctaaacaact
     1381 aagccaacag tttaaagcat atttgaaagg atttatcaca agtagtaacc ctgaaggaga
     1441 aaaattacca caatgggaag agtggacagc tgacggcagt caggtaatga aatttgatgc
     1501 tagtttagaa aaagctaaaa ttgaaatggg tgaagattct caaactactg aggatattgt
     1561 cgcgaacctt cgagcagata gtactttatc tgcagataaa aaacaagttt taattgacaa
     1621 tgtattgaac ggtcgttggt ttagtcaacc attggatggt ttgaaagtta atgaatagtt
     1681 tattttttga tgtattaaaa aaatataaaa gtaaaaagca acacaaggtg ttgacaacgg
     1741 tcaaataaaa aataaagtgg ttggcagtgc caatcacttt tttgaatctt gtttagcgtt
     1801 gaagaaaatc cttatctcgc tcaggaatgc ctgtctcatc actctgatag cgttcagcgg
     1861 tgacagttag ctggtactta ctacgtaagt ctaggatctc ctgcatcatt ggagaagcat
     1921 ggtggatgtc caaagctgct tggtctgtcc agctatcaac caagaggatt gaatgaggat
     1981 catcgagcgg tgcaaagtat tgataacgtg tatttccagc ctgctggcga atgcggtcgg
     2041 caatgccact agcttccatt tcctgagcga aagcacgtgc attgtcagct ggtccagtgt
     2101 agtagaggtg catggtaatc atagtataag atatagaggg cgttcagcgg acacagacaa
     2161 aatataggct tttagtttac ttttagtact aggcaatgag ctgcaggcag tactgaagta
     2221 cgacaaagcg aattaacgaa gtaataaaag aaaaactaaa tgacgtagga aacagaacga
     2281 cgacgcaagc gtccagttct cgtttatctt ttgggcacag tccgtagccc gtattcagtt
     2341 caaccaaata cggaggccct agtcctttct attatttatc aaaattagta taggtcctat
     2401 tcttccgcaa ttgcttgcgg tagctgctag gggtggtatg gtagtattgt ttgaactggc
     2461 ggttgaagtt ggacaggtta ttaaagccaa cttcggtcgc aatttcaagc acaggcttga
     2521 gagtgtttgt caggagctcg gtagctgccc gcagtcggac ttggatgata aattccatac
     2581 aggaagttcc tgtttgttgc ttgaagattg tcataaaatg ggtttttgta tagcccattt
     2641 gctctgctag ctgctcgatg gtgagatttt ctgcataatg ttgttggatg tgttcaatca
     2701 acaaccgcag tttttcattt ttccgataca tatcatcggt attttttcgg acgatgtagc
     2761 ggtagcggta gagcaggtag aagaagtcaa agagtcggct cttgagaggt agctcaaagt
     2821 aaggcggctg gtgtctgacc aactcaaaaa tggtgagcag gcattgtcta atctctgcgt
     2881 agccagggtc ttggggctgg atgcgtagaa tgcacttaaa aacatctgtc tgtaagggtt
     2941 gcaggtagag catactggta tgatccagtt gagacgcccc cagcatatcc aagtgaaaga
     3001 gaagggtatc cgtttcgtgc ccccgttgct caatcggatg gatggaatgc gcagcattgg
     3061 gtcggatcag gataatatca ccagcctgac tattgaaata atcatagtcg atatggtaac
     3121 gggctgtccc tccgtaaaca tagttgattt caaattcatt gtgccaatga aagagaatgt
     3181 caggaatgcc atccatgaca caggtatggt aatacttgta gggtaacaga cgactatcgt
     3241 agtcaatggt gtgcttaaac tgtttatccg ttaatggtgg ttgcataggt tcctcctttt
     3301 cgtaggatag tatcattata gcatattatt tgagaagaaa agggtttcaa atctgtttat
     3361 actatatttg ttagaaaaaa gataagggag aaattagatg tcacgatttc caaaaaattt
     3421 cctctgggga ggagctattg cagccaacca ggcagagggt gcctataatg tggacggacg
     3481 cggtttagtc cagacagacg ttacaacagg aggaactgtc aacagccccc gctatacgac
     3541 ttacattgat aaggacggca agccaggtaa atatgcttct atggggcatg ctggcggtca
     3601 tctgccagaa ggggcgacct atgccgtcct agaagaccac tattatccaa accacaaggc
     3661 tgtggacttc taccaccgtt ataaagaaga tatcaagctc ttcgcaaaaa tgggttactc
     3721 cgttttccgc ttgtcaattt catgggcacg gattttccca aatggtgatg atgcagagcc
     3781 aaaccaagca ggtcttgatt tctatcgttc tgtttttgaa gaatgccgca aatatggcat
     3841 tgagccattg gtttccattt ggcacttcga tatacctttg aacttggagc aacgctatgg
     3901 tggttggacc aatcgtaagt tgattgattt ctatgtccgc tatgctgaga caatttttaa
     3961 tgaatataag ggtttggtga aatactggat taccttcaat gagattaaca acactatcat
     4021 gtttttggat atgtttagtg aaccaaagga ttctgattac caagatgcct accaacactt
     4081 acatcaccaa tttgttgcct ctgccaaggc tgtaaaatta ggacatcaga ttgatccgag
     4141 ctatcgattc ggaaacatga tttgtggaat caccttctac ccaggaacct gtgaccctgc
     4201 ggatatttta gaaaatcaac acaaatggga acagaatatt ttctattgta gtgatgcaca
     4261 agccaaaggt cgttatggtt cctatgcaaa cagactgtgg aaggaacaca atgttgtatt
     4321 gcaaatggaa gagggagacc tagacatcct tgctgaaggt aaggtggata tgtatacctt
     4381 ctcttattac atgtcaacag ttgtgaccac tcataaagtg gaagacacgg tttctgggaa
     4441 cttctcaatc ggtgccaaga acccttactt gacctattca gactggggat gggcccaaga
     4501 tccaactgga ctccaatact atcttgaaaa aatctatgac cgttatgaga ttccactcat
     4561 ggttgtagaa aatggattag gagctttgga tacagttgaa gaagacggct ctattcacga
     4621 tgattaccgt attgactacc atcgtgccca tgtcaatgcc atggcagatg ccattgctaa
     4681 tggtgttgat ttgattggct ataccacttg gggctgtatt gacctagtat cagcagggac
     4741 aggtgaaatg cgaaaacgct acggctttat ctacgttgat atggatgatg ctggaaatgg
     4801 gtcacttgct agaacaccaa aagattcatt ctactggtac aagaaagtca ttgccagcaa
     4861 tggtgaggat gtagaatgag gaagacggca gtgtgccgtt tcagattgaa gaagaagtcc
     4921 attttggaca attttcttca atcttttttc tttatgatga aaattaaaaa c
//
LOCUS       DASGBY010000130         4954 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.131, whole genome shotgun sequence.
ACCESSION   DASGBY010000130 DASGBY010000000
VERSION     DASGBY010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.131"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(191..1276)
                     /locus_tag="U1396_001725"
     CDS             complement(191..1276)
                     /locus_tag="U1396_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000040814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM5342890.1"
                     /translation="MSKLHHVKSYLEANKMDLAIFSDPVSIYYLTGYHSDPHERHMML
                     FVMPDHDSLLFLPALDVERAVATVDFPVAGYMDSENPWQIIKSKLPQKSFSVICAEFD
                     NLNLTRYHGLQSIFSQPFSDITPLINTMKLIKSRDEIEKMLVAGEFADKAMQVGFNNI
                     SLNVTETDIIAQIEFEMKKQGISKMSFDTMVLTGDNAANPHGIPSTNKIENNALLLFD
                     LGVEALGYTSDMTRTVAVGKPDQFKKDIYNLTLEAHMAAVNMIKPGVTAGEIDYAARS
                     VIEKAGYGEYFNHRLGHGLGMSVHEFPSIMEGNDLVIEEGMCFSVEPGIYIPGKVGVR
                     IEDCGYVTKNGFEVFTKTPKELLYFEG"
     gene            1487..2491
                     /gene="ccpA"
                     /locus_tag="U1396_001726"
     CDS             1487..2491
                     /gene="ccpA"
                     /locus_tag="U1396_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HEM5342891.1"
                     /translation="MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLE
                     VIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLAN
                     SDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
                     SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEG
                     LVFESKYKYEEGYALAERILNAGATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITS
                     DDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK
                     "
     gene            complement(2923..4752)
                     /locus_tag="U1396_001727"
     CDS             complement(2923..4752)
                     /locus_tag="U1396_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5342892.1"
                     /translation="MNTKKWRTSLLIPGIVLFGTVALVNNVSAQEVKNTIISAKQPDG
                     RQATSKAVNVKIPAVVRLFGRELLENEFKFELREANSEKLIDTTQNTKEGQVSFKNLS
                     FNKPGEYWYTISEVKNELSGVEFDSKYIVAKITVEDRNNGQLQAMIEFIADDNVFNNF
                     YTPAPAAASLSIKKVLEGRTLNTGEFEFVLKNEKGDEIEKVSNQADGSVNFSALTFTK
                     EGTYTYTVSEVDGGLGDIIYDKSDIKATVTVKDNNHGQLVSTVTYENSDQIFENILNP
                     GKLITPTTDSVITDNEVSKEAMTDKEKGNIEPPKEQIATEEKDNIEASEKQMPSIVND
                     MVVTPEKQMTNKENDNVETSEKQMPSVMNENAVTPEKQMTNKENDNIETSEKQMPSVM
                     NENAVTPEKQMTNKEKDNIETSEKQMPSVVNENAVTPEKQMTNKENDKVVISEKQMPS
                     IVNDMVVTPQEQMANKENDEVVISEKQMPSIVNDMVVTPQEQMANKENDNVETSEKQM
                     PVNEKDNAVTPERQIANKEKENIETSKKQIPVNGNNQNGTVGENSNTKPTTEKTDKQE
                     TSTFKTETAKQILPVTGEKGSLWLLTSGIIGLAIALFTRKRKL"
BASE COUNT         1399 a          956 c          939 g         1660 t
ORIGIN      
        1 agttacacct tctcaagatt tggttagata caaataaata aagcatacga ttatgaaacc
       61 cctcggtaac ataatcgtat gcttttattt taatacttgg cttcacagca cttctatttt
      121 aatgttcttt gaagattaaa atgaacagtt gtcaacgagc tttgatgagt gaaaaaacga
      181 ttggtcccca ttacccttca aaatacagta attctttcgg agtctttgtg aatacttcaa
      241 agccattttt ggtaacgtaa ccacaatcct cgatacgaac accaactttt ccagggatgt
      301 aaatacctgg ttcgacagag aaacacatac cttcttcgat gactaaatca ttgccttcca
      361 taattgatgg gaattcatgg acactcattc ccaaaccatg accgagtcgg tggttgaagt
      421 actcgccata acctgctttt tcaatcacag agcgagcggc atagtcaatc tcaccagcag
      481 tcacaccagg cttaatcata ttgaccgcgg ccatgtgagc ctccagagtc aagttgtaaa
      541 tatctttttt aaactgatca ggtttaccga cagcgacagt ccgtgtcata tcagacgtat
      601 agcccaaagc ttccacgcct aggtcgaaca atagcagagc gttattctcg attttatttg
      661 ttgagggaat accgtgtgga tttgcggcat tgtcgcctgt taagaccatg gtgtcaaagc
      721 tcatttttga gatgccttgt ttcttcattt caaattcaat ctgagcaata atatcagttt
      781 cagttacgtt gagggagata ttgttaaaac caacctgcat agccttatcc gcaaactctc
      841 cagcaaccag cattttttca atttcatcac gcgacttgat caatttcata gtattaatca
      901 gaggtgtaat gtctgaaaat ggttggctaa agatagactg aagaccatgg tagcgggtta
      961 aattcaaatt atcaaattct gcacagatta ctgagaaaga tttctgtggc aatttgctct
     1021 tgataatctg ccatggattt tctgagtcca tatagccggc tacaggaaag tcaacagttg
     1081 caactgcacg ttctacatcc aaggcaggga gaaagagtag tgagtcgtgg tcaggcataa
     1141 caaagagcat catgtggcgc tcatgaggat cgctatgata gccagtcaga taatagatgc
     1201 taactggatc agagaagatg gccaagtcca ttttgttggc ttctaagtag gatttaacat
     1261 gatgtaattt tgacatagtg gagacctttc tagcatgtag tggtaaaaaa aagtgaaatt
     1321 ttcgtttatt atatagacta ttgtttcaaa aaatgaaaaa aattgcaagt attatcaaaa
     1381 aaatagagtt tatctcttga aagtggtttc aaaaagtgat acactatact tgagtgaaag
     1441 cgtaattttc atagaactag aactattgaa agggagtaca taacgtatgt taaacactga
     1501 cgatacggta acgatttatg acgttgcccg cgaagcaggt gtatccatgg cgacagtatc
     1561 gcgcgtggta aatgggaata aaaacgtaaa ggaaaatact cgtaaaaaag tattagaagt
     1621 catcgaccgt ttggattatc gtccgaatgc tgttgcacgt ggcttggcca gcaagaagac
     1681 taccactgtg ggggttgtga ttccaaatat tgctaatgct tattttgcaa ccttggccaa
     1741 aggtatcgat gatattgccg atatgtacaa atacaatatc gtcttagcaa acagtgatga
     1801 aaatgatgag aaagaaatca atgtggtgaa taccctattc tcaaaacagg tggacggaat
     1861 cattttcatg ggctatcatt tgacagacaa gattcgtgcg gagttttcac gctcacgtac
     1921 accgattgtt ttagctggta ccgtggactt ggagcaccaa ttacctagcg tcaatattga
     1981 ctacgctgcc gctagtgttg atgcagtcaa tctattagct aagaacaaca agaaaattgc
     2041 ctttgtatca gggccgcttg tagatgacat caacggtaaa gttcgttttg caggctacaa
     2101 acaaggcttg aaggacaacg gaatcgagtt taacgaagga ttggtttttg aatccaagta
     2161 taaatacgag gaaggctacg ctctagcaga acgtattttg aatgccggag caactgcagc
     2221 ttatgttgca gaagatgaga ttgctgctgg tttattgaat ggtgtcagtg atatgggcgt
     2281 caaggttcca gaagactttg aaatcattac aagtgatgat tccctagtga ctaagtttac
     2341 ccgtccaaac ctgacctcta tcaatcagcc actatatgat attggtgcaa ttgctatgcg
     2401 catgctcacc aaaatcatgc ataaggaaga gttggaaaac cgtgaggtag ttcttaacca
     2461 cggaatcaaa gtacggaaat caactaagtg ataaatatgg gagtagccgg ataagatatc
     2521 ttattactcc gcaccctcac tctatcaaac attataatca tttggtttat cttttattac
     2581 ttcgacgagc gaggaaatat ttccaaccta gaacagcctt taggctgttc tagcaacttg
     2641 tagctattga ggcaaacttg cttcgactta tctccagcct tcaaaggttc ggagaacctt
     2701 tgaagcgagt actaaaagca aacaaaatgg ctatactaac cgaaaactaa aagattataa
     2761 aaaataaata taaagccctc gctagatgta taagcttagc gagggctttg tggttgattt
     2821 taagtctgtc acactctgta agttgtgcga gatgttgatg cgaatctaga gaagcagtac
     2881 tgggcttgtt ctcatccttt agaactgtat cagttaggtg aattataatt tacgtttacg
     2941 tgtaaacaac gcaattgcaa gcccgataat accacttgtc aataaccata aacttccttt
     3001 ctcaccagtt actggtaaga tttgcttagc agtttcggtt ttaaatgttg aagtctcctg
     3061 cttgtctgtt ttttcagttg ttggtttagt gtttgaattt tctccgactg taccattttg
     3121 gttgttccca ttaacaggta tctgtttttt agaggtttcg atattttcct tctctttatt
     3181 agctatttgc ctttcaggtg ttacggcatt gtccttctca ttaacaggca tctgtttttc
     3241 agaggtttca acattatcgt tctctttatt agccatttgt tcttgaggtg ttacgaccat
     3301 gtcgttcaca atgcttggca tctgtttttc agagattaca acttcatcgt tctctttatt
     3361 agccatttgt tcttgaggtg ttacgaccat gtcgttcaca atgcttggca tctgtttttc
     3421 agagattaca accttatcgt tctctttatt agtcatttgc ttttcaggtg ttacggcatt
     3481 ttcgttcaca acactcggca tttgtttttc agaggtttca atattatcct tctctttatt
     3541 agtcatttgc ttttcaggtg ttacggcatt ttcgttcata acactcggca tctgtttttc
     3601 agaggtttca atattatcgt tctctttatt agtcatttgc ttttcaggtg ttacggcatt
     3661 ttcgttcata acactcggca tctgtttttc agaggtttca acattatcgt tctctttatt
     3721 agtcatttgc ttttcaggtg ttacgaccat gtcgttcaca atgcttggca tctgtttttc
     3781 agaggcttca atattatcct tctcttcagt agctatttgc tctttagggg gttcgatatt
     3841 tcccttctct ttatcggtca ttgcttcctt agagacttca ttatcagtaa taacgctatc
     3901 cgtggttggc gttattaact tcccaggatt caaaatattc tcgaagattt gatcgctatt
     3961 ttcataagtc actgttgaga ctagttgtcc gtgattgtta tctttcacag tgacagtggc
     4021 cttaatatct gatttgtcat agataatatc gccaagtcca ccatcaactt ctgaaacagt
     4081 gtaggtatag gttccctctt ttgtaaatgt tagggcacta aagtttacag aaccatctgc
     4141 ttgattgctt accttttcga tttcatcgcc tttttcattt tttaaaacaa attcgaattc
     4201 accggtgttt aaggtacgtc cctcgaggac ttttttaatc gaaagactag cagcagctgg
     4261 agcaggtgta tagaaattgt taaagacatt gtcatcagca ataaattcaa tcattgcctg
     4321 taattgtccg ttgtttcgat cttctacagt tatttttgct acaatatatt tcgaatcaaa
     4381 ctcaacacca ctaagctcat tttttacttc tgaaattgta taccaatatt cgccgggctt
     4441 attgaatgat agatttttaa aactaacttg accctctttt gtattttgag ttgtatcaat
     4501 aagtttctca ctattcgctt ctctaagctc aaatttaaat tcattttcta gaagctcacg
     4561 accaaatagt cgtactactg ctggtatttt gacattaacc gcctttgaag tagcctgtct
     4621 cccatcaggt tgttttgcgc tgatgatggt attttttact tcttgtgccg atacattatt
     4681 cactagagca acagttccaa ataatactat tcctggtatt aggagcgatg ttctccattt
     4741 cttagtattc attatccttt ttcctttctc aaagcatgat ttatgtagct aatctgtgtc
     4801 gttataacat gcaaatttta catctaaagt cctcaataaa ttttgaacgc ttagtgccag
     4861 aatgtgcacc attcataaat tataacatct tctaaaaaac attcaagctg tccttctgct
     4921 tttaaaatct gttttatctg ttttttatgt aatc
//
LOCUS       DASGBY010000131         4930 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.132, whole genome shotgun sequence.
ACCESSION   DASGBY010000131 DASGBY010000000
VERSION     DASGBY010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4930
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.132"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            28..915
                     /locus_tag="U1396_001728"
     CDS             28..915
                     /locus_tag="U1396_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM5342893.1"
                     /translation="MNNQIILLTIQVFIVALILWMLYTILSYAKKHDISLKEKFWTGF
                     GIGYVTDLLDTLGIGTFATTTTMFKLTKLVEDDRKIPATMTTAHIIPVLVEALLFITI
                     VEVDMVTLIAMAAAAFTGAFVGAKVTQKWDTKKVQRILGILLIIAACFMVYRMITNPG
                     AELTNEVKGLTGWKLAVGIAFDFMVGMLMSMGLGNYAPELIFFSLMGISPAVALPVMM
                     LNAAMIMTAGAKQFIQSGRVNWPGVPGIVVGGVLGVLTAAFFLSNLDINNLKILVVFI
                     AAYTGFTLLRSSFVTRIKK"
     gene            927..1313
                     /locus_tag="U1396_001729"
     CDS             927..1313
                     /locus_tag="U1396_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HEM5342894.1"
                     /translation="MDIHLRNEIDLDGQIEVVDQQFQVEVKEKDGNLYLIYSNDEAEK
                     VVIKCDEEELVMTRFSTPKSIMRFISGKEAIVTIPTPLGIQHFVTDTKRYQLNRSDQS
                     VQLQYELKGLENQQLFASYDLEISWK"
     gene            1523..4210
                     /locus_tag="U1396_001730"
     CDS             1523..4210
                     /locus_tag="U1396_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5342895.1"
                     /translation="MSKEQKRDLFYTQGEEQVLSSMESSLDGLSSDEASKRLADYGRN
                     ELDEGEKRTLLAKFLDQFKDLMIIILIAAAILTVITEGSHGLTDAIIILTVVILNAAF
                     GVYQEGQAEAAIEALKNMSSPVARALRDNHVVEVDSKDLVPGDIVLLEAGDVVPADMR
                     LLEANSLKIEEAALTGESVPVDKDLSAVLAEDAPIGDRVNMAYQNSNVTYGRGLGVVT
                     NTGMYTEVGHIAGMLANADETDTPLKQNLHQLSKVLTYAVLVIAAVTMAVSVFVRGEG
                     ILPALMTSVALAVAAIPEGLPAIVTVVLSLGTQVLAKRNSIIRKLPAVETLGSTEIIA
                     SDKTGTLTMNQMTVEKVYTNGQLVDAKEALDASNTTLRVMNFANDTKVDPTGKLIGDP
                     TETALVQFGLDQNFDVREVLVSEPRVAELPFDSTRKLMSTVHQQAAGNFFVAVKGAPD
                     QLLKRVTQIEENGTIRPITDADKQAILATNKDLAKQALRVLMMAYKYVDAIPELESDV
                     VENDLVFSGLVGMIDPERPEAAEAVRVAKEAGIRPIMITGDHQDTAEAIAKRLGIIDP
                     NDTEDHVFTGAELNELTDEEFQKVFKQYSVYARVSPEHKVRIVKAWQNDGKVVAMTGD
                     GVNDAPSLKTADIGIGMGITGTEVSKGASDMVLADDNFATIIVAVEEGRKVFSNIQKT
                     IQYLLSANTAEVLCIFLATLFGWDVLEPVHLLWINLVTDTLPAIALGVEPAEPGVMQH
                     KPRGRNSSFFSGGVLSSIIYQGILQTALVLGVYGFALLYPEHAGDNHAIHADALTMAY
                     VTLGLIQLVHAFNVKSVYQSIFTVGPFKNKLFNWSIVAAFLLLMATVVIPGFNTFFKV
                     SILTPTQWMVTVIGSGLMVVVVEIVKFVQRKLGLDEKAI"
     gene            complement(4336..4521)
                     /locus_tag="U1396_001731"
     CDS             complement(4336..4521)
                     /locus_tag="U1396_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342896.1"
                     /translation="MENSRYFTLHYFSLAIVPIALLFNLPTLVKTILLILALAITLLG
                     QEIFPKYIISIEKSSDH"
     gene            complement(4629..4805)
                     /locus_tag="U1396_001732"
     CDS             complement(4629..4805)
                     /locus_tag="U1396_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342897.1"
                     /translation="MRVIIHYPKTIKQLSSQKLPLLVDGKIAGTVTQGKILSLPITQP
                     SVILSIRVKDGDRV"
BASE COUNT         1366 a          920 c         1113 g         1531 t
ORIGIN      
        1 aatggaatct tttggtataa tggagaaatg aataatcaaa ttatcttatt aactattcag
       61 gtctttattg tagccctgat tctttggatg ctttacacaa ttctatccta tgctaaaaag
      121 catgatattt ctctaaaaga gaaattttgg acaggatttg gtatcggtta tgttactgat
      181 ttgctagaca ccttggggat tggaaccttt gcaacaacaa ccactatgtt taaactgaca
      241 aagttggtgg aagacgatcg taaaattcct gcgaccatga caacggcgca catcatacca
      301 gtcttagtag aggcgctatt gtttattacg atagttgagg ttgatatggt cactctgatt
      361 gctatggcag cagcggcatt tacgggtgcc tttgttggtg ccaaggtaac tcaaaaatgg
      421 gatacaaaga aagttcaacg aattcttggg attttactaa ttattgcagc ctgtttcatg
      481 gtctatcgca tgattactaa ccctggcgca gaacttacca atgaagtaaa gggcttaact
      541 ggttggaaac tggctgttgg tattgccttt gattttatgg tgggaatgct gatgagtatg
      601 ggactgggta actatgctcc tgagttaatt ttcttctcat tgatgggaat tagtccagcg
      661 gttgctcttc cagttatgat gttgaatgct gctatgatta tgacagctgg tgccaagcag
      721 tttatccaat caggacgagt aaactggcca ggagttccag gaatcgttgt cggtggggtg
      781 ctaggtgttt tgacagccgc tttcttccta tcaaatttgg atattaataa tttgaaaatt
      841 ttagttgtct tcattgcagc gtatacaggc tttactctgc ttcgttcatc ctttgttact
      901 aggattaaaa aatagtagga ggaactatgg atattcattt acgaaatgaa attgatctgg
      961 acgggcagat tgaggtagtg gatcagcaat ttcaagtgga agttaaggaa aaagatggga
     1021 atctctatct catttatagt aacgatgaag ctgaaaaagt tgtcataaaa tgtgacgaag
     1081 aagagttagt gatgacacgt ttttccactc cgaagtctat tatgcgattc atttctggta
     1141 aagaagctat tgtgaccatt cctacaccgt taggaatcca gcattttgtg accgatacaa
     1201 aacgttacca attaaaccgt tcggatcaaa gtgtccagtt gcaatatgaa ttaaagggat
     1261 tggagaacca gcagcttttt gcttcctatg atttggaaat ctcgtggaaa taatctctta
     1321 tttccagaaa aatattcttg aatttctcgg gatttttgat ataatagtta acaaatcgag
     1381 ggagtagcta gcggaaaatt ccgtgatatt gtcgtcaatc cgacttgttt ccggcaatat
     1441 attaaatagc gagacttgtt ttaataaaac aggtctcttt ttattgtaga aggtagagaa
     1501 gaggccgaaa aggagaagga aattgtcaaa agaacaaaaa cgcgatttgt tttatacaca
     1561 aggcgaagag caagtattgt caagcatgga gtcttcttta gacggtttgt ctagtgatga
     1621 ggcaagcaaa cgtctagcag actacggtcg taacgaattg gatgagggtg aaaaacgcac
     1681 actcttagct aaattcttgg atcagttcaa agacttgatg attatcattt tgattgcagc
     1741 agcaatcttg acggtgatta cagaaggttc acacggtttg acagatgcca ttatcatctt
     1801 gaccgtggtt atcttgaacg ctgcctttgg tgtttatcaa gagggtcaag ctgaggcagc
     1861 tattgaggcg ctaaaaaaca tgtcaagccc agttgcgcgt gcgcttcgtg acaatcatgt
     1921 agtcgaagtt gattctaaag acttggtacc aggtgacatc gtcttgcttg aagcaggtga
     1981 tgttgtccct gccgatatgc gtttgttgga agctaactcc ctcaaaatcg aagaagcagc
     2041 tcttacaggt gagtctgtac cagttgataa agatttgtca gcagttttgg ctgaagatgc
     2101 accaatcggt gaccgtgtca acatggctta ccaaaactct aatgttactt acggccgtgg
     2161 tcttggtgtg gttacaaata caggtatgta cacagaggtt gggcacatcg ctggcatgct
     2221 tgctaatgca gatgagactg atacaccatt gaagcaaaac ttgcaccagc tatcaaaagt
     2281 cttgacatac gcagttcttg taattgcagc ggtaacgatg gctgtttcag tattcgtacg
     2341 tggagaaggt atcttgcctg ctcttatgac ttctgtagct cttgcggttg ctgccattcc
     2401 agaaggtttg ccagctattg ttacagttgt tctttcactt ggtacacagg tcttggctaa
     2461 gcgtaattcc atcatccgta agttgcctgc tgttgaaaca cttggttcaa ctgaaatcat
     2521 cgcttcagat aaaactggta ctttgactat gaaccagatg actgttgaaa aagtttatac
     2581 aaacggtcaa ttggtggatg ctaaagaagc tttggatgca agcaatacaa cgcttcgcgt
     2641 gatgaacttt gccaacgaca caaaagttga cccaactggt aaattgatcg gtgacccaac
     2701 tgaaacggca cttgttcaat ttggtttgga tcaaaacttt gacgttcgtg aagtcttggt
     2761 atctgagcct cgtgtggctg aattgccatt tgactcaaca cgtaaattga tgtcaactgt
     2821 tcaccaacaa gctgctggaa acttctttgt agctgttaaa ggtgccccag accaattgct
     2881 caaacgtgta acgcaaattg aagaaaacgg tacaatccgt ccgattaccg atgcggataa
     2941 acaagccatt cttgccacta acaaggactt ggctaaacaa gcccttcgtg tcttgatgat
     3001 ggcatacaag tatgttgatg ctattcctga attggaatct gacgttgttg aaaacgacct
     3061 tgtcttctca ggtttggttg gtatgattga ccctgagcgt cctgaagcgg cggaagctgt
     3121 tcgtgttgct aaggaagctg gtatccgtcc aatcatgatt acgggtgacc accaagatac
     3181 agctgaggcg attgcaaaac gtcttggtat catcgatcca aatgatacag aagaccatgt
     3241 atttacaggt gcagagctca acgaattgac ggatgaagag ttccaaaaag tcttcaaaca
     3301 atattctgta tacgctcgtg tatctccaga acataaggtt cgtatcgtta aggcttggca
     3361 aaatgatggt aaggttgttg ccatgactgg tgacggtgtt aacgatgcgc catcacttaa
     3421 gactgccgac attggtatcg gtatgggtat cactggtacg gaagtttcga aaggtgcctc
     3481 tgatatggtc cttgcagatg acaactttgc aactatcatt gtggcggttg aagaaggacg
     3541 taaagtcttc tcaaacatcc aaaaaaccat ccagtatctc ttgtcagcta acactgctga
     3601 ggtattgtgt atcttccttg ctaccctctt tggttgggac gtattggagc cagttcatct
     3661 tctttggatc aatttggtaa cagatacact tccagcgatt gcccttggtg ttgaacctgc
     3721 tgaaccaggt gttatgcagc acaaacctcg tggtcgtaac tcaagcttct tctcaggtgg
     3781 tgtcttgagt tcgattatct atcaaggtat ccttcaaaca gcacttgtct tgggcgtata
     3841 tggttttgca cttctttacc cagagcatgc tggagataac catgccattc atgcggatgc
     3901 tcttacgatg gcatatgtta ctcttggatt gattcagttg gtgcatgcct tcaacgttaa
     3961 gtctgtttac caatctatct ttaccgttgg tccattcaag aacaaactct ttaactggtc
     4021 tatcgtagct gccttcttgc tcttgatggc gactgttgtg attccaggat tcaatacctt
     4081 cttcaaggta tctatcttga caccaactca gtggatggta acagtaatcg gttcaggtct
     4141 catggttgtc gttgtagaaa ttgttaaatt tgttcaacgt aagttgggat tggatgaaaa
     4201 agctatctaa tatagttatt cagcttatct tttattactt cgttaacttg ccttgccgta
     4261 cttcattaca gcctgcgact cgttgccttg tactaaaagc aaactgaaga ctatatcatt
     4321 tgaaaaagct cagatttagt ggtctgagct tttttctata ctgataatgt attttgggaa
     4381 gatttcttgt cccaataaag taatggctag tgctagtatg aggaggatgg ttttgacaag
     4441 agttggtaag ttaaacagta aggcgattgg tacgatagcc aagctgaaat agtggagagt
     4501 gaagtacctg ctattttcca tagtcatctg aattagcttt gatacatcgt cactttcgcc
     4561 ttgccgtact tcattacagc ctgcgcctca gttccttgtc tgaaagctaa ttcattcgac
     4621 tatattattt agaccctgtc gccgtcttta actcgaatgc ttagtataac agatggttgt
     4681 gtaattggta agcttagaat tttaccttga gtaactgtcc cagcaatttt tccatctacc
     4741 aggagcggaa gtttttggga ggatagttgt ttgatagttt ttgggtaatg aataataact
     4801 ctcatatgaa cctccttgta atctagtttc attatagcaa aaaaagaaaa aatgtaaacg
     4861 atttctgacg ctgttttccc ctacaggctt gcttgaagaa taagaaactg ctataatttt
     4921 gaagaggtag
//
LOCUS       DASGBY010000132         4882 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.133, whole genome shotgun sequence.
ACCESSION   DASGBY010000132 DASGBY010000000
VERSION     DASGBY010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4882
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.133"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            229..2754
                     /gene="secA"
                     /locus_tag="U1396_001733"
     CDS             229..2754
                     /gene="secA"
                     /locus_tag="U1396_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEM5342898.1"
                     /translation="MVTNVLRSLIENDKGELRKLEKMADKVFSYADEMEALTDEQLQA
                     KTAEFKERYNNGESLDDLLYEAYAVVREGARRVLGLYPYKVQVMGGIVLHNGDVPEMR
                     TGEGKTLTATMPVYLNALSGQGVHVVTVNEYLSTRDATEMGELYSWLGLSVGINLAAK
                     SPLEKREAYNCDITYSTNSEIGFDYLRDNMVVRAEDMVQRPLNYALVDEVDSILIDEA
                     RTPLIVSGAQGSETNQLYFLADNLVKSLTTEDYIIDIPSKTIGLSDSGIDKAEKFFKL
                     DNLYDIENVAITHFLDNALRANYIMTYDIDYLVNEDQEVMIIDPFTGRTMEGRRYSDG
                     LHQAIEAKEGVPVQNESKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVV
                     PIPTNRPIARVDHEDLLYPSLEYKFNAVIADVKRRYEKGQPVLVGTVAVETSDLISQK
                     LVAAGVPHEVLNAKNHYREAQIIMNAGQRGAVTIATNMAGRGTDIKLGPGVRELGGLC
                     VIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFGSERIKVFMERMNLT
                     EEESVIKSKMLTRQVESAQKRVEGNNYDSRKQVLQYDDVMREQREIIYRQRQDVITAD
                     RDLAPEIKAMMKRTIERQVAGHFLGSKDEAIDGIIKFAHANLVEDDTLSKATFEAMNQ
                     KEIVEELYERALRVYDSQVKKLRDEERVREFQKVLILRVVDNKWTDHIDALDQLRNAV
                     SLRGYAQNNPIVEYQSEAFTMFNDMIGAIEFEVTRLMMKAQIHDNIERERTSQEAHTT
                     AVKNIMPNQSHAIQENVSFEGVERNDPCPCQSGKKFKNCHGRK"
     gene            2869..3228
                     /locus_tag="U1396_001734"
     CDS             2869..3228
                     /locus_tag="U1396_001734"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEM5342899.1"
                     /translation="MIVGHGIDLQEMEAIESARIKHQGFPKKILTEKEFERYQSLSGR
                     RQLEYLAGRWSAKEALTKALGTGIGKIGFHDIEILNTSKGVPYVTKSPFDGNIWLSIS
                     HSGNFVQASVILEEKDD"
     gene            3221..4324
                     /locus_tag="U1396_001735"
     CDS             3221..4324
                     /locus_tag="U1396_001735"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEM5342900.1"
                     /translation="MIESEHRPTQIRVNLDAIAENFEQVMTNLPHKTEAFAVVKANAY
                     GHGAVAVAKKLSSQAAGFCVSNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNIS
                     VTVASLDWLQDAKDLEADLSGLTVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIE
                     GVYTHFATADEVDQAHFEYQLSIFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVR
                     LGNILYGLNPSGRVLELPFDVQPALSLVSEIVHVKQVETGTTIGYGATYHSADSEWIA
                     TVPIGYADGLVRSLQGLSVLVDGQACEIVGRISMDQITIRLPHAYPLGQKVTLIGQDG
                     DKTISVQEWADCIGTINYEVVCLLTDRIPRIFE"
BASE COUNT         1446 a          925 c         1108 g         1403 t
ORIGIN      
        1 tttaatgaat ttctaaatct ccgatatatc gcagattcct catttaaaat tttataaatt
       61 tttcacctcc taggagttat tgtgactagg aggtgttttg tggtaaaaat agtaatatta
      121 agctagcatt ttcacttatt taggctgtat cctagtgcca aaccttgaaa attgcctagt
      181 tttctgctac aatatattat tgactaaaac tgaaatagga tgaatgatat ggtaacaaat
      241 gtacttcgtt ctctcattga aaatgataag ggagagctaa gaaaacttga gaaaatggca
      301 gacaaggtct tctcgtatgc cgatgaaatg gaagcgctga ctgatgaaca gttgcaagct
      361 aagacagcag aatttaagga gcgatacaat aacggtgaat ccctcgacga tcttttgtac
      421 gaagcttatg cggtagtccg tgaaggagct cgtcgcgtat tgggtctcta tccctacaag
      481 gttcaggtta tgggaggaat cgttcttcac aacggtgacg ttccggaaat gcgtacaggt
      541 gaaggtaaaa ctctgactgc aacgatgcct gtttatttga atgccttgtc tggtcaaggt
      601 gttcacgtag tgacggttaa cgagtatctt tctactcgtg atgcgactga aatgggtgaa
      661 ttgtattcgt ggcttggtct atcagttggt atcaacttag ctgctaaatc acccttggaa
      721 aaacgtgagg cctataactg cgatattact tattcgacca actcagagat tggttttgac
      781 tatctccgag acaatatggt tgttcgcgca gaagacatgg ttcaacgtcc tctcaattat
      841 gccttggtcg atgaagttga ctcaatcttg attgacgaag ctcgtacgcc gttgattgta
      901 tctggtgcac aaggttcgga aacaaaccag ttgtatttct tggcagataa tcttgttaaa
      961 tctttgacaa cagaagatta catcattgac attccatcta aaacgattgg tctgtctgat
     1021 tcaggtattg acaaagcaga gaaattcttc aagttagata acctctacga tattgaaaat
     1081 gtagccatta cccatttctt ggataatgca cttcgtgcca actacatcat gacctatgat
     1141 attgactatc tggtcaatga agaccaagag gtcatgatta tcgatccatt tacaggtcgt
     1201 acgatggaag gtcgtcgtta ttctgatgga cttcaccaag ccatcgaagc taaggaaggt
     1261 gtaccggttc aaaacgagtc taagacaagt gcctctatta cctaccaaaa ccttttccgt
     1321 atgtataaaa aattatcagg gatgacgggt actggtaaaa cagaagagga agaattccgt
     1381 gaaatctaca acatccgtgt cgtaccaatc ccaaccaacc gcccaatcgc gcgtgttgac
     1441 cacgaagatc tactctatcc aagtctagaa tacaaattta atgccgttat tgctgatgtg
     1501 aagagacgct atgagaaagg gcaacctgtc ttggtcggta cagttgcggt tgaaacttct
     1561 gatttgattt ctcaaaaatt ggtagctgca ggtgtccctc acgaagtatt aaatgcaaaa
     1621 aaccactatc gtgaagcgca gattattatg aatgctggtc agcgtggtgc ggtcactatt
     1681 gcgaccaaca tggcgggacg cggtaccgat attaagttag gtccaggtgt acgtgaactt
     1741 ggtgggctgt gtgttattgg tactgagcgc catgaaagtc gtcgtattga taaccagctt
     1801 cgtggacgtt caggtcgtca aggtgaccca ggtgaatcac aattctatct atctctcgaa
     1861 gatgacttga tgaaacgctt tggttcagaa cgcatcaaag tatttatgga gcgtatgaat
     1921 ctaacagaag aagagtccgt catcaagtct aaaatgttga cacgtcaagt tgaatctgct
     1981 cagaagcgtg tggaagggaa caactacgac tcacgtaaac aagtccttca atatgacgat
     2041 gtgatgcgtg agcaacgtga aatcatctat cgccaacgcc aggatgttat tactgctgac
     2101 cgtgatttgg ctcctgaaat caaagcgatg atgaaacgga cgattgaacg ccaagttgcg
     2161 ggtcacttcc ttggttcgaa agatgaagct attgatggaa ttatcaaatt tgcgcatgca
     2221 aatctcgttg aagatgatac cttgagtaaa gctacttttg aagcaatgaa tcagaaagag
     2281 attgtcgaag agctctatga acgtgctttg agagtctatg attcgcaagt gaaaaaatta
     2341 cgcgatgaag aacgtgtacg cgaattccag aaagttctta tccttcgtgt tgtggataac
     2401 aaatggacag accatattga tgccttggat caattgcgca atgcagtcag tcttcgtgga
     2461 tacgctcaaa acaatccaat cgttgaatat caatcagaag catttactat gttcaacgat
     2521 atgattgggg ctatcgagtt tgaagtaacc cgcttgatga tgaaggcgca aattcatgac
     2581 aatattgagc gtgagcgtac aagtcaagaa gcacatacga cagctgttaa gaatattatg
     2641 ccgaaccaat cgcatgcaat tcaggagaat gtatcttttg aaggtgttga acgtaacgat
     2701 ccatgcccat gccagtctgg taagaaattt aaaaattgtc acggccgtaa ataggaatga
     2761 cgcatggact ggacggctgt ccagtccttt tgcaattttt agacaagtta ctagagtcag
     2821 ttcgtttatt ttaataaatg aaatgactat gcaaaaggag accgattaat gatagtagga
     2881 catggcattg accttcagga gatggaggcg attgaaagtg ccagaatcaa acaccaaggg
     2941 tttcccaaaa agattctcac agagaaggaa tttgaacggt atcaaagtct gtccggtcgc
     3001 cgtcagctag aatatttagc tggacgttgg tcagccaaag aagcgctgac caaggccttg
     3061 gggacaggta ttggtaagat aggatttcat gatattgaaa ttctgaatac cagcaaagga
     3121 gttccctatg tgacgaagag tccctttgat gggaatattt ggctcagcat tagccattca
     3181 ggaaattttg tacaagctag tgtgattttg gaggagaaag atgattgaaa gtgaacatcg
     3241 acccacgcaa attcgggtta acttagatgc gattgcggaa aatttcgagc aagtaatgac
     3301 caacttgccc cataagaccg aagcatttgc agttgttaag gcgaatgctt atggtcatgg
     3361 agctgttgcg gtagcgaaaa agttatccag tcaagcagct ggtttttgtg tttcgaattt
     3421 ggatgaagca ttagagttac gtaaagcggg tatcgagcat cctatcttga ttttaggagt
     3481 ggttcctgta cgttttttac cagtagctca tcaactcaat atcagtgtga cagttgctag
     3541 tctggactgg ttgcaagatg caaaagactt agaggctgat ttatctggtc taactgtcca
     3601 tcttaagcta gatacaggta tggggcggat tggttttaga aaaatagccg atttgctaca
     3661 agcgattgct atccttgaag aattagagta tgacatcgaa ggagtttata ctcattttgc
     3721 tactgcggat gaggttgatc aggcgcactt cgagtatcaa ctgtctattt ttaaagaatt
     3781 tttggatgtt ctaccaatta ctccgcgctg gattcatgcc agcaattcag caacaagcat
     3841 ttggcatgct gatacagtat ttaacctggt tcgtttggga aacattcttt atggacttaa
     3901 tccaagtgga cgagtactag aactcccgtt tgatgttcaa ccagccttat ctctcgtatc
     3961 tgaaattgtt catgtaaagc aggttgaaac tggcacaaca attggctacg gagctactta
     4021 tcacagcgcc gattcagaat ggattgcgac cgttccgata ggatatgcag atggtctcgt
     4081 acgaagctta caaggcttat cagtcctagt cgatgggcag gcctgtgaaa ttgtagggcg
     4141 tatttcgatg gaccagatca ccattcgctt acctcatgct tatccacttg gtcaaaaagt
     4201 cactctaatc ggtcaagatg gagataaaac gatctctgtt caggagtggg ctgattgcat
     4261 cggaaccata aattacgagg tggtttgtct tttgacagat cgcatacctc gaatttttga
     4321 gtaaacgtga cgataatccg cctctttcac taggatagaa ggctaaaata ttagagaggt
     4381 attgcctaga gattgtctat aatacaaata gcgtcattta gttgactttt attacttcga
     4441 caatcgagga aatatcgttt ccatatttcc aacttcaaac actccactgg attgtttgaa
     4501 ctcgccttgc ctgattttgt aaaagtgact tgctttgcaa gcaatctggg ggatacgaat
     4561 agtccagcgg actattcgta cctgagcctg aaaacaaaaa agcgaagtgc atcagctggt
     4621 cacctagaaa taagaaagca ttgagttatg cctgcggctt ttgatgtgaa catcgttcac
     4681 tttgtcccca gtctccaact atctcccata tagttggagc gagtgctaaa agtaaactaa
     4741 aagactataa tgagtctggt caaaaagtct aatactcttc gaaaatcaaa attatccgtt
     4801 gtcaacttgc cttgatgaac ttcagttcta tcttcgactt cgtttcctag gctacttttg
     4861 attttcattg agtataaaaa at
//
LOCUS       DASGBY010000133         4872 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.134, whole genome shotgun sequence.
ACCESSION   DASGBY010000133 DASGBY010000000
VERSION     DASGBY010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.134"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            105..1253
                     /locus_tag="U1396_001736"
     CDS             105..1253
                     /locus_tag="U1396_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HEM5342901.1"
                     /translation="MKHVFIIGSRGLPAKYGGFETFVQQLVSHQQSEKICYHVACLSD
                     TSHHQHSTYLGADCFTINPPKLGPARVIAYDMMAITYALKIIKEQQMERPIFYILGNT
                     IGGFIVPFAKQIHSVGGTLFVNPDGLEWKRAKWAKPVQRYLKFSEKMMVKYADLIIAD
                     NEGIEDYIQSEYSATNTRFIAYGTDLSPTKLTKESEQVRQYFTNWNIKEKEFYLIIGR
                     FVPENNYVTAIKEFMASNTRRDLVIVANHEGSAYFQKLKDETGFISDKRIKFVGTVYD
                     QELLKYLRQECRAYIHGHEVGGTNPSLLEALAQTNENLVLGVDFNRKVALEGARYWSK
                     ESGSLSQLINQIDENAEAVELGEIAKKHMKDEYTWEKIVQEYEELFLQ"
     gene            1250..2179
                     /locus_tag="U1396_001737"
     CDS             1250..2179
                     /locus_tag="U1396_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5342902.1"
                     /translation="MKVNILMSTYNGQQFLAEQIRSIQEQTYTDWTLFIRDDGSSDRT
                     REIIKDFVEQDQRIHFIDVETDENLGVIKSFHRLIHYDTADFYFFSDQDDVWLPNKLE
                     VSLKKAQAYPTNLPLMVYMDLKVVNQNLEVMAESMVKSQSHHANTELVQELTENTVTG
                     GVAMINHHLAEMWQVTEDILMHDWYLALLASALGKLVFIDKPGELYRQHADNVLGART
                     LSKRFKKWIRPHILFAVYWDLIKNSQKQARHLLQMPLSQSNRELIEAFVTIMDKPMLE
                     RFRILRKYGLRKNKTFHTLVFTTLIVTKFAYKE"
     gene            2182..2988
                     /locus_tag="U1396_001738"
     CDS             2182..2988
                     /locus_tag="U1396_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342903.1"
                     /translation="MNLLNKENQILLREMIKTDFKLRYQGSLIGHLWSILKPMLLFTI
                     MYLVFVRFLRFDDGTPHYAVGLLLGMVTWNFFTEATNMGMMSIVSRGDLLRKLNFSKE
                     IIVFSSVAGAAINYAINLMVVFVFAAINGVPFTWSILIIIPLFFELALLATGIAFILS
                     SLFVRFRDIGPIWEVFLQAGLYATPIIYSLTFILQRGQVTFAKLMMLNPVAQIIQDLR
                     HFIVYSGNTTVSELIENPVIVAIPYILPVVVYLLGITVFRKNAKKFAEIL"
     gene            2988..4202
                     /locus_tag="U1396_001739"
     CDS             2988..4202
                     /locus_tag="U1396_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342904.1"
                     /translation="MVKNNNIAVKVEHVSKSFKLPTESSQSLRTTLVNLFKGIKGYVE
                     YNVLQDISFEVEKGDFFGIVGRNGSGKSTLLKILSQIYVPERGTVAVDGKLVSFIELG
                     VGFNPELTGKENVYLNGAMLGFTAEEIDAMYDDIVEFAELSEFMNQKLKNYSSGMQVR
                     LAFSVAIKAQGDILILDEVLAVGDEAFQRKCNDYFLERKKSGKTTILVTHDMGAVKKY
                     CNKALLIEKGYVKALGEPDDVANQYSFDNVLASISEVTENEEPLHQSDIVKDLQINLV
                     SKNQIEPDESIEIEFRYTVLEDIETHVAFTFLDLERHFDVYNDNSMDLKTFGKGEKFF
                     RVKCKLPSINQAKLKMAVSVRNSNKQPLLFAKTSDTPAIFISRKFSTDNIAEEDAATG
                     FIQRNSQWELLD"
     gene            4223..>4872
                     /locus_tag="U1396_001740"
     CDS             4223..>4872
                     /locus_tag="U1396_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnan synthesis protein F"
                     /protein_id="HEM5342905.1"
                     /translation="MSRLLVYVHYNKYNVVSEYIYYQLKSIRSIYSDIVFVSNSHVSK
                     DIVQYLQSERLIDFFIQRDNIGYDFAAWKEGLNQVTFYQYDSVTLMNDTCFGPLWDLE
                     DYYSQFDSDVDVDFWGMTNHLETKIDSVVVPEHLQSYFMVFKKQILQSQAFVGFWSSV
                     SELTDIQDVIKLYESQLTKILLSEGYSYKCVLDTSIYCKTLENSNITLEYPEVILK"
BASE COUNT         1603 a          725 c          997 g         1547 t
ORIGIN      
        1 ggcgtagaaa aagaaaagcc tttataacca aactaggata gaattaggaa aaaaaactaa
       61 aaaatggtat aatgaaaaga actgcaattt gatggagagg attcatgaaa cacgttttta
      121 ttatcggtag tcgtggactg cctgcaaaat atggtggctt tgagaccttt gtccaacaat
      181 tggtcagtca ccagcaatct gagaagattt gttatcatgt ggcttgttta tcggatacaa
      241 gtcatcacca acattcgacc tacctaggtg cagattgctt caccattaat ccaccaaaac
      301 ttggaccggc tcgtgtgatt gcttatgata tgatggcgat cacttatgca cttaaaatca
      361 ttaaggaaca gcagatggag cgaccaattt tctatatctt gggaaatacc ataggtggct
      421 tcatagtacc ttttgcgaaa cagattcact ctgttggagg taccttgttt gtcaatccag
      481 atggtttgga atggaaacgt gccaagtggg ctaagccagt ccaaaggtat ctaaaatttt
      541 ctgaaaaaat gatggtcaaa tatgctgatt tgattattgc tgataatgag ggaattgagg
      601 attatattca atctgaatac tcggctacca atacacgctt tattgcctat ggtacagatt
      661 taagtccgac taagttaaca aaagaatctg aacaagttcg ccaatatttt acaaattgga
      721 acattaaaga gaaagaattt tatctgatta tcggtcgttt tgtacccgag aataactatg
      781 tgacagcaat taaggagttt atggcaagca acacgagacg tgatttagtc atcgttgcaa
      841 accatgaagg ctctgcctat tttcaaaaat tgaaagatga gacaggcttt atatccgata
      901 agcggattaa gttcgtagga acagtatatg accaagaact acttaagtat ctgcgccaag
      961 aatgtcgagc ttatattcat ggacatgaag ttggaggaac caatcctagt ctcctagaag
     1021 cgctggcgca aaccaatgaa aatttggttt taggtgttga ttttaaccgc aaagttgccc
     1081 tagaaggtgc tcggtattgg agtaaggagt caggtagcct gagtcaatta attaaccaaa
     1141 ttgatgagaa tgctgaagcg gtggaattag gagaaattgc gaaaaaacac atgaaggatg
     1201 aatacacctg ggaaaaaatc gtccaagagt acgaggaatt atttttacaa tgaaagtaaa
     1261 catactcatg tcgacctaca atggtcaaca gttcttagct gagcaaattc gctctattca
     1321 agaacagact tacacagact ggacactgtt cattcgtgat gatggttcca gtgatcgaac
     1381 tagagagatt attaaagatt ttgttgaaca agatcagcga attcacttca tagatgttga
     1441 gacagacgaa aatctcggtg tcatcaaaag ttttcatagg ctaattcatt atgatactgc
     1501 tgatttctat tttttcagtg accaagatga tgtttggcta ccaaataaac tggaagttag
     1561 cctgaaaaaa gcacaagcct atccaacaaa tttgccattg atggtttata tggacctcaa
     1621 agttgtcaat caaaatctag aagttatggc agaaagcatg gtaaaatctc aatctcatca
     1681 tgccaatacg gaattggtgc aagagttgac tgagaatact gtaactggcg gtgtcgccat
     1741 gattaatcat catcttgctg aaatgtggca agtaactgag gatattttga tgcatgactg
     1801 gtatttagct ttgttggcct cggctttggg taaactggtt tttattgaca agcctggcga
     1861 actctatcgc cagcatgcgg ataatgtttt gggagctaga accctttcta aacgatttaa
     1921 aaaatggatt cgtcctcaca ttttatttgc agtttattgg gacttgatta aaaatagtca
     1981 aaaacaagcc cggcatttat tacaaatgcc cctttctcaa tcaaatagag aattaataga
     2041 agcctttgta accattatgg ataaaccaat gcttgaacga ttcaggattt tgagaaaata
     2101 tggtttaaga aaaaacaaaa cctttcatac attagtattc acaacactga ttgtgacaaa
     2161 atttgcatat aaggaataac aatgaattta ttaaataaag aaaatcaaat actcttaaga
     2221 gagatgatta aaacagattt taaattacgt taccaaggtt ctctcattgg gcatctttgg
     2281 tcgattttga aaccgatgtt actttttaca attatgtatt tagtatttgt tcgttttttg
     2341 cgctttgatg atggaactcc tcattatgca gtagggttat tattaggtat ggtaacctgg
     2401 aactttttta cagaagcaac taatatgggg atgatgtcta ttgtttcacg cggagattta
     2461 ttgcggaagt tgaatttttc taaagaaatt attgtatttt cttcagttgc aggagctgca
     2521 attaattacg ccattaactt aatggttgtg tttgtatttg ctgctattaa cggggttccc
     2581 tttacttggt ccattctaat tataatccca ttgttttttg aattggcatt actagcaaca
     2641 ggtatagctt tcattttatc ctctttattt gtaagattta gagatattgg tccaatttgg
     2701 gaagtgttct tacaggctgg attgtatgca acaccaatta tttattcact aacattcatt
     2761 ttacagcgtg ggcaagtaac atttgctaaa ttgatgatgt tgaaccctgt tgcacaaatt
     2821 attcaagact tgagacattt tattgtttat tctgggaata ctacagttag tgaattgatt
     2881 gaaaatcctg ttattgtggc aattccgtat attcttccag tcgttgttta cctattgggt
     2941 ataactgtgt ttagaaaaaa tgccaaaaag tttgcggaga ttttgtaatg gtaaaaaata
     3001 ataatattgc tgtgaaagta gaacatgtta gcaagagttt taagcttcca acggagagta
     3061 gtcagagtct aagaactact ttagtcaatt tatttaaagg gattaaaggc tacgtagagt
     3121 ataatgtttt gcaggatatc agtttcgaag ttgaaaaagg agattttttt ggaattgttg
     3181 ggcgcaatgg ttctggtaag tctacactgt taaaaatttt atctcaaata tatgttcctg
     3241 aaagagggac tgtagctgtg gatggtaaat tagtttcttt tattgaactt ggtgttgggt
     3301 ttaatccgga actaactggt aaggaaaatg tatacctaaa cggtgcgatg ttaggattta
     3361 ctgcagaaga aattgatgca atgtatgatg atattgttga atttgcggaa ttgagtgaat
     3421 tcatgaatca aaagttgaaa aactattcta gtggtatgca ggtacgttta gccttttcag
     3481 ttgccattaa agctcaagga gatattctga tacttgatga ggttctagca gtcggtgatg
     3541 aggcctttca gcgtaaatgt aatgattact tcctagagcg taaaaaaagt ggaaaaacaa
     3601 ccattcttgt cacccatgat atgggagctg tgaaaaagta ttgtaataaa gctcttctta
     3661 tagagaaagg atacgtcaag gcattaggag aacctgatga tgtagctaat caatacagtt
     3721 ttgataatgt gcttgcctca ataagtgaag ttacagaaaa cgaagaacct ctgcatcaga
     3781 gtgatattgt aaaagatttg cagattaacc tggtctcaaa aaatcaaatt gaaccagatg
     3841 aatcaattga aatcgagttt agatatacgg ttttagaaga tattgaaaca catgttgcat
     3901 ttacattttt agatttagaa cgtcattttg atgtatataa cgacaattct atggatttaa
     3961 aaacgtttgg caaaggcgag aagtttttcc gagtgaaatg taagctaccc tcaattaatc
     4021 aagcaaaatt aaaaatggcg gtgtcagtac gaaatagtaa taagcagccg ttattatttg
     4081 ccaagacttc tgacacacca gctattttta ttagtaggaa gtttagtact gataatattg
     4141 cagaggaaga cgcagcaacc gggtttattc agagaaatag ccaatgggag ctgctagatt
     4201 aataaaatat aacggaggca gaatgtcgcg tttgttggta tatgttcact ataataaata
     4261 taatgttgtc agtgaatata tttattatca attaaagtcg atacgaagta tttattcaga
     4321 catagttttt gtttctaaca gccatgtttc aaaggacata gtacaatatt tacagtcgga
     4381 acgactgatt gattttttta tccaaagaga taatattggt tatgattttg cggcatggaa
     4441 agaagggctg aatcaagtaa cattttatca atatgattcg gtaactctga tgaatgatac
     4501 atgtttcggc cccctctggg acctagagga ttattatagt caatttgaca gtgatgttga
     4561 tgtagatttt tgggggatga ccaatcactt agagacaaaa atagatagtg tagttgtccc
     4621 ggaacattta cagtcatatt ttatggtatt taaaaaacaa atcttgcaga gtcaagcatt
     4681 tgttggtttt tggtcatcgg taagtgagtt aacagatatt caagatgtta taaaattata
     4741 tgagagccaa ttgacaaaaa tacttttatc agagggttat agctataagt gtgtattaga
     4801 tacgtccatt tattgtaaaa cccttgaaaa tagcaacatt acattagaat atccagaagt
     4861 tatacttaaa aa
//
LOCUS       DASGBY010000134         4760 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.135, whole genome shotgun sequence.
ACCESSION   DASGBY010000134 DASGBY010000000
VERSION     DASGBY010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4760
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.135"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            255..1412
                     /locus_tag="U1396_001741"
     CDS             255..1412
                     /locus_tag="U1396_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEM5342906.1"
                     /translation="MLKTKKAKIALFGGLGVVAVALVGGALIFSNMLTSPSSSEDVAM
                     SMTYTVAKEGSIASSTLLTGTITAADEQYVYYDPSKGDLSEVLVAPGAKVEVGTPLIR
                     YDATELQSALDTAVRGRDKIGRQIADLRTNGQTVQTTGDAETDAAATAAAQRSVDMQL
                     ADLNDSYADAQAAVDKAYTALTEATVTSTVAGTVVEVNKAVSKNSTSSQTVVHIVNQG
                     SLQVTGSLTEYDLANIAVDQEVKLTSKVYPDKTWTGKITYISNYPSSNQAGAATTGTS
                     GSGAKYPFKAALTSELGELKQGFSVNIEVVNTSKNILIPVSAVVPEEDKNYVWTLVDG
                     KAKKVEVTLGNADALNQEVTAGIAAGDKVITIPTPNLEDGKEVEANEEPAY"
     gene            1393..2088
                     /locus_tag="U1396_001742"
     CDS             1393..2088
                     /locus_tag="U1396_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342907.1"
                     /translation="MKNQLIRLTSINKSYKNGDQELRVLKNIDLEVEEGEFLAIMGPS
                     GSGKSTLMNIIGLLDRFSSGNYWLEGEEVSQLSEKKLAQVRNDQIGFVFQQFFLLSKL
                     NALQNVELPLIYAGVPSSKRKELAKQYLEKVELAERMTHLPSELSGGQKQRVAIARAL
                     VNTPAIILADEPTGALDTKTGEQIMQLLTELNNEGKTIIMVTHEPEIAAYAKRKIVLR
                     DGVITEDSRREGV"
     gene            2089..3336
                     /locus_tag="U1396_001743"
     CDS             2089..3336
                     /locus_tag="U1396_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342908.1"
                     /translation="MENWKFALKSIMAHKMRSLLTMLGIIIGVAAVVIIVAMGTGVAK
                     SIEKSLAGDQNNVQVYFTAFSSSGTAFGPFGTASTEEPILEEEPDLTDSTLKGLLEID
                     GVSNYYSSISNIAEVRSGNKKAENVTITGVSQNFFAVKEYEILAGRQFTANDYSRFSR
                     MIMLDTALAEKLFGSIENSLNQTISVNSNAYLVIGVYKDPKAGTAIYGMNSGGNAVMT
                     NTQLAAETGMKENSQIFVHVEDVTRATEVGKAAADYLTKATGLKEARYEIYDMSAMLE
                     EFKSQMSGVTLFIGAVAGISLLVGGIGVMNIMLVSVTERTREIGLRKALGATRGNILI
                     QFLIEAMVLTTLGGAIGLAIAQTIVFLLNVSKALGERIAAEISIPVVLGSLAFSAVVG
                     IVFGVLPANKASKLDPIEALRYE"
     gene            3462..4526
                     /locus_tag="U1396_001744"
     CDS             3462..4526
                     /locus_tag="U1396_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM5342909.1"
                     /translation="MVELGISTFGETTPLEKTGETYSHDERIHQLVKEIELADAVGLD
                     VYGIGEHHREDFAVSAPEIVLAAGAVNTKHIKLTSAVSILSSMDPVRLYQQYTTIDAL
                     SNGRAEIMAGRGSFTESFPLFGYDLHDYEELFDEKLDMLLEIDKETNLKWDGHFTQSV
                     DNKPVYPRPVQEDFPIWVATGGNVESTIKIAKKGLPIVYAVIGAGAHRFKPLVDAYRK
                     VARNSGHDPKKTKVAAHSWGWIADDHDKAVEEYYHPTKVITDNIAKDRPHWSEMTKAQ
                     YLYSLTDEGATIVGDPKRVAEKIIKTIETLDLDRFFLHLPIGSMPHEDVLRAIELYGK
                     EVAPIVRDYFAKKEENQSQD"
BASE COUNT         1439 a          888 c         1098 g         1335 t
ORIGIN      
        1 caaattgaac aaattattct agctcataat ttacgctatt ttgaaatgaa ctagcaccac
       61 gggttaacta tattcattgt aacgcttttt tgtgtgtcaa tcaaaaatcc gctacgttac
      121 cttacaaaaa tgtaagtggg aaaattgccg aactttttat aaaatagtta ggaaaaaact
      181 tgcatttgtt cttgtatttg tgtattatat agacaacaca aataggtatg ttttgtaaag
      241 aaaaggagtt tgttatgtta aagacgaaga aagcaaaaat tgctttgttt ggtggtcttg
      301 gggtagtcgc agttgcctta gtaggtgggg ctttgatttt tagcaatatg ctaacatcac
      361 catcatcttc agaagatgta gccatgagta tgacctatac tgttgctaaa gaaggatcaa
      421 ttgcttcctc aacgctactt acaggaacga ttacagcagc agacgagcag tatgtttact
      481 atgatccttc taagggagat ttgagtgagg ttttggttgc tccaggtgct aaggtcgaag
      541 taggtacccc tttgattcgc tatgatgcta cagaattaca gtctgctttg gatactgctg
      601 ttcgtggtcg tgataagatt ggtcgccaaa ttgcagactt aagaaccaac ggtcagactg
      661 ttcaaacaac tggtgatgca gaaacagatg ctgcagcaac tgctgctgca caacgttcag
      721 tagatatgca gttggcagac ttgaatgatt catacgcaga tgctcaagct gcggttgata
      781 aagcatatac agccttaaca gaagcgacag taactagtac cgttgctggt acagttgttg
      841 aggtgaataa ggctgtttct aagaattcta catcgagcca aacagttgta cacattgtaa
      901 atcaaggtag tttgcaagta acaggtagtt tgacagaata cgatttggct aacattgcag
      961 tggatcaaga ggtcaagctg actagcaagg tatatcccga taagacttgg acagggaaaa
     1021 ttacctatat ttcaaactat ccatctagta atcaagctgg tgctgctaca acaggaacca
     1081 gtggttcagg tgccaaatat ccatttaagg cagctttaac tagtgaatta ggtgagttga
     1141 aacaaggatt ttctgtaaat attgaggttg tcaatacaag taaaaacatt ttaattccgg
     1201 tgtccgcagt tgtgccagaa gaagataaaa actatgtgtg gaccttggtt gatgggaaag
     1261 ctaagaaagt agaagttact ctggggaacg cagatgcttt gaaccaggaa gtgaccgctg
     1321 gtatagcagc aggagataag gttattacca ttccaactcc gaatctcgaa gatggcaaag
     1381 aggttgaagc caatgaagaa ccagcttatt agactaacaa gtatcaataa atcctacaaa
     1441 aatggtgatc aagaactccg agttttaaag aatattgatt tagaggtgga agagggagaa
     1501 tttcttgcca ttatggggcc ctctggttca gggaaatcaa ccttgatgaa cattattggg
     1561 cttttggatc gtttcagttc aggaaactat tggctggaag gtgaagaagt cagtcaactt
     1621 tctgagaaaa aattagctca ggttcggaat gaccaaatcg gtttcgtctt tcaacaattt
     1681 ttcctcttat cgaaacttaa cgcccttcaa aatgtagaat tacccttgat ttatgctgga
     1741 gttccatcaa gcaaacgtaa ggaactagca aaacagtatc ttgaaaaagt tgagttggca
     1801 gagcggatga cgcatttacc atcagaattg tctggtggtc aaaaacaacg ggtagctatt
     1861 gctcgtgcac tagtcaatac cccagctatt attttagcgg atgaacctac aggggctcta
     1921 gataccaaga caggtgagca gattatgcaa cttctgacgg agttgaataa tgaaggaaag
     1981 accattatca tggttacgca tgagcctgag attgctgcct acgcaaaacg aaaaatcgtt
     2041 ctacgtgatg gagtgatcac tgaagatagt cgaagggagg gagtttagat ggaaaattgg
     2101 aaattcgccc tcaaatctat tatggctcat aaaatgagat cgctccttac tatgttaggt
     2161 atcatcattg gtgtggctgc agttgtcatt attgtcgcca tgggaacagg ggtggccaaa
     2221 agcatagaaa agtctctagc tggtgatcaa aataatgttc aggtttactt tactgctttc
     2281 tccagttcag gtacagcttt cggtccgttt ggcacagcgt cgacagaaga accaatttta
     2341 gaggaagagc cggatttgac ggattctact ttaaaaggac tgctagagat tgatggcgta
     2401 tcaaactatt actccagcat cagcaacata gctgaagtca gatcgggcaa taaaaaagca
     2461 gagaatgtca ctattactgg tgttagccag aatttctttg ctgtgaaaga gtatgagatt
     2521 ttagctggtc gtcagtttac agctaacgac tatagtcgtt tttcacgtat gattatgtta
     2581 gatacggcat tagcagagaa gttatttggt tctatagaga actctctcaa tcagacgatt
     2641 agtgttaata gcaatgccta tctagtaata ggggtctaca aagatccgaa agcaggcaca
     2701 gctatttatg gaatgaattc aggtggaaat gccgtcatga ctaatacgca gctagctgct
     2761 gaaacaggca tgaaagaaaa ttctcaaatc tttgtccatg ttgaagatgt tactcgggca
     2821 acagaagttg ggaaggctgc tgcagattac ctgactaaag cgactggatt gaaagaagcg
     2881 agatacgaga tttatgatat gtcagctatg ttggaggagt ttaaatctca aatgtctggc
     2941 gttacattgt ttatcggtgc tgttgcaggt atctccttgc tagttggtgg tatcggtgtc
     3001 atgaatatca tgctggtatc agtaactgag cggactcgtg aaatcggtct tcgaaaagcg
     3061 cttggagcaa ctagaggaaa tatcttgatt caattcttga tagaagccat ggtcttgacc
     3121 actcttggtg gagcaattgg tctcgcaatc gctcagacaa tagttttctt gctcaatgtg
     3181 agcaaggcgt tgggcgaaag aatagctgct gaaatttcaa ttcctgttgt gttaggtagt
     3241 ctggctttct cagcagtagt tggtattgta tttggcgtac tacctgccaa caaagcatct
     3301 aagcttgatc caattgaagc tttgcgctat gaataatctg ttgaaacgat taggttttcc
     3361 tagtcgtttt attttttgag caaatcaatt gattttatcg ctaattagag ataaaataaa
     3421 cgcatcaatt aagaaatagt gatttcaaag gagaacacat catggtagaa ttaggtattt
     3481 caacatttgg cgaaacaact ccactagaaa aaacagggga aacttacagc cacgacgagc
     3541 ggattcacca gctagtcaaa gaaatcgaac tagctgatgc ggtggggctt gatgtttatg
     3601 ggattgggga gcatcaccgc gaagattttg cggtttctgc acctgagatt gtgctggcag
     3661 ctggtgccgt caataccaag catatcaaac taacatcagc agtttcaatc ctttcctcca
     3721 tggaccctgt aaggctctat cagcagtaca ccaccattga tgctttgtca aatggcagag
     3781 cggaaatcat ggcgggtcgt ggttccttta cggagtcatt ccccttgttt ggctatgatc
     3841 tccacgacta tgaagaactc ttcgatgaaa agctagatat gcttctggaa atcgacaagg
     3901 aaaccaatct caagtgggat gggcatttta cccagtcagt cgataataag ccagtctatc
     3961 cacgtcctgt tcaggaagat tttccgatct gggttgcaac tgggggcaat gtagagtcca
     4021 ccatcaagat tgctaagaaa ggcctgccaa tcgtgtatgc agtcattggt gcaggtgccc
     4081 atcgctttaa acctttagtc gatgcttatc gcaaggttgc tcgcaactca ggtcatgatc
     4141 caaagaaaac gaaagttgca gcccattctt ggggttggat tgcagacgac catgacaagg
     4201 ctgtggaaga atactatcat ccaactaaag taattacgga caatattgcc aaagaccgcc
     4261 cacattggag cgagatgacc aaggcgcaat atctctactc tctgacagac gaaggagcaa
     4321 ccatcgtcgg agatccaaaa cgagtcgctg aaaaaattat caagactatt gaaacacttg
     4381 acttggaccg tttcttcctc catctcccaa tcggctcaat gccacatgaa gatgtcctcc
     4441 gtgctatcga actctacgga aaagaagttg cgccaattgt ccgagattat tttgcaaaaa
     4501 aagaagagaa tcagtcccaa gactgatgag ataaaaagga ggggacgtta taatagcctc
     4561 acttctctaa agtggagtca acatctcagc gcagtggttg attggaagat ttgttcgtgt
     4621 tttacactcc acatcttcct aatcaactgt gcgggggtgg gaagacgaac tctctatgat
     4681 tatttgagtt ctgtcccact cccaatccta aatatttttc ataatctcct gaaaatcctg
     4741 accatatggt tgggattttt
//
LOCUS       DASGBY010000135         4753 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.136, whole genome shotgun sequence.
ACCESSION   DASGBY010000135 DASGBY010000000
VERSION     DASGBY010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4753
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.136"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            40..2691
                     /gene="adhE"
                     /locus_tag="U1396_001745"
                     /gene_synonym="adhC"
     CDS             40..2691
                     /gene="adhE"
                     /locus_tag="U1396_001745"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HEM5342910.1"
                     /translation="MADKKVVSPEEKLVEARKHVDELVQKGLVALDEFRKLGQEEVDY
                     IVAKASVAALDKHGELAMHAFEETKRGVFEDKATKNLFACEHVVNNMRHTKTVGVIEE
                     DEVTGLTLIAEPVGVVCGITPTTNPTSTAIFKSLIALKTRNPIVFAFHPSAQESSAHA
                     ARVVYEAAVAAGAPENCIQWITKPSMEATSELMKHDGIATILATGGNAMVRAAYSCGK
                     PALGVGAGNVPAYVEKSANIRQAAHDIVMSKSFDNGMVCASEQAVIIDKEVYDEFVTE
                     FKSYKTYFVNKKEKALLEEYCFGVKANSKNCAEGKLNADIVGRPAAWIAEQAGFSVPE
                     GTNILAAEVAEIGEKEPLTREKLSPVIAVLKVEGRAEGLEAARQMVEFHGLGHSAAIH
                     TEDAELAKEFGTIVRAIRVIWNSPSTFGGIGDVYNAFLPSLTLGCGSYGRNSISDNVS
                     AMNLLNIKKVGRRRNNMQWFKVPSKTYFERDSIQYLQKCRDVERVMIVTDRAMVELGF
                     LDRIIEQLDLRRNKVVYQIFSDVEPDPDITTVYKGTELMRTFKPDTIIALGGGSPMDA
                     AKVMWLFYEQPTVDFHDLVQKFMDIRKRAFKFPELGKKSKFIAIPTTSGTGSEVTPFA
                     VISDKANNRKYPIADYSLTPTVAIVDPALVLTVPAHVTADTGMDVLTHATEAYVSTVA
                     NDFTDGLALQAIKLVFENLESSVKNADFVSREKMHNASTMAGMAFANAFLGISHSMAH
                     KIGGRFHTVHGRTNAILLPYVIRYNGTRPAKTATWPKYNYYKADEKYQDIARLLGLPC
                     STPEEAVAAYAQAVYDLGERIGIQMNLKAQGIDEKELKEHSRELALLAYEDQCTPANP
                     RLAMVDHMQEIIEDAYYGYKERPGRIK"
     gene            3106..4590
                     /locus_tag="U1396_001746"
     CDS             3106..4590
                     /locus_tag="U1396_001746"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006595200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEM5342911.1"
                     /translation="MTLVYQSTRDAKNTVSASQAILQGLATDGGLFTPISIPAVDLDF
                     SVLKDASYQEVAKLILSAFLDDFTADELDYCINNAYDSKFDTPAIAPVVKLKGQYNLE
                     LFRGSTIAFKDMALSILPYLMTTAAKKHGLENEIVILTATSGDTGKAAMAGFADVPGT
                     QIIVFYPRDGVSKVQELQMTTQTGANTHVVAIDGNFDDAQTNVKRMFNDEALRAKLAA
                     KKLQFSSANSMNIGRLVPQIVYYVYAYAQLVKTGEIAAGDKVNFTVPTGNFGNILAAY
                     YAKQIGLPVGKLICASNDNNVLTDFFSTGVYDKNRTFRVTTSPSMDILVSSNLERLIF
                     HLFDNDAAKTAELMEALNTAGQYDIQGADADILSLFAAAFATEEETAAEIKRVYDESD
                     YIEDPHTAVASAVYKQYVEQTGDQTPTVIASTASPYKFPVVAVEAVTGQSGLSDFEAL
                     AKLHEISGVALPPAVDGLETAPVRHNTVVAAADMQAEVERYLGV"
BASE COUNT         1369 a         1021 c         1065 g         1298 t
ORIGIN      
        1 agttaacaaa tagttagcga gtatatttgg aggaacacaa tggctgataa aaaagtagta
       61 tcaccagaag aaaagttggt agaagcgcgc aagcacgtcg atgagcttgt tcaaaaaggt
      121 ttggttgctc ttgatgagtt ccgtaaactt ggtcaagaag aagtagacta tattgtagcg
      181 aaagcttcgg ttgcagccct tgataaacat ggcgaattgg caatgcacgc ctttgaagaa
      241 actaagcgtg gtgtattcga agacaaggct actaagaact tgtttgcttg tgagcacgtt
      301 gtcaataaca tgcgtcacac gaaaactgtt ggtgttattg aagaagatga agtgacaggt
      361 ttgactttga ttgctgagcc ggtcggtgtt gtttgtggta tcacaccaac aacaaaccca
      421 acttctacag caatctttaa atcattgatt gccttgaaga cacgtaatcc gattgtcttt
      481 gccttccacc catctgcaca agaatcttct gctcatgcag ctcgtgttgt ctatgaagca
      541 gctgtggcag ctggtgctcc tgaaaactgt atccagtgga ttacaaaacc atctatggaa
      601 gcaacatctg agttgatgaa acatgatggt attgcaacaa tccttgcaac tggtggtaac
      661 gcaatggtgc gcgcagctta ctcttgtggt aaacctgccc ttggtgtagg tgcaggtaac
      721 gttccagcct atgttgaaaa atcagcaaat attcgtcagg cagcacatga catcgttatg
      781 tctaagtcat ttgacaacgg tatggtctgt gcgtcagaac aagcagttat cattgataaa
      841 gaagtttacg atgagtttgt aacagagttc aaatcttaca aaacttactt cgttaataag
      901 aaagaaaaag ctcttcttga agaatactgc ttcggtgtga aagctaacag caaaaactgt
      961 gctgaaggta aattgaacgc agacatcgtt ggtcgcccag ctgcatggat cgctgagcag
     1021 gccggcttct cagtaccaga aggtacaaac atcttggcag ctgaggttgc tgaaatcggt
     1081 gaaaaagaac cattgactcg tgagaaattg tcacctgtta ttgccgtctt gaaagttgaa
     1141 ggtcgtgcag aaggtcttga agcagctcgc caaatggttg aattccacgg tctcggtcac
     1201 tctgcagcta ttcatacgga agacgcagaa ttggcgaaag agtttggtac aatcgtacgt
     1261 gctatccgtg ttatttggaa ctctccatct actttcggtg gtatcggtga tgtttacaac
     1321 gcattcttgc catcattgac acttggttgt ggttcttacg gacgcaactc aatcagtgat
     1381 aacgtaagtg ctatgaactt gctcaacatc aagaaagtag gaagacgtag aaataatatg
     1441 caatggttta aagttccttc taaaacatac ttcgaacgtg actctatcca atatctccaa
     1501 aaatgccgtg acgttgaacg tgtcatgatc gttacagacc gtgccatggt agaacttgga
     1561 ttcctagatc gtatcatcga acaattggac cttcgtcgta ataaagttgt ttatcaaatc
     1621 ttctcagacg ttgagccaga tccagacatc acaacggttt ataaaggtac agaattgatg
     1681 cgtaccttca aaccagatac aatcatcgca ctcggtggtg gttcaccaat ggatgctgcc
     1741 aaagttatgt ggctcttcta cgaacaacca acagttgatt tccatgacct agttcaaaaa
     1801 ttcatggata tccgtaaacg tgccttcaag ttcccagaac ttggtaagaa atctaagttt
     1861 atcgcgattc caactacatc aggtacaggt tcagaagtaa caccgtttgc cgtaatctct
     1921 gataaagcaa acaaccgtaa atacccaatc gctgactact cattgacacc aactgtggca
     1981 atcgttgacc cagcactcgt attgacagta cctgcacacg ttacagcgga tactggtatg
     2041 gacgtattga ctcacgctac agaagcatac gtttcaacag tagccaacga ctttacagat
     2101 ggtttagcac ttcaagctat caaactagta tttgaaaacc ttgaaagctc agtgaagaat
     2161 gctgactttg tatcacgtga gaaaatgcac aacgcatcaa ctatggcagg tatggccttc
     2221 gccaacgcat tcctaggtat ttctcactca atggctcata agattggtgg acgtttccat
     2281 accgttcacg gtcgtacaaa cgctatcttg cttccgtacg ttatccgcta caacggtact
     2341 cgtccagcta agacagctac atggcctaag tacaactact ataaagcaga tgaaaaatac
     2401 caagacatcg ctcgtcttct aggtttgcca tgttcaacac cagaagaagc tgttgcagca
     2461 tacgcacaag cagtttatga cctcggtgaa cgcatcggta tccaaatgaa cttgaaagca
     2521 caaggtatcg acgagaaaga actcaaagaa cactctcgcg aattggctct tcttgcctac
     2581 gaagatcaat gtaccccagc taacccacgt ctagcaatgg ttgaccacat gcaagaaatc
     2641 atcgaagatg cctactacgg ttacaaagaa cgtccaggtc gcatcaagta aggattttcg
     2701 tcacgataca tcgttaaagc tccttgccta actttagtta tgtctacgtc gctttgcctt
     2761 gtctcgttta gaaaatcatt ccttagtgat ttagcttcac cttcgtcaat ctgcctagaa
     2821 agacttagga ctagaaaaaa gtctaggtag gagtagcaaa tcgtatccta ctcagttgaa
     2881 cggagtatga tttataggta aattgcctcc aaatatcgta agacaatcct ctattgaaaa
     2941 ataggggatt gtttgtttag aaataatggt ggagatcctg taaaaagcga aagtggttgg
     3001 aaagttaggg tttagccgag aaaaagagac ttttctatct atctttcaca attttctgtc
     3061 aatttgtggt agaatagaaa aaatagattt tttatgaggg ataccatgac attagtatat
     3121 caatcaacac gcgatgctaa aaatactgta tcggctagtc aggcgatatt gcagggcttg
     3181 gcgaccgacg gtggtttgtt tacaccgatt tctattccag cagttgactt ggacttttct
     3241 gttctcaaag acgcttctta tcaagaagtt gccaagttga ttttgtcggc tttcttggac
     3301 gattttacgg cagatgagtt ggactactgt atcaacaatg cctacgatag caagtttgac
     3361 acaccagcta ttgccccagt ggttaagcta aaaggtcagt acaatttgga actcttccga
     3421 ggttcaacca ttgcctttaa ggatatggct ctgtccatcc tcccttactt gatgacgact
     3481 gcggcgaaaa agcatggttt ggaaaatgag attgtcattt tgaccgcgac ttcaggcgat
     3541 acaggtaagg cagctatggc tggttttgca gacgttcctg gcacgcaaat cattgtcttc
     3601 tacccacgtg acggggtatc taaggtccaa gaattgcaga tgactacgca gacaggggct
     3661 aatacgcacg tggtggccat tgacggtaac tttgacgacg cccagacaaa tgtcaaacgt
     3721 atgttcaacg atgaggctct ccgtgccaag ttggcagcga agaaacttca gttttcatct
     3781 gccaattcta tgaacatcgg ccgcttggtg ccacagattg tttactatgt ctatgcctac
     3841 gctcagctgg ttaagactgg cgagattgcg gcgggcgaca aggtcaactt caccgttcca
     3901 acaggaaact ttggaaacat cttggcggct tattacgcca aacaaatcgg tctgccagtt
     3961 ggcaagctca tctgtgcttc caacgacaac aatgtcctaa ccgacttctt ctcgactggc
     4021 gtttacgaca agaaccgtac cttccgcgtg accaccagtc cgtccatgga catcttggtg
     4081 tcttctaact tggagcgctt gattttccat ctctttgaca atgacgctgc aaaaacagcg
     4141 gagctgatgg aagccttgaa cacagctggt cagtatgata ttcaaggggc tgacgcggat
     4201 atcctctctc tctttgctgc cgcctttgcg acggaagaag aaacggctgc ggaaatcaag
     4261 cgagtctatg acgagtcaga ctacattgaa gacccacata cggctgttgc ctcagctgtc
     4321 tataaacagt atgtggagca aacaggggac caaactccga ctgtgattgc ttctacagca
     4381 agtccttaca agttcccagt agttgcggtt gaggctgtga caggccagtc aggtttgtct
     4441 gactttgaag cccttgcaaa attgcatgag atttcaggtg tagctttgcc accagctgtg
     4501 gacggcttgg aaacggcacc tgtccgccac aatactgttg ttgcggcagc cgatatgcag
     4561 gctgaagtag agcgttattt gggtgtttaa tttcgattta ttttatgaca aactgctcat
     4621 tttgaacagt ttgttttctt tttgctgttt aaattaaaat ttacagataa ttcaaagaat
     4681 gatatactat ataggaatac ttgtagatga ggtggcgtat ggcacaagaa caggagaaaa
     4741 tctccagaga aaa
//
LOCUS       DASGBY010000136         4616 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.137, whole genome shotgun sequence.
ACCESSION   DASGBY010000136 DASGBY010000000
VERSION     DASGBY010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4616
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.137"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..642)
                     /locus_tag="U1396_001747"
     CDS             complement(<1..642)
                     /locus_tag="U1396_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM5342912.1"
                     /translation="MISNEQYDYLRAHPTFERLTRDSFDQLAKHIRFRKIPKGQIFFY
                     AEDPRDYLFVLYKGYARIEQYDETDSFTYLDYIRQGGAFPFGDMFQDKPYHYTAIAIT
                     DLEYFIVPMVLFETLSKINPSQMVYICQKLSKVLRFQELRLRNAMRSKASDRVVQALA
                     LLYWDMCQRDQFATLPFEIHIQEISRLAATTRETVSHVLKQLKQDGKIAYSHKQ"
     gene            complement(1249..2166)
                     /gene="whiA"
                     /locus_tag="U1396_001748"
     CDS             complement(1249..2166)
                     /gene="whiA"
                     /locus_tag="U1396_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEM5342913.1"
                     /translation="MSFTVQVKEELLLQSSQNKSELSAIIKLSGSLGLASSGLTLSIS
                     TENAKIARHIYELLLHFYQIKAEIRHHQKPNLKKNRVYAVLIEDGVNEILNDLHLADS
                     FFGLETGISPLVLENDSWSQAYLRGAFLAAGSVKDPEKGKYQLEIASVYSDHANDLAN
                     LMQKFLLDAKVIERSKGTITYLQRAEDIMDFLLVIGAEETKTEFENVKLLREARNDLN
                     RATNAEAANIAKTVNASMKTINNIIKIMDTIGLDQLSGDLQEIAQLRIQHPDYSIQQL
                     ADSLTVPITKSGVNHRLRKINKIADELTD"
     gene            complement(2163..3137)
                     /locus_tag="U1396_001749"
     CDS             complement(2163..3137)
                     /locus_tag="U1396_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HEM5342914.1"
                     /translation="MRKPKITVIGGGTGIPVILKSLRDKDVEITAIVTVADDGGSSGE
                     IRQALQVTPPGDLRNVLLAMSDMPKLYEQIFQYRFADSDGPLAGHPLGNLIIAGISEM
                     QGSTYNAMRLLTRFFHTTGRIYPSSEQALTLHAIFTDGTEVAGESKISKHNGMIDHVY
                     VTNSYNDDEPKASRQVVETIMESDMIVLGPGSLFTSILPNLMISDIGKALKETKAEVT
                     YVCNIMTQRGETEFFSDADHVAVLNAHLAEQFIDTVLVNIEPVPQEYMNSNQFDEYLV
                     QVKHDFAGLQKQANRVISSNFLRLENGGAFHDGDLVVEELLKILQVRP"
     gene            complement(3134..4021)
                     /gene="rapZ"
                     /locus_tag="U1396_001750"
     CDS             complement(3134..4021)
                     /gene="rapZ"
                     /locus_tag="U1396_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEM5342915.1"
                     /translation="MSDKLHLVIVTGMSGAGKTVAIQSFEDLGYFTIDNMPPTLLPKF
                     LELIRHSQDNNKIALVVDMRSRSFFSEIREVLDEIEGAEDLDFKVLFLDATDNELVAR
                     YKETRRSHPLAADGRVLDGIQLERELLAPLKNMSQNIIDTTELTPRNLRKAISEQFAS
                     QDNQPSFRIEVMSFGFKYGLPLDADLVFDVRFLPNPYYKLELRNLTGLDAPVFDYVME
                     HQESEEFYSHLLGLIEPILPGYQKEGKSILTIAVGCTGGQHRSVAFAKRLADDLEKNW
                     NVNRSHRDKDRRKETVNRS"
     gene            complement(4043..4420)
                     /locus_tag="U1396_001751"
     CDS             complement(4043..4420)
                     /locus_tag="U1396_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEM5342916.1"
                     /translation="MKTIHTDKAPAAIGPYVQGKVVGNFLFASGQVPLSPETGEVVGE
                     TIQEQTEQVLKNIAAILSEAGTDFDHVVKTTCFLKDMNDFVAFNEVYKTAFSADFPAR
                     SAVEVARLPRDVKVEIEVIAVID"
BASE COUNT         1383 a         1088 c          839 g         1306 t
ORIGIN      
        1 ctgtttatgg ctataagcaa ttttaccatc ctgcttcagt tgcttcaaaa catggctaac
       61 cgtttcccgt gtcgtagctg ctaaacgcga aatctcttga atatgaattt caaatggcaa
      121 ggtagcaaac tgatcgcgct ggcacatatc ccaataaaga agagccaagg cttgaacgac
      181 tcgatctgat gccttggaac gcatcgcatt tcgcaagcgc aactcttgaa aacgaagcac
      241 tttggataat ttttgacaga tataaaccat ttgactcgga tttatcttcg acaaggtttc
      301 aaacaagacc atcggtacaa taaaatactc taggtccgtt atggcaatgg cggtataatg
      361 ataaggtttg tcctgaaaca tatctccaaa aggaaaggca ccaccctgcc gaatatagtc
      421 caaatacgta aaactatccg tctcatcata ttgctcaatc cgagcataac ccttatacaa
      481 tacaaataga taatctctag gatcctctgc gtaaaaaaag atttgcccct tgggaatctt
      541 tcgaaaacga atatgcttag ctaattgatc aaagctatca cgtgtcaaac gttcaaaagt
      601 tggatgtgcc cttagataat catattgttc gttgcttatc atcaaaactc ctttctagct
      661 aaagtatcct tctatctatt ttaacatata ttaacgttct atgctaatca ttactaaaaa
      721 attcataaaa cagggaggag gctgggcaaa aagcccagca ccgcttctca aagttagtgt
      781 caacatctca gcgcagtggt tgattaggtt taacagtcca gtggactgtt aaaggttgga
      841 gataggattt gcgaagcaaa tctcagcaat tcgtgtttta cactccaaat ctaaccctta
      901 cgactgatgc gaacagagtt cgcttcatct ccaacctcca acagtcacta ctctgactgt
      961 tggagctatg cgggggtggg agtgaaacag tctggggata gactgtttca gctcaacaac
     1021 tggaaatatg aacttgttga cgaactcttc tatgaatggc tgagttcttt cagactccca
     1081 tcacaactaa tacaaaaaac tggtcctctc gaaccagtct ttgtatcgtc gaatgaatta
     1141 actttcagac aaggaactga ggtgcaagca atactagagt acggcaagcc gagagtaacg
     1201 atgtatcaaa gttaattcaa atgactataa cattctatgt atacctatct agtcagtcaa
     1261 ttcatccgca atcttattga ttttccgcaa acgatggttg acaccacttt tagtgatcgg
     1321 taccgttaga ctatccgcca attgctgaat ggaatagtct ggatgctgaa ttcgcaactg
     1381 ggcaatctcc tgcaagtcac ctgacaactg atctagaccg atagtatcca taattttgat
     1441 aatattattg attgttttca tactagcatt gaccgtcttt gcaatattag cggcttccgc
     1501 atttgtagct cgatttaggt cattgcgagc ttcacgaagc aatttaacat tctcaaattc
     1561 tgtctttgtc tcttctgctc caatcaccaa aagaaaatcc ataatgtcct ctgcacgttg
     1621 cagataggta atggttccct tacttcgctc aatgactttg gcatctaaaa gaaatttctg
     1681 catcagattg gccaggtcat tggcatggtc actatagaca gaagctattt caagctggta
     1741 ttttcccttt tcaggatcct taacagagcc tgccgctaaa aatgctccac gaagataggc
     1801 ttgactccac gaatcatttt ccaaaaccaa gggagaaatc cccgtctcta atccaaagaa
     1861 gctatcagcc aaatgcaaat cgttcaatat ctcattcacg ccgtcttcta tcaaaactgc
     1921 atacacacga ttctttttga gattaggttt ttgatgatgg cgaatctcag ccttaatctg
     1981 gtagaaatgg agtaacagtt cataaatgtg acgggcaatc tttgcatttt ccgtgctgat
     2041 agaaagagtc aaacctgatg aagctaagcc caaactacct gataatttga taatggcaga
     2101 tagctcgctc ttattttggc tagactgaag cagcaattct tcctttactt gtactgtaaa
     2161 actcatggcc gcacctgcaa aatcttgagc aactcttcta ccaccaagtc accatcatgg
     2221 aaagctccgc cattttccaa acgaagaaaa ttcgaagaaa tcacacgatt agcttgtttt
     2281 tgcaaacctg caaaatcgtg ttttacctgt accaagtatt catcaaactg gttgctattc
     2341 atatactctt gtggaactgg ctcaatattg accaaaactg tatcaatgaa ttgttcagct
     2401 aggtgagcat tgagaaccgc cacgtggtcc gcatctgaga aaaactcagt ctctccccgt
     2461 tgggtcataa tgttgcacac ataggtcact tcagccttgg tttcttttag ggctttgcca
     2521 atgtcagaaa tcattagatt cggcaagatt gaggtaaaaa gagaacccgg tccaagtaca
     2581 atcatgtcac tttccataat cgtttcaact acctggcgac tggctttcgg ttcatcatca
     2641 ttataagaat ttgtcacata gacatgatca atcatcccat tatgcttgga aatcttgctc
     2701 tcacctgcca cctcggtccc gtctgtaaaa atagcatgaa gggtcaaggc ctgttcgcta
     2761 gatggataaa tccgccctgt cgtatggaaa aagcgcgtca acaacctcat cgcattgtag
     2821 gttgaaccct gcatttctga aataccagca atgatgagat tccctagcgg atgaccagcc
     2881 aagggtccat ctgaatccgc aaaacgatac tggaaaattt gttcataaag tttgggcata
     2941 tccgacatag ccaataggac gttacgcaaa tcacctggag gggtcacctg caaagcctga
     3001 cggatttccc ccgaagatcc tccgtcatca gctaccgtca cgatagcggt aatctctaca
     3061 tccttatccc gcaaactctt caaaatgact ggaataccag tcccgccccc gataactgta
     3121 atttttggtt ttctcatgag cggttgaccg tctccttccg tctgtcctta tcacgatgac
     3181 tacgattgac attccaattt ttctctaaat cgtctgccaa acgtttagca aaggctacgc
     3241 ttctatgttg accgcccgtg caaccaacag caatcgttag aattgatttt ccttccttct
     3301 gataaccagg aagaatcggt tctatcaagc cgagcaaatg actataaaac tcttccgatt
     3361 cttgatgctc catgacatag tcaaagacag gagcatctag accggtcaga ttacgcaact
     3421 ccaacttgta gtagggattt ggtaagaacc gaacgtcaaa aaccaagtct gcatccagag
     3481 gtagtccata tttgaaacca aaggacatca cttctatgcg aaacgacggc tgattatctt
     3541 gactagcaaa ctgctccgag attgccttac ggagattacg aggagtcagc tctgtcgtgt
     3601 caataatatt ttgactcata tttttcaagg gagccaaaag ttcacgctct agctgaatcc
     3661 cgtccaaaac acgaccatca gccgccaaag gatgggaacg acgagtttct ttatagcgag
     3721 caaccaattc attatccgtc gcatccaaga ataggacttt aaaatctaaa tcctctgccc
     3781 cctcaatctc atccaacacc tctcgaatct ccgagaagaa ggagcgactc cgcatatcta
     3841 caacaagagc aatcttattg ttatcctggc tgtggcgaat caattctaaa aattttggca
     3901 agagagtcgg tggcatatta tcaatggtaa aatagcccaa gtcctcaaaa gactgaatgg
     3961 ctaccgtctt accagctccc gacatccctg tcacaattac taaatggagt ttgtccgaca
     4021 tgacattccc tccttttctc ttctaatcaa taactgcaat aacttcaatc tcaaccttaa
     4081 catcacgtgg caaacgagca acttccaccg ctgaacgagc tggaaaatct gctgagaaag
     4141 ctgttttata aacttcatta aaagctacaa aatcattcat atcttttagg aaacaagtcg
     4201 tcttcaccac atggtcgaag tctgttcctg cttctgataa aattgctgcg atatttttca
     4261 agacttgctc agtctgctcc tgaatggttt caccaaccac ttcaccagtt tcaggtgaca
     4321 aaggaacttg accagaggca aataggaaat ttccaacaac cttcccttga acgtatgggc
     4381 caattgctgc aggtgcctta tctgtgtgaa tggttttcat atctctatct ccttttaatt
     4441 ttttatatct attatagcac aagttctgta taaaacagct cacctactac tatcctacac
     4501 ctattttctt ttataaaaaa ggaattgaga tagtatcacc aacatgaaat aaggcaatcc
     4561 ataatctact tctaaaacta cctgcttata cccccaaaaa aaaaggccta ttcagc
//
LOCUS       DASGBY010000137         4593 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.138, whole genome shotgun sequence.
ACCESSION   DASGBY010000137 DASGBY010000000
VERSION     DASGBY010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.138"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..512)
                     /locus_tag="U1396_001752"
     CDS             complement(<1..512)
                     /locus_tag="U1396_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HEM5342917.1"
                     /translation="MDTKSLLVTGYRHTDLGIFSEKDPRLHIIKSAIRRNFIRFLEEG
                     VSWFILTGQLGFEYWSLEVLEDLRAEGYQLSIATIFPFENHGEQWNEANQAKLARFKQ
                     VDFVKYAYPRYENPGQFRDYNQFLLDNTTGCYLFYDSENETNLKYLYHMVLKKEGYNR
                     KTLTFEELNE"
     gene            578..1195
                     /gene="recU"
                     /locus_tag="U1396_001753"
     CDS             578..1195
                     /gene="recU"
                     /locus_tag="U1396_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HEM5342918.1"
                     /translation="MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYL
                     AHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQASTTDYSGVFKRHYIDFEAKET
                     RQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
                     SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN"
     gene            1164..3350
                     /locus_tag="U1396_001754"
     CDS             1164..3350
                     /locus_tag="U1396_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HEM5342919.1"
                     /translation="MVNLLKTTTIKKALLITANILLAGAIIACLAGAALVVYYIQSAP
                     ELTEESLTATVSSKIYDKNGNLIADLGAEKRSSAKTEEIPTDLVNAIVAIEDQRFFNH
                     RGVDVIRIAGSLINNLSGGRLQGGSTLDQQFIKLTYFSTSVEDQNLKRKIQEAWLATQ
                     LERRNTKQEILTYYINKVYMSNGNYGMKTAALAFYGKELKDLTLPQLALLAGMPQAPN
                     QYDPYTNPEDAKARRDLVLAEMLEEKYIDNPQYEQAVLTPVTDGLQPLSNAAAYPAYM
                     DNYLKQVVEEVEAKTGYNLLTTGMDVYTNVDPAAQQQLWNIYNTDMYVSYPDDLLQVA
                     STVVDVSNGKVVAQLGGRKQETNVSFGTNQSVETNRDFGSTMKPITDYAPAFENGIYT
                     STADLILDGPYNYPGTPTPVNNWDKQYYGNISVKTAIQYSRNVTAVKALEATGLENAL
                     KFLNSVGINYPDIHYSNAISSNTSDTSSKYGASSEKMAAAYAAFANGGTYYAPQYVNK
                     IVFSDGTVTEYAPKGTKVMSAETAYMMTDMMKAVMSYGYGLNASVSGVPMAGKTGTSN
                     YTDSETDTILASIPEANYSYMVVPDENFVGYSSQYAMAVWTGYTNRMTPILDNSMRIA
                     TDVYHNMMLFMHSDYTATDWEMPSGLVRYGSNYYLRGSRSLSNAYNTYTSSSTSSSSS
                     TETSETTEATTTSSETSSGTATETATSSTETATTGNNPATGQTDGQ"
     gene            3409..4116
                     /gene="rsmG"
                     /locus_tag="U1396_001755"
     CDS             3409..4116
                     /gene="rsmG"
                     /locus_tag="U1396_001755"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004260112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEM5342920.1"
                     /translation="MKPEVFYKTLADQGIQLTDQQKHQFHRYFQLLVEWNEKINLTAI
                     TEESEVYLKHFYDSIAPILQGHIQNEPLRLLDIGAGFPSLPMKIIFPQLDVTIIDSLN
                     KRINFLHLLAEELELEGVHFYHGRAEDFAQDKNFRAQFDLVTARAVARMQILSELTIP
                     YLKLNGKLIALKASSAEDELTQAKNALNLLFAKVIENHDYTLPNGDPRTLTIVEKKKE
                     TPNKFPRKAGLPNKRPL"
     gene            complement(4306..4509)
                     /locus_tag="U1396_001756"
     CDS             complement(4306..4509)
                     /locus_tag="U1396_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEM5342921.1"
                     /translation="MVQGTVKWFNAEKGFGFIAQENGPDVFAHFSEIQSNSFKSLEEG
                     QKVTFEVEQGQRGLQATNITKIG"
BASE COUNT         1434 a          983 c          838 g         1338 t
ORIGIN      
        1 tcctcattca attcctcaaa ggtaagcgtt tttctattat atccttcttt ctttaagacc
       61 atgtgatata aatatttcaa attggtttca ttttcagaat cgtaaaataa ataacaacct
      121 gtcgtattat ccagtagaaa ctggttatag tctctaaact gccctgggtt ttcatagcgt
      181 ggataggcat actttacaaa atcaacctgc ttaaaccgtg ctaactttgc ttggttagcc
      241 tcattccact gttcgccatg gttttcaaat ggaaatattg ttgcaatact cagttgatat
      301 ccctcggctc gtaaatcttc taagacttct aaggaccagt attcaaaacc caattgacct
      361 gtcagtataa accaactaac tccctcttct aaaaaacgaa taaaattcct acgaattgca
      421 gatttaataa tgtgcagtcg aggatctttt tctgaaaaaa ttcccaggtc tgtatgtcta
      481 taacctgtta ccaaaaggct cttagtatcc atttcttgta ctcttttcgc taattatggt
      541 ataatatgct gatattattt tatcaagaag gagttctatg gtcaattatc ctcataaggt
      601 gtcaaaaaaa atcaatagaa ccagtcctat ttcatcccag cgagtaaact ttgctaatcg
      661 cggaatgtct tttgaggccg ctatcaacga tagcaatcaa tattaccttg cgcacgatat
      721 tgctgtcatt cacaagaagc caactcccgt gcaaattgta aaagttgatt accccaaacg
      781 gagccgtgct aagattgtcg aagcatactt tcgacaggca tctaccacag actactctgg
      841 tgtttttaaa agacattata ttgattttga agcgaaagag acacgccaaa aagcatccat
      901 gcccatgaaa aattttcatg cgcatcagat tgaacacatg aaacaggttg ttaaacaagg
      961 tggtatttgt tttgtccttc ttcacttttc aacattaaaa gaaacctatc tcttgccagc
     1021 cactcatttg atcgaatttt atcaagtaga catgggtagt aagtcgatgc ctctaacctt
     1081 tattcgacaa tacggctttg agattcaaat ggggcgtttc cccagcatcc catatctgga
     1141 aatcgttgaa aaaaatctat taggtggtga atcttttgaa aactacaaca attaaaaaag
     1201 ctcttctaat cactgcaaat attttacttg cgggggctat cattgcctgc ctggccggag
     1261 ctgcattggt tgtttactac atccaaagcg ctccagaatt gacagaagaa tctttgacag
     1321 caactgtgtc aagtaaaatt tacgataaga acggaaatct tattgcagat ttaggagcag
     1381 aaaaacgttc gagtgccaag actgaagaaa ttccaacaga cttggtaaat gcgattgtcg
     1441 caatcgaaga ccaacgcttc ttcaatcata gaggtgttga cgtgattcgt attgcaggtt
     1501 ccctgattaa taacctgagt ggtggacgtt tgcaaggtgg ctcgacactt gaccagcagt
     1561 ttatcaagct gacttatttc tcgacatccg tagaagatca aaatctaaaa cggaaaattc
     1621 aagaggcttg gctagctact caattggaac gtcgcaatac caaacaagag attttgacct
     1681 actacatcaa caaggtgtat atgtcaaatg gtaattacgg tatgaagact gctgctcttg
     1741 ctttttatgg aaaagagtta aaagatttga ctcttcctca attagctctt ttagcaggaa
     1801 tgccccaagc gccaaaccaa tatgatcctt ataccaatcc agaagatgca aaagcacgtc
     1861 gcgatttggt attggctgag atgctggaag aaaagtacat tgataatccc cagtatgaac
     1921 aagctgttct aacacctgta acagatggtt tgcaaccact atctaatgca gctgcttatc
     1981 ctgcttatat ggacaactat ctgaaacaag tcgttgaaga agttgaagca aaaacaggtt
     2041 acaacttgct gacaacaggg atggatgtct atacgaacgt cgatcctgcc gcccagcagc
     2101 aactttggaa tatctacaat acagatatgt atgtcagcta tccagatgat ttattgcagg
     2161 tagcttcaac ggttgtggat gtttctaatg gtaaagtcgt tgcgcaatta ggtggtcgta
     2221 aacaggaaac aaacgtctca tttggtacca accaatccgt tgaaaccaac cgcgacttcg
     2281 gttctacaat gaagccaatc acagactatg ctcctgcttt tgaaaacggc atttatacat
     2341 ctacagcaga tttaatctta gacggtcctt ataactatcc tggtacacca actcctgtca
     2401 ataactggga taaacaatac tacggtaata tctctgttaa gactgccatt cagtattctc
     2461 gaaatgttac cgccgttaaa gcattggaag ctacgggctt agaaaatgcc ttgaaatttt
     2521 tgaatagcgt tggtatcaat tatccagata ttcattactc taatgctatt tcaagtaata
     2581 catccgatac tagcagtaag tatggagcaa gtagtgaaaa aatggctgct gcctacgctg
     2641 cttttgccaa tggtggtact tactacgctc cacagtatgt caataaaatt gtctttagtg
     2701 atggaacagt aacagaatat gctcctaaag ggaccaaagt catgtctgcc gaaacagcct
     2761 acatgatgac cgatatgatg aaggctgtta tgtcttacgg ttatggatta aacgcttctg
     2821 ttagtggtgt tcctatggcc ggtaaaacag gtacatcaaa ctataccgat agcgaaacgg
     2881 atactattct agcttcaatt ccagaagcaa attatagtta catggtcgtt cctgatgaaa
     2941 acttcgttgg atattctagt cagtacgcaa tggctgtttg gaccggatat accaatcgta
     3001 tgactcctat ccttgataac agcatgcgaa ttgcaacgga tgtctaccac aatatgatgc
     3061 tctttatgca ttcggactat acagctaccg attgggagat gccaagcgga ctcgtacgtt
     3121 acggttccaa ctactatctc agaggtagtc gctcactctc caatgcttat aatacttaca
     3181 ctagctctag tacaagttct tctagttcga ctgaaactag tgaaacaacc gaagcgacga
     3241 caacatcaag cgaaacatca tctggaactg caaccgagac tgcaacttct tcaactgaaa
     3301 ctgcaacaac aggaaacaat cccgcaacgg gacagacaga tggtcaataa gaaaattccc
     3361 agactcttct gggtttttct tttgcttaaa ttatgataag ataagattat gaaacctgaa
     3421 gtattttata aaaccttggc agaccaaggt attcaattaa ctgaccaaca aaaacaccaa
     3481 tttcatcgct atttccaact attagtggaa tggaatgaaa aaatcaatct gacagctatt
     3541 accgaggaaa gcgaagtcta tctgaagcat ttctacgatt ctatcgctcc aatcctgcaa
     3601 ggccatattc agaacgaacc tcttcggctt ttagatattg gagctggatt ccctagccta
     3661 cctatgaaga ttatctttcc gcaactagat gttaccatca ttgattctct taataaacga
     3721 attaactttt tacatttgct tgccgaagaa ctagagctcg aaggtgttca tttctatcat
     3781 ggtcgtgcag aagactttgc acaagataag aacttccgtg cacaatttga ccttgtcaca
     3841 gcacgcgcag ttgcccgcat gcagattctt tctgaattga ctattcctta tttgaagctc
     3901 aacggaaaat taatcgcact caaggcgtcc agcgcagaag atgaattgac ccaagcaaaa
     3961 aatgcactca atctcctctt cgcaaaagtc atcgaaaacc acgactatac tcttccaaat
     4021 ggcgaccctc gaacattgac catcgtcgaa aagaaaaagg aaactccaaa taagtttcca
     4081 cgcaaagctg gtctgccaaa taaaagaccc ctttaaacat aagaaaagag gctgggcaaa
     4141 aagctcaacc tcgcttctca gagttcgtgt caacatctca gcgcagtggt tgattggcag
     4201 atttgttcgt gttttacact ccaaatctga cctaatcaac tgtgcggagg cgggaagacg
     4261 aactcttttt ttgaccagtc gagttctttc ccgctccctc ttttattatc caatttttgt
     4321 aatattggtt gcttgaagac cacgttggcc ttgctccact tcaaatgtca ctttttgacc
     4381 ctcttccaac gatttgaaac tattagactg aatttcagaa aagtgtgcaa atacatctgg
     4441 accgttttct tgagcaataa aaccaaatcc cttttctgca ttaaaccatt taactgtacc
     4501 ttgtaccatt tgtgttacct ctttttattt atttgtaaaa cttatcaaga ggaaaaacaa
     4561 aagatgaaac tgatacttaa actctaaatt tat
//
LOCUS       DASGBY010000138         4591 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.139, whole genome shotgun sequence.
ACCESSION   DASGBY010000138 DASGBY010000000
VERSION     DASGBY010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.139"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            45..1595
                     /gene="guaA"
                     /locus_tag="U1396_001757"
     CDS             45..1595
                     /gene="guaA"
                     /locus_tag="U1396_001757"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEM5342922.1"
                     /translation="MTKQDVQKIIVLDYGSQYNQLISRRIREFGVFSELKNHKITAEE
                     VRAINPIGIVLSGGPNSVYAENAFDIDPEIFELGIPILGICYGMQLITHKLGGKVVPA
                     GEAGNREYGQSNLQLKTESALFAGTPEEQLVLMSHGDAVTEIPADFHLVGLSADCPYA
                     AIENTERRIYGIQFHPEVRHSVYGNDILKNFAFGICGAKGDWTMENFIETEIEKIRQT
                     VGDKKVLLGLSGGVDSSVVGVLLQRAIGDQLTCIFVDHGLLRKNEGDQVMEMLGGKFG
                     LNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYVFDDEASKLTDVEFLAQGTLYTD
                     IIESGTDTAETIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTALGMPDEVVWRQ
                     PFPGPGLAIRVMGEITEEKLQTVRESDAILREEIAKAGLDRDVWQYFTVNTGVRSVGV
                     MGDGRTYDYTIAIRAITSVDGMTADFAKLPWDVLQKISVRIVNEVDHVNRIVYDITSK
                     PPATVEWE"
     gene            complement(1757..2806)
                     /gene="mcrC"
                     /locus_tag="U1396_001758"
     CDS             complement(1757..2806)
                     /gene="mcrC"
                     /locus_tag="U1396_001758"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methylcytosine-specific restriction
                     endonuclease system specificity protein McrC"
                     /protein_id="HEM5342923.1"
                     /translation="MIPVQNIYYMLSYAFKILHKQEYKRIATEEFKNAADLLAEIMII
                     SLSIQVKRGLGREYRSQTESLSALKGKINISESLTPPNWRRKQLVCQYDDFSLDSRMN
                     RIIKASIEILLKADISRDRKKKLRKLLVFFGEVSKINLHSINWNLQYNRNNQSYQLLM
                     SICYLVVNGLIHTEREGNKKLMNFLDERRESLLYEKFILGYYKKHYPQIQVTASQIPW
                     ALDDGFGEMLPIMQSDIYLKYKDTILIIDAKYYSSNTQIRFDKRTLHSNNLYQIFTYV
                     KNQAYRLSDSNDTVAGMLLYAKTDIDIQPNQVYQMHGNQISVKNLDLNLQFASIAEQL
                     DDIITSHFVSPPKRY"
     gene            complement(2803..4500)
                     /locus_tag="U1396_001759"
     CDS             complement(2803..4500)
                     /locus_tag="U1396_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM5342924.1"
                     /translation="MDEQNQFNWVNFYKEFAWKLLDYKDNRAELVEKVKAIYTKTKIH
                     MPTLEKDNHLIDIDPFTIFGLFNKQIKEENRIKILTAIAELFNLQTEIPSSFESIPVL
                     MNQNATFYYFIGDRDEKDIDDLWELFIAALTYSKEPTAEKKEKFSHYFDLAINKKGNG
                     NSKITMALYWIAPDFFLNLDSRNKWYVYESGEIPTDVIKKLPKMKSKISADDYFYISD
                     SMHHYLNSAESKLKDFKELSSMAWKYSKQINQEEKERSAGAISPLADETDTGNEIGSE
                     EVVEDSYTKNHFLSEVYMTEEEYDQLTSILQMKKNIILQGAPGVGKTFVAERLAFSLM
                     GKPDLERVMTIQFHQSYSYEDFIMGFRPSTSGFELRRGAFYTFCKKAESDKSHDYFFI
                     IDEINRGNLSKIFGELFMLIENDKRGKSLQLLYSDEQFSIPENLYIIGMMNTADRSLA
                     LLDYALRRRFAFFDIKPGFSTAGFKDYQTNLKNEKFDRLISCIEKLNQAISTEEVLGD
                     SFCIGHSYFCGLSAEVLDQGLLEAIVEYELIPLLKEYWFDEPTKIHDWSSKLRSAIQ"
BASE COUNT         1304 a          903 c          880 g         1504 t
ORIGIN      
        1 taactactag tatttgaatt tttttcaaaa cgaaagggaa aaacatgaca aaacaagatg
       61 tccaaaaaat tattgtattg gattatggta gccagtacaa ccaacttatt tcacgtcgaa
      121 ttcgtgaatt tggtgtcttt tcagaattga aaaaccataa aattacagct gaggaagttc
      181 gtgctatcaa tccaattggt atcgttcttt caggtggacc aaactctgtc tacgcagaaa
      241 atgcctttga tattgatcca gaaatctttg aattgggtat tcctatctta gggatttgct
      301 atggtatgca gttaattacc cataaattgg gaggtaaggt tgttcctgct ggtgaggctg
      361 gaaatcgtga atatggtcaa tcaaatcttc aactgaagac tgaatcagcg ctttttgctg
      421 gaacaccaga agaacagctt gtactcatga gccacgggga tgctgtaact gaaattcctg
      481 ctgatttcca cctggttggt ctgtctgctg actgccctta cgctgccatt gaaaacacgg
      541 aacgccgtat ctacggtatc cagttccacc cagaagttcg tcattccgta tatggaaacg
      601 atattttgaa aaactttgcg tttggtatct gtggagccaa aggcgactgg acaatggaaa
      661 acttcatcga aacagaaatt gaaaaaatcc gccagactgt tggggacaag aaagtcttgc
      721 tcggtttatc aggcggtgtg gattcatctg ttgttggtgt gcttcttcaa cgtgctattg
      781 gtgaccaatt gacctgtatc ttcgttgacc acggtcttct tcgtaagaat gaaggcgatc
      841 aagttatgga aatgttgggc ggtaaatttg gcctcaatat tattcgcgtc gatgctgcta
      901 agcgtttctt ggatctactt gctggcgtat ctgaccctga gaagaaacgt aaaatcatcg
      961 gtaatgaatt tgtttacgta tttgacgatg aagcgagcaa gttgactgat gttgaattcc
     1021 tagcgcaagg aacactttat accgatatta tcgagtcagg aacggatact gctgagacaa
     1081 tcaaatctca ccacaacgtt ggtggtctgc cagaagatat gcagttcaag ttgattgaac
     1141 cgctcaatac tctctttaag gatgaagttc gtgctctcgg tactgctctt ggtatgccgg
     1201 atgaagttgt atggcgccaa ccattcccag gaccaggcct tgccattcgt gtcatgggtg
     1261 aaatcactga ggaaaaactt caaactgttc gcgaatctga cgctatcttg cgtgaggaaa
     1321 ttgcaaaagc aggtcttgac cgcgatgtgt ggcaatattt cacggttaat actggcgttc
     1381 gctccgtagg tgtcatggga gatggtcgta cctacgacta caccatcgcc atccgtgcta
     1441 tcacttctgt cgatggaatg acagctgact ttgccaaact accatgggat gttcttcaaa
     1501 aaatctctgt ccgtatcgta aacgaagtcg accacgtcaa ccgcatcgtc tatgatataa
     1561 caagtaaacc accagcaaca gttgagtggg agtaaattag tccagtggac taatttaccc
     1621 gatgcctaaa aataaaaaag catcgctgat ctgggaaatc aattaaccag acgctccaaa
     1681 atataaaaaa acaatcaaag agtagtttag tgctactact ttgattgttt ttttgttttc
     1741 tagcttaaag ctctaactag taccgttttg gaggggatac aaaatgcgat gtaatgatgt
     1801 catccagttg ttcagcaata cttgcaaact gcaggtttaa gtctaaattt ttgacactaa
     1861 tctggtttcc atgcatttgg tagacctggt taggttgaat atctatatcg gttttagcgt
     1921 atagaagcat tcctgctact gtatcgtttg aatctgacag gcgataagcc tggtttttca
     1981 cataggtaaa aatttggtat agattatttg aatggagtgt gcgcttatca aagcgaatct
     2041 gtgtgttact agaataatat ttagcatcaa taatcaatat agtatcttta tatttgaggt
     2101 aaatatcact ctgcatgatg gggagcattt ctccaaaacc atcatctagt gcccaaggta
     2161 tctgagaggc ggtaacctgt atttggggat aatgcttttt ataatatcca agaatgaact
     2221 tctcatatag caaggattcc ctccgctcat caagaaaatt catcaatttc ttattcccct
     2281 ccctctctgt atgaattaat ccattcacca ccaaatagca gattgacatt agtaattgat
     2341 acgactgatt gtttcgatta tattgtaaat tccaattgat tgagtgcaga ttaatttttg
     2401 agacttctcc aaagaaaact aagagttttc tcaatttctt tttcctgtcc ctgcttatat
     2461 cagcttttag cagtatctca atgcttgctt tgataatgcg attcattcta ctgtcaagag
     2521 aaaaatcatc gtattggcaa acaagttgct ttctacgcca attcggaggt gttaaagatt
     2581 cagagatatt tattttacct ttaagtgccg agagtgactc ggtttgagaa cgatactctc
     2641 gaccaagtcc tcttttcacc tgtatcgaga ggctgattat cattatttcc gccagtaaat
     2701 ctgcagcatt tttaaattct tcagtagcga tccgtttata ttcctgctta tgaaggattt
     2761 tgaatgcgta ggatagcata tagtagatat tttggacagg tatcactgga tggcactcct
     2821 taacttacta ctccaatcat gaatttttgt cggttcatca aaccaatatt ctttcaagag
     2881 gggaatcagt tcatattcaa caatggcttc tagcaaacct tggtccagta cttctgccga
     2941 taaaccgcag aagtaactat gcccaataca gaagctatct cccagtactt cctctgttga
     3001 aatggcctga tttagctttt ctatacagga aatgagtcta tcgaattttt cgtttttcag
     3061 atttgtttga taatctttga atcccgcagt tgaaaaacct ggcttgatgt caaagaaggc
     3121 aaagcgtcgt ctcagtgcat aatcaagtag ggctaaactc ctatctgcgg tattcatcat
     3181 gccgatgata tatagatttt ctggaattga gaattgctca tccgagtaga ggagctgtaa
     3241 agacttgcct cgtttgtcat tttctatcag cataaacaat tcaccaaaaa ttttgctcaa
     3301 atttcccctg tttatttcat cgataataaa gaaataatca tgactcttgt cagactctgc
     3361 ttttttgcag aaagtataga atgcccctct tctcagctca aagccacttg tcgaaggtct
     3421 aaagcccatg atgaagtcct cgtaggaata gctttggtga aactgaattg tcatgaccct
     3481 ttctaaatct ggtttaccca ttaatgaaaa tgctaggcgt tctgcaacaa acgtctttcc
     3541 aactcctggc gctccttgta agatgatatt ctttttcatt tggagtatgg aggttaattg
     3601 atcatactct tcttctgtca tatagacttc tgataggaag tgatttttcg tatagctatc
     3661 ttctactacc tcttcactac ctatctcgtt tccagtatca gtttcatcag ccagtggaga
     3721 aattgctcca gcacttcttt ccttctcttc ttgattgatc tgtttagagt atttccaagc
     3781 catggatgat aattctttaa aatctttcag tttgctctct gcactgttta aataatgatg
     3841 catagagtcc gagatataaa aataatcatc ggcagaaatt tttgacttca tctttggtag
     3901 ttttttgatg acatcagtag gaatctcccc agattcgtat acataccact tatttctgct
     3961 atctaagttc aagaaaaagt caggagcaat ccaatacaag gccatcgtaa tcttgctgtt
     4021 gccatttcct ttcttgttta tagccaaatc aaaatagtgt gaaaattttt ctttcttctc
     4081 agccgtaggc tccttgctat aggtcaaagc agcaatgaaa agttcccata agtcatcaat
     4141 atctttctca tcacgatctc cgataaaata atagaaagtc gcattctgat tcatcagtac
     4201 tggtatactt tcaaaagagg atgggatttc cgtttggagg ttgaataatt ctgctatagc
     4261 tgtcagaatt ttaatgcgat tctcctcttt tatttgcttg ttgaagagtc caaatatcgt
     4321 aaaaggatca atatctatca ggtgattgtc cttttctaac gtgggcatat gtatctttgt
     4381 tttggtatag atagctttta ctttctcaac cagctctgct ctattatctt tatagtctag
     4441 taatttccaa gcaaattcct tataaaagtt tacccaattg aattgatttt gttcatccat
     4501 agtatcctcc aacggtgttg tatctacacc tattaaatta tgagttcgaa tttacctata
     4561 ttttatcatt aaacattcct gtcgtaaact t
//
LOCUS       DASGBY010000139         4499 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.140, whole genome shotgun sequence.
ACCESSION   DASGBY010000139 DASGBY010000000
VERSION     DASGBY010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.140"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            8..81
                     /locus_tag="U1396_001760"
     tRNA            8..81
                     /locus_tag="U1396_001760"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:42..44,aa:Met,seq:cat)
     gene            98..171
                     /locus_tag="U1396_001761"
     tRNA            98..171
                     /locus_tag="U1396_001761"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:132..134,aa:Ile,seq:cat)
     gene            178..267
                     /locus_tag="U1396_001762"
     tRNA            178..267
                     /locus_tag="U1396_001762"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:214..216,aa:Ser,seq:tga)
     gene            278..351
                     /locus_tag="U1396_001763"
     tRNA            278..351
                     /locus_tag="U1396_001763"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:312..314,aa:Met,seq:cat)
     gene            367..439
                     /locus_tag="U1396_001764"
     tRNA            367..439
                     /locus_tag="U1396_001764"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:400..402,aa:Phe,seq:gaa)
     gene            471..544
                     /locus_tag="U1396_001765"
     tRNA            471..544
                     /locus_tag="U1396_001765"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:505..507,aa:Ile,seq:gat)
     gene            557..644
                     /locus_tag="U1396_001766"
     tRNA            557..644
                     /locus_tag="U1396_001766"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:591..593,aa:Ser,seq:gct)
     gene            704..1540
                     /gene="mreC"
                     /locus_tag="U1396_001767"
     CDS             704..1540
                     /gene="mreC"
                     /locus_tag="U1396_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEM5342925.1"
                     /translation="MNKFSKLVVVVSIFLLLSFSLLFVTFSKGLQVPYLNNIVRVVVT
                     PIQSVISVPTRFFSEQKDVLTDLMNAYEENKQLKEAIMSLEGMAAENTSLKEENASLR
                     SSLGVVSDFPEKQLIPGSVLVRTPSSWSEHISINIGETRGVTSNALVVANGGLVGIVS
                     SLSSDSAVVTLFTNSDEFTKLPVKISVDSKEIYGILSGYDADTNSFIINQLNSADEIA
                     VGSNVVTSDLAGATPANVQIGKVLSVKSNSNSLNREVYVEPTASFSNIYSVLVVGQTN
                     AQ"
     gene            1530..2045
                     /gene="mreD"
                     /locus_tag="U1396_001768"
     CDS             1530..2045
                     /gene="mreD"
                     /locus_tag="U1396_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEM5342926.1"
                     /translation="MRNKMIEIFMFPILFFILLLDGQISTLVTNWSVGLFTISSHLVL
                     MLAIFYANYVSLGFSLFIFTLLGLVYDISYLNLIGIATTTLPLVLYCIYFFFQGAVSK
                     RGINILILLVAIFQFEFISYSFARIFHITNLSVFIFVFNKLLPSLLFNLVLFFVLQPL
                     FERLFGITNKT"
     gene            2130..3386
                     /locus_tag="U1396_001769"
     CDS             2130..3386
                     /locus_tag="U1396_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5342927.1"
                     /translation="MKKKILATIMLSTVVLSNANYVAVISANDVDSQIAAKNQQISEL
                     TAQQAEAQQQVDAIQGQVDAIVSEQAKLTEENTRLEAESQTLAADIERLSADIVSRDG
                     ALKEQARSAQVDGSASSYINTILDSKSIIDAVSRVNAMREIVSANNRMLEQQKADKEA
                     IVEKQKANQEAITTLAANRQKLEDDAQVLQVRQAELEAAKLNLAVQKATAEDEKNSLL
                     VQKAAAEEAARQAAARQAEYQAQQAALAQQQVASVSAPVVSTPVETTVTETFAAPTQT
                     VSQSTPTVSTPTTSTSSGSGSSAAANNARYDASSYPVGECTWGVKSQLSWVGPYWGDA
                     KQWLASARAEGFSTGSTPQVGAIAVWTGGYYGHVAVVTAVQSSTSIQVVESNYMGRRY
                     IGNHRGGYFNPTTTSEGAVYYIYPPY"
     gene            3489..4457
                     /locus_tag="U1396_001770"
     CDS             3489..4457
                     /locus_tag="U1396_001770"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM5342928.1"
                     /translation="MAFTDLKLFALSSNQKLAEQVSKKIGIPLGKSSVRQFSDGEIQV
                     NIEESIRGTHVYILQSTSSPVNDNLMEILIMVDALKRASAESVNVVMPYYGYARQDRK
                     ARAREPITSKLVANMLQTAGVNRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERR
                     GMVGDGYVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGDIKDK
                     TCILIDDMIDTAGTICHAADALADAGATAVYASCTHPVLSGPAMDNISKSAIKKLVVL
                     DTIEIAEDRLIDKIEHISTAELLAEAIIRIHEKRPLSPLFEASRVK"
BASE COUNT         1265 a          759 c         1024 g         1451 t
ORIGIN      
        1 ttattttggc ggtgtagctc agctggctag agcgtccggt tcatacccgg gaggtcgggg
       61 gttcgatccc cttcgccgct atatactctt gtttactgga cctttagctc agctggttag
      121 agctctcggc tcataaccga gcggtcgtag gttcaagtcc tacaaggtcc atatattgga
      181 ggattaccca agtccggctg aagggaacgg tcttgaaaac cgtcaggcgt gtaaaagcgt
      241 gcgtgggttc gaatcccaca tcctcctttt ctactaccgc gggatggagc agctaggtag
      301 ctcgtcgggc tcataacccg aaggtcgtag gttcaaatcc tgctcccgca atttctttaa
      361 gaatttggct cggtagctca gttggtagag caatggattg aagctccatg tgtcggcggt
      421 tcgattccgt ctcgcgccat taatttaact ttgtccaagt ttattatctt gggcgcgtag
      481 ctcagatggt tagagcgcac gcctgataag cgtgaggtcg gtggttcgat tccactcgtg
      541 cccatattat attgatggag aattactcaa gaggctgaag aggacggttt gctaaatcgt
      601 taggtcgggt aactggcgca agggttcgaa tcccttattc tccgtagtga acgagattat
      661 cgcttgatat tctcgtttta ttgtatctta gtgaggatcc attatgaata aattttcaaa
      721 attagtagta gttgtttcta tctttttatt actgtcattt tctcttttgt ttgtgacttt
      781 ctctaaggga ttacaggtac catatttaaa taatatcgtt agggttgttg taacgccaat
      841 tcaatcggtt atttcagtac ctactagatt tttttctgag cagaaagatg tcttgacaga
      901 tttgatgaac gcttacgagg aaaataaaca attaaaggaa gctattatga gccttgaagg
      961 gatggctgct gaaaatacta gcttgaaaga agagaatgca tcgcttcgta gcagtttagg
     1021 tgtggtatct gattttcctg aaaaacaact tattccagga tcagttttag tgaggactcc
     1081 ttcatcgtgg tcggagcata tttcaattaa tattggtgag actaggggtg tgacatctaa
     1141 tgcacttgtg gttgctaatg gtggattagt tggcatcgtt agttcattga gttcagattc
     1201 ggcggttgtt accttattta cgaattcgga tgaattcacg aagttgcctg tgaaaatttc
     1261 tgttgattct aaagaaattt atggtatttt atcgggctat gatgcagata caaatagttt
     1321 tatcattaat cagttgaact cagctgatga aattgcagtg ggtagcaatg ttgtaacgag
     1381 tgatttggct ggtgcgactc cggcaaatgt ccaaattggt aaagttttat cggttaaatc
     1441 aaatagtaac agtttaaata gagaagtata tgttgagccg acagctagtt tttcaaacat
     1501 ttattcggtt ttagtggtag gtcaaacaaa tgcgcaataa aatgatagaa atattcatgt
     1561 ttcccatctt gttctttatt ttattacttg atggacagat ttcaacgttg gtaacaaatt
     1621 ggtcggtcgg attatttact atttcaagtc atttggtact tatgttagct attttttatg
     1681 ctaactatgt atctcttggt ttttcattat tcatatttac tttgctaggt ttggtatatg
     1741 atattagtta tcttaatctg attggtattg ctactacaac tcttccttta gttttatatt
     1801 gcatctattt cttctttcaa ggtgctgtca gcaagcgagg aattaatatt ttgattttac
     1861 tagtagctat ttttcaattt gaatttatta gttattcatt tgctcgtatt tttcatataa
     1921 caaacttgtc tgtatttatc tttgttttta ataaattact tccaagttta ctattcaatt
     1981 tggtcttatt tttcgtgtta caaccattat ttgagcgttt atttggaata acaaacaaga
     2041 catagaaatg taataattgc gtaatatact tacgcgattt ttttgataaa atgagagagt
     2101 cagaaagtat agaggagtta tgttcggata tgaagaaaaa aatcttggct acaattatgt
     2161 taagtacagt cgttctatct aatgctaatt atgtagctgt gattagtgcg aatgatgtag
     2221 atagtcagat tgcagcaaaa aatcaacaga ttagtgagtt gacagcacaa caagctgaag
     2281 ctcaacaaca agttgatgct attcaaggac aagttgatgc aattgttagt gaacaggcga
     2341 aattaacaga agaaaatact cgtttggaag cagaatcgca gacattggcg gcagatattg
     2401 agcgtttgtc agctgatatt gtgtcacgtg atggtgcttt aaaggagcag gcgcgtagtg
     2461 ctcaagttga tggttctgct tcaagttaca ttaatacaat tttggattca aaatcaatca
     2521 ttgatgctgt ttctcgtgtt aatgcaatgc gtgagattgt ttcagctaat aaccgtatgt
     2581 tagaacaaca aaaggctgat aaggaagcaa ttgttgaaaa acaaaaggca aatcaagagg
     2641 caatcactac tttggcagct aatcgccaaa aattggaaga tgacgcccaa gtattgcaag
     2701 tgcgtcaggc tgaattggaa gctgctaagt taaatttggc tgtgcagaaa gctactgctg
     2761 aagatgagaa aaattcattg ttggtgcaaa aggcagctgc agaggaagcg gctcgtcaag
     2821 cggcagctcg tcaagcggag tatcaagcac aacaggcagc tctagcacag caacaagtag
     2881 cctcagtatc agcaccagtc gtgtcaacgc cggtagaaac tacagtgact gaaacgtttg
     2941 cagcccctac tcagacagta tcacaatcta caccaacggt aagcacacct acaacgtcta
     3001 catcatcagg ttcaggtagt tcagcggcag caaataatgc gcgttatgac gcttcatctt
     3061 acccagttgg tgagtgtact tggggagtta aatctcaact ttcatgggtt ggtccttact
     3121 ggggagatgc taaacagtgg ttagcatcag cacgtgctga aggttttagt acaggttcta
     3181 ctccacaagt aggtgcgatt gctgtttgga caggtggtta ttatgggcac gtagctgttg
     3241 ttacggctgt tcaatcttca acaagtatcc aagttgttga atcaaactac atgggtcgtc
     3301 gttatattgg taaccatcgt ggtggttatt tcaatccaac aacgacttct gagggagcag
     3361 tttactacat ttaccctcca tattaagaaa ttttcaaata gagcgtgtgg atttgcgctc
     3421 tatttttgtt tgaaaaatga aggaaaaagg gttaaaatag taaaggtaga aatatatagg
     3481 aggctgtcat ggcgtttact gacttaaaat tgttcgctct ttcgtcaaat cagaagttag
     3541 ctgaacaggt gtcgaaaaaa ataggaattc ctctgggaaa atcaagtgtt cgtcaatttt
     3601 cagatggtga gattcaggta aatattgagg aatccattcg tggaactcat gtgtatattc
     3661 ttcaatccac tagctcacca gttaatgata atttaatgga aattttgatt atggtcgatg
     3721 ctcttaaacg tgcatctgct gaatcagtaa acgtagtaat gccttattat ggttatgcac
     3781 gccaagaccg gaaggctcgt gcacgggaac caattacatc aaaattggtg gctaatatgt
     3841 tgcagacagc gggggtcaat cgtttgttga caattgattt gcatgctgcg cagattcagg
     3901 gattcttcga tattcctgtt gatcatttga tgggtgctcc attgattgcg gattattttg
     3961 agcgtcgtgg tatggtaggt gatggctatg ttgttgtatc ccctgaccat ggtggtgtga
     4021 cacgtgcccg taagttagca cagttcttga agacaccgat tgctattatt gataaacgcc
     4081 gtagtgttga taagatgaat acatcagaag tgatgaacat tattggcgat attaaggata
     4141 aaacttgtat cttgattgat gatatgattg atactgcggg taccatctgt catgcagcgg
     4201 atgctttggc agatgcaggg gcaacagctg tttatgcttc atgtacgcac ccagtattgt
     4261 cagggcctgc tatggataac attagtaagt cagcaattaa gaaattggtt gttcttgata
     4321 caattgaaat tgcagaagat cgcttaatcg ataaaatcga acatatttca acggcagaat
     4381 tattagcgga agcgattatt cgtattcatg aaaaacgtcc tttgtcacct ttgtttgagg
     4441 caagtcgtgt taaataggta tgagaagagt caaatgactc ttctttttta catttattt
//
LOCUS       DASGBY010000140         4288 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.141, whole genome shotgun sequence.
ACCESSION   DASGBY010000140 DASGBY010000000
VERSION     DASGBY010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.141"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            52..276
                     /locus_tag="U1396_001771"
     CDS             52..276
                     /locus_tag="U1396_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000284847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5342929.1"
                     /translation="MYQRIRDLREDNDFTQKFVAEKLSFSSTNYAKIERGEVVLTAEI
                     LIKLSALYNVSTDYILGLSDCPQRIKQKIK"
     gene            411..572
                     /locus_tag="U1396_001772"
     CDS             411..572
                     /locus_tag="U1396_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001838438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342930.1"
                     /translation="MTTNKDNDTSERSGCHRKRTAGEMPMHDLTNHTHGGNDRVSRYQ
                     EEKFWNKQL"
     gene            736..2490
                     /locus_tag="U1396_001773"
     CDS             736..2490
                     /locus_tag="U1396_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5342931.1"
                     /translation="MKNNNVEIIKADSLVRRRGDNFERDSKRVAAYCRVSSDSEDQKN
                     SYESQVRHYKDYISQRSDWELAGIYADEGISGTQVGKRQDFQRLINDCVNGEIDYIVT
                     KAIARFARNTLDTLKYVRMLKDMQIGVYFEEENIDTLTMDGELLLTILSSVAQQEVEN
                     TSAHVKKGLKMKMQRGELVGFQGCLGYDYDVETKQLSINKKEAKIVRYIFERYLEGIG
                     GKVIARELDELGYKSPRGLEHWNDTTVLGIIKNEKYKGDILMGKTFTVDPISKRRLSN
                     FGEEDKYYIKDNHEPIISKEDFEKAQEIRLRRAGNKKTAANVNGKRERYSKMYAFSSM
                     LECGFCGSILSRRSWHCRSDYRKVVWHCVTSIKKGKKFCKHSKGLEELAIEGAFMEAY
                     RQLYHSNENLMTDLLETIESELNDNSLNKELKRITNKLRTLLKKEENLVNLRLEGKIS
                     DTIYNEKYNEISSEKVFLAEEKVNIETTLKSEIDVKKRLTEFKHLLSSQKMLTEFDRA
                     VFESIVEKIIVGGVNSDGEIDPAMLTIIFKTGETENKDGKQFKSKRKNAKLETDKLCP
                     QNSDGDKKLYSQEPDNTC"
     gene            complement(2596..2857)
                     /locus_tag="U1396_001774"
                     /pseudo
     CDS             complement(2596..2857)
                     /locus_tag="U1396_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558050.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
     gene            3083..4195
                     /gene="glf"
                     /locus_tag="U1396_001775"
     CDS             3083..4195
                     /gene="glf"
                     /locus_tag="U1396_001775"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEM5342932.1"
                     /translation="MKKYDYLVVGAGLFGAVFAHEAAKKGKKIKVIEKRDHIAGNIYT
                     REVEGIQVHEYGAHIFHTSEKEIWDYVNQFAEFNRYTNTPVANYKGEIYNLPFNMNTF
                     NKLWGVVTPAEAEAKIAEQRAVLGGKTPENLEEQAISLVGTDIYEKLIKSYTEKQWEK
                     PCTELPAFIIRRLPVRLTYDNNYFNDTYQGIPIGGYTQIVEKMLEHENIDVETNVDFF
                     ANKEEYLANYPKVVFTGMIDEFFDYQLGELEYRSLRFETEVLDMENYQGNAVVNYTDS
                     ETPFTRIIEHKHFEFGTQPKTIITREYSKTWKRGDEPYYPVNNDRNNKLYTAYKRLAE
                     QQENVIFGGRLGHYRYYDMHQVIGGALQCVRNEVGE"
BASE COUNT         1543 a          654 c          898 g         1193 t
ORIGIN      
        1 ttccaagttt tcttctaaaa gtattctata cttttcatag gagaaagcta tatgtaccaa
       61 cgtataaggg acttgagaga agacaatgac ttcactcaga aatttgtagc tgaaaaacta
      121 tcgttctctt ccacaaatta tgcaaagatt gagagaggtg aggtagttct tacagctgaa
      181 atacttataa aactctctgc actatataac gttagtacgg attatattct tggactatca
      241 gactgtcctc aaagaattaa acaaaaaata aaatagtctc tccttgattt gttcattgac
      301 aattgaataa accgaggtgg gactttctta tttgtcgagc aatttagtga gatacgccgt
      361 gataggagcg aaaattatta gctataaaat agagtggttc tctatctgcc atgaccacaa
      421 ataaggacaa tgatacttct gaacgttcag gctgccatcg taaaaggaca gcgggtgaga
      481 tgcccatgca cgatttaacc aatcataccc acggaggaaa tgatagagta tcacgttatc
      541 aggaggaaaa attttggaac aaacagttgt aaaatatagt ctgcagttat caatgcttaa
      601 ttttttatac tctaaagaat tgttatctaa aaatgaatat gaaaaaatca gaaacagact
      661 gcgtattaag tacacaaaat agctgacctt ttgatttgaa cgcggtaata tagaatcaaa
      721 aggaggaatt tcagtatgaa aaacaataat gttgaaataa taaaagctga ttcgttagtt
      781 cgtcgaagag gcgataattt cgaaagagac tcaaaaaggg ttgctgctta ttgccgagtt
      841 agttctgata gtgaagatca gaagaacagc tatgaatctc aggtgagaca ttataaagat
      901 tatatctctc agcggtcgga ttgggaactg gcaggtatct atgcagatga agggatttca
      961 ggaacacaag taggaaagag acaagatttt caacgattaa taaatgattg tgtaaatgga
     1021 gaaatagatt acattgtcac aaaagcaatt gctagatttg ccaggaatac cctagatact
     1081 ttaaaatatg tcagaatgtt aaaagatatg caaattggag tatattttga ggaagaaaac
     1141 atagataccc taacaatgga tggagaattg cttttgacta ttctaagctc cgttgcacag
     1201 caagaagtag aaaatacatc tgcacatgtg aaaaaaggat taaaaatgaa gatgcaacgt
     1261 ggtgaattgg ttggctttca agggtgccta gggtatgatt atgatgtaga aaccaagcag
     1321 ctttcaatta ataaaaaaga agccaaaatt gttcgttata tttttgaaag atatctagaa
     1381 ggtattggag gaaaagtaat agctagggaa cttgatgaac ttggttacaa atcgccaaga
     1441 ggattagaac attggaatga tacaacagtt ctaggaataa taaagaatga aaaatataaa
     1501 ggtgatattc taatgggaaa aacttttaca gttgacccaa taagcaagag aaggttgagt
     1561 aattttggag aagaagataa gtactatatt aaagataatc atgaacctat aatatctaaa
     1621 gaagattttg aaaaagctca ggagattaga ctgcgtcgag caggaaataa gaagactgct
     1681 gcaaatgtaa atggcaagcg tgaacgctat tcaaaaatgt atgcttttag tagcatgtta
     1741 gaatgtggtt tttgtggttc aatattatct agaaggagtt ggcactgccg ttcagattat
     1801 cgcaaggttg tgtggcattg tgttacatcg ataaagaaag gaaagaaatt ttgtaagcat
     1861 agtaaaggat tagaagagct cgctattgag ggggctttca tggaagcgta cagacaactt
     1921 tatcattcaa atgaaaactt aatgacagac ttacttgaaa cgattgaatc tgaattgaat
     1981 gacaatagcc ttaacaagga attaaaaagg attacaaaca aacttcgaac attactaaaa
     2041 aaagaggaaa atcttgtaaa tctaaggctc gaagggaaaa ttagcgatac catatacaat
     2101 gaaaagtaca atgaaatttc ctcagaaaaa gtgtttctag cagaagagaa ggtaaatatt
     2161 gaaacaacct taaaatcaga aatcgatgta aagaaaagac taactgagtt taagcacttg
     2221 ctatcttcac agaaaatgct tacggagttt gatcgtgcag tttttgaaag tattgttgag
     2281 aaaattattg taggtggagt taatagcgac ggagaaattg atcctgcaat gttaaccata
     2341 atattcaaaa caggtgaaac tgaaaacaag gatggtaaac aatttaaaag taaacgtaaa
     2401 aatgctaaac tagaaacaga taaattgtgt cctcaaaaca gtgacgggga taaaaaattg
     2461 tattctcaag aaccagacaa cacatgttga agttgtgagt ctgttagaaa aacgcaatta
     2521 gattgtccag cttactctct tgttttctgg caagctgctt caaaggtccg caggaccttt
     2581 gaactctcaa atacgcatca tgttgacagt tgccacacct acaccaaaat caaatgccaa
     2641 caagcattga gtcgggtaat agcgtaagta gcgcaaggtc atgatgagct gctcttccat
     2701 acttagacgg cgtggatgtc ctccttttcg gtgttgctct tgataagcgt cagtgagaca
     2761 atcaagcatc agttgaaacg tcgctttttt taacaactat caacaatttg aaattctctg
     2821 agtttaattt taagactttt tcgtatgttg tttccatacc tttagtatac cgcctttgag
     2881 ttaccgaaca agtctattga taaacttgat gaaggttgta ttgtctgtta taatattgga
     2941 tattgtaagc tttaagtgaa aggttttagg gaagagatta tcacaactca ttctttatta
     3001 gttatgagac gatggtataa atgatagtct agtaaaagat ttggagaaat gacttcccta
     3061 gaaggttaaa tgtaaaaaca atatgaaaaa atacgattat ctagttgttg gtgctggtct
     3121 gttcggtgca gtctttgctc atgaggcagc taaaaagggt aaaaaaataa aggttatcga
     3181 aaaacgagac cacattgcag gtaacatcta tacaagagaa gtagaaggta ttcaagtcca
     3241 tgaatatggc gcacatattt tccatacttc tgaaaaagaa atttgggatt atgtgaatca
     3301 gtttgcggag ttcaaccgat atactaacac accagttgcc aactacaagg gtgagattta
     3361 caatcttcca ttcaacatga atactttcaa taaactgtgg ggtgtggtga cccctgctga
     3421 agcagaagcg aagattgcag agcaacgagc tgtattggga ggaaaaacac ctgagaactt
     3481 ggaagagcaa gccatctcac ttgttggtac agatatctat gaaaaattga tcaagtcata
     3541 caccgagaaa caatgggaaa aaccatgtac ggagttacca gccttcatca tccgtcggtt
     3601 gccagtgcgt ttgacttatg ataataacta ctttaacgat acttatcaag gtattccaat
     3661 cggtggctac acgcagattg tagaaaaaat gttggaacat gaaaatatcg atgtggagac
     3721 aaatgttgat ttctttgcca ataaggaaga atacttggcg aactatccaa aagttgtctt
     3781 tacaggaatg attgacgagt tctttgatta ccaacttggt gaattggagt accgtagcct
     3841 tcgatttgag acagaagtat tggatatgga aaactaccaa gggaatgcgg ttgtcaacta
     3901 cacagatagc gagacaccgt ttactcgaat catagaacac aaacatttcg aatttggtac
     3961 acaaccgaaa accattatta cccgtgagta ttcgaagacc tggaaacgag gcgatgagcc
     4021 atactatcca gtcaataatg accgcaacaa caaactctat actgcttata aacgcctcgc
     4081 agaacaacaa gagaatgtta tttttggtgg acgtcttggt cattatcgtt actacgatat
     4141 gcaccaggtt atcggtgggg ccttacagtg tgtgagaaat gaagttgggg aatgattttg
     4201 agaagtcatc aaagtagtaa tcgattcttg gcagaagttg gaatgctctc aaaatgttaa
     4261 tcaaaaaaaa ccagaaagtc tggttttt
//
LOCUS       DASGBY010000141         4285 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.142, whole genome shotgun sequence.
ACCESSION   DASGBY010000141 DASGBY010000000
VERSION     DASGBY010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.142"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(240..1778)
                     /locus_tag="U1396_001776"
     CDS             complement(240..1778)
                     /locus_tag="U1396_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="HEM5342933.1"
                     /translation="MVELSISFKTSTKMTSIKHNNRDLTEEEYLEVQYQHIDQSKSGD
                     NIYIKQENLKEVYQTLFGKSLAEYNAKQKRKDRMISDYYQHVKKSKTLDLQREFIVGI
                     GNKQDWDRLKPGGKKIVGKLLAAYIEEFQNRHPHLYIYNAAVHLDEKGHPHAHFNIVP
                     LATGYKNGLSIQPSFKKALQNEGYREQGRHQLKAFKDGEIKVLEGMLKQLGVERKLVG
                     TNDIKDMHEYKAMIQEVNREKERLLSQIDVERSQKLLESRKLQERLNTLQNKQNVLEG
                     KIKALDNEILTKEEYSHKLEMEALSLEEVRLPRLRAENKTLEERIQRFTTEVGEMEKR
                     VRESHERVLKQLEEDFDVITQEMTAQLPEVGQSDQEIAFIKELGYEGVDDLVLRNQTM
                     SAIVKHYRQVWQDIKGIFQDLNMVNAFKKAKEVWNKITTFQEPRLDAGVRERLARVKT
                     QVLGRPATFRRRLDDAISDAKQEIEKLSFEERLKRAKAQSEALSQKARGVRKEKDMES
                     DLSL"
     gene            complement(2051..2368)
                     /locus_tag="U1396_001777"
     CDS             complement(2051..2368)
                     /locus_tag="U1396_001777"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342934.1"
                     /translation="MIVEKSYNITLEKLYEQNKLLTSAIFEIHGDNVKSASLFCIDYD
                     ISLRDRDKIILLLNKFSDSHNVKEILFWKKILCSEIPFLATLDDEKFFEMINMFWEEY
                     VSY"
     gene            complement(2368..2826)
                     /locus_tag="U1396_001778"
     CDS             complement(2368..2826)
                     /locus_tag="U1396_001778"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342935.1"
                     /translation="MKFSKCIIVGLLTVSMCGVVAPSVSGVIVSADEVHNGNTYLPPV
                     KESDYLGQKTERSIWSKIAKSAIKKAIRNKHLLMEFIEEVAGKTVARNANKFFSPIAA
                     SLEPLLEWAEIPGNAVYDAVFRAVIKAGGSRAVAANIANAIREVLEWTLF"
     gene            complement(3305..4102)
                     /locus_tag="U1396_001779"
     CDS             complement(3305..4102)
                     /locus_tag="U1396_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HEM5342936.1"
                     /translation="MKSSKFDKTFDNLLSRQEYVVSQGNDLAKAFGNLKAFEHRLLDY
                     CFSYVKASDEVSQVYIAQSKEILKHFGLTFSGTNYERIVRAFKTLHDNTALYFTEITD
                     DGRKSFVMSQLFSRIKFIDNGEVEFRFSEDAAPYIFALRGQFYRFTLAELSRIKSKYG
                     LILLKLWESKRFGKTERTIVYGSVEEWQEWFLGSARRMSPAIFKRNCLVKGIEELEKK
                     LGIEVYLETIMNGRKVEGYEMTLIDRRQSGSSDMGELQMNIYDFLEN"
BASE COUNT         1238 a          925 c          639 g         1483 t
ORIGIN      
        1 aaaaaaaaag gctcaaccat gctgtttata gctctcccta aataataata aataatataa
       61 taaataattt aataaaataa cttgttagaa aaaaagaaaa gaaaaacttt aaatttttaa
      121 aaagagaaat gttttttttg tcacgtaata cgaagcaact cgctccgctc gtaacaaaaa
      181 gacctttcaa ggtctttttg ttacagctta ctgacaagag ttttctcggt atacataact
      241 tagaggctta aatctgattc catatccttt tcttttctaa cgccccgagc tttttgactt
      301 aatgcttcac tttgagcttt agcacgtttc aaacgttcct caaagcttag cttttcaatc
      361 tcttgtttag catcagaaat agcatcatct aaccgacgtc tgaatgtggc aggacgaccc
      421 aaaacctgtg ttttaaccct ggctaatcgt tctctcactc cagcgtccag acgtggctct
      481 tggaaagtgg taattttatt ccaaacttct ttggctttct taaaggcatt taccatattt
      541 aggtcttgaa aaatcccctt gatgtcctgc cacacttgac gatagtgttt gactattgcg
      601 gacattgttt gattacgcag aacaaggtca tctactccct cgtagcctaa ttctttgata
      661 aaagctattt cttgatcgct ttgaccaact tcaggaagtt gagcagtcat ttcctgggta
      721 ataacatcaa aatcttcctc gagctgtttt aagaccctct catggctttc tcgaactctc
      781 ttttccattt cccctacctc ggtcgtaaaa cgctgtatac gctcttctag ggtcttattt
      841 tcggctcgta agcgaggtag gcgaacttct tccagactaa gagcttccat ctccagttta
      901 tgactatatt cctccttagt caatatttcg ttatctaaag cctttatttt gccctctaag
      961 acattttgtt tgttttggag ggtatttaat cgttcctgaa gttttcgact ctctaagagc
     1021 ttctgagagc gttctacatc aatttgagat aatagacgtt ctttctctcg gttgacctct
     1081 tgaatcatag ccttgtattc gtgcatatcc ttgatgtcat ttgtgcctac tagtttgcgt
     1141 tctacaccta attgtttaag cattccctcc aggactttaa tctctccgtc cttgaatgct
     1201 tttaattggt gtcgtccctg ctccctgtac ccctcgtttt gcaaggcttt cttaaagctg
     1261 ggttgtattg atagtccgtt cttgtagcca gttgccagag gaacgatatt gaagtgggca
     1321 tgaggatgtc ctttctcgtc caagtgaaca gcagcgttat agatatacaa gtgagggtgc
     1381 ctattctgaa actcctcgat gtaggcagcc aaaagtttcc ccacaatctt cttccctcct
     1441 ggtttcaatc tatcccaatc ttgtttattt ccaatgccta caatgaactc acgttgcaag
     1501 tccagggtct tagatttttt gacgtgctga tagtaatcac taatcattcg gtcttttcgt
     1561 ttttgtttgg cattgtattc tgctaaggat ttaccaaaca aggtctgata aacctctttt
     1621 agattttcct gtttgatata aatattgtct ccagatttgc tttgatcaat atgctggtat
     1681 tgaacttcca aatactcctc ttctgtcaaa tctcggttat tgtgtttgat acttgtcatc
     1741 ttggtactcg tcttaaacga tatacttaac tcaaccattt ttcctcccag ggccagctcc
     1801 cgcattcggg agctgggcaa gtcgactacg tctattactt gcccgaaatt ctgtccgacg
     1861 ttgtccgact tttgatacag ttgctgtcta gaaattatac caaatttttg ttactttttc
     1921 caaaaaagta acgtttatgc tgttttgaca cttcgtatca aaacgaaaac gctctcccga
     1981 gggactcttg cagagagcaa tttatacgaa tcagtgtata aaaaagcacc ctattattta
     2041 gagtgctgac ttaataacta acatattctt cccaaaacat attaatcatt tcaaaaaact
     2101 tttcatcatc tagagtagct aagaaaggaa tttctgaaca taatattttt ttccaaaata
     2161 atatttcttt gacattatga ctatccgaaa acttgttcag caataatata attttatccc
     2221 tatctctcag acttatatca tagtcaatac aaaaaagact tgctgattta acattatctc
     2281 catgtatctc aaagatagct gacgttaaca atttgttttg ttcatacaat ttttctaatg
     2341 tgatattata acttttttct acaatcatta gaaaagtgtc cactctaaaa cttctcgtat
     2401 agcatttgct atattagcag ctactgctct acttcctcca gctttaataa ctgctctaaa
     2461 aacagcatca taaacagcat tccctggaat ttcagcccac tccaataaag gttctaacga
     2521 agctgcaata ggagaaaaaa acttatttgc atttctagca acagttttac ccgccacttc
     2581 ctctataaat tccataagca aatgtttatt acgaatggct ttctttatag ctgacttagc
     2641 aattttactc caaatactac gttctgtttt ctgacctaga taatcactct ctttaacagg
     2701 tggtaaatat gtattcccat tatgaacttc atctgctgaa actattacac ctgaaacact
     2761 aggggcaaca acgccacaca tcgaaactgt tagcaaacca acaatgatac attttgaaaa
     2821 tttcataaaa atactctctc ttaaaaaata ttattaaaca ataagaaatt caatttatat
     2881 aaatgaaccc cttatttaca atataccact cttaaaatcc tcttgcaact actaactaaa
     2941 caatactttc agttaggcgg ttttaatttt ggaagttgtg atataatcaa taggtcgcaa
     3001 caccaagtta gcgctagcta aggaggtgag acttttatgc tacacacatt tcttgagctt
     3061 gttttgctac cgttgcttgt cagcgtagtt gcagaactta ttacggagtg gctagtccgt
     3121 aagtggcgaa acaaatgcga caaataatct agcctgcgtg ccttgagcaa gcacaaaaaa
     3181 acacccttgg ctgcaaccgt gggtgttttc tttatgctta catctcttga acttttaagc
     3241 acctttagtg taacacacaa ggctcatttt gtcacgtaac acgaagcaac tcgctccgct
     3301 atcattagtt ctctaaaaaa tcatatatgt tcatttggag ttcgcccata tctgatgaac
     3361 cactttgacg tcgatcgata agggtcatct catatccctc cacttttctc ccattcataa
     3421 ttgtttctaa atatacctct attcctaatt ttttctctaa ttcctctatc cctttgacta
     3481 agcagtttct cttgaagata gctggagaca tacgtctagc ggatccaaga aaccattcct
     3541 gccattcttc aacacttcca taaacaattg ttcgttcagt ctttccgaag cgtttagatt
     3601 cccataactt taacaatatt aatccgtatt tagatttaat cctagaaagt tctgccaagg
     3661 taaatctata aaattgacct cgaagagcaa aaatataggg tgcggcatct tcagaaaaac
     3721 ggaactccac ttccccatta tcaataaatt taattctact gaatagttgt gacatcacaa
     3781 aagatttgcg gccatcatct gttatttctg taaaatacaa tgcagtatta tcgtgcaatg
     3841 ttttaaaagc tcttacaatt cgttcatagt ttgtacccga aaaagtcaag ccaaaatgct
     3901 tcaatatttc tttagattga gcaatataaa cttgagaaac ttcatcacta gccttcacat
     3961 aagaaaaaca ataatccaac aatctatgtt caaatgcttt caagttacca aatgcctttg
     4021 ctaaatcatt accttgagaa actacatatt cctgcctact caataaatta tcgaatgttt
     4081 tgtcaaattt actacttttc atcacgatat ccttacaatt tttacacatc tttattattc
     4141 tactttatac atttgtgcat catttgtcaa atatttattt tttctgtcat gtgtcacgca
     4201 cttttttgtc atatgtcacg cacttttttg tcatgtgtca cgcacttttt tgtcatgtgt
     4261 cacgcacttt tttgtcatgt gtcgt
//
LOCUS       DASGBY010000142         4214 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.143, whole genome shotgun sequence.
ACCESSION   DASGBY010000142 DASGBY010000000
VERSION     DASGBY010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4214
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.143"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(190..1812)
                     /locus_tag="U1396_001780"
     CDS             complement(190..1812)
                     /locus_tag="U1396_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5342937.1"
                     /translation="MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFL
                     KILAGDIEPSTGHISLGPDERLSVLRQNHFDYEDERVIDVVIMGNEQLYSIMKEKDAI
                     YMKEDFSDEDGVRAAELEGEFAELGGWEAESEASQLLQNLNISEDLHYQNMSELTNGE
                     KVKVLLAKALFGKPDVLLLDEPTNGLDIQSINWLEDFLIDFENTVIVVSHDRHFLNKV
                     CTHMADLDFGKIKIFVGNYDFWKQSSELAAKLQADRNAKAEEKIKELQEFVARFSANA
                     SKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKSEREIGNDLLTVENLKVVIDGETI
                     LDNISFILRPGDKTALIGQNDIQTTALIRALMGDIEYEGTIKWGVTTSQSYLPKDNTR
                     DFDTNESILDWLRQFASKEEDDNTFLRGFLGRMLFSGDEVNKPVNVLSGGEKVRVMLS
                     KLMLLKSNVLVLDDPTNHLDLESISSLNDGLKAFKESIIFASHDHEFIQTLANHIIVI
                     SKNGVIDRIDETYDEFLENAEVQAKVQELWKA"
     gene            complement(1877..2749)
                     /locus_tag="U1396_001781"
     CDS             complement(1877..2749)
                     /locus_tag="U1396_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5342938.1"
                     /translation="MKERIKDFISVTLGSIVMAIGFNSFFLENNIVSGGVGGLAIALN
                     ALLGWSPSDFVLYCNIPLLIICWFFLGKSVFIKTVYGAIIYPLCIKLTAGLPNLTENP
                     LLAAIFGGIILGFGLGLVFLGNSSTGGTGILIQFIHKYTPLSLGLTMAIIDGIIVGLG
                     FVAFDTDTVMYSIIALMTITYIVNRMMSGTQSSRNVMIISQKSEEIKDYITKVADRGV
                     TELPIIGGFTGVDKRMLMTTISIPEMQKLETAVLEIDETAFMVVMPASQVRGRGFSLQ
                     KDHKHYDEDILIPM"
     misc_binding    2851..3057
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3104..4129
                     /gene="trpS"
                     /locus_tag="U1396_001782"
     CDS             3104..4129
                     /gene="trpS"
                     /locus_tag="U1396_001782"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEM5342939.1"
                     /translation="MSKPIILTGDRPTGKLHIGHYVGSLKNRVLLQDAGQHELFVFLA
                     DQQALTDHAKEPQKIVESVGNVALDYLAAGLDPAKTTIFIQSQIPELAELTMYYMNLV
                     SVARLERNPTVKTEIAQKGFGEGIPAGFLVYPVSQAADITAFKANFVPVGNDQKPMIE
                     QTREIVRSFNHAYQTDILVEPEGIYPENEAAGRLPGLDGNAKMSKSLGNGIYLADDMD
                     TLKKKVMSMYTDPNHIRVEDPGKIEGNMVFHYLDVFGREEDKAEIEAMKEHYQRGGLG
                     DVKTKRYLLDILERELGPIRERRIEFAQDMGQVYAMLEAGSQKARQVAATTLDQVKSA
                     MGINYFK"
BASE COUNT         1271 a          815 c          908 g         1220 t
ORIGIN      
        1 acccccgcac agctcaaact gtctgggaga cagtttgagg ttggagataa ggcgaacttt
       61 gttcgcaaca gtcgtaatgg ccagatttgg agtgtgaaac acgaacaaat ctggcaatca
      121 accactgcgc tgagatgttg acacgaactc tgagaagaga ggctgggcaa aagtcccagc
      181 ctctttttat tatgctttcc aaagttcttg tacttttgct tgtacttcag cattttccaa
      241 gaattcatca taagtttcgt cgattcggtc gataacaccg tttttagaaa tgacgatgat
      301 atggtttgct aaagtttgaa taaattcgtg gtcgtggctg gcaaagatga tggactcttt
      361 aaaagctttc aaaccatcat tcagactgga aattgattcc aagtccaagt ggttggttgg
      421 atcatctaag accaagacat ttgacttgag gagcatgagt tttgacaaca tcacgcgcac
      481 tttttcgccc cctgacaaga cgtttacagg tttgttaacc tcatcacccg agaagagcat
      541 acgtcccaag aaaccgcgca agaaggtatt gtcatcttct tccttgctgg caaattgacg
      601 gagccaatca aggatagatt cgtttgtatc aaagtcacga gtattgtctt ttggtaagta
      661 ggattgacta gtagtgacac cccacttgat agtaccttca tattcaatat cgcccataag
      721 agcacgaatg agagcagttg tttggatgtc gttttgacca ataagagcag tcttgtcacc
      781 tggacgcagg ataaagctga tattgtcaag aatcgtttca ccatcgatga caactttcaa
      841 gttttcaact gttaggaggt cattaccaat ttcacgttct gatttgaagt tgataaatgg
      901 atacttacgg ctagaaggaa taatttcctc caactcgatt ttgtccagca tctttttccg
      961 tgaagtagct tgcttagact tagaggcatt agcagagaaa cgggcaacga attcttgtag
     1021 ttctttgatt ttttcttctg ctttggcatt acggtcagct tgtagtttag ctgctagttc
     1081 actggattgt ttccagaagt catagttacc aacgaaaatc ttgattttac cgaagtcaag
     1141 gtcggccata tgggtacata ctttgtttaa gaagtggcgg tcgtgtgaca cgacgataac
     1201 cgtattttca aagtcaatca agaaatcttc gagccagttg atagattgga tgtccagacc
     1261 gttggttggc tcgtccaaaa gaagaacatc aggcttacca aagagggcct tggccaagag
     1321 gaccttgacc ttctcaccgt tggtcaattc gctcatgttt tggtagtgga ggtcttctga
     1381 aatgttgagg ttttggagca attgagaagc ttcactttca gcttcccagc caccaagttc
     1441 agcaaactca ccttctaatt cagcagcacg aacaccatct tcatcagaaa aatcttcctt
     1501 catgtaaata gcatcttttt ctttcatgat gctgtaaagt tgctcatttc ccatgataac
     1561 aacgtcaatc acgcgctcat cttcatagtc gaaatggttc tgacgtagta cagaaaggcg
     1621 ttcgtctggt ccaagtgaaa tatgacctgt tgatggctcg atgtcaccag caagaatttt
     1681 caaaaatgta gatttgccag caccattggc accaatcaaa ccgtaggtat ttcctgctgt
     1741 aaatttgata ttgacatcgt caaataattt gcggtcgcta aagcgaagcg acacgtctga
     1801 tactgtaagc atagtttctc ctctatttct gtctattagt tttattgtac tagaaagaac
     1861 ttgaattttc aatgaattac attggaatca aaatatcttc atcataatgt ttatggtctt
     1921 tttgaagact gaagccacgt ccacgcacct gactcgcagg cataacaacc ataaaggcag
     1981 tttcatcaat ttctaatacc gctgtctcca gtttctgcat ttctggaata gagatggtag
     2041 tcatcaacat gcgcttgtca acccctgtaa agccaccaat aattggaagt tctgtcacac
     2101 cgcgatcagc aactttagta atatagtctt taatttcttc tgatttttga gaaataatca
     2161 tgacatttcg agaagattgg gtaccagaca tcatgcggtt gacaatataa gtaatggtca
     2221 ttagggcaat aatagagtac ataacagtat cagtatcgaa ggcaacaaat ccaagaccaa
     2281 cgataatacc atcaataata gccattgtca gacctaatga taaaggggtg tacttgtgaa
     2341 taaattgaat aagaatacct gttccaccag tagaagaatt tccaaggaag acaagcccaa
     2401 gtccaaaacc taggataatt ccaccgaaaa tagcagctag gagaggattt tctgtcaagt
     2461 tgggtaaacc tgctgtcaac ttgatgcaaa gagggtagat aatagctcca tagacagttt
     2521 tgataaatac agattttcct aagaaaaacc aacagatgat taataaaggg atgttacagt
     2581 agaggacaaa atcagacgga ctccacccca gaagagcatt gagtgcgatt gctaaacctc
     2641 cgacaccacc agatacgata ttattctcta gaaaaaaact gttaaatcca atggccatga
     2701 caattgatcc gagtgtgaca gagataaagt cctttatacg ttctttcata tattctcctt
     2761 ggttagtgtt ataaaagcaa tttctattat ccctaattta gacagtatcg tcaaggcttt
     2821 gtcagcttga ctttctaatt ttttgcggtt ataataggaa tcaatcagaa gagtagtaag
     2881 tggataattt ttagagagtt tgtggttggt gtgaacaaac aagagtcgct tatgaatgga
     2941 ctgagtgaat agaatctgaa taaataagga ttcggctagc aggccttatg tgcaaaaaga
     3001 tgtaagctta tttaatgctt ataagtgagg tggcaccgtg tccttgacgc cctcgcacag
     3061 ttttctgtgc gtgggctttt attatgtaaa aggagaacat tttatgagta aaccgattat
     3121 cctaacagga gaccgtccaa caggcaaatt acatattgga cattatgttg gttcgttgaa
     3181 aaatcgtgtt ttattacagg atgcaggtca acatgaactt tttgtctttt tagcagacca
     3241 acaagcgttg acagatcatg caaaggaacc gcaaaagatt gttgaatccg ttggaaacgt
     3301 agcactagat tatctagcgg caggacttga tccagctaag acaacgattt tcatccagag
     3361 tcaaattcct gaattggcag agttgaccat gtactacatg aacttggtat ctgttgcacg
     3421 tctagaacgc aatccgactg taaaaaccga gattgctcag aagggatttg gcgaaggaat
     3481 tccagctggt ttcttggtct atcctgtgtc acaagcggcg gatattacag ccttcaaggc
     3541 aaactttgtt ccagtaggaa atgaccagaa acctatgatt gagcagactc gtgaaatcgt
     3601 tcgtagcttt aaccatgctt accagactga tattttggta gagccggagg gcatttatcc
     3661 tgaaaatgag gcagctggtc gcttgccagg tttggacggc aatgccaaga tgtctaagtc
     3721 acttggaaat ggtatttatc tggcagatga catggataca ctcaagaaga aagtcatgtc
     3781 catgtacact gatcccaacc acatccgtgt tgaagaccca ggtaagattg aaggaaacat
     3841 ggttttccac tatcttgacg tttttggtcg cgaagaagat aaggctgaga ttgaggctat
     3901 gaaggagcac tatcaacgtg gtggtttggg cgatgtgaag accaaacgtt atttgctgga
     3961 cattttagag agagaattag gaccaatccg tgagcgtcgt atcgaatttg cacaggatat
     4021 gggacaggtc tatgcaatgt tggaggcagg tagccaaaaa gctcgccaag ttgctgcgac
     4081 aactcttgac caagtgaaat ctgctatggg aattaactat tttaaataag gttaacaatg
     4141 aaagagcaat gttgagaaaa tgttgctttt ttcatttatt ttacgacgta gcaaaaaaca
     4201 aacgttcgaa tttt
//
LOCUS       DASGBY010000143         4187 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.144, whole genome shotgun sequence.
ACCESSION   DASGBY010000143 DASGBY010000000
VERSION     DASGBY010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.144"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..904
                     /locus_tag="U1396_001783"
     CDS             <1..904
                     /locus_tag="U1396_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003089874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5342940.1"
                     /translation="HEEMSKQLDSMLGKELTDYELLYIDDGSNDMTLELIETIAAQNT
                     KVRYISLSRNFGREGGILAGFKYATGDAVMVMDGDLQHPPYLIPQFVEAYNDGYDIVS
                     GQRDRVGESKFVSFFAKMFYEISKHSMEVELTDGKSELRLLSKRAVETFVALPEYNRF
                     NKGLYEWIGFKEKVITYSNQVRVAGISKFGFKKSFNYAVQGMISFNDKPLRICIQLGL
                     LSLGLALLYLIMEFIRYFTHPEHIVSGYFTTIAAIILFGGVQLVSIGILGEYIGKIYY
                     EVKKRPHFIVEKTNIEQAEKDRVG"
     gene            919..3813
                     /locus_tag="U1396_001784"
     CDS             919..3813
                     /locus_tag="U1396_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM5342941.1"
                     /translation="MKLYQRLLNYIEANRKMSIYIVSSTLPMLIMLVVWLCIGIYPFG
                     SKSLMAVDFGQQYISFYGFLKSTILSGDWSGFLYSFTKSLGGDMLGVLAYYLLSPFNL
                     IYVITPLSHFSLAVFLTIWLRYGAIGMSFAYLLIKRYRGLDATAWLVPLMSTAYALSG
                     MLVSYQMNPIFYDAMIMLPLVIVALEELLDGGKPFRYIWTLALTIFTQFYMGYMISLF
                     VAMYACFYVSPRLSIVGDWRQKLRNFFSPLLKAFIYSVIGVGLVAVLLYPVVLNLMQS
                     KGQVGSGMEFSFALQINPFDILSKLTIGGFDTSSGWSAGPNLPNIYIGALALFGFILY
                     FRFAETHRNQKIGACIILVIFFVSFINEFVSKIWHMGQNPAGFFFRFSWILSFYMILL
                     AFQTFKSKPKISYRSFIIGLSILIAAAVYVLSQSYSYISKVQPMIVTSFVRQYLLLIL
                     CFVVLLIAGILFFCWKKWQWSQKKVIGFTAILTIVGMTSIILLQQGYFLTQVVLTVIV
                     WIVILLSFVLQQNRLTWTTLIIVTIFELGYNAYLSQSTFFYADAYKFRDATISVKRVT
                     DSIRDNTETKFYRIGSSFSYSKTAPTLLSYPGLSSFSSSLERSTMDLFSYLGDVGVNA
                     ATQYANGTALTDALYGVRYYMDIKEYTQEEVENNPQKMYFTRHSKRFDLAEYYTNAVY
                     EDGRYIVYENPNVFSIAFGTNTLVQNIKFGFNNPVANQNIILNSMAGDTKDQVGYFQT
                     FGFSGFETQNMEETTNDKGEIIYNRIDKNQPGIIRYKIIPKSSYTYYFLTPYLLNQAE
                     GKLSILLNNKWLTNQKSFSQRQLWQLTSNTEGQETVLELRYSMDNVSLNGAGLVRADN
                     DAIKRVLAERLEQNMTVTEWSNTCVKGVVNITDDSSIMMTTIPYSKGWTVKVDGKAVM
                     TKKAWNSLLSFPISAGKHTIEISFFPQGLFIGAMLSLVFLGVVIGLYYKD"
     gene            3847..>4187
                     /locus_tag="U1396_001785"
     CDS             3847..>4187
                     /locus_tag="U1396_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM5342942.1"
                     /translation="MGKSYLLMRRFFKSEVFKYLFFGVLTTVVYIVFREFLFILMHNV
                     TASVLVANVIAIVFAFFVNDYFVFEQRRSGWVGRFVKFFLARLTTLGLDMLLAFLLIE
                     QFPEIIGQFVQ"
BASE COUNT         1229 a          585 c          874 g         1499 t
ORIGIN      
        1 acatgaagaa atgtctaagc agctggatag tatgttagga aaagagttga cagattatga
       61 gttgctttat attgatgatg gctctaatga tatgacactt gagttgattg aaacaattgc
      121 tgcccaaaac actaaggttc gttatattag tttaagtaga aattttggcc gtgagggagg
      181 tattttagcg ggttttaaat atgcaacagg agatgcagtt atggtaatgg atggagatct
      241 ccaacatcct ccttatctta ttcctcagtt tgttgaggca tataatgatg gatatgatat
      301 tgtgagtggc cagcgagatc gagttggtga atcaaaattt gtaagttttt ttgcaaaaat
      361 gttttacgaa atatcaaaac attccatgga agtagaattg acggatggaa aatcagaatt
      421 acgtttgtta agtaagcgtg ctgttgaaac ttttgtagca ttgcctgagt ataaccgatt
      481 taataaagga ctatacgaat ggataggttt taaagaaaaa gtaattacat atagtaacca
      541 agttagggtg gccggaatca gtaagtttgg ctttaaaaaa tcctttaatt atgcagttca
      601 aggcatgatt tcgtttaatg ataagccact gaggatttgc atacagttag gtttactcag
      661 tttaggactt gctttacttt atcttataat ggaatttatt cggtatttta cacatccgga
      721 acatatagtt agtgggtatt ttacaaccat tgcagctatt attctttttg gaggtgttca
      781 gctagtttct attggtattt tgggagaata cattggtaaa atatattacg aagtcaaaaa
      841 gcgtccacac tttatagttg agaaaacaaa tattgaacag gcagagaaag atagggtagg
      901 ataaaaatga ggatatttat gaaattatat caaaggttgc tcaattatat tgaagcgaat
      961 cgaaagatga gtatctatat tgtcagtagt acactgccta tgcttattat gctggttgtg
     1021 tggctatgca taggtatata tccttttgga agcaaaagtc ttatggcggt tgattttggg
     1081 caacagtata ttagttttta tggttttttg aaatcaacga ttctttcggg ggattggtct
     1141 ggattcttgt attcctttac taaatcgcta ggaggggata tgctcggagt attagcctat
     1201 tatttgctaa gtcctttcaa tcttatttat gtcattactc cattaagtca ttttagttta
     1261 gcagtatttt taaccatttg gctccgttac ggagcgattg ggatgagttt tgcatatctt
     1321 cttattaagc gttatagagg tcttgatgct actgcatggc tggtgccact tatgtcaaca
     1381 gcctatgcat tatctggtat gttagtttct tatcagatga acccaatctt ttatgatgca
     1441 atgattatgt tgccactagt gatcgttgcg ctagaggagt tattggatgg tggtaagcca
     1501 tttcgttata tatggacttt ggcactgacc atctttactc aattttacat gggttacatg
     1561 attagtctct ttgttgccat gtatgcctgc ttttatgtat cccctcgctt atcaattgtt
     1621 ggggattgga gacagaaatt acgtaatttc ttttcccctc ttttgaaggc ttttatttat
     1681 tctgtcatag gagtagggtt agtagctgta ttgctctatc cggtggtatt aaaccttatg
     1741 caaagtaagg ggcaagtagg ctcgggtatg gagtttagct ttgctttaca aattaatcct
     1801 ttcgatattt tatcaaaatt gaccattggt ggttttgata cgagttctgg ttggtcagcc
     1861 ggacctaatt tgccaaatat ttatattggg gcgctggctt tatttggttt tattctttat
     1921 tttagatttg ctgagacgca tcgtaatcaa aaaatcggag cctgtattat attagtaatc
     1981 tttttcgttt cctttattaa tgagtttgtt agtaagattt ggcatatggg gcagaatcct
     2041 gcaggtttct ttttccgatt ttcttggatt ttatcctttt atatgatttt gctggcgttt
     2101 caaaccttta aatcaaagcc aaagatttca tacagaagtt ttatcattgg acttagtata
     2161 cttatcgctg cagcagttta tgttctgagt caaagctata gctatatttc taaagtgcaa
     2221 cctatgattg taacaagttt tgttcgacaa tatttgttat tgattctgtg ttttgtggtt
     2281 ttattaatag cggggatact tttcttctgt tggaaaaaat ggcagtggtc tcaaaaaaaa
     2341 gtaattggtt ttacggctat tttgacaatt gtagggatga cgagtatcat cctattacaa
     2401 caagggtatt ttctgactca ggtagtattg acagttattg tctggatagt aatcttatta
     2461 tcttttgttt tacagcaaaa tcgtttgacg tggacaacat tgattatagt tactattttt
     2521 gaacttgggt ataatgcgta tttatctcag tcaacttttt tctacgcaga tgcttataaa
     2581 tttagagatg caacaatatc tgttaagcgt gtgaccgaca gtatccggga caatactgaa
     2641 actaagtttt atcgtatagg ctcaagtttt tcttattcaa aaacggcacc aacattatta
     2701 tcttatccag gattaagtag ttttagttct agtttggagc gttcaacaat ggatttgttt
     2761 tcttatttag gtgatgtggg tgtaaatgct gctactcagt atgctaacgg aacagcactg
     2821 acagatgcac tttatggcgt acgttattat atggatatta aagagtatac acaagaagaa
     2881 gttgaaaata atccacaaaa aatgtacttt acacgccatt caaaacgttt tgatctcgca
     2941 gaatattata caaatgcagt ctatgaagat ggtcgttaca tcgtttatga aaatccgaac
     3001 gttttctcaa ttgctttcgg aactaacaca cttgttcaaa acattaagtt tggtttcaat
     3061 aatcctgtag caaaccaaaa tattattctt aattctatgg cgggagatac aaaagaccaa
     3121 gttggctatt ttcaaacttt tggtttttcg ggatttgaaa cacaaaatat ggaagagaca
     3181 acaaatgata aaggggaaat tatttataat cgaattgata aaaatcaacc tggaattatt
     3241 cgttataaaa ttattcctaa gagtagctat acttattact tcctaacccc atatctttta
     3301 aaccaagcag aaggtaaact ttcaatatta cttaataata aatggttaac gaatcaaaag
     3361 agtttttctc agagacaact ttggcaactc acttcaaata ctgaagggca ggaaacggtt
     3421 ctggaattgc ggtattcaat ggataatgtc agtttaaatg gagcagggct tgtgcgtgca
     3481 gacaacgatg cgattaagcg ggtgttggca gagcgtttgg aacagaatat gacggttaca
     3541 gaatggtcaa atacatgtgt taaaggagtg gtaaatatta ctgatgatag tagtataatg
     3601 atgaccacta ttccctatag taaagggtgg acagtaaagg ttgatgggaa agctgtcatg
     3661 actaagaagg cgtggaatag cttgttatcg tttccgataa gtgcagggaa acacactatt
     3721 gagatatctt tctttccaca aggattattt ataggagcca tgttgagttt agttttttta
     3781 ggtgttgtca ttggtctgta ttataaagat tgaaagaata gggactgtta ggaggacgta
     3841 ataaaggtgg gaaaaagcta tctgctgatg agaaggttct ttaaatctga agttttcaaa
     3901 tacttatttt ttggagtttt aacaacagtt gtttatattg tttttagaga gtttcttttt
     3961 atcttaatgc ataatgtaac agcctctgtt ttagtggcca atgtaatagc tattgttttt
     4021 gcattttttg tgaacgacta ttttgtattt gagcaaagaa gaagtggttg ggtagggcga
     4081 tttgttaaat tttttctagc aaggctaact actcttggtt tggatatgct tttggctttt
     4141 cttcttattg agcaatttcc agaaattata ggtcagtttg tccaata
//
LOCUS       DASGBY010000144         4138 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.145, whole genome shotgun sequence.
ACCESSION   DASGBY010000144 DASGBY010000000
VERSION     DASGBY010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.145"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            115..810
                     /locus_tag="U1396_001786"
     CDS             115..810
                     /locus_tag="U1396_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate--cysteine ligase"
                     /protein_id="HEM5342943.1"
                     /translation="MKLLITSGGTSEAIDQVRAITNHASGNLGKIIAEQALKRGHEVT
                     LVTTRQAVKPDSQKNLTIIEITNVDSLKETLEPLVKSHQALIHSMAVSDYTPVYMTGL
                     DELRATEDSSSLLKKQNTESKISSKDDYQVLFLKKTPKVISYVKKWNPAITLFGFKLL
                     VNVPKEELFAVARQSIERNGADYILANDLKDIGENQHIAYLVDKTREIQAQTKDEIAQ
                     LILNTLEKGEQNG"
     gene            803..1351
                     /gene="coaC"
                     /locus_tag="U1396_001787"
     CDS             803..1351
                     /gene="coaC"
                     /locus_tag="U1396_001787"
                     /EC_number="4.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HEM5342944.1"
                     /translation="MANITLAVTGSISAYKAADLTSQLTKLGHQVTVLMSRSAMDFIT
                     PLTLQSLSKNLVHTDVMIEENPTLIKHIDIAKETDVFLVAPASANTIAKLANGMADNI
                     ITATALALPIGTKKLLAPAMNTNMYLNPATQKNIKTLIEYGFEEIKPREALLACGDFG
                     TGALAEVTDILEKVSNTLDEKK"
     gene            1338..1907
                     /locus_tag="U1396_001788"
     CDS             1338..1907
                     /locus_tag="U1396_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5342945.1"
                     /translation="MKKNKSTQIATIAIFFAVMIVINILSSIIFNILPVPIKPTIVHI
                     PVIIASIIYGPRVGACLGALMGLMSMTHNTIILLPTSYLFSPFVENGNVYSIIIAVVP
                     RILVGITPYFVYKWIKNRKGLFIAGAIGSMTNTIFVLGGIFFLFSSVFDGNIQAMLAT
                     VLGTNSIAEMIISSVLTAALVPTLQKIQK"
     gene            1998..3716
                     /locus_tag="U1396_001789"
     CDS             1998..3716
                     /locus_tag="U1396_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM5342946.1"
                     /translation="MTYQETYQTWLDFADLPDYLREELVAMDEKTKEDAFYTNLEFGT
                     AGMRGYIGAGTNRINVFVVRQATEGLAKLVESKGEEAKKRGVAIAYDSRHFSPEFAFE
                     SAQVLAAHGIKSYVFESLRPTPELSFAVRHYNAIAGIMVTASHNPKEFNGYKVYGEDG
                     GQMPPADADALTNFIRAIDNPFAVELADLEASKENGLITVLGEETDVKYLEELNDLNI
                     NPELIAEYGKDMKIVYTPLHGTGEMLARRALAQAGFESVQVVEAQATADPDFSTVASP
                     NPESQAAFALAEELGREVGADVLLATDPDADRVGVEVRQADGSYWNLSGNQIGAIIAK
                     YILEAHKQAGTLPANAALAKSIVSTELVTKIAESYGATMFNVLTGFKFIAEKIQEFEE
                     KHNHTYMFGFEESFGYLIKPFVRDKDAIQAVLMVAEIAAYYRSRGMTLADGIDEIFKE
                     YGYFAEKTISVTLSGKDGAEQIKAIMAKFRDNSPAQFNATDIAVFEDFALQTKTDKDG
                     NIEKLTTPPSDVLKYTLADDSWFAVRPSGTEPKIKFYIATVGETLAEAEEKISNIEKE
                     INEFVG"
     gene            complement(3879..4138)
                     /locus_tag="U1396_001790"
                     /pseudo
     CDS             complement(3879..4138)
                     /locus_tag="U1396_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003002869.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1269 a          878 c          786 g         1205 t
ORIGIN      
        1 acaggccctt atattttttt gtattagcag catcattttc cagtgtcaca gattgattag
       61 caaatcgatt agtgcaaact ttacgaaaaa tagaaattct agtaaaatat gaacatgaaa
      121 ctattgatta catcaggcgg aacaagtgaa gctatcgatc aagtccgcgc tattacaaac
      181 catgcttctg gaaatcttgg aaaaatcatt gccgaacaag ccttgaaacg cggtcatgaa
      241 gttactcttg tgactacaag acaggctgtt aaaccagatt ctcagaagaa tttaaccatt
      301 atcgaaatca caaatgttga tagtttgaaa gaaacattag aacctttagt caaatcacat
      361 caggccctga ttcatagcat ggctgtatcc gattatacac ctgtttatat gactggttta
      421 gatgaactaa gagcaactga agacagttct agtctactaa aaaaacagaa tacagaaagt
      481 aagatttcat ccaaggatga ctaccaagtt cttttcttga aaaaaactcc caaggtcatt
      541 tcctatgtaa aaaaatggaa tccagctatc acactctttg gcttcaaact attggttaat
      601 gttcctaagg aggaattatt tgccgtagct cgccaaagca ttgaacgaaa tggcgctgat
      661 tatatacttg ctaatgactt gaaggatatt ggagaaaatc aacacattgc ctatttggtt
      721 gataaaacaa gggagattca agcacagaca aaagatgaaa ttgctcagct cattttaaat
      781 accctagaaa aaggagaaca aaatggctaa tatcacactt gccgttactg gctctatttc
      841 agcctacaaa gcagctgacc taactagtca attgaccaag ctcggtcatc aggttacagt
      901 cctcatgagt cgctctgcta tggacttcat cacacctttg actctccaat ccttgtcaaa
      961 aaatctggtt cacacagatg tcatgattga agaaaatcct actcttatca agcatatcga
     1021 tattgccaaa gaaacagacg tatttttagt tgcccctgct tctgccaata cgatagctaa
     1081 attagctaat ggtatggctg acaacattat tacggcaaca gctctggctc tgccaattgg
     1141 tactaaaaaa ctgctggcac ctgctatgaa tactaacatg tacctcaatc ctgctaccca
     1201 gaaaaatatc aaaaccctca tagagtatgg ttttgaggaa atcaaaccgc gtgaagccct
     1261 gcttgcttgt ggagattttg gaactggggc cttggctgag gtaactgata ttttagagaa
     1321 agtgagtaac acccttgatg aaaaaaaata aatcaactca aattgctaca attgcaatct
     1381 tctttgctgt catgattgtc atcaatatat tgagttcaat tatttttaat atattgcctg
     1441 ttccaataaa acccaccatc gtacatatcc cagtcattat tgcttctatt atatacgggc
     1501 cacgtgttgg ggcttgtttg ggggctctca tgggcttaat gagtatgacc cataatacta
     1561 ttatcttact accaaccagc tatcttttct ccccatttgt tgaaaatggt aatgtttatt
     1621 caatcatcat tgcagttgtc ccacgtatat tagtcgggat tacaccttat ttcgtctaca
     1681 aatggataaa aaatcgtaaa ggattattta ttgctggtgc aattggttca atgaccaata
     1741 ctatttttgt acttggaggt attttcttcc tcttctcctc tgtctttgat ggtaatattc
     1801 aagcaatgtt agcaaccgtt ttaggtacca attcaattgc agaaatgatc atttcttctg
     1861 tattaactgc agcgcttgtt ccaactttac agaaaattca aaaataaata tcagaaaatc
     1921 atgtgaaagc gtgatttttc ttttcaaaca tggtataatg aaagcgttta atagaaaaat
     1981 ttttaaggag atatgcgatg acttatcaag aaacctatca aacatggctc gactttgcgg
     2041 accttccaga ttacttgcgt gaagaattag tcgcaatgga tgaaaaaaca aaagaagatg
     2101 ccttctatac aaatcttgaa tttggtacag ctggtatgcg tggctatatt ggcgctggta
     2161 ccaaccgcat caacgtattc gtagtccgtc aagctactga aggtttggca aaattggtag
     2221 aatcaaaagg tgaagaagct aaaaaacgtg gtgttgccat cgcttacgat tcacgtcact
     2281 tctcgccaga atttgctttt gaatcagctc aagttttggc agcgcatggt atcaaatctt
     2341 atgtatttga aagccttcgt ccaactcctg agttgtcatt cgctgtgcgc cattacaatg
     2401 ccatcgcagg gattatggtg actgcaagcc acaacccgaa agaattcaac ggctacaagg
     2461 tttacggtga agacggcgga caaatgccac ctgctgatgc agatgcattg accaacttta
     2521 tccgtgccat cgacaatcca tttgcagttg aattggctga ccttgaagcc agcaaggaaa
     2581 atggtttgat tacggttctt ggcgaagaaa ctgacgttaa atatcttgaa gaactcaatg
     2641 acctcaacat caaccctgaa ttgattgctg aatacggtaa agacatgaag attgtctata
     2701 caccgcttca tggtacgggt gaaatgttgg cgcgtcgtgc ccttgcacag gctggttttg
     2761 aatctgtcca agttgttgaa gcacaagcaa ctgctgatcc tgacttctct actgtcgctt
     2821 caccaaaccc agagagccaa gcagcctttg cccttgcaga agaactcggc cgtgaagtcg
     2881 gggcagatgt ccttcttgca actgaccctg acgctgaccg tgttggtgtt gaagttcgtc
     2941 aagctgacgg ttcttactgg aacctgtctg gtaaccaaat cggcgctatc attgctaagt
     3001 acatccttga agcccacaag caagcaggta cacttcctgc aaacgctgcc cttgctaagt
     3061 caatcgtatc tactgagttg gtaactaaga ttgctgaaag ctatggcgct accatgttca
     3121 acgtcttgac tggtttcaaa ttcatcgctg agaaaatcca agagttcgaa gaaaaacaca
     3181 accatactta catgtttggt ttcgaagaaa gctttggcta tttgattaaa ccatttgtac
     3241 gtgacaagga tgctatccag gctgtgctta tggttgctga aattgctgcc tactaccgtt
     3301 cacgtggcat gaccttagct gacggtatcg atgaaatctt caaagaatac ggctactttg
     3361 ctgagaaaac aatctctgtt accctttctg gtaaggatgg tgcagaacaa atcaaggcaa
     3421 tcatggctaa gttccgtgat aactcaccag cacaattcaa cgctactgac atcgcggtct
     3481 ttgaagactt tgcccttcaa actaagacag acaaagatgg aaacattgaa aaactcacta
     3541 ctcctccatc agatgtcttg aaatacacct tggcagatga ttcttggttc gctgttcgtc
     3601 cttcgggaac agaaccaaaa atcaaattct acatcgcaac cgttggtgaa acacttgctg
     3661 aagcagaaga aaaaatctcc aacatcgaaa aagaaatcaa cgaatttgtt gggtaagagt
     3721 cacataaatt agaaagtaca aaccacccgt gaaaacgggt agtttgtaca ctggctataa
     3781 gcccacatca ccagccagcg cctaaagacg ctggctttca ctttgttcaa gcctcactgc
     3841 ttttgactcg tcactagcct cttaaagagg cattcgtact acttgccatt atccctaaag
     3901 ggatcttcat actcttttac actcaattta tcaagtgcta tatcatgttt aactcgcttt
     3961 ctagatttaa gctcgtgaag aaatcatcca ctggataatt tctttgttct tgtatatatt
     4021 tcttaattgt ggcttcatta agtccaactt acactcttca acaattcccc aaattgttga
     4081 agccctctgt ccagaaatga cgattgccaa atttatattt gagattagcg tgtttatc
//
LOCUS       DASGBY010000145         4076 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.146, whole genome shotgun sequence.
ACCESSION   DASGBY010000145 DASGBY010000000
VERSION     DASGBY010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.146"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(86..1027)
                     /gene="msrB"
                     /locus_tag="U1396_001791"
     CDS             complement(86..1027)
                     /gene="msrB"
                     /locus_tag="U1396_001791"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001865281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEM5342947.1"
                     /translation="MKEIYLAGGCFWGMEGYFSQIDGILDTSVGYANGQVETTNYQLL
                     KQTDHAETLYLAYDETRINLREILLYYFRVIDPFSVNQQGPDKGRQYRTGIYYTDKAD
                     LPTIEQVMMEQSQLFGGRPLAVEVEPLAHYIPAEDYHQDYLKKNPQGYCHIDLGQAKI
                     PLIDVADYQKPDQQVLKDSLTDLQYQVTQEAATERPFENEFWNSDQAGIYVDITTGEP
                     LFLSTDKFDSGCGWPSFTKPISKEVATYFQDKSHGMNRIEVRSRAGHAHLGHVFDDGP
                     RDKGGLRYCINSAALRFIPREEMEAAGYGLFLDLLSE"
     gene            complement(1067..2596)
                     /locus_tag="U1396_001792"
     CDS             complement(1067..2596)
                     /locus_tag="U1396_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEM5342948.1"
                     /translation="MSTISYKPLNLYRQFKTAAQEFPNVAIYFDKPYASFPELGLENT
                     YQTVFEAIQKRAAQFSAAGIGYGDKVILYKSPAFDTYLLAVAVTALGAVPVMISYHLP
                     SSNLDVFAERLEKSFIVYDQETEERVAGMTRTDLVTKVFLPQVLVQEAVAFEENLLPE
                     DVIQYMTHTSGTTGVPKLICHTAQTMGWRVAWQQTIFDKMTERGLLAFHISPVHSRYN
                     IGVSSAIGLGFPLYPLSSARKDDVERALALHRPSALETHPNNFVQWARLAKEKPEVFS
                     SIRYYHSTFDAINIGTLRAFLEASKEQHPVFMQVYGQSECGPMILRYHRLENLGTVSG
                     RDMGIGLEGYTEARITDAQGNPLPAGENGHIQFLSKGRAVTYYKEDARFQDNVYGAWW
                     DSGDYGCMTPEGTLLLKDRQVDLIEHIDSNLALEDLLLDKLDFLSEVVIIRDVNGAPQ
                     PIIALVEDAEMNWEAWWAMVADLPLLKEPILMAYDDIPRTATMKVQRLKMEAEMKEKN
                     L"
     gene            complement(2729..3043)
                     /gene="trxA"
                     /locus_tag="U1396_001793"
     CDS             complement(2729..3043)
                     /gene="trxA"
                     /locus_tag="U1396_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM5342949.1"
                     /translation="MVQVITDANFEVETQEGVVLVDFWAPWCGPCRMQAPILEQLADE
                     VDEDELRIYKMDVDENPNTARQFGIMSIPTLLFKKDGQVVKQVAGVHTKNQIKAILAE
                     IG"
     gene            complement(3283..3603)
                     /locus_tag="U1396_001794"
     CDS             complement(3283..3603)
                     /locus_tag="U1396_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342950.1"
                     /translation="MHQLYQMLQDLYTKADQIDYATINAIEKEIERWLIRSIYAPLKL
                     REKNAILKQHKKKIQTIGNDGENSVKLIANSFDTSIKGEFSKKVQQVVKEKAKEYTKL
                     EEVE"
     gene            complement(3616..4002)
                     /locus_tag="U1396_001795"
     CDS             complement(3616..4002)
                     /locus_tag="U1396_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342951.1"
                     /translation="MDQYDKLKAELMKKEWEWEDIENQQRKAQKELQEHYENVEETTR
                     ILTRMLEEKYQEVLLELRQVGDETGDLHHLLNNGMSEWHTAIDQERYSSIHRLDQKQE
                     DLDTYYKNQYRKMQDQIDEIYTKYRE"
BASE COUNT         1051 a          908 c          839 g         1278 t
ORIGIN      
        1 taacttttca aataaaaagg ataataaaga gcttaagttc aataccttaa gctctttaat
       61 ctatttactt tgaagtgttt ccctgtcatt ctgacagcaa atccaaaaac aagccatatc
      121 ctgctgcctc catttcctct ctcggtatga agcgaagggc tgcggagttg atacagtaac
      181 ggagaccgcc tttgtcacgt ggtccgtcat caaagacatg acctaaatga gcatgaccag
      241 cccgactgcg gacttcaata cggttcatgc cgtgggactt atcttggaaa taagtcgcca
      301 cttccttgct gattggtttg gtaaaggagg gccagccgca gcctgaatcg aatttgtctg
      361 tcgagagaaa gaggggctca ccagtcgtaa tatcgacgta gatgccagct tggtcgctat
      421 tccaaaactc attttcgaag ggtctttccg tcgcagcttc ttgagtgact tgatactgga
      481 ggtcggtcaa gctgtctttc aagacttgct ggtctggctt ttggtagtct gcaacatcaa
      541 tcagagggat ttttgcctgc ccaagatcga tatggcagta cccttgggga tttttcttga
      601 gataatcctg atggtaatct tcagcgggga tgtaatgtgc gagtggctcc acttcaacgg
      661 ctagggggcg tccgccaaag agctgggact gctccatcat gacctgctcg atggtcggca
      721 aatcagcctt atctgtgtaa tagataccag tccgatactg gcgacctttg tcaggtccct
      781 gctgattgac agagaaggga tcaatgacgc ggaaataata gaggagaatt tcccgcaaat
      841 tgatacgagt ctcatcatag gctagataga gtgtctctgc gtggtctgtt tgtttgagga
      901 gttgataatt ggtcgtctcc acctgtccat tggcatagcc aacgctggtg tcaagaatac
      961 catcgatctg ggaaaagtag ccttccatcc cccagaaaca accgcctgct aggtagattt
     1021 ctttcatgtg aactccttct tatctgcaag cgtggtttcg tcacccttac agattttttt
     1081 ctttcatttc tgcttccatt ttgaggcgtt gaaccttcat ggtcgctgtt cgtggaatat
     1141 cgtcataagc catcaagata ggctctttca atagtggtag gtctgcaacc atggcccacc
     1201 aagcttccca attcatctca gcatcttcta ccagagcgat aatcggctgc ggtgcaccat
     1261 tgacatcgcg gataatcacg acttctgata aaaagtccaa tttatccagc aataagtctt
     1321 ccaaggcaag gttgctgtcg atgtgctcaa tgaggtcaac ctgacggtct tttagaagaa
     1381 gcgtcccctc tggagtcatg cagccgtagt cgccactatc ccaccaagca ccgtacacat
     1441 tatcttggaa gcgggcatct tctttgtagt aagtcacagc acggcctttt gacaggaact
     1501 ggatatgtcc gttttctcca gctgggagag gattcccttg ggcatctgtg atgcgtgctt
     1561 ctgtgtaacc ttccagacca atccccatat ctcgtccgct aactgttcct aggttttcca
     1621 agcgatggta acgtaaaatc attggaccac attcactttg accataaacc tgcataaaga
     1681 ctggatgctg ctctttagaa gcctccaaga aggcgcgaag cgtaccaata ttgatagcat
     1741 caaaggtcga atggtaataa cgaatgctac taaagacctc tggtttttcc ttggccaatc
     1801 ttgcccattg gacaaagtta ttcggatggg tttccagagc acttggacgg tgaagagcaa
     1861 gcgcccgttc aacatcatct tttcttgcag aggaaagcgg gtagaggggg aatcctagcc
     1921 caatcgccga cgacacgccg atattatagc gtgaatgtac aggggagata tggaaggcca
     1981 acaagcctct ctccgtcatc ttgtcaaaaa tagtttgttg ccaagctact cgccagccca
     2041 tggtctgtgc tgtgtggcag attagttttg gaacacctgt cgtccctgaa gtatgagtca
     2101 tgtattgaat aacatcttct ggcaggagat tttcttcaaa agcaactgct tcttgcacta
     2161 ggacttgggg taaaaatacc tttgttacca ggtcagttcg agtcattcct gctacacgtt
     2221 cttccgtttc ttggtcgtag acaatgaaag acttttccaa tcgctccgca aacacatcta
     2281 aattcgaaga tggcaaatgg taggaaatca taacaggaac agcacccaat gccgttaccg
     2341 ctactgctaa caaataggtg tcgaaagctg gactcttata tagaattacc ttgtccccat
     2401 agccaatacc tgctgctgaa aattgggcag ctcttttttg aatagcttca aaaactgttt
     2461 gataggtatt ttccaatcct aattcaggga aagatgcgta gggtttgtca aaataaatgg
     2521 caacatttgg aaactcttga gctgctgttt taaactgacg atagagattt aatggtttgt
     2581 aactaatagt tgacatatct aacctttcta aaatgacaat gataaggtta ttataacatc
     2641 ttgtgccaac cttcacaatc tgatatcttt ttatgactca cagttgtgaa aaaacaagta
     2701 gtcaatcacc acttgctttc attttcaatt aaccaatctc tgccaagata gctttgattt
     2761 gatttttcgt gtggacacca gcaacttgtt tcacaacctg tccatctttt ttgaacaaaa
     2821 gagttgggat agacatgata ccaaactgac gagctgtgtt tggattctca tcaacatcca
     2881 tcttgtaaat acgcaattca tcttcgtcca cttcgtctgc taattgttcc aagatcggtg
     2941 cttgcatacg gcatggacca caccatggtg cccaaaaatc tacaaggact acgccttctt
     3001 gtgtttcaac ttcaaagttt gcatctgtaa taacttgaac cataattttc tccgtttctg
     3061 tttttctact atcattctac accaaaaaaa aacagaaagc gaatttttgc tacgggatga
     3121 agcatgagat aaacgtatct ataagaattt cagttgtaaa aaaatgggta tagctaaact
     3181 agaccgcagg aggacgaggg ggaactggga gactgttctt cctataaaat ccagttttag
     3241 caatgggaaa agatttacga aaggatgcta cgggatgaga tattactcta cctcttccaa
     3301 ttttgtatat tcttttgcct tttctttcac aacttgttgt accttttttg aaaactcgcc
     3361 ttttatactt gtatcaaaac tgtttgcaat caattttacg gaattttctc catcatttcc
     3421 aattgtttga attttcttct tgtgttgttt taaaattgca tttttttctc gcagtttgag
     3481 tggagcatag atagagcgaa tcagccaacg ttcaatttct ttctctatag cattaatcgt
     3541 cgcatagtct atctggtcag ctttggtata taaatcttgc aacatttgat aaagttgatg
     3601 cattggctct cccttctatt ctcggtattt tgtataaatt tcgtcaatct gatcttgcat
     3661 ttttcggtac tggtttttat agtaggtatc caagtcctct tgtttctgat ccaatcggtg
     3721 aatggagctg tatcgctctt gatcgattgc ggtatgccat tcggacatgc cattgttgag
     3781 taaatggtgc aagtctccag tctcgtctcc gacttgtcgc aattctaaca gaacttcttg
     3841 atacttttct tccaacattc gagtcaatat tcgagtggtt tcttcaacat tttcatagtg
     3901 ttcttgtagt tctttttgag cttttcgttg ttgattctca atatcctccc attcccactc
     3961 tttcttcatt aactctgcct ttaatttatc gtactggtcc attcttgtat cctctgtgct
     4021 aatgtctggt cttccgttac tttctgctcg atccctgctt ggatttgact ttctaa
//
LOCUS       DASGBY010000146         3980 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.147, whole genome shotgun sequence.
ACCESSION   DASGBY010000146 DASGBY010000000
VERSION     DASGBY010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.147"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            92..318
                     /locus_tag="U1396_001796"
                     /pseudo
     CDS             92..318
                     /locus_tag="U1396_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195665.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            337..1083
                     /locus_tag="U1396_001797"
     CDS             337..1083
                     /locus_tag="U1396_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HEM5342952.1"
                     /translation="MRRNYSKVIEEMRTIHGLNLVAIGQRIGTDPRTVGKWAQGKHQP
                     NKDSRKKINNLYREVKQSMTTQTTIEPFEDFYDWSKMKKKKPTTEVIATQQFGNKSFE
                     IYGNKDNPLFIAVEVAEMIEVQNTTDLLKRIDEDEKLTYVISRAGQKREVNMLTEFGL
                     YEVLFQSRKPKAKEFKKVVKNILKEIRVNGYYMQGELIQDQPTQSAIELNSDMAYIKN
                     RLAELQSMTTMADIKIGLAKTYRIAELMED"
     gene            1096..1722
                     /locus_tag="U1396_001798"
     CDS             1096..1722
                     /locus_tag="U1396_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM5342953.1"
                     /translation="MELVYMDGRKEPYTLSSIVAECANISHHAVQEHIRKQKDRLERF
                     GKVSFQMRPLPSGQQAKDYILNEQQATLLITFLKNTEQVANFKENLVKAFFEMRDELA
                     QFRYQRALEKPKRKALHEAIETWQEAPKHAHSTVTNLLLKGTTGMNKRQLMAHRGGHN
                     GIDSLTSQELIRYQALEDMAIAMINLGMTYQDIKNMVFRPLKNAPQGA"
     gene            2186..2587
                     /locus_tag="U1396_001799"
     CDS             2186..2587
                     /locus_tag="U1396_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342954.1"
                     /translation="MKDNNRETIIHFEMSNQEYAPVKNAISEELEAVIRKVYQLDHET
                     GWTLHYLTEIMLNHFHEDVARVQYGDLTPIECSLNSITHRVESAKVALLKAGYEDKIE
                     VGNPMWYLKLILQDFEHMKKLAKKEVKKCKK"
     gene            2575..2778
                     /locus_tag="U1396_001800"
     CDS             2575..2778
                     /locus_tag="U1396_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342955.1"
                     /translation="MQEMTIETALTLIAIFTPLNLYLWFGVGLGTYQLDIEPKIKTEG
                     KDTRPLKNERYGAYIQLAGKHYN"
     gene            2790..2939
                     /locus_tag="U1396_001801"
     CDS             2790..2939
                     /locus_tag="U1396_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342956.1"
                     /translation="MLTFRELERIAETILKHTTPEETQCYLDMDHDSKLLWIKYKIAS
                     LEVQA"
     gene            2936..3274
                     /locus_tag="U1396_001802"
     CDS             2936..3274
                     /locus_tag="U1396_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342957.1"
                     /translation="MTENRLPPHLYKVFKLLPLGMELPITGADMERLTGLDIRTIREN
                     IRQLIVDYGIPVCGGRDNKQGGYYIPQNETERLAGVLPLQRQYDQEHKRIHALLTADL
                     EDWRKYRDEA"
     gene            3264..3548
                     /locus_tag="U1396_001803"
     CDS             3264..3548
                     /locus_tag="U1396_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM5342958.1"
                     /translation="MRLELTAQSEIDLKTGILELIENYLEAREQTPPRLLGLITAQQV
                     KDELGIKDKTLKRWEDNGLRRYQPPLEDTRKIFYRVSDILVFLGVENGKN"
     gene            3535..>3980
                     /locus_tag="U1396_001804"
     CDS             3535..>3980
                     /locus_tag="U1396_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer N-terminal
                     domain-containing protein"
                     /protein_id="HEM5342959.1"
                     /translation="MAKTKIYFWLKIDKKFFDNIFIKRLKTIPGGYTMTVIYIRLMLE
                     SLESDCILYYEGYFENLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDKNAELPQA
                     KAMVMSETNWASYKREQRQNKERLDNVQKSLTNSNSCPTEIEIEKD"
BASE COUNT         1465 a          750 c          871 g          894 t
ORIGIN      
        1 aaaaaaataa aacttttgta aaaaaacact tgactaagta cgaaaataat agtactattg
       61 ttttatcact tttggaagga gctaaaagag tatgacgcaa tggacgctga aggcgtgtcg
      121 agtaaatgca ggttatacct tgcgacaggt agctaaaaaa gtaggcaaga attttcaaac
      181 tatctcaaag tacgaaaaag atagtactat aatccctttt gagttgttga aagacttgtc
      241 caagttgtat cgtgttaagt tagatgatat tttttaggcg acagtacgaa aaaaatagaa
      301 ctaacgccag aggaataaga aaggagcagg caagcaatga gaaggaacta tagtaaagtc
      361 attgaagaaa tgcgaaccat tcacgggctg aacttggttg ctattggtca gcgtatcgga
      421 acagaccccc gaacagttgg caagtgggca cagggcaaac accaacccaa caaggacagc
      481 agaaagaaaa tcaataatct atacagagag gtaaaacaga gtatgacaac acaaaccaca
      541 attgaaccat tcgaagattt ttacgactgg tcaaaaatga agaaaaagaa accgactacc
      601 gaggttatcg ctactcaaca attcggaaat aagtcatttg aaatttatgg aaataaagac
      661 aacccacttt ttattgctgt tgaagtggct gaaatgattg aagtacaaaa tacaaccgac
      721 ttattaaaaa ggattgatga agatgagaag ctgacctatg taatatctag ggcaggtcaa
      781 aaacgagaag taaacatgtt aactgagttt ggactttatg aagtactttt tcaatcacgc
      841 aaaccaaaag ccaaagagtt taaaaaagta gtcaaaaaca tcttgaaaga aattcgtgta
      901 aacggctact acatgcaagg tgaactaatt caagaccaac caacccagtc agctatcgag
      961 ctaaattctg acatggctta catcaagaac cgacttgcag agttgcaaag catgaccacc
     1021 atggcagata ttaaaattgg actggccaaa acataccgaa ttgctgaact tatggaagac
     1081 tagaaaggga caagcatgga attagtttac atggacggac ggaaagagcc gtatacattg
     1141 agcagtattg tagcagaatg cgccaacatc agccatcacg cagtacagga acatatcaga
     1201 aagcagaaag ataggcttga acgatttgga aaggtctcat ttcaaatgcg acctttaccg
     1261 agtgggcaac aggcaaaaga ttatatctta aacgagcaac aggcaacttt gctaatcact
     1321 tttctaaaga ataccgagca agttgcaaac tttaaggaga acctagtcaa agcattcttt
     1381 gaaatgcggg acgagctggc acaattccga tatcagaggg cactagagaa gcctaagcgt
     1441 aaggcactac atgaagctat tgaaacatgg caggaagccc caaaacacgc gcacagcacg
     1501 gttacaaacc ttttgctaaa gggaactact ggaatgaaca aacgccagct aatggcacac
     1561 cgtggcggac ataatggtat tgacagccta accagccaag agcttatcag ataccaagca
     1621 ttagaagaca tggctattgc tatgatcaac ttaggcatga cataccaaga tattaaaaat
     1681 atggtattca gaccactaaa aaacgcacca cagggcgcgt gagattaaca aaaaaaggct
     1741 taccgagacc aatcagcaaa gccttttaac cactaactaa aacaaaatta acaagcaggc
     1801 aagctgttat taaaagggtt ttagtaaatg ttttatagct agattatacc atatctagga
     1861 cactttgacc atacagaggg cgctaaccct taaaactgga gcagaaaagt attaggtgct
     1921 ggtatcgcca ttaggtagcc atggaccaag agcagcctaa accaccctaa gaaaatcaca
     1981 cacagcaagg ctattatttt ggcacaggct tacacgacca cagggggacc tggtaagtct
     2041 ggggcgggca accgctggga atagtctggg ctaggtatag aaatcgtata gtaaagaacc
     2101 aataagcaaa gtcttttgaa ctcacggaga cagcccacac aggccattac acagacacaa
     2161 taaaagaaac agaggcaaga actacatgaa agacaataac agagaaacga taatccattt
     2221 tgaaatgtct aaccaagaat acgcacccgt aaagaatgca atatcggaag agctagaggc
     2281 ggtcatcaga aaagtatatc agctagatca tgaaacagga tggacattgc actatctaac
     2341 cgaaatcatg ctgaaccact ttcatgagga cgtggcacga gttcaatatg gcgatttgac
     2401 accgattgag tgcagtttga acagtataac tcaccgagtc gagagcgcaa aggtagcact
     2461 cttaaaagct ggatatgaag acaagattga agtaggtaat cctatgtggt atttaaaact
     2521 aatcttgcaa gattttgagc atatgaaaaa actagccaag aaggaggtta aaaaatgcaa
     2581 gaaatgacaa tcgaaacagc tttaactttg atagcaatct ttacaccgct gaacctctat
     2641 ctatggtttg gcgttggttt aggtacttat cagcttgata tagaacctaa aatcaagacc
     2701 gagggtaaag atactagacc gcttaaaaac gagcgctacg gggcttatat acagcttgca
     2761 ggcaaacact acaactagga ggggaaacca tgctgacatt tagagaactt gaacggatag
     2821 cagagaccat tctcaaacac acaacaccag aagaaacgca gtgctatctt gatatggatc
     2881 acgatagtaa attgctttgg ataaaataca aaatcgcaag tctggaggtg caggcatgac
     2941 agaaaatcga ctaccaccac acttatacaa agttttcaag ttactaccgc ttggaatgga
     3001 attgcctatc acaggggcgg acatggaacg attgacaggc ttggacatcc gaaccattag
     3061 ggagaatata cgccagctta ttgttgatta tggcataccc gtttgtggcg ggcgtgataa
     3121 caagcaagga ggctactata tcccccagaa tgaaactgag cgacttgctg gagtgctacc
     3181 gctccaacga caatacgacc aggagcacaa gcgtattcac gcgcttttga ctgctgactt
     3241 agaagactgg aggaagtata gagatgaggc ttgaactaac cgcacaaagt gaaatagacc
     3301 taaaaacagg cattctggag cttatagaga actatctgga ggcgcgtgag caaacaccgc
     3361 caagactgtt agggctaatc accgcccaac aggttaaaga tgaactaggc ataaaagata
     3421 agaccttgaa acgttgggaa gataatgggc taagacgtta ccagccccca ctagaagaca
     3481 ctaggaaaat cttttatagg gtcagtgata ttctggtatt tttgggggtt gagaatggca
     3541 aaaactaaaa tatatttttg gttgaagatt gataaaaaat tttttgacaa tattttcatc
     3601 aagagactaa agactattcc aggcggttac actatgacag taatctatat ccgcctaatg
     3661 cttgaaagtc ttgaaagtga ctgcattctc tactacgaag gttattttga aaatctcaag
     3721 gaagaattgg ctttgaagtt ggatgtgtcg gaagatgata tcgatatgac catggcatac
     3781 tttacaaaat gcggtctgat acagattgat gaagataaaa atgcagagtt accacaggcc
     3841 aaagctatgg ttatgagtga aacaaactgg gctagctaca aacgggaaca acgacaaaac
     3901 aaagagagat tggacaatgt ccaaaagtct ttgactaatt ccaactcgtg tccaacagag
     3961 atagagatag agaaagatat
//
LOCUS       DASGBY010000147         3928 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.148, whole genome shotgun sequence.
ACCESSION   DASGBY010000147 DASGBY010000000
VERSION     DASGBY010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.148"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            14..895
                     /locus_tag="U1396_001805"
     CDS             14..895
                     /locus_tag="U1396_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000384879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM5342960.1"
                     /translation="MQRYLDFCAIQRRLSSHTIRAYKSDLHQYYNFGTNDIRSYLTFL
                     NQHIKKTSTLKRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKDLQ
                     KIYCFAHQQIENSKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQ
                     ILGKGKKERLLYIGNDETLSLLEDYIAHHCSHSSYLFTGVKNDDYLKEQSVRLILKNI
                     SHSLQLKKHITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVE
                     ILSEHNPLNQITPLLRT"
     gene            complement(927..1112)
                     /locus_tag="U1396_001806"
     CDS             complement(927..1112)
                     /locus_tag="U1396_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342961.1"
                     /translation="MSQLVVSLTIPKSHRFEKKSRNDILMKIRIGKSEVTFFQSINPE
                     VMETILDKVLYYDYPTQ"
     gene            1191..1328
                     /locus_tag="U1396_001807"
                     /pseudo
     CDS             1191..1328
                     /locus_tag="U1396_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1401..1601
                     /locus_tag="U1396_001808"
     CDS             1401..1601
                     /locus_tag="U1396_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342962.1"
                     /translation="MVLAIIKQQTSTIEQLTNELTLLREQVEYLRQKLYGKSSEKVVH
                     QPGQLSLFGEESLPEEDADLPS"
     gene            1555..2907
                     /locus_tag="U1396_001809"
     CDS             1555..2907
                     /locus_tag="U1396_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HEM5342963.1"
                     /translation="MGRKACLKKTLTYPVETETITYKRKKAKGIRQAIFSQFTPEIVH
                     HEVQGEDCTCPDCHGQLKEIGSAVQRQELVFIPAQLKRIDHVQHAYKCQACSQKNLSD
                     KIIKAPVPKAPLAHSLGSASIIAHTIHQKFNLKVPNYRQEEDWHKLGLPISRKEIANW
                     HIKSSQYYFEPIYDLLHEKLLEQPILHADETSYKVLENDSQLTYYWTFLSGKHERKGI
                     TLYHHDKRRSGLVVKEFLGDYSGYVHCDMWSAYRQLDKAQLVGCWAHVRRKFFEATPK
                     KADKTSLGAKGLAYCDRLFVLESDWADLSSEERLHKRQTELAPLMDEFFDWCREQSVL
                     PGSKLGTALEYSLKYETTIQTVLSDGDLVLSNNMAERAMKTLVMGRKNWLFSQSFEGA
                     KSTTIILSLLKTAKRHELDTEKYMTYLLDNLPNEETLAKKVVLEAYLPWAERIQNKCK
                     "
     gene            3154..>3928
                     /locus_tag="U1396_001810"
     CDS             3154..>3928
                     /locus_tag="U1396_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000222578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5342964.1"
                     /translation="MGIKDKNIKILFILKHQTHLEIRAKLDYDSPRCPHCQGKCIKYD
                     FQKSSKIPILDCQGFPTLLLLKKRRFQCKSCQKVTVTETALVKKNCQISQPIWEKVTQ
                     LHTKNMTNIAIARRLHISVSVVQRKLAQFQLEHDFTKLPKVLSWDEFSRNKGKLACIA
                     QNFETRSIVTILDNNRQTTIKNYFYKYPRAVRETVEVVTVDMSGSYIPIIKKLFPRAK
                     IVLDRFHIIQHMSRAMMTTRIDIMKTFDTRSLPYRSMKNH"
BASE COUNT         1262 a          815 c          781 g         1070 t
ORIGIN      
        1 gaattacgac actatccaga gatatcttga cttttgtgct attcaaagac gacttagttc
       61 tcatactatc cgagcataca aatctgattt acatcagtat tataactttg ggaccaatga
      121 tattaggtcc tatcttactt ttctcaacca acatataaaa aagactagca cattaaaacg
      181 gaagattgct agtcttaaat catactataa atttctggaa gaagaaaaac taatttcaaa
      241 aaatcccttc catcagcttc gactccacta caaggaagag aaaaagcttc ctaaaacgat
      301 ttccttgaaa gatttacaaa aaatatattg tttcgctcac caacaaatag aaaattctaa
      361 aaataagcat tctatgcgga aagctatgcg aaacctactc cttatctcgc tacttttatc
      421 aactggtcta cgcatctctg aattatgtaa tttaaaactt gataatatca atttggaaaa
      481 tagaaccatt caaatactcg gaaaaggaaa gaaagagcga ctactctata ttggaaacga
      541 tgaaacactt tcgttacttg aagactatat agcgcatcat tgtagtcatt ctagttatct
      601 atttaccggt gtgaaaaacg atgattatct taaagaacaa agtgtgcgct taattctgaa
      661 aaatatttct cactcgctac aactgaaaaa acatatcact ccacatatgt ttcgacatag
      721 ttttgcaact atgttgcttg ataatggcgt cgatattcga caaatacaac atttactggg
      781 ccacagtaac atcaatgtaa cacaaatcta tactcatgtc tctcaaagca agcaggtaga
      841 aattctaagt gagcataatc ctcttaacca aatcacacca ctacttcgta cataagtaac
      901 cgcaaaccaa gtagacttga cctaaatcac tgagtcggat agtcataata cagcacctta
      961 tccaagattg tttccattac ttcagggttg atagattgga agaatgtgac ttccgatttt
     1021 ccgatacgaa ttttcatcag aatatcgttt ctgcttttct tttcaaagcg gtgagatttg
     1081 ggaatagtca atgagacgac gagctgtgac ataaaaaatc ctccagtttt gttttttata
     1141 acagtatact ggaggaggga gtgattggat agataccttg ttattgggcg gttatgattg
     1201 acctaagaca ctatgaatct ggtaacttcc tcgctaagga acacattgcc aagcgtggca
     1261 atccctatgc tagaaaagtt ttgttcaagt gcctttacaa tatcgcttca gctagccaca
     1321 ctaatccttt acgattacga ttcaacccaa agtcagtaaa gttgtttact ccctataatt
     1381 ctaacacctt gtttcaaaaa atggtattgg caattattaa acaacagacc tcaacgattg
     1441 aacaacttac caacgagttg accctccttc gtgaacaggt tgagtatctg agacagaaac
     1501 tctacggaaa atcatcagag aaggtagtgc atcaacccgg tcagctgagc ttgtttgggg
     1561 aggaaagcct gcctgaagaa gacgctgact tacccagttg aaacggagac tatcacctat
     1621 aaacgcaaga aagctaaggg aattcgtcag gctattttta gtcagttcac tccagagatt
     1681 gttcatcacg aagtgcaggg ggaagactgc acttgtccag actgtcatgg tcagttgaag
     1741 gagattggct cggctgttca acgacaagaa ttggtcttta ttcctgcgca actaaagcgg
     1801 attgaccatg tccaacatgc ctacaagtgt caggcatgta gtcagaagaa tctaagcgat
     1861 aagattatca aggctcctgt tcctaaggct cctctggcac atagcttggg ttcagcttct
     1921 atcatcgccc acaccattca ccagaaattc aatctgaagg tacccaatta tcgtcaggaa
     1981 gaggactggc ataagcttgg tttgcccatc agtcggaagg aaatagccaa ctggcacatc
     2041 aagtctagtc agtattattt cgaaccgatt tatgacctgt tgcacgagaa attgttagag
     2101 cagcctattc tccatgcgga tgagacctcc tacaaggtct tagaaaatga tagccagttg
     2161 acctactact ggactttctt gtctgggaag catgagagaa agggaatcac cctctatcat
     2221 catgacaaac gacggagtgg cttggttgta aaggaatttc ttggggatta ctctggctat
     2281 gtacattgtg acatgtggag tgcttatcgg cagttagaca aggctcagct ggttggctgt
     2341 tgggctcatg ttagacgaaa gttctttgag gcaactccta agaaggcaga caagacttct
     2401 ttaggagcca agggcttagc ctattgcgac cgcctgtttg tcttggagag tgactgggct
     2461 gacttgtcta gcgaggagcg actgcataaa cgccagacag agttggctcc cttgatggac
     2521 gagttctttg actggtgtcg tgagcaatct gttttgccag gctccaaatt gggtactgct
     2581 ttggagtata gcctcaaata cgaaaccacc atccaaaccg ttctctcgga tggtgacttg
     2641 gtcctgtcta acaacatggc tgaaagggct atgaagacct tggtgatggg cagaaaaaat
     2701 tggttgttct cccaaagttt tgagggagcc aagtcgacaa ctatcatttt gagtcttttg
     2761 aaaacggcca agaggcacga acttgataca gagaaatata tgacctatct tctagacaat
     2821 ctacctaacg aggaaacact cgctaaaaag gtggttctag aggcttattt accatgggct
     2881 gaaagaattc agaataagtg caaatagaaa aaaagttccg gagtcaagca gactgtggaa
     2941 cgtttttcgg ctctataatt tctgtagtgg gtaaatccac tgtagagatt atggagcctt
     3001 tttgaatata tacaaaaagt cccatataac ctataatgaa aagcaaccac actcacatta
     3061 gaaagactca tatggaataa atccagagtc agggaagtga ctctggattc ctgagcctag
     3121 aaataaaaaa gcgaagatca taccacagaa ctaattggaa tcaaagacaa aaacatcaaa
     3181 attctcttca ttttgaaaca tcagacccat ctagaaatca gggcaaagct agattacgac
     3241 agccctcgtt gtcctcattg ccaaggaaag tgtatcaagt acgactttca aaagtcgtca
     3301 aagattccga ttttggattg ccagggcttt ccgaccctcc tcttgcttaa aaaacgccgg
     3361 tttcaatgca aatcttgcca aaaagtgact gtaactgaga cagctctagt caagaaaaac
     3421 tgtcagattt cccaacctat ttgggagaaa gtgacacaac tccatacaaa aaacatgacc
     3481 aatatagcca tcgctaggag attacatatc tccgtatcgg tcgtccagag gaaactggct
     3541 cagtttcaat tggagcatga ttttacgaaa ttaccaaaag tcttgagctg ggatgaattt
     3601 agtcggaaca agggaaaact cgcctgtatt gctcagaatt ttgagacgag atcgattgtg
     3661 accattcttg acaacaaccg ccaaaccacc atcaagaact atttctacaa gtatcctagg
     3721 gcggtcagag aaactgtcga ggtcgtaaca gtggacatgt cgggtagcta tattcccatc
     3781 atcaaaaaac tatttccaag agctaaaatt gtccttgata gatttcacat tatccaacac
     3841 atgagccgtg ctatgatgac gactagaatt gatattatga agactttcga tacgcgttcc
     3901 ctaccttatc gatccatgaa aaatcact
//
LOCUS       DASGBY010000148         3868 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.149, whole genome shotgun sequence.
ACCESSION   DASGBY010000148 DASGBY010000000
VERSION     DASGBY010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3868
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.149"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(32..766)
                     /locus_tag="U1396_001811"
     CDS             complement(32..766)
                     /locus_tag="U1396_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-carotene 15,15'-monooxygenase"
                     /protein_id="HEM5342965.1"
                     /translation="MKSYNAYQLKLAMAGLMVLDHLKIIPDFIPDQLALVFHLATRCV
                     AVFFAYMLVEGFLHTRNVKAYLLRLYGAAGLMATGNTLLNSLYQSKGIYISNNIFLTL
                     AVGLTLLICLQNFSEHTRAKQIIQVLLAGLLTIIGALFTEGGTVVLPFILITYLGRES
                     ATKRTIAYGFLALVLLAMSYQPYERLEMTIQMMLYNADWLFILVLPILSLYNGQAGPR
                     TVFSRYFFYIFYPLHLWILATIGYFL"
     gene            complement(779..916)
                     /locus_tag="U1396_001812"
     CDS             complement(779..916)
                     /locus_tag="U1396_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342966.1"
                     /translation="MSFKFLQAKQIFGKSQESKRLEEQDKQAEFLFELEHELFQRNWM
                     Y"
     gene            complement(1055..2221)
                     /locus_tag="U1396_001813"
     CDS             complement(1055..2221)
                     /locus_tag="U1396_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HEM5342967.1"
                     /translation="MNYLVISPFYPENFQPFTIELAKKEGVTVLGIGQEPYDQLPEEL
                     RNALTEYFRVEDLENIDEVKRAAAFLIYKHGPIDRVESHNEYWLENDAALREQFNIFG
                     AKPKHLKKTKFKSEMKKYFKKAGVPVVPGVVVKSERDFGRALKNVGFPMIAKPDNGVG
                     ASGTFKIENKEDFDRFVETWDGATIYFLEKFVNSSIITTYDGLLDHEGNVVFETGLTY
                     VHTPLELMLSRKDNAYFIEKELDPQLVKYGRAIIKAFGMRERFFHIEFFKDGDDYIAI
                     EYNNRMAGGFTVEAYNYAHSIDLFRDYANVATGGTVEERRFEPQYCLVATRRDTTEYV
                     HSADDIHQKFAGKIKTVKRMPDAFAELQGNDAYLLVTESKKELDEMIAYIGLTK"
     gene            complement(2240..2986)
                     /locus_tag="U1396_001814"
     CDS             complement(2240..2986)
                     /locus_tag="U1396_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM5342968.1"
                     /translation="MHVEFLSHWSGNLGREMNLNRYGHAGIPVVVFASSGGSYNEYAD
                     FGMIEACRGSIEAGQVQFFTLTGYDSESWLADWKSIHDKAEAHRAYERYVIEEAIPFI
                     KHKTGWFDGMMTTGCSMGAYHALNFFLQHPDVFTKVIALSGVYDARFFNNNHDYGHDD
                     AVYQNSPSDYIWNQNDGWFIDKYRQADIIVCTGLGDWEQDGLDSFYNLKRAFEEKNIP
                     AWFDTWGTDVAHDWVWWRKQMPFFLHSIGL"
     gene            complement(3017..3844)
                     /locus_tag="U1396_001815"
     CDS             complement(3017..3844)
                     /locus_tag="U1396_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5342969.1"
                     /translation="MNKSYFYLDMRTHELDVPFTGRKRRVRVLLPKGYAENTEETYPV
                     VYFHDGQNVLYSKEAFSGHSWKVIPTIKRNPDIAKMIVVAIDNDGADRMHEYAAWKFS
                     EMGIPGVQFGGKGTLYAEFVMDVVKPFIDKEYRTKSDKVHTAMIGSSLGGNITQFMGL
                     AYQNQIGCLGVFSSANWLHQDAFDRYIERQQLDSEQRVYIYVGTEEADDTDKTLMAGN
                     IKQAYINSSLTYYRQLIAGGVDLDTIALEVVSGAVHNEEAWALYLPACLRFLSEHWS"
BASE COUNT         1150 a          846 c          740 g         1132 t
ORIGIN      
        1 ttctgattaa aaaacttaca agagtgtaag tttagagaaa ataaccaatc gtggccagta
       61 tccacaaatg aagcggatag aagatgtaaa agaaatagcg tgaaaatact gtgcggggcc
      121 ctgcttgtcc attataaaga ctaagaattg gaaggactaa aataaatagc cagtctgcat
      181 tgtagagcat catctgaatg gtcatctcaa gcctttcgta gggctggtag gacatggcta
      241 ataaaactag agccagaaaa ccataggcaa tggttcgctt agtagcagac tcacgaccca
      301 aataggtgat gaggatgaat ggcaagacca ccgtgccccc ttctgtgaac aaggcaccta
      361 tgattgtcaa taaccctgcc agcaggacct gaatgatttg cttcgctctc gtgtgctcac
      421 taaaattttg aagacaaatc agcagagtta ggccgactgc taaggtcaaa aagatattat
      481 tgctaatgta aatcccttta gactggtaga gactgtttag caaagtattt ccagtggcca
      541 ttagtcctgc tgcaccatac agtcgtaaca gataggcttt gacatttctc gtatgaagaa
      601 acccttccac caacatgtag gcaaagaaaa ccgcgacgca ccgtgttgct aaatgaaaca
      661 ctaaagcgag ttgatcaggg ataaaatcag gtatgatttt cagatgatcc aaaaccatca
      721 agcctgccat agcgagtttc agttgataag cattatatga tttcaccagt caaacctcct
      781 agtacatcca gttgcgttgg aacagttcgt gttctagctc gaatagaaat tcagcttgtt
      841 tgtcttgttc ttctagtcgt ttgctttctt gtgatttacc aaaaatttgt tttgcttgta
      901 gaaatttgaa tgacatctga tttccttctt tctatttctt atgagtctat tatagaaaat
      961 atgtcgctca tgttctctta caattctgaa ctaaaaactt acaggtttgt aagaaaagaa
     1021 aaaagacacc attttaggca tctttcaatt cattctattt tgttaaacca atgtaggcaa
     1081 tcatttcatc caactctttc ttgctttccg ttacaagtag ataggcatca tttccctgaa
     1141 gttccgcaaa ggcatctggc atgcgtttga cggttttaat cttaccagcg aatttctgat
     1201 gaatgtcatc tgctgagtga acatattcgg tcgtatcacg gcgagttgcg accaagcagt
     1261 attgtggttc aaatctacgt tcctcaactg taccacctgt tgcgacattg gcataatcac
     1321 ggaaaagatc aatggaatgg gcgtagttat aggcttcaac agtaaagcca cccgccatgc
     1381 ggttgttgta ttcaatggca atgtagtcgt ccccatcctt gaaaaattca atatggaaaa
     1441 aacgctctct cataccaaag gccttgataa tcgcgcgacc atattttact aattgaggat
     1501 ccaactcctt ctcaatgaag taggcattgt cttttctaga caacatcagt tccagcggag
     1561 tatgaacata agtcaaacct gtttcaaaga caacattgcc ttcgtggtcc aacaaaccat
     1621 cataggttgt gataatgctt gagttgacaa atttttcgag gaaataaata gttgctccat
     1681 cccatgtctc cacaaaccga tcaaaatctt ctttattttc gattttaaag gtaccggatg
     1741 ccccaacacc gttgtctggt ttagcaatca ttgggaaacc aacattcttc aaagctctgc
     1801 caaaatcacg ttccgattta acaaccacac ctggaacgac tggaacacct gcttttttga
     1861 aatatttttt catttcagac ttaaatttag tctttttcag gtgtttgggt ttggctccaa
     1921 aaatgttgaa ttgttcacgg agggctgcat cgttttcaag ccaatattca ttgtgggatt
     1981 ctacacggtc aattggacca tgcttgtaaa taagaaaggc cgctgcacgc ttgacttcat
     2041 cgatattttc caaatcttcc acacgaaagt attctgtaag agcgttacga agttcttcag
     2101 gcaattgatc gtaaggttct tgcccaatac ctagaaccgt aacgccttct tttttagcca
     2161 attcaatggt gaacggttga aaattttctg gataaaaagg tgaaataacg agataattca
     2221 taggtagtcc tttctaatct taaagtccga tagaatgaag gaagaatggc atttgctttc
     2281 tccaccacac ccagtcgtgg gccacatctg ttccccaagt atcaaaccaa gctgggatat
     2341 tcttctcttc aaaggcacgt tttaggttgt agaatgaatc cagaccgtct tgctcccaat
     2401 cgcccaaacc tgtgcagacg ataatatctg cttgacggta tttgtcaata aaccaaccat
     2461 cattctggtt ccagatgtaa tcagacggtg agttttgata gaccgcatca tcatgaccat
     2521 aatcatggtt gttgttgaag aatcgagcat catagacacc tgaaagtgca ataactttcg
     2581 tgaagacatc tggatgctgg aggaagaaat tgagcgcgtg gtaggccccc attgagcaac
     2641 cagttgtcat cataccatcg aaccagccag ttttatgttt gataaaggga atcgcttctt
     2701 caatcacata ccgttcatag gcgcggtgag cctctgcctt atcatgaatg gatttccagt
     2761 ctgccaacca gctttcacta tcgtagccag ttagagtaaa aaattggacc tgaccagctt
     2821 caatagatcc acgacaagct tcaatcatac caaaatcagc atattcattg taagaaccac
     2881 ctgatgaagc aaatacgaca acaggaatcc ctgcgtgacc ataacgattt agattcattt
     2941 ctcggccaag atttccagac caatgactta aaaattcaac gtgcatagta aagcctccta
     3001 tttgtatatt tttgttttat gaccaatgtt cgcttaggaa tcgtaggcaa gctggcaaat
     3061 agagcgccca agcctcttca ttatggaccg cacccgaaac gacttccaag gcgatagtgt
     3121 ccaaatccac tccgccagcg atcaattgac gatagtaagt caatgaagaa ttgatatagg
     3181 cctgcttgat atttcctgcc atcaatgttt tatctgtatc atctgcttct tctgtcccaa
     3241 cgtagatgta gactcgttgc tctgagtcta attgttgacg ttcaatataa cggtcgaaag
     3301 catcttgatg aagccaattg gccgatgaaa agacacccag acagccaatc tggttctgat
     3361 aagccaagcc cataaattgt gtgatattgc ctcccaagga tgagccaatc attgcagtgt
     3421 gaactttatc agattttgtc cggtattctt tatcgataaa gggtttgacg acatccatca
     3481 caaattcagc atacaaggtt cccttaccac cgaactgcac cccaggaatc cccatctcac
     3541 taaacttcca agcagcgtat tcatgcatgc gatcagcacc atcgttatca atagctacta
     3601 cgatcatttt tgcaatgtct ggattacgct taatagttgg gatgactttc catgaatgac
     3661 ctgaaaaagc ttccttactg tagagtacat tttgcccatc gtggaaataa acaacgggat
     3721 aggtctcttc tgtattttca gcatatcctt tcggcaataa aacacggact cgacgttttc
     3781 ttcctgtaaa tggtacatct aattcatgag ttctcatgtc caaataaaag taagacttat
     3841 tcatatctat ctcttcctta tgtatttt
//
LOCUS       DASGBY010000149         3765 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.150, whole genome shotgun sequence.
ACCESSION   DASGBY010000149 DASGBY010000000
VERSION     DASGBY010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.150"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(21..251)
                     /locus_tag="U1396_001816"
     CDS             complement(21..251)
                     /locus_tag="U1396_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005592360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1797 family protein"
                     /protein_id="HEM5342970.1"
                     /translation="MESHLVRIINRLEAMANDGGTLKRNFERDGIVVAEVAYSYDEEN
                     GSVFTLRDVAARETYAFDSIDLIAMEIYELLY"
     gene            475..2703
                     /locus_tag="U1396_001817"
     CDS             475..2703
                     /locus_tag="U1396_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5342971.1"
                     /translation="MLCKNCNINDATIHLYTNLNGKQQQVDLCHNCYQIMKTDPNNAI
                     LRGLGDLTNPNNMDPFSEFFNHLGGYPGNTPAGKNREQTPPTQAGEHNGRGGQTPPPQ
                     QPQQPNGLLEEFGINVTEIARRGDIDPVIGRDQEITRVIEILNRRTKNNPVLIGEPGV
                     GKTAVVEGLAQKIVAGDVPQKLRDKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRN
                     RREIILFIDEIHEIVGAGSAGDGNMDAGNILKPALARGEMQLVGATTLNEYRIIEKDA
                     ALERRMQPVKVEEPSVEETITILKGIQNKYQDYHHVKYSDAAIEAAAVLSNRYIQDRF
                     LPDKAIDLLDEAGSKMNLTLNFIDPKEIDQRLIDAENRKAQATRDEDYEKAAYFRDQI
                     AKYKEMQKATISEEDIPLITEKEIEAIVEQKTNIPVGDLKEKEQSQLVNLASDLKAHV
                     IGQDEAVDKIAKAIRRNRVGLGAPNRPIGSFLFVGPTGVGKTELSKQLAIKLFGSADS
                     MIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPDV
                     MHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAMEGRTQSVLG
                     QLSNFFTPEFMNRFDGIIEFQPLSKENLLEIVSLMLDDVNKRLSHNGISLHVTDKVKE
                     KLVDLGYDPKMGARPLRRTIQDQIEDAITDFYLEHPAEKDLRAVMSSKGTIQIKAQTK
                     TK"
     gene            2889..3350
                     /locus_tag="U1396_001818"
     CDS             2889..3350
                     /locus_tag="U1396_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5342972.1"
                     /translation="MEKIAVFGEKKAGVSYQSRFGVYAVIPDEKKEQIILVQAPNGAW
                     FLPGGEIEKGENHLIALERELMEELGFTAEIGKYFGQADEYFYSSHRDTHFYNPAYIY
                     EVTSYHQIGQPLEDFNHIAWFPVNEAIDKLKRGSHKWGIEQWKLQENSFNN"
     gene            3405..3713
                     /locus_tag="U1396_001819"
     CDS             3405..3713
                     /locus_tag="U1396_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1827 family protein"
                     /protein_id="HEM5342973.1"
                     /translation="MKIINTTNSHPNLVQSQLANTDAFLVETYSAGNTDVIFTQAPRH
                     YELLISNKYRAVQQNEIEQIRDFFLHRKIDERTINKAAIQTIHTDRLIEMSILIIAEV
                     "
BASE COUNT         1212 a          848 c          731 g          974 t
ORIGIN      
        1 taggtgcctc tcacttcttc ttagtacaat agctcataga tttccattgc aatcaagtcg
       61 atgctgtcaa acgcgtacgt ttcacgagca gcaacatcac gcaaggtaaa tactgaaccg
      121 ttttcctcgt catagctata agccacttct gcaacaacaa taccatcacg ttcgaaatta
      181 cgtttcaacg taccgccgtc attagccata gcttccagac gattgataat tctcaccaaa
      241 tgtgattcca tattcgttct cctaatcctt tttataggaa tattttacca catattgcca
      301 aaaaagtctt attttttccc tattttcttc ctatcgccct atttttcata gaaagttttt
      361 ccaagcgtag cagtttcttg atttttctat gaatcttgtt ataataaagc tagaactgac
      421 cttttttgac tatttaacaa taggtcacat tttttcacag aaagaggtag aattatgctc
      481 tgcaaaaatt gtaatatcaa cgacgcaacg atccatctct acaccaactt aaacggtaaa
      541 cagcagcagg tagacctctg tcacaactgc taccaaatca tgaaaacaga ccctaataat
      601 gccatcctac gtgggttggg agatttaaca aatcctaaca acatggatcc ctttagtgaa
      661 tttttcaatc acctaggtgg ctatcctggc aatacccctg ctggaaaaaa tcgcgaacag
      721 actcctccta ctcaagccgg tgagcataat ggacgtggtg gacagacccc tcctccgcaa
      781 caaccccaac aaccaaatgg gctccttgaa gaatttggta tcaacgttac cgaaattgcc
      841 cgtcgtgggg atattgatcc agtaatcggt cgcgatcaag aaattacccg tgtcatcgaa
      901 attctcaacc gtcgtacaaa aaacaaccct gttcttatcg gtgagcctgg tgtaggtaaa
      961 acagcggttg ttgaaggctt ggctcaaaaa attgtcgctg gcgatgtccc acagaaatta
     1021 cgagacaagg aagtcattcg tctggatgtt gtcagcctcg tacaaggaac aggtatccgt
     1081 ggacaatttg aagaacgcat gcaaaaactc atggaagaaa tccgtaatcg tcgcgaaatc
     1141 attcttttta ttgacgagat tcacgaaatt gtcggtgctg gctctgcagg cgatggtaac
     1201 atggatgcag gcaatatcct caaaccagcc ctcgcacgtg gtgaaatgca actagtcggt
     1261 gcaacaacgc tcaacgagta ccgtattatc gaaaaagatg ccgccctaga acgccgtatg
     1321 caacctgtaa aagttgaaga accaagtgtc gaagaaacca ttaccattct caaaggtatc
     1381 caaaataaat accaggatta ccatcatgtt aaatactccg atgctgctat cgaagctgcc
     1441 gcagtactgt ccaaccgcta cattcaagac cgtttcctac cagacaaagc tattgacctt
     1501 ctggatgaag ctggttcaaa aatgaattta accctcaact ttattgatcc aaaggaaatt
     1561 gaccaacgcc tgattgatgc cgaaaatcgg aaagcacaag ctacacggga tgaggactat
     1621 gaaaaagcgg cctatttccg tgaccaaatt gctaagtaca aggagatgca aaaggcaact
     1681 atcagcgagg aagatattcc actcattact gaaaaagaaa ttgaggccat cgttgagcaa
     1741 aaaacaaata tcccagttgg tgatttaaaa gaaaaggaac agtcccagct tgtgaacctc
     1801 gctagtgact taaaagccca tgttatcgga caagatgaag cagttgacaa gatagctaaa
     1861 gccatccgcc gtaatcgtgt cggtctcggt gctccaaatc gtcccattgg atccttcctc
     1921 tttgtcggac caacaggtgt cggtaaaacc gaattgtcta aacaattagc tatcaaactc
     1981 ttcggttcgg cagacagcat gatccgcttc gacatgtccg aatacatgga aaaacacgct
     2041 gtcgctaaac tcgtcggagc tcctccaggc tatgtaggct atgaggaggc tggacaattg
     2101 acagaaaaag tccgtcgtaa tccttactca ctcatcctcc ttgacgaagt tgaaaaagcc
     2161 cacccagatg tcatgcacat gttccttcag gtcttagacg atggtcgtct gacagatgga
     2221 caaggtcgga cagtcagctt caaagatact attatcatca tgacatcaaa tgctggtact
     2281 ggaaaagttg aagcaagtgt cggttttggt gcggctatgg aagggcggac tcaatcagtc
     2341 cttggccaac ttagcaattt cttcacacct gaatttatga accgatttga cggtattatt
     2401 gagttccaac cactgagcaa ggaaaaccta cttgaaatcg tcagcctcat gctagacgat
     2461 gtaaacaaac gcctttctca caatggcatc agcctccatg taacagataa agttaaggag
     2521 aaattagtgg accttggcta cgatccaaag atgggagctc gtccactgcg cagaaccatc
     2581 caagatcaga ttgaagatgc tatcaccgac ttctacttag aacatccagc agaaaaagac
     2641 ctacgtgctg tcatgtcaag taaaggtaca attcaaatca aggcacaaac aaagacaaaa
     2701 taagaaaata gagctgctcc ctacgagtag cctattttac tgttttgcta ctctattttt
     2761 ctaaattctt ccccatctcc atcctataaa aaaactttac tttgtaaagc ctatcacaag
     2821 gaaaaataat aaaaaagtgg tataatgtat acaactcatt ccaataatga aagaggatag
     2881 aattgcctat ggagaaaatt gctgtatttg gagaaaagaa ggctggcgtc agctaccaga
     2941 gtcgctttgg tgtttacgca gttatcccag atgaaaaaaa agaacagatt atactcgttc
     3001 aagcaccaaa cggagcttgg tttcttcctg gtggagaaat tgaaaaggga gaaaatcacc
     3061 ttattgcttt ggagcgcgaa ttgatggaag agcttggatt caccgctgaa atcggaaaat
     3121 actttggtca ggctgacgaa tacttctact ctagccaccg cgatacccat ttctataatc
     3181 cagcctacat ctatgaagtg actagctacc atcaaatagg acaaccacta gaagatttca
     3241 accatattgc ttggttccca gtcaatgaag ccatcgataa actcaaacgt ggtagtcaca
     3301 aatggggcat tgaacaatgg aaattgcaag aaaattcatt caataactag taaaaacact
     3361 ctaatcgtgc tataatgtag ccaaagagat agaggaggtt ccacatgaaa atcattaaca
     3421 cgacaaatag tcatcccaat cttgtccaaa gccagttggc taatactgat gctttcctag
     3481 tagagactta ttctgcaggt aatacagacg ttattttcac acaggcaccc cgtcattatg
     3541 aactcttgat tagtaataaa taccgtgcag tacaacaaaa tgaaatcgag caaattcgtg
     3601 atttcttcct tcatcggaaa attgatgaac gaactattaa caaggctgcc attcaaacga
     3661 ttcacacaga ccgtttgatt gaaatgtcta ttctcattat cgcagaagtg taagaagcca
     3721 gatggcttct ttcagattga agaaaaagtc cattttggac aattt
//
LOCUS       DASGBY010000150         3649 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.151, whole genome shotgun sequence.
ACCESSION   DASGBY010000150 DASGBY010000000
VERSION     DASGBY010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.151"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(21..1475)
                     /locus_tag="U1396_001820"
     CDS             complement(21..1475)
                     /locus_tag="U1396_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342974.1"
                     /translation="MGEKNSHHLPLDEEKVLDFEVAKDLTIEEAVKKHKEIEAGVTED
                     DGLLDRYIKQHRAEIESQKFETKINHLPLVEVADEEKNQGHESAEEVEANESSLTEVS
                     EEIAPIVEELSVAPMETLEETVIASTVAMEGLSSVADDSSLELEEDEAEDLDHSEGAD
                     RDQKKKFYFWSAVGLSMIGVMVTALIWMNSVNKSNTATSSSSTSTSQTSSTASSSTDA
                     NVTALEQLYNSFFTDSSLTKLKNSEFGKLAELKVLLEKLDKNSDSYIKAKEQYDHLEK
                     AIAAIQAINGQFDKEVVVNGEIDTTATVKSGESLSATTTGISAVDSLLASVVNFGRSQ
                     QEVASATVASEAAVTSSQGADETVSTGVPATTEVASTTVSGSTTDFGIAVPAGVVLQR
                     DRSRVPYNQAMIDDVNNEAWNFNPGILENIVTISQQRGYITGNQYILEKVNIINGNGY
                     YNMFKPDGTYLFSINCKTGYFVGNGAGHSDALDY"
     gene            complement(1485..2651)
                     /locus_tag="U1396_001821"
     CDS             complement(1485..2651)
                     /locus_tag="U1396_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEM5342975.1"
                     /translation="MKKQFELIATAAAGLEAVVGREIRNLGYECQVENGRVRFQGDVK
                     SIIETNIWLRSADRIKIIVGQFPAKTFEELFQGVFNLDWENYLPLGCKFPISKAKCVK
                     SKLHNEPSVQAISKKAVVKKLQKHFSRPEGVPLQEMGAEFKIEVSILKDVATVMIDTT
                     GSSLFKRGYRVEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKN
                     IAPGLKRSFAFEEWPWVEDQLVAALRKEAQASIKTDLVLDIAGSDIDARMIEIAKKNA
                     FAAGVEQDIVFKQMRVQDLRSDKINGVIISNPPYGERLLDDEAIVTLYREMGQTFEPL
                     KTWSKFILTSDELFETRFGQQADKKRKLYNGTLKVDLYQFFGQRVKHQVQEVQG"
     gene            complement(2705..3069)
                     /gene="rnpB"
                     /locus_tag="U1396_001822"
     ncRNA           complement(2705..3069)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="U1396_001822"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            complement(3208..3543)
                     /gene="gpsB"
                     /locus_tag="U1396_001823"
     CDS             complement(3208..3543)
                     /gene="gpsB"
                     /locus_tag="U1396_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HEM5342976.1"
                     /translation="MASIKFTTKDIFEQDFKIGFRGYDQDEVNDFLDDIMKDYDAYEA
                     IIKELKGEIARLKAQAANSPKTTLPTEESNDVLRTERPSSATNFDILRRLNRLEKEVF
                     GKQIVQDQE"
BASE COUNT         1016 a          879 c          596 g         1158 t
ORIGIN      
        1 cggctaaaac gcttttttgc ttaataatcc aaggcatcag aatgaccagc accattgccg
       61 acaaagtagc ctgtcttaca atttatagag aacaagtagg tcccatctgg tttaaacata
      121 ttgtagtagc cattgccgtt gataatatta actttttcca agatatattg attgcctgtt
      181 atatacccac gttgttgcga gatagtcaca atattttcaa gaatacctgg attgaaattc
      241 catgcttcat tgtttacatc atcaatcatt gcttgattat aaggaacacg actgcggtca
      301 cgttgcaaga cgacaccagc tggcacggca ataccaaagt cggttgttga gcctgaaacc
      361 gttgttgaag cgacttctgt tgtcgctggt acaccagtag atacagtttc atcagcacct
      421 tggctgcttg tgactgcagc ctcacttgct accgtagccg aagcgacttc ctgttgtgaa
      481 cgaccaaaat tcacgaccga tgccaataga ctgtcaaccg cactaatccc tgtcgttgtc
      541 gcagaaagag attctcctga tttaaccgtc gccgttgtat caatttcacc attaacaacg
      601 acttctttat caaactgacc attaatggcc tgaatggctg caatggcttt ttcaagatga
      661 tcatactgtt ctttagcttt gatataactg tccgaattct tatccaattt ttccaacagc
      721 actttcagtt ctgctaattt accaaactct gaatttttta gcttggtcaa actactatcc
      781 gtaaagaaac tattatagag ctgttctaaa gcggtcacat tcgcatctgt cgaacttgat
      841 gctgtcgatg acgtctggct tgtacttgtt gaacttgaag aagtcgcagt attcgatttg
      901 ttaaccgaat tcatccaaat cagcgccgtc accattacac caatcattga aagccctact
      961 gctgaccaga agtaaaattt ctttttctgg tccctatctg cgccctcact atggtccaag
     1021 tcttcggctt catcttcttc caattctaaa ctagaatcat ctgccactga agataacccc
     1081 tccattgcta cagtacttgc aatcactgtt tcttccaagg tttccatcgg agctaccgaa
     1141 agttcttcta caataggagc aatctcctca ctaacttccg taagagaaga ctcatttgct
     1201 tctacctctt ccgcgctttc atgtccttga tttttttcct catcagccac ctcaactaaa
     1261 ggaagatgat tgattttggt ttcaaatttt tgagattcaa tttctgcacg gtgttgcttg
     1321 atgtaacgat ccaagagacc atcatcttct gtcacacccg cttcaatttc cttatgtttt
     1381 ttgactgctt cttcgattgt taaatctttc gccacttcaa aatctaaaac tttctcctca
     1441 tccaaaggaa gatgatgact atttttttct cccacgatgt cctcctatcc ttgcacttct
     1501 tgcacttgat gtttcactcg ttgaccaaaa aattgataaa gatccacttt tagggtacca
     1561 ttatacagtt tgcgtttctt atccgcttgc tgtccaaaac gggtttcaaa caactcatca
     1621 ctagttagaa taaacttaga ccatgttttg agtggttcaa aagtctgccc catttctcga
     1681 taaagggtaa caatggcttc atcatccaac aaacgttctc cgtaaggtgg attagaaatg
     1741 atgacaccat taattttatc tgaacgcaag tcttgcacac gcatttgctt gaaaacaata
     1801 tcctgctcaa ctcctgccgc aaatgcattc ttcttcgcaa tttcaatcat acgagcatca
     1861 atatctgatc cagcaatatc taataccaaa tctgttttga tagaagcttg cgcttctttg
     1921 cgtaatgcag ccaccaattg atcctcaacc cacggccatt cctcaaatgc aaaacttctc
     1981 ttcaaacctg gagctatatt ttttgccaac atagctgcct caatacagaa agttcccgat
     2041 ccgcaagtag ggtcaataag cggtttatct ggataccaat tcgataattg caaaatagca
     2101 gccgccatat tttctttgat tggtgcgcca cctttttcca cccgataacc acgtttgaac
     2161 aaactagaac ctgtcgtatc aatcatgact gtcgccacat ctttcaaaat cgacacttca
     2221 attttaaact ctgcccccat ctcttgcaag ggaacccctt cgggacgaga gaagtgtttc
     2281 tgcagtttct ttacaactgc tttcttagaa atagcctgca cacttggttc attatgcaat
     2341 ttcgatttga cacatttggc cttggaaatg gggaacttgc agcctagagg caagtaattt
     2401 tcccaatcca agttaaaaac tccttggaac aactcttcaa aagtctttgc tggaaattgt
     2461 ccaacaatga ttttaattct atctgctgaa cgcagccaga tattggtttc gataatggat
     2521 tttacatctc cttggaatct aacacggcca ttttccactt ggcattcata gccgagatta
     2581 cgaatttctc gacccacaac cgcttccaga ccagctgctg ccgttgcaat caactcaaat
     2641 tgttttttca tttttttcct ctacaataaa agctagcaga gctagctacc tattttatgc
     2701 aattttctgt aagccatgtt ttgttccagt ggtactaggt tctaccacct tcgataatca
     2761 tctgtctact gtctaaacag tcaggatttc tgttcatttc catccatccc atgccccgac
     2821 caaagtttgg gttgctagct tgaggggttt accgcgttcc attttttacg tttccataaa
     2881 aacttcgtca ctgtggcact ttcagatcta ctctgacata tcaaaagact tagccatttt
     2941 aaccgccgta acgcccaagg gcgtccctag gcttattgat tcgcctagca caaacactac
     3001 tggcatctca gccagtgcta gcatggactt tcctcatggt agaaaactac cacgcgatta
     3061 tccaaaaatt gcaccttaat tatcttagaa gttgtatcta caaagcaagc cactttaaat
     3121 caaggaatat ctctgacaca aatacagaat gtatttgtgc acaagaaaat aactgcaaat
     3181 aaagtgtcag tttaggtgta caattttcta ttcttgatcc tgaacgattt gttttccaaa
     3241 tacttctttc tccagacgat tcagacggcg gagaatatca aagtttgtcg ctgaagatgg
     3301 acgttctgta cgcaatacat cgttcgattc ttcagtagga agagttgttt tgggggaatt
     3361 tgctgcctgc gctttcaatc gagcaatttc gccttttaat tccttgataa tcgcttcata
     3421 agcatcatag tctttcataa tatcatcaag aaaatcgttc acttcatctt gatcatagcc
     3481 acgaaaacca attttaaaat cttgctcgaa aatatctttt gtcgtaaatt taatacttgc
     3541 cacctctctc cctaatctaa aacgtcacta ctcctattat attaaaaaaa cagggaaaaa
     3601 tcaagtcaaa tcactcagaa tttgaaaaat tttcagcctc ctcattcaa
//
LOCUS       DASGBY010000151         3647 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.152, whole genome shotgun sequence.
ACCESSION   DASGBY010000151 DASGBY010000000
VERSION     DASGBY010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.152"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(100..1680)
                     /locus_tag="U1396_001824"
     CDS             complement(100..1680)
                     /locus_tag="U1396_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000673092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5342977.1"
                     /translation="MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQ
                     AQTGTGKTAAFGLPTLNKIDTNNQAIQALIIAPTRELAVQSQEELFKFGREKGVKVRS
                     VYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGF
                     LDDIEAIIERVPESRQTLLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYY
                     LRVKEHEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQN
                     KRLRVIRDFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG
                     QSGQSITFVSPNEMGYLAIIEDLTKKRMKGLKPATAQEAFEAKKKVALKKIEREMADE
                     TIRSNFDKFKKDAIQLAAEFTPEELALYVLTLTVQDPESLPEVEIAREKPLPFKFAPG
                     QAKGKGGRGGRDRDRGGRRDGDRNRDRGGRRGDRNDRNRRDDKFKRDNRRQDNKKPHQ
                     RTSSEKKTGFVIRNKGER"
     gene            complement(2114..2707)
                     /locus_tag="U1396_001825"
     CDS             complement(2114..2707)
                     /locus_tag="U1396_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5342978.1"
                     /translation="MTQIKWRDCLLICFGAILYALVLNMLIIPHEFGEGGITGVTLLL
                     FYTTGIETSLSSFVLNGILIVLAYRFLSKLTVFYTFLAVATMSLTMHYTTFLQIKWLP
                     LIPSALLAGLVTGLSMALVIYGNGSTAGSDIIALLCNKYFKWKISTVILIFDVFVVTP
                     LAFKIGLVKTFWTLVMVVIISKSLDWFLQALKKNNHK"
     gene            complement(2785..3168)
                     /locus_tag="U1396_001826"
     CDS             complement(2785..3168)
                     /locus_tag="U1396_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM5342979.1"
                     /translation="MGLFSGLLGNASQMDNDKIEQELEHVLLDNEQVEMAFSLVRDLI
                     VFTEYRLILVDKQGMTGKKVSYKSIPYRSISRFTVETSGHFDLDAELKIWISSAVEPA
                     EILQFKSDKSVIAIQKALASAVLGK"
     gene            complement(3256..>3647)
                     /locus_tag="U1396_001827"
     CDS             complement(3256..>3647)
                     /locus_tag="U1396_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="histidine triad protein"
                     /protein_id="HEM5342980.1"
                     /translation="QGIEENEKLVNLDVEGNQIKTLEIEGKQESVVRLNVADNQLKNL
                     EGINDYKALEDLNASKNDIETLAITEPNKTLKTIDVSENHIPKEELNLNDQKIPSAIA
                     EHFPAVEGGSIENNQPKEVDKEAKVGE"
BASE COUNT         1043 a          826 c          640 g         1138 t
ORIGIN      
        1 ttatactctg tttttattgt ttgtcaagaa ctatttcgat tattttctaa atagatttca
       61 aaaaaaacag accactcttt atggtctgtc aaatccggct tatctctccc ctttattgcg
      121 gataacaaag cctgttttct tttcacttga tgtgcgttgg tgtggttttt tgttgtcctg
      181 acggcggttg tcgcgtttaa acttgtcatc gcgacggttg cggtcattac gatcaccacg
      241 gcgtcctccg cggtctcggt tgcggtctcc atcacgacga ccaccgcgat cacggtcgcg
      301 accaccacgt ccacccttgc ccttggcttg accaggtgca aacttgaatg gcagtggttt
      361 ttctcgcgca atttctacct ctggcagact ttctggatcc tgaacagtca aggtcaatac
      421 ataaagcgct aactcttcag gggtaaattc agccgctaac tgaatagcat ctttcttgaa
      481 cttatcaaaa ttgctacgga tggtttcatc cgccatttca cgctcaatct tcttcaaagc
      541 aactttcttc ttggcttcaa atgcttcctg agcagttgct ggcttgagac ctttcatgcg
      601 tttcttggtc aaatcttcga tgatggccaa gtagcccatc tcgtttggcg aaacaaaggt
      661 aatagactga cctgattgac ccgcacgacc tgtacgaccg atacggtgca catagctttc
      721 agggtcctgt ggaatatcgt agttatagac atgcgttaca cctgagatgt ccaaaccacg
      781 ggccgcaacg tctgtcgcaa ctaagacatc aatttgatca tttttaaaat cacgaatgac
      841 acgaagacgc ttgttctggt ccaaatctcc gtgaatacct tctgcacgga aaccacgcaa
      901 tttcaaacca cgagtcaatt catcgacacg gcgtttggta cgaccaaaga caatagacaa
      961 ttctggctgg tcaacatcca taagacgagt catggtgtcg aatttttcat gttctttgac
     1021 acgaagataa tattggtcaa cattgacatt agtcaattcc tttgctgcaa tcttaacgtg
     1081 ctcaggttct ttcatgaact tgacaccaat acgcttgatt ggctctggca tggttgcaga
     1141 aaacagaagg gtttgacggc tctctggtac acgttcgatg atcgcttcaa tatcatccaa
     1201 gaagcccatg ttgagcattt catctgcctc gtcaagaatg agagtttcaa caccgtcaag
     1261 tttgagggcc ttgcgtttga tcaagtccaa gaggcgacct ggtgtaccaa caacgatgtg
     1321 agcacctgaa cgaagggcct tgatttgctt ttcaatgctt gagccaccgt aaacagagcg
     1381 gactttcaca cccttttcac gaccaaattt gaaaagttct tcttgactct gcaccgccaa
     1441 ctcacgtgtt ggggcgataa tcaaggcctg aattgcttga ttgtttgtgt caattttgtt
     1501 gagggttggc aaaccaaagg ctgcagtttt ccctgtcccc gtctgggctt gaccaatcac
     1561 atctttacct tcaagagcaa gcggaatggt ctgctcctgg attggtgacg gcgtttcaaa
     1621 accagccttc tcaacggcaa gcaaaatatc ttctgataat tgtaaatctg taaatttcaa
     1681 tgtattctct tttctaaaag gcagtgcgaa gctaccttat ctaacttttt tgtaacaaga
     1741 tatcagggtc gaaccactga tattggattt gcaacttacc aagtataaca caatctaaca
     1801 ataatagtta atatttacct ttaaaaagtc aataatacgt tttcatgagg agtccatcat
     1861 ttttatagac atttgaatta actttgatac atcgatactt tcggtttgcc ctactctagt
     1921 accagctcct tgtctgaaag ttatactctt cgaaaatcaa aatcagacgt tgttgacttg
     1981 atctgatgaa cttcagttct atctgcatct gcgtcgctta gtctgttttt gattttcatt
     2041 gagtattaat tcattcgact ataagaaaag agaaaactag ttatacatgc acaactgggt
     2101 ttctcttgta tttttattta tgattattct ttttcaatgc ttgcaagaac cagtccaaac
     2161 ttttactgat aatgacaacc attaccaatg tccaaaatgt ttttacaagc ccaattttaa
     2221 aagccaaagg agttaccaca aatacatcaa aaatgagaat aacggtggaa atcttccatt
     2281 tgaaatattt attacacaac aatgcaataa tatcacttcc tgccgtggac ccgtttccat
     2341 aaatgactag agccattgat aaacctgtca ccaatcccgc caaaagagca gaaggaatca
     2401 ggggcaacca ttttatttgc agaaaagtcg tataatgcat ggttaaggac atagtagcaa
     2461 ccgctaagaa agtatagaaa accgttaact tactcaaaaa gcgataggct aatacaatca
     2521 aaatcccatt caaaacaaaa ctggacagac ttgtttcaat ccctgtcgta taaaacaaaa
     2581 gtagggtaac accagtaatc ccaccttcgc caaattcatg tggaatgatg agcatattca
     2641 aaacaagggc atataggatt gccccaaaac atatcaataa gcagtctctc cattttatct
     2701 gcgtcatatt ctctcctcac aaacagtcca ccttagtata tcaaaaaaag cagaaagcgg
     2761 atagccactt tctgtacttt tttcctattt tcctaagaca gctgaagcca gtgctttttg
     2821 aatggcaatg acactcttat cgctcttaaa ctgaagaatt tcagcaggtt caacagccga
     2881 tgaaatccat attttcagct cagcatctaa gtcaaaatga ccagaggttt ctaccgtaaa
     2941 acgtgaaatc gagcggtaag gaatcgattt ataagatacc tttttcccag tcattccttg
     3001 cttatcgacc aaaatcaatc gatattctgt aaaaacaatc agatcacgaa ccagactaaa
     3061 tgccatctca acctgttcat tatccagtag aacatgctcc aattcctgtt caatcttatc
     3121 attatccatt tgcgaggcat tacctagtaa acctgaaaat agtcccataa tatgactcct
     3181 ttggtatttt tctatagtat aacacaaaaa gctactagtt gactatctta ggtaggtctt
     3241 taccaaacat gagaattact cgcctacctt tgcttcctta tcaacttctt taggttgatt
     3301 gttctcgata ctgccacctt caactgctgg aaaatgttct gcaatcgcag atgggatctt
     3361 ctgatcattt agatttaatt cttccttcgg aatgtgattt tcactcacat caattgtttt
     3421 caaagtctta tttggctccg tgatggcaag tgtttcaata tcattttttg aagcattcag
     3481 gtcttctaag gctttgtaat cattgattcc ttctaaattc ttcaattgat tatctgcaac
     3541 atttaatcga acaaccgatt cttgtttacc ctctatttcc aaagtcttaa tttgattccc
     3601 ctctacatcc agatttacta atttttcatt ttcttctatc ccttgta
//
LOCUS       DASGBY010000152         3564 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.153, whole genome shotgun sequence.
ACCESSION   DASGBY010000152 DASGBY010000000
VERSION     DASGBY010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.153"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            24..398
                     /locus_tag="U1396_001828"
     CDS             24..398
                     /locus_tag="U1396_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5342981.1"
                     /translation="MAWKFDNNIPIYIQISNTIKLQIVTNQLKSGDKLPTVRDLADIA
                     GVNPNTVQRALSDLETEGFVYSVRTTGRFVTDNQELITQTRLHLAQKELENFVNNMLE
                     LGFRHDELTSQLDDYLKGVTYE"
     gene            391..1098
                     /locus_tag="U1396_001829"
     CDS             391..1098
                     /locus_tag="U1396_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5342982.1"
                     /translation="MSNAYTLVELQQVSKSYGGAVALNNVNLKLTAGKIIGLLGPNGS
                     GKTTMIKLINGLLQPEYGQVLINGRTPSPETKAIVSYLPDTTYLDEHMKVLEAITFFE
                     DFYADFDKERALHLLQDLGIDLNSRMKHLSKGNKEKVQLILVMSRQAQLYVLDEPIGG
                     VDPAARDYILKTIVNNYSPTASVIISTHLISDVEQILDEVIFLHYGSVIRHGNVDDLR
                     IESGESIDELFRQDFKA"
     gene            1115..1897
                     /locus_tag="U1396_001830"
     CDS             1115..1897
                     /locus_tag="U1396_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5342983.1"
                     /translation="MFKKLLKYEFQSVGKWYLGIYIAAVVLSAVLGFWLQALALRTQA
                     GNTEPGGGEMVLLGTSFMTFGILIAALFLSTFVLVINRFRKNVYGRQGYLTMTLPVSS
                     YQIILSKLLASIVWYILAGITCLLSIGIILAVILAASEEAIMPEIQTFVQAIDWTVLF
                     SQIFYYLIEITTGILLIYFSISVGQLFKDHRFLFAILTYIGILIVTGVFSTFFVLSNL
                     GTAYSTPFSLYPSPVLALVNIILAFAYYFGTHFIMTKKLNLQ"
     gene            complement(1941..2942)
                     /locus_tag="U1396_001831"
     CDS             complement(1941..2942)
                     /locus_tag="U1396_001831"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEM5342984.1"
                     /translation="MLNVNELVKTELHCHLDGSLSLGVIRQLAQMAKITIPAEDEALR
                     KLVSVHGKVDSLMAYLKLFDFVRPLLQTATALELAAYDLVRQAASDKVIYIEVRFAPE
                     LSTDQDLTILEAVSAVLVGLNRGQEDFGVLAKLLVCGLKQTNTNQTKELFSAIADLAP
                     KGLVGFDFAGNEADYPTEELRDIIQFTQSLGYPMTFHAGECGCVINVIQALELGIRRI
                     GHGTALTRNPEAIQAFVNSGATLEMCLTSNLQTGAADSIEYFPYRELVEAGANITINT
                     DNRTVSNTTLNREYQLFVEYFGTSKADFYRFNQNAIQASFASEGEKKVLLELLDQQY"
     gene            complement(3101..3188)
                     /locus_tag="U1396_001832"
     tRNA            complement(3101..3188)
                     /locus_tag="U1396_001832"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3152..3154),aa:Ser,seq:gga)
     gene            complement(3191..3538)
                     /gene="ssrA"
                     /locus_tag="U1396_001833"
     tmRNA           complement(3191..3538)
                     /gene="ssrA"
                     /locus_tag="U1396_001833"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
BASE COUNT         1057 a          746 c          646 g         1115 t
ORIGIN      
        1 gtcatcctag aaaggaaacg attatggctt ggaaatttga taataacatc cccatctata
       61 ttcaaatcag caatactatt aaattgcaga ttgtgaccaa tcaattaaaa tctggagata
      121 aacttcccac tgttcgtgac ttagccgaca ttgctggtgt caatccaaat accgttcagc
      181 gcgctttgtc tgatttagaa acagaaggat ttgtttactc agtacgcaca acaggccgtt
      241 ttgtaacgga taatcaggaa ttgattacac aaactcgcct acatttagcc caaaaggaac
      301 tggagaactt cgtgaacaat atgttagaat tgggctttag acacgatgaa ctcactagcc
      361 agttagatga ttatttgaaa ggagttactt atgagtaacg catatacttt ggttgagcta
      421 cagcaagttt caaaatctta tggtggagct gtcgccctaa ataatgtcaa tttgaagttg
      481 actgctggaa aaatcatagg acttttggga ccaaatggtt cgggtaaaac aaccatgatt
      541 aaattgatca acggtctgtt gcagccagaa tatggtcaag tattgatcaa tggtcgcaca
      601 ccatcgccag aaaccaaggc gattgtatct tatctcccag ataccactta tcttgatgaa
      661 catatgaaag tgctcgaagc aattacattt tttgaagatt tttacgctga ttttgataag
      721 gagcgtgctc tccatctttt acaagatttg ggcattgatt taaacagtcg tatgaaacat
      781 ctctctaagg ggaataagga aaaagtccag ctcattctgg tgatgagccg tcaagcacag
      841 ctgtatgttt tagatgagcc aattggtggt gttgaccctg ccgcccgaga ctacatttta
      901 aaaaccatcg tcaacaacta ctctccgact gcttctgtta ttatctctac tcacttaatt
      961 tcagatgttg agcaaatttt ggacgaggtt attttcctac actacggaag tgttattcgc
     1021 catgggaatg tagatgactt gcgaattgaa agcggagaat ctattgacga actcttccgc
     1081 caagatttta aggcttagtt agaaggagat tgctatgttt aaaaaattat tgaaatacga
     1141 atttcaatcc gtaggtaaat ggtatttggg aatttatatt gcagctgtgg tcctatcagc
     1201 agtacttggt ttttggctac aagcgttggc cctccgtaca caggctggaa atactgaacc
     1261 tggcggtgga gagatggtct tattgggaac atcctttatg acttttggta ttttgattgc
     1321 cgcactcttc ttgtcaacat ttgttctagt aatcaaccgt tttagaaaaa atgtttatgg
     1381 ccgacaaggt tatctcacta tgaccctgcc ggtatctagc tatcagatca tcttaagcaa
     1441 actacttgcc tctattgttt ggtatatctt ggcaggtatt acttgcttac tttcaattgg
     1501 aatcatcctt gcagtcattc tagcagcaag cgaagaagct attatgccag aaatacaaac
     1561 ttttgttcaa gctatcgact ggacagttct attcagtcag attttctatt atttaattga
     1621 aattaccact ggtatccttt tgatctactt ctctatatct gtcggtcaat tattcaagga
     1681 tcatcgcttc ctctttgcaa tcttgactta tatcggcatt ctcatcgtta ctggagtatt
     1741 tagcactttc tttgtcctaa gtaacctagg aacagcttat tctacaccat tttctctcta
     1801 tccaagtcca gtcttagcat tagtcaatat tatcctagct tttgcttact actttggaac
     1861 ccacttcatt atgacaaaga aattaaatct acaataaaaa gctctttact ggtctaatcg
     1921 accggtatag agcttttttc ttaatactgt tggtctagga gttccaacaa aactttcttt
     1981 tctccttcgc tggcaaaact tgcctgaata gcattttgat tgaagcgata aaaatcagcc
     2041 ttgctagtcc caaaatattc tacaaataac tgatattctc tattaagtgt agtattagaa
     2101 acggtacgat tatctgtgtt gattgtgatg tttgctcctg cctcaactag ctcacgatat
     2161 ggaaaatatt caatcgaatc agctgcacca gtttgaagat tcgatgttag acacatttca
     2221 agtgttgctc cgctattgac aaaagcttgg atagcttcag gattgcgagt aagtgctgtg
     2281 ccatgaccaa tccttctaat cccaagttca agagcttgaa tcacattgat tacacatcca
     2341 cattctccgg catggaaagt catgggataa cctaaagact gagtaaattg aataatatcc
     2401 cgaagttctt ccgtaggata gtctgcttca tttcctgcga aatcaaatcc cacaagtcct
     2461 tttggtgcca aatcagcaat agccgaaaag agttccttcg tttgattcgt attcgtttgc
     2521 tttaaaccac aaaccagaag tttagcaagc actccaaaat cttcctgtcc cctgtttagt
     2581 ccaactaaaa ctgctgagac tgcttctaaa atagtcaagt cttgatccgt cgacagttca
     2641 ggtgcaaaac gaacctcaat gtaaatgacc ttatcacttg cagcttgtcg tacaagatca
     2701 taggctgcca attctaaagc tgttgcagtt tgtaagagtg ggcgaacaaa atcaaataac
     2761 tttaaataag ccattaaact atcaactttt ccatgaacac taactaattt tcttaatgct
     2821 tcatcttctg caggaatagt aatcttagcc atctgtgcca attgtcgaat gactccgagg
     2881 gacaatgagc catccaaatg acaatgcaac tctgttttga ccaattcatt tacattcaac
     2941 actattaaca caacctccgt ctggtatatt gttaactatc atatcatatt tttgaagaaa
     3001 aacaagaatt ttaccataaa acctgaactt tcacttgttt ttcagttgta tcattcacag
     3061 acaaaaaaag aacgactatc agtcgttctt caataacata cggaagacat gggattcgaa
     3121 cccacgcacg ctgttacacg cctaccgcgt ttccaacacg gcctcttgag cctcttgagt
     3181 aatcttccat atatggagct ggtgggagtc gaacccacgt ccaaacacct gctaacttat
     3241 tcgtctacaa ccataggtta tgtcttgctt taacttgaac tcgatacata actcaaacct
     3301 agaccaagcg agtcagtaaa tctcttttgg aactgcctga ctcaatccca acgtagcttg
     3361 ctattttaag accaatcagc aaacacaagc aattcgcgac tggtcacgca ggcaggttat
     3421 taagctgcta atgcgtaagt gtttgtattt tttgcagtta tatttaactg gcatttttac
     3481 atctgccgat gagttgcaga acaagcctca taatgcctgt cgaatccgta acaaccccgt
     3541 aggatttgat acaggaatta ttat
//
LOCUS       DASGBY010000153         3531 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.154, whole genome shotgun sequence.
ACCESSION   DASGBY010000153 DASGBY010000000
VERSION     DASGBY010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.154"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(26..1459)
                     /locus_tag="U1396_001834"
     CDS             complement(26..1459)
                     /locus_tag="U1396_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001082309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HEM5342985.1"
                     /translation="MNQNLSHYQFSPESQYLDRKSARKKPSELLKHLIAFANADGGQL
                     VIGIEDEKQENIITGFKDGRAYPIDDFKKIDREMRETPLDLSFEEIPVINHKGEEDFI
                     LVISVELSSNRVIAAPNDEVYLRQGDETVKLSYEQRTQLSYDKGQRFFEDEVVPDASL
                     EDIDDSLVQDFKNRFDISERSVEEILKARRFLINGKLTKAAILLFGKYPSAFFPQARV
                     RFQRFDGTDMGTGSSFNVIKEVTFDDALPILIIKVRDFIRTQLREFQYLDDSGQFKIL
                     PEYPEFAWFEGVVNAVTHRDYSVYGDHIRVLMFDDRLEIHSPGKLPNIVTVDNIKHER
                     FSRNPRIARTLTEFGWVREMNEGVKRIYSEMESAFLHEPKFSEPGNKVVLTLENNIVS
                     RHLRTRDSLEKQFTDFGDLNADEQLLVHYMYNSGEKMTTAKAIELTGRSRSFVVKMLH
                     HLRDLEIITWFGSSKNDRNQYYLLIDK"
     gene            complement(1504..2661)
                     /locus_tag="U1396_001835"
     CDS             complement(1504..2661)
                     /locus_tag="U1396_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM5342986.1"
                     /translation="MAQEFNGDRLRESRYFRHYSISQLAENVGVSKQMISKYEKNLSK
                     PSSEVLQKIIFELKFPLSFYQTKDKFITTDLGTFYRSKLTSSQTEKKSSEMLKKALAL
                     LANFFEDYVDFPKLAEFESHENASPEEVANQIRKNWGLGDSPISSVLRLLETNGFHIA
                     IINSKSEKVDAFGSFVELKMETDSERYYCILIDQDNNNFFRQQFSLAHELGHWALHAR
                     TVYPQELSNIEYRQMEQEANRFASSFLLPASAFSEDLKGHEEDLAYYLKLKSKWNVSI
                     ASMIYRAKDLGLLNSEQYTRLQKRMSARGWRREEPEDASIPVSRPILAKQAYKLLTDA
                     GLFEKQSIVQQFNLKYGYPLPIEIFSELMDIPKETLLQERNNIVHLKSRTL"
     gene            complement(2661..3371)
                     /locus_tag="U1396_001836"
     CDS             complement(2661..3371)
                     /locus_tag="U1396_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342987.1"
                     /translation="MKYSYDIEREVIIKCLEAMSFTTRHLEQDYKVAISETSQNGIYQ
                     ATWARRSNMLKDLFDNSVVWKVLHIKRGIWQFDPILNIETGELIAFFSKNNFRTIRNR
                     YFKKGTSTHYSLSLLLKNERLYPEQEVEQLSLFDADSSEVKRREADLVRMLGEYCEHV
                     TKIRFLIVDYVGQEAVSASLEDYTPQFLSVSSVDISHLLPSSAGIIRTEAIRDEQVND
                     LVDEPQLVTLKPIVEGIL"
BASE COUNT         1098 a          750 c          546 g         1137 t
ORIGIN      
        1 attactaata gtaccctgac tgtaatcatt tatcaattaa aagataatat tgattgcggt
       61 catttttact tgatccaaac caagtgatga tttctaaatc acgaagatga tgcaacattt
      121 taacaacaaa cgagcgactt cttcccgtca gctcaatggc ttttgcggtg gtcatcttct
      181 caccagaatt gtacatatag tgaaccagca attgttcatc agcattgagg tctccaaaat
      241 cagtaaactg tttctccaaa ctatctcgag tccgtaggtg tcggctgaca atattatttt
      301 caagcgtcag gacaacctta ttcccaggtt ctgagaattt aggttcatgg agaaaagcag
      361 attccatctc agaatagata cgctttactc cttcattcat ctcacgtacc caaccgaact
      421 ctgtcaaggt tctggcaatg cgagggtttc gtgaaaaacg ttcatgcttg atattgtcaa
      481 cggtgacgat attgggtaat ttccctgggc tatgaatctc tagtcgatca tcaaacataa
      541 gcacacgaat gtgatcgcca tagacggaat aatcacggtg cgttacagca ttgacaacac
      601 cttcaaacca agcaaattca ggatactcag gtaaaatttt gaattgccca ctgtcatcca
      661 aatactgaaa ttcccgaagc tgggtgcgaa taaaatctct aaccttgata attaagatcg
      721 gtagcgcatc atcaaaggtc acttccttga taacattaaa actacttcca gttcccatat
      781 ctgtaccatc aaatcgctgg aatcggacac gcgcttgagg gaagaatgct gacggatatt
      841 tgccaaagag taaaattgct gccttggtta atttcccatt gattagaaat cgacgtgctt
      901 taaggatttc ttccacagaa cgctctgata tatcaaaacg atttttaaaa tcctgaacca
      961 agctatcatc aatatcttcc agactggcgt ctggcaccac ttcatcttca aagaaacgtt
     1021 gtcccttgtc atagctgagc tgagtgcgtt gctcgtagct caacttgact gtttcatcac
     1081 cctgacgaag ataaacctca tcatttggcg cggcaatcac tcggtttgac gacaattcaa
     1141 ctgagataac taaaatgaaa tcttcttcac ccttatgatt gattacaggg atttcctcaa
     1201 aagataaatc caaaggagtc tcacgcatct cacgatcaat ctttttgaaa tcgtctatgg
     1261 gataagccct gccgtccttg aaaccagtga taatattttc ctgtttctcg tcctcaatac
     1321 caataactag ttgaccgcca tctgcattgg caaaagcaat caagtgtttg agaagttcag
     1381 acggtttctt tctggctgat tttcgatcta ggtattggct ttctggagaa aattgatagt
     1441 gagataagtt ttgattcata tagttctcct taaatatata aaaaatactt aacaattcat
     1501 gatttacaaa gtcctagatt ttaaatgtac aatattattt ctctcttgta acaacgtctc
     1561 ctttggaatg tccataagct ctgaaaatat ctctattgga agaggatagc cgtacttgag
     1621 attaaattgc tggactatgg attgtttttc aaataagccc gcatccgtca gtaatttata
     1681 tgcctgttta gcaaggatcg gtcgtgatac tggaatactt gcatcctctg gctcttctct
     1741 tcgccatcct ctggcactca ttcttttttg tagacgagta tattgttccg agtttaacaa
     1801 acccaaatcc tttgcacgat aaatcatact ggctatagat acattccact tagacttcaa
     1861 tttcaaataa tatgctaaat cttcttcatg tccttttaaa tcttcagaaa aagcagaggc
     1921 tggtaataaa aaactcgaag caaatctatt agcttcttgc tccatttgtc tatattcaat
     1981 atttgaaagc tcctgtggat atactgttct tgcatgcaaa gcccaatgcc ctaactcatg
     2041 agccaagcta aattgttgcc tgaaaaaatt attattatct tggtcaatta aaatacaata
     2101 atatctctca gaatctgttt ccattttcaa ttcaacaaaa cttccaaaag catccacttt
     2161 ctcagacttt gaattaatta tagcaatatg gaatccattc gtttctagta acctaagaac
     2221 actggaaatt gggctatcac ctaatcccca attctttctt atctgatttg caacttcctc
     2281 tggtgaagca ttttcatgac tttcaaattc tgctaatttc gggaaatcaa cataatcttc
     2341 aaaaaaattc gccaagagag ccagtgcttt ttttagcatc tcactagact tcttctcagt
     2401 ttgtgaggat gttaacttac ttctataaaa agtacctaaa tcagtagtta taaatttatc
     2461 ttttgtttga tagaaggaca gcggaaattt cagttcaaaa attatttttt gcaatacctc
     2521 agaactcggc tttgataaat tcttttcgta tttagaaatc atctgtttag aaactccaac
     2581 gttttccgcc aattggctaa tggaataatg tctaaaatat ctcgattctc gaagtctatc
     2641 tccattaaat tcttgagcca ttataatatt ccttctacta ttggttttaa tgtaacgagt
     2701 tgaggctcat ctactaaatc attcacctgt tcatcacgta tggcctcagt tctaattata
     2761 ccagctgaac ttggaagtaa gtgcgaaata tccactgaac taactgataa aaattgtgga
     2821 gtgtagtctt ctaacgaagc actcacagct tcttgaccta cataatcaac aatcaaaaat
     2881 ctaatcttag tcacatgttc acaatactca ccaagcatcc taaccaaatc agcttctctt
     2941 cttttcactt cagagctatc cgcatcaaaa agagaaagct gttctacttc ttgttcaggg
     3001 taaagtctct catttttcaa gagtaaactt aaggaataat gagtagaggt tcctttttta
     3061 aaatatcgat tacgaattgt cctaaaatta tttttggaga agaaggctat tagttcacct
     3121 gtctcaatat tcagtatagg gtcaaattgc caaatccccc tcttaatatg caaaactttc
     3181 caaacaacac tattatcaaa taagtcttta agcatattcg atcttcgtgc ccaagtagcc
     3241 tgataaattc cattttgact agtctctgag atagcaactt tataatcctg ctccagatgc
     3301 ctagttgtaa aactcatcgc ttccaaacac ttgatgatta cttctctttc aatatcataa
     3361 ctatatttca tttattcacc tcaattcgtt tgttatttaa cttcattata acagaccaag
     3421 gagacaaaaa caagaaaaac taccaaaaaa gtcaaccaaa gtgtgtagaa ttaaataatc
     3481 ccatctcctc agcgatgcta atatctttct ccttacacat actcacatct a
//
LOCUS       DASGBY010000154         3523 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.155, whole genome shotgun sequence.
ACCESSION   DASGBY010000154 DASGBY010000000
VERSION     DASGBY010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.155"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(10..999)
                     /locus_tag="U1396_001837"
     CDS             complement(10..999)
                     /locus_tag="U1396_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5342988.1"
                     /translation="MEEQKSITMKDVARVAGVSVGTVSRVINNEPGIKESTLEKVNTA
                     IRELNYIPDVYARGMKKNKTETIALIIPTVWHPFFGEFAYHVEVELSKKNYKLLLCNI
                     SGPKRELDYLTMLQQNKVDGIIAITYSPIEDYLSSNIPFVSIDRVYENKDIACVSSDN
                     RAGAELAANTLIAKGGRHFAFIGGHNKTINETKKRRLYFEKRILEAGFPCHVLDLEEP
                     YDDFVGQVEEFLINNPQVDAIFTINDFTALDTLAVLEKLGRRVPEDVQVIGYDGIQLA
                     SEKSLALSTIRQPLESMAQEAVACLIDIIEKRERPLQVTLPISYLEGKTTKKF"
     gene            complement(1156..1701)
                     /locus_tag="U1396_001838"
     CDS             complement(1156..1701)
                     /locus_tag="U1396_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342989.1"
                     /translation="MSLQNRVEEMYKDHEVKPYISPERDLAAWLLEAKPVPKRNMVRL
                     EEGILPGDIILLWRISLGSFETTTPYSKYFEYMYGINGPAHMEQLIADGYAYVESAFD
                     SLDHITSTAKKNILKAEGVTGLSKMKAADLDTALKDNLTEEKLAPYFTVRGYALTEKG
                     RAALENHPEVLAKHPMKKMYK"
     gene            complement(1702..2079)
                     /locus_tag="U1396_001839"
     CDS             complement(1702..2079)
                     /locus_tag="U1396_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM5342990.1"
                     /translation="MIQSIGQVMLYVNDIEASAQFWKEKMGFERVEKQVQGPQTSYII
                     APKSDSEVQFVLHDKAEVAEMEPELNLGTPSILMTSVDVAKTYEELVERGVTTNPVMD
                     LGFMKVISFADNDGNYYAIREVK"
     gene            complement(2164..2517)
                     /locus_tag="U1396_001840"
     CDS             complement(2164..2517)
                     /locus_tag="U1396_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HEM5342991.1"
                     /translation="MFENLFAPDGSLVWHTALFYSFSAIILATVCFHIIKNFMEWHHN
                     NRAPKESCKAKLVSKRTHVFGNEVARTNYYVTFEWEGKRQEFRLRSDEYALLAEGDVG
                     TLHFQGTRFLGFERL"
     gene            2660..3463
                     /locus_tag="U1396_001841"
     CDS             2660..3463
                     /locus_tag="U1396_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM5342992.1"
                     /translation="MKKILVLALASSILLTACTNNSTANSSSSTASSSSPSSTTTADT
                     TASSQYAKDLAYAINNPKATFPQLSNEIGENEAAVKIKTTEGDITIKLFPEQAPLTVE
                     NFLTHAKEGYYNGTIFHRVIKDFMIQGGDPLGNGTGGESIWSGKDTTIDAGNGFKDEI
                     SAFLYNIRSSLSMANAGAGTNGSQFFINQNTTDMSSQLSSSSYPGKIIDAYKNGGNPN
                     LDGKHTVFGQVIEGMDIVDKIASVETDNSDKPKTDVKIESIEILKDYTF"
BASE COUNT         1038 a          764 c          660 g         1061 t
ORIGIN      
        1 actacttttt taaaattttt ttgtagtttt tccttcaaga taggaaatcg gtagagtgac
       61 ttgtaggggg cgctctcttt tctcaataat atcaattaga caggcaacgg cttcctgggc
      121 catagactcc aaaggttgac gaatggtcga aagggctaaa gatttttcac ttgccaactg
      181 aataccatca tagccaatca cctgcacatc ttctggaacc cgtcgtccca gtttttccaa
      241 aacagcaagt gtgtctaggg ccgtaaaatc attgatggtg aaaatggcgt caacctgtgg
      301 attgttaatc agaaactctt cgacttgacc aacaaagtca tcatatggct cttccaagtc
      361 caaaacatga caaggaaaac ctgcctctaa aatccgcttt tcaaaataca atctacgctt
      421 cttggtttcg ttgatggttt tattgtgccc accgataaag gcaaaatgac gaccaccttt
      481 tgcaatcaag gtattcgctg ccagttccgc accagctcgg ttatccgaac tgacacaggc
      541 tatgtccttg ttttcataaa cacgatcgat actgacaaat ggaatgttgg aggacaggta
      601 atcttcaatc gggctataag tgatagcaat aatgccgtcc accttatttt gttgcagcat
      661 agtcagataa tccagttccc tttttggacc agaaatattg caaaggagca acttgtaatt
      721 tttcttactc agttccactt caacatgata ggcaaattct ccaaaaaaag gatgccaaac
      781 tgtcggaata atcaaggcga tggtttcggt tttgttcttc ttcatcccac gagcataaac
      841 atctggaatg taatttaatt cccgaatggc tgtattgact ttttcaagcg tactttcctt
      901 aatacctggt tcattgttga taactcttga tactgtccca acactgaccc ctgcaactcg
      961 agctacatct ttcatagtaa ttgatttttg ttcttccatg gtttacccct ttcttttgaa
     1021 acgtttcaat aatttatact agaatatcat tgatagcgtt ttctgtcaag ggaaatagac
     1081 ttattagcaa ataaaaacac ccaaaaagct agaatgattc caacttttgg gtgccgttca
     1141 aaaatctttt ctattttatt tgtacatctt cttcattggg tgttttgcaa gtacttcagg
     1201 gtgattctcg agagcagctc tgcctttttc cgtcaaggca taacctcgga cggtaaagta
     1261 tggagccagt ttttcttctg tcaagttgtc cttgagggca gtgtccaggt ctgccgcctt
     1321 catcttggac aggcctgtca caccctctgc tttgaggata tttttcttgg cagtcgaagt
     1381 gatgtggtcc agcgaatcaa aggccgattc cacataggca taaccgtctg cgatcaactg
     1441 ctccatgtga gcaggaccat tgataccata catatactca aagtacttgg agtagggcgt
     1501 cgtcgtttca aaagaaccca ggctaatccg ccataataaa ataatatcac ctggcaaaat
     1561 tccttcttct agccgaacca tattgcgttt gggaacgggc ttggcctcca aaagccaggc
     1621 tgccaagtca cgttcggggg aaatataggg tttgacctca tggtctttat acatttcttc
     1681 aacacgattc tggagtgaca tttactttac ctcacgaatt gcgtaataat ttccatcatt
     1741 gtctgcaaag cttattacct tcatgaaacc aaggtccatg actggattcg ttgtgacacc
     1801 acgttcaaca agttcttcgt aagttttggc tacatctact gatgtcatta agattgatgg
     1861 tgtacctaag tttaattctg gctccatctc agcaacctcc gccttatcat gaagtacaaa
     1921 ttgtacctca ctatctgatt taggtgcaat aatgtaagaa gtttgggggc cttgcacttg
     1981 tttttctaca cgttcaaatc ccattttctc tttccaaaat tgagctgaag cctcaatatc
     2041 attcacatat aacataactt gtccgattga ttgaatcatc ttaaatacct cttttgcgtt
     2101 gtacgaacat gtgttcaaac cattatacac tagataggga tattctccaa agaaaaacga
     2161 ctcttagagc cgttcaaaac ctaggaaacg agtcccctga aaatgcaggg tgcctacatc
     2221 tccctctgct aaaagggcat attcatctga acgaaggcga aattcctgcc gttttccctc
     2281 ccattcaaac gttacataat aattggttcg tgctacttcg ttaccaaaaa catgggttcg
     2341 tttagagaca agcttagcct tgcaagattc tttgggcgcc cgattgttgt ggtgccattc
     2401 cataaaattt ttaatgatat ggaaacaaac cgtcgctaat atgattgcgg aaaaactgta
     2461 gaaaagggcc gtatgccata ctaggcttcc atctggggca aacaagttct caaacatcat
     2521 tattctcctt ttgcatctgt aaatatagta tatcatattg ttgttttaga tacgcttttt
     2581 atactagata aaaattgaaa aaatccatat ttcatggtag aatgagcata attttgaaca
     2641 agacaagaaa ggattttcaa tgaaaaaaat actagttctt gctctagctt cgagcatctt
     2701 gctaactgcc tgcacaaaca actcgacagc taatagctca tcttctacag catctagctc
     2761 tagtccaagc tcgactacga cagctgatac aactgcttct agccaatatg ccaaagattt
     2821 ggcatacgcc attaacaatc ccaaagctac attcccccaa ctttccaatg aaattggtga
     2881 aaatgaggct gctgttaaaa taaaaacaac cgaaggcgac atcactataa aactcttccc
     2941 cgagcaagct ccactaactg tggaaaactt tctgactcat gcgaaggaag gatactataa
     3001 tggaacaatc ttccatcgtg tcattaagga tttcatgatt caaggtggcg atcctcttgg
     3061 aaatggtact ggtggagagt ctatctggtc cggaaaagat actactatcg atgctgggaa
     3121 tggttttaaa gacgagattt cagctttcct ttataacatt cgtagctcac tttctatggc
     3181 aaacgctggc gcgggaacaa atggaagtca gtttttcatc aatcaaaata caacagacat
     3241 gtctagccaa ctctctagtt ctagctatcc tggtaaaatc attgacgctt ataaaaacgg
     3301 aggcaatcca aacttagatg gcaagcatac cgtatttggt caagtcattg aagggatgga
     3361 catcgtggat aaaatcgctt cagtcgaaac agacaatagc gataaaccta aaacagatgt
     3421 aaaaattgag tctattgaaa ttctgaaaga ttacaccttt taaaaatggg ttctataatt
     3481 tctgtagtgg gtaaaaccac cgtggagatt atggagcctt ttt
//
LOCUS       DASGBY010000155         3485 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.156, whole genome shotgun sequence.
ACCESSION   DASGBY010000155 DASGBY010000000
VERSION     DASGBY010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.156"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            378..563
                     /locus_tag="U1396_001842"
     CDS             378..563
                     /locus_tag="U1396_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5342993.1"
                     /translation="MSQPIVPLTIPQSHRFEKKSRNDILMKIRLGKTEVTFFQSINPE
                     VMETILDKVLYYDHPTQ"
     gene            544..894
                     /gene="tnpB"
                     /locus_tag="U1396_001843"
     CDS             544..894
                     /gene="tnpB"
                     /locus_tag="U1396_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HEM5342994.1"
                     /translation="MTIRLSDLGQVFLVCGKTDMRQGIDSLAYLVQSQFNLDPFSGQV
                     YLFCGGRKDRFKALYWDGQGFWLLYKRFENGKLTWPNNEEEVKALTSEQVDWLMKGFS
                     IIPKINVSKSRDFY"
     gene            946..1130
                     /locus_tag="U1396_001844"
                     /pseudo
     CDS             946..1130
                     /locus_tag="U1396_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941576.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1105..1857
                     /locus_tag="U1396_001845"
     CDS             1105..1857
                     /locus_tag="U1396_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000431172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5342995.1"
                     /translation="MGRKTSLNKKLTYPVETETITYKRKKTKGVRQAIFSQFTPEIIH
                     HELQGEDCTCPDCHGQLKEIGSTVQRQELVFIPAQLKRIDHVQHAYKCQACSQKNLSD
                     KIIKASVPKAPLAHSLGSASIIAHTIHQKFNLKVPNYRQEEDWNKLGLPISRKEIANW
                     HIKSSQYYFEPIYDLLHEKLLEQPILHADETSYKVLENDSRLTYYWTFLSGKHEKKGI
                     TLYHHDKRRSGLVVEEVLGDYAGYVHCDMLRQ"
     gene            1933..2556
                     /locus_tag="U1396_001846"
                     /pseudo
     CDS             1933..2556
                     /locus_tag="U1396_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941577.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(2768..>3485)
                     /locus_tag="U1396_001847"
     CDS             complement(2768..>3485)
                     /locus_tag="U1396_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM5342996.1"
                     /translation="INYVITDEERKVKMVMVDKNSLALISVNDPELMISKPQALTAAT
                     GMDALTHAVEALVTPGAYDVTKKLSIGAIELIKEYLPRAVANGHDIEAREGMVNAIFL
                     GGMSFNNAGLGYVHSMAHQLGAVYNLPHGVCCAMLLPVIERENTKCVPEAFRNVAKAL
                     GLHVEGKSDEECADYAIAEIEKLSETVGIPKKLTELGIEEKDFDFEYLSKNALIDACA
                     PGNPFMPTLEETIEFYKELF"
BASE COUNT         1072 a          721 c          705 g          987 t
ORIGIN      
        1 tacccccata ggaatacatc tactacgatt tttgtatcgc tttatcatct cgtaattaat
       61 tcattgataa agttttctca aaatacagct gaaccccctt caacacttaa tgtaaccgcc
      121 ccataacaag gtatctatcc aatcacccct tcctccagta tactgttata aaaaacaaac
      181 tggaggattt acactcaata aaaatcaaaa atagcatatt gaggtcaatt tctatgtgta
      241 aaatttcaat atctaagttc agattggaaa tcatagattt tgattagcca ttctcttttc
      301 gaaagcttta aaattgaaat tctctatata caatttgatt agtagatagc taattttgat
      361 tttaaatgag cattattatg tcacagccca tcgtcccatt gactattccc caatctcacc
      421 gctttgaaaa gaaaagcaga aacgatattc tgatgaaaat tcgtctcgga aaaacggaag
      481 tcacattctt ccaatcaatc aatcctgaag taatggaaac aatcttggat aaggtactgt
      541 attatgacca tccgactcag tgatttaggt caagtcttct tggtctgtgg aaaaacagac
      601 atgcgtcagg ggattgactc tctcgcctat cttgtccaaa gccaatttaa tctggatccc
      661 ttttcaggtc aggtctatct cttctgcggc ggtcgaaaag accgattcaa agctctttac
      721 tgggacggac aaggattttg gttattgtat aaacgttttg aaaatgggaa attgacctgg
      781 ccaaacaatg aagaagaggt caaggctcta acttccgaac aagtagactg gctcatgaaa
      841 ggattttcta tcattccaaa aataaatgtt tcaaaaagtc gtgatttcta ttgaaaccat
      901 ggcttttctt tgtgtataat gagataaaaa gaaggaggta agtccatggt ggcacaagat
      961 aaagtgattg aaagtctaac aaaaactatt gaaatcctga ccaacgagct aaccctcctt
     1021 cgcgaacagg ttaactatct gagacagaaa ctctacggaa aatcatcaga taaagttgta
     1081 tatcaacccg gtggctaagc ttgtttgggg aggaaaacct ccctgaataa gaagctgact
     1141 tacccagttg aaacagaaac gattacctat aaacgcaaga aaactaaagg agttcgtcag
     1201 gctattttta gtcaattcac tccagagatt attcatcacg aattgcaggg tgaagactgc
     1261 acttgtccag actgtcatgg acagttgaaa gagattggtt ctactgttca acgacaagag
     1321 ttggtcttca ttcccgcaca attaaagcgg attgaccatg ttcaacacgc atacaagtgt
     1381 caggcatgta gtcagaagaa tctgagcgat aagattatca aggcttccgt tcctaaggca
     1441 cctttggcac acagcttggg ttcagcctca atcatcgccc acaccattca tcagaaattc
     1501 aatctgaagg tacccaatta tcgtcaggaa gaggattgga acaagcttgg cttgccaatc
     1561 agtcggaagg aaatagccaa ctggcacatc aagtctagtc agtattattt cgagccgatt
     1621 tatgacctgt tgcacgagaa attgttggag cagcctattc tccatgcgga tgagacctcc
     1681 tacaaggtct tagaaaatga tagccggttg acctactact ggactttctt gtctgggaag
     1741 catgagaaaa agggaattac gctctatcat catgacaaac gacggagtgg cttggttgtg
     1801 gaggaggttc ttggggacta tgcgggctac gtacattgtg acatgttacg gcagtaactt
     1861 aggactttag tcctttagtt ctgcctatgc gatagcagtc caaggtttag gagcgaagcg
     1921 acactaagct tggtgaactg cgaaccgctg tcagcttatc gtcaattaga taaggctaaa
     1981 ctggttggct gttgggctca cgtcaaacga aagttctttg aggcgactcc taagaagaca
     2041 gacaagactt ctttaggagc taagggttta gcttattgcg accgcctgtt tgccttggag
     2101 aatgactggg cagacttgtc tactgaggaa cgattacata aacgccagac agagttggca
     2161 cccttgatgg acgagttctt tgactggtgt cgtgagcaat ctgttttgcc aggctccaaa
     2221 ttgggtactg ctttggagta tagcctcaaa tacgaaacca ccttccgaac cgttctatcg
     2281 gacggtgact tagtcttgtc caataatatg gctgagaggg caatgaagac cttggtgatg
     2341 ggccgtaaaa attggctgtt ttctcagagt tttgagggag ccaagtcgac agctatcatt
     2401 ctgagtcttt tggaaacggc caagagacac ggacttgatg cagagaaata tatgacctat
     2461 cttctagaac acttacctaa cgaggagacg ctcgcaaaaa aagaggtgct agaagcctat
     2521 ttgccatggg ataaaaatat taagagagca tgtaaattga aaaaggttcc agagtcgaca
     2581 ggactttgga acctttttca atataccttg ttattgggcg cttaccatct gcgtcgccta
     2641 gtctgatttt gattttcatt gagtattaat ttataaaaag attgagcatt gtacaataca
     2701 aaactcaatc cattaaacaa cttatttcca tctttttaag ttagcacaca attaaactca
     2761 ttatttctta aaacaactct ttataaaact caatcgtttc ttctaaggtt ggcatgaatg
     2821 gatttcctgg tgcgcaggca tcaatcaagg cattcttaga aaggtattca aagtcaaaat
     2881 ctttttcttc aataccaagc tcagtcaatt tcttaggaat gcctactgtc tcagaaagct
     2941 tctcaatctc agcaattgca taatcggcac actcttcatc tgatttacct tctacatgaa
     3001 gtcccaaggc cttggcaaca ttacggaaag cttctggtac acatttagta ttttcacgtt
     3061 ctataactgg taacaacatg gcacagcaaa caccgtgtgg caaattatat actgcaccga
     3121 gttggtgagc cattgagtga acatagccca gacctgcatt gttaaagctc ataccaccaa
     3181 ggaagatggc attgaccata ccttcacgcg cttcaatatc gtgtccattt gctacagcac
     3241 gaggaaggta ttccttgata agctcaattg ctccgataga taatttcttg gtcacatcat
     3301 aagcaccagg tgttaccaaa gcttcaacag cgtgagtcag agcatccata ccagtagcag
     3361 cagtcaaagc ttgaggtttt gaaatcatca attcagggtc attaacagag ataagagcaa
     3421 ggctattctt gtcaaccatt accatcttaa ccttgcgttc ttcatcggta atcacatagt
     3481 taata
//
LOCUS       DASGBY010000156         3439 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.157, whole genome shotgun sequence.
ACCESSION   DASGBY010000156 DASGBY010000000
VERSION     DASGBY010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3439
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.157"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            49..537
                     /locus_tag="U1396_001848"
     CDS             49..537
                     /locus_tag="U1396_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EbsA family protein"
                     /protein_id="HEM5342997.1"
                     /translation="MIKIFGKIRYHWQPDLSWAIIYWSLTFTPIFIGMALLLEKLQVS
                     RLFILLVSLFAVLVVLGLHRYFEIKDEHLRIASANPFAVQKIEIATIEKIEVSYLAIR
                     IFAKEFPNGRMYYMRKWTKKYFINHLAIHSCFKGKIELIDHLIKQDYFEEYYTKKAKS
                     IR"
     gene            complement(526..720)
                     /locus_tag="U1396_001849"
     CDS             complement(526..720)
                     /locus_tag="U1396_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEM5342998.1"
                     /translation="MKVKLIPERCIACGLCQTYSSLFDYDDDGIVVFSDDSQFEKTIE
                     PNPDILKAIKSCPTKAISAD"
     gene            771..1247
                     /locus_tag="U1396_001850"
     CDS             771..1247
                     /locus_tag="U1396_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5342999.1"
                     /translation="MSQEPWNEEVYHTETTSRKERLSKGVANTTVFTVLAIIFFVIVL
                     IIGIMAVYLSIGGGSKTDSTKEFYTPSTTTVVAESSSSAAETQESTSTDTTETETSSS
                     PAEATDGSTLTVQAGEGVGQLAARGGISIAELERLNPEKMTTGSWIAHPGDVVRIR"
     gene            1257..1934
                     /locus_tag="U1396_001851"
     CDS             1257..1934
                     /locus_tag="U1396_001851"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEM5343000.1"
                     /translation="MKSIQIAIDGPASSGKSTVAKIIAKNLGYTYLDTGAMYRSATYL
                     ALTNGIEVTDQNRIVDLLAQYPIRFGRDENGQQLVFVGDEDVTLPIRDNQVTNNVSAV
                     AALPLVREELVRLQQDIAQAGGIVMDGRDIGTVVLPQAELKIFLVASVEERALRRFKE
                     NTERGIETDLESLKEEIAARDYKDSNREVSPLKAADDAITFDTTGVSIEGVVKFISEK
                     AKEILDR"
     misc_feature    1961..2089
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            2115..2636
                     /gene="infC"
                     /locus_tag="U1396_001852"
     CDS             2115..2636
                     /gene="infC"
                     /locus_tag="U1396_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000848185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEM5343001.1"
                     /translation="MAKQDLFINDEIRVREVRLIGLEGEQLGIKPLNEAQAIADSANV
                     DLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSVVTVKEVRLSPVIDKGDFET
                     KLRHARKFLEKGNKVKVSIRFKGRMITHKEVGAKVLAEFAEATQDIAIIEQRAKMDGR
                     QMFMQLAPASDKK"
     gene            2663..2863
                     /gene="rpmI"
                     /locus_tag="U1396_001853"
     CDS             2663..2863
                     /gene="rpmI"
                     /locus_tag="U1396_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEM5343002.1"
                     /translation="MPKQKTHRASAKRFKRTGSGGLKRFRAYTSHRFHGKTKKQRRHL
                     RKAGMVHAGDFKRIKSMLTGLK"
     gene            2907..3266
                     /gene="rplT"
                     /locus_tag="U1396_001854"
     CDS             2907..3266
                     /gene="rplT"
                     /locus_tag="U1396_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019786714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEM5343003.1"
                     /translation="MARVKGGVVSRKRRKRILKLAKGYYGAKHLLFRTAKEQVMNSYY
                     YAYRDRRQKKRDFRKLWITRINAAARMNGLSYSQLMHGLKLAEIEVNRKMLADLAVND
                     AAAFTALADAAKAKLAK"
BASE COUNT         1093 a          612 c          740 g          994 t
ORIGIN      
        1 ataggaaaat ctcttttttt gtgctagaat aatagatgga ggtccgatat gatcaaaatt
       61 tttggtaaaa ttcgttacca ttggcaaccg gatttatcat gggccatcat atactggtca
      121 cttaccttca cacctatttt tattggtatg gcacttttat tggagaagtt gcaagtttca
      181 agattattta ttctacttgt ctcactcttt gctgtattag tagtgctcgg cttacatcgc
      241 tatttcgaga taaaagatga gcatttacgg attgcttcgg ctaatccttt tgcagtgcag
      301 aaaattgaaa ttgctaccat agaaaaaatt gaagtttctt atttagccat tcgtatattt
      361 gcaaaagagt ttcccaacgg acgaatgtat tatatgcgta aatggacaaa aaaatacttt
      421 attaaccatt tagctattca tagttgcttc aagggtaaaa ttgaattaat agaccattta
      481 ataaaacagg attattttga agagtattat acaaaaaaag ccaaatcaat ccgctgaaat
      541 ggcttttgta ggacatgatt tgatggcttt gagaatatct ggattgggtt caatcgtttt
      601 ctcaaattgt gagtcgtctg aaaaaacaac gataccgtcg tcatcataat cgaatagaga
      661 tgagtaggtt tggcagagcc cgcaagcaat gcaccgttca ggaataagtt ttactttcat
      721 attagtattg taatcatatt ttaataaaaa tacaaggagt tttctcaata atgtcacaag
      781 agccatggaa tgaagaagtt taccacacag aaacaactag tcgtaaagaa cgtttgagta
      841 agggggtagc gaatacaaca gtatttacag ttttggcaat tattttcttt gttatcgtac
      901 tgattattgg aattatggct gtctatctct caatcggtgg cggtagtaaa acagattcaa
      961 caaaagaatt ttatacccca agcactacaa cagtcgtagc agagagctct tcatcggctg
     1021 ctgagacaca agaatctact tcgactgaca cgacagaaac agaaacaagt tctagcccag
     1081 cggaagcaac ggatggctct acccttactg ttcaagcagg tgaaggtgta ggacaactgg
     1141 ctgctcgtgg tgggatttca attgcagagc tagagcgttt gaatccagag aaaatgacta
     1201 cagggtcttg gattgctcat cctggggatg tagttcgtat tagataaaga ggagttatga
     1261 aatcaattca aattgcaatt gacggtccag cttcaagtgg aaagtcaacg gtcgctaaaa
     1321 ttattgctaa aaatttggga tatacttact tagatacagg agctatgtat cgctcggcta
     1381 cctatctagc cttgacaaac ggcatagagg tcacagatca aaatagaatc gtggacttgc
     1441 ttgcccagta tcccattcga tttgggcggg atgaaaacgg tcagcaactt gtttttgtcg
     1501 gtgatgagga tgttactttg cctattcgag ataatcaagt aacaaataat gtatcagcgg
     1561 tagcagcgct tcctctagta cgggaagaat tggtccgcct gcaacaggac attgcgcaag
     1621 ctggtgggat tgttatggat ggtcgtgata ttggtacggt tgtattgccg caagcagaac
     1681 tcaaaatatt ccttgttgcc tctgttgaag agcgtgccct tcgtcgattt aaggaaaata
     1741 cggaacgtgg cattgagaca gacttggaat ccttgaaaga ggagattgcg gctcgtgact
     1801 ataaagattc caatcgagaa gtttctcctt taaaggcagc agatgatgct attacttttg
     1861 atacaacagg agtatctatc gaaggtgtag tgaaatttat ttccgaaaaa gcgaaagaaa
     1921 ttcttgacag gtagctttag acatgttaga atagtcgtat tgagaaaagc agaagtgaga
     1981 acttctcgcc ttgcgactaa cgttgtctgg ctctacggat taagatttct tcggaaagaa
     2041 taatggtgta gtgcggactt gtttagcaag tccgtttcgt ttttctcgaa aaatataaaa
     2101 tgaggtgaaa agccatagca aagcaagatt tgttcatcaa tgatgaaatc cgagtgcgtg
     2161 aagttcgtct tatcggtctt gagggtgaac agttgggaat caaaccactc aatgaggctc
     2221 aggccattgc tgatagcgcc aacgtggatt tagtattgat tcaaccccaa gctaaaccac
     2281 cagtagcgaa aattatggac tacggtaagt tcaaatttga atatcagaag aaacagaaag
     2341 aacaacgcaa aaaacaaagt gttgtcactg taaaagaagt gcgtctaagt ccagttattg
     2401 ataaagggga tttcgagaca aaacttcgtc atgcccgtaa atttcttgaa aaaggaaata
     2461 aagttaaggt ttcgatccgt ttcaagggtc gtatgattac ccacaaagaa gttggagcga
     2521 aagtattagc tgagttcgct gaagcaaccc aagatattgc cattatcgaa caacgcgcta
     2581 agatggacgg acgtcaaatg tttatgcaat tggccccagc ttcagataaa aaataagctt
     2641 tttaagcaaa aggagaatta acatgccaaa acaaaaaact caccgcgcat cagctaaacg
     2701 tttcaaacgt acaggttctg gtggattgaa acgcttccgg gcttatactt cacaccgttt
     2761 ccacggtaaa actaaaaaac aacgtcgtca ccttcgtaaa gcaggtatgg tacatgctgg
     2821 tgacttcaag cgtatcaaat caatgcttac aggtttgaaa taagccgact tactagaatt
     2881 tagattatca tttggaggaa aattaaatgg cacgtgttaa aggtggcgtt gtttctcgta
     2941 aacgccgtaa acgtatttta aaattagcta aaggttacta cggagctaaa catctcttgt
     3001 tccgcactgc gaaagaacaa gtcatgaact cttactacta tgcataccgt gaccgccgtc
     3061 agaaaaaacg tgatttccgt aaattgtgga tcactcgtat caatgcggct gctcgtatga
     3121 acggtttgtc atactcacaa ttgatgcacg gtttgaaatt ggccgaaatc gaagtaaacc
     3181 gcaaaatgct tgctgacttg gcagtgaacg atgcagcagc tttcacagct cttgcagatg
     3241 ctgctaaagc aaaacttgct aaataagtat aaaaatgtaa agaacttggt agtgatgaac
     3301 caggttcttt atttttggaa agtagctcac tacttgctaa atttcgatat gagtgatata
     3361 cttaactagt aaataaatcg acggttttaa ctttatcgtc atttagtttt tcttttgtta
     3421 cttcatcaac tcgccttgc
//
LOCUS       DASGBY010000157         3403 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.158, whole genome shotgun sequence.
ACCESSION   DASGBY010000157 DASGBY010000000
VERSION     DASGBY010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3403
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.158"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(556..1359)
                     /locus_tag="U1396_001855"
     CDS             complement(556..1359)
                     /locus_tag="U1396_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM5343004.1"
                     /translation="MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLL
                     AEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMDIYANELTWQAMESKLGKIDVAQ
                     KHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
                     ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIY
                     LGHLSKENNIKELAHMTMVNQLAQADLGVGVDFQVYDTSPDTATPLTKI"
     gene            complement(1366..2715)
                     /gene="vicK"
                     /locus_tag="U1396_001856"
     CDS             complement(1366..2715)
                     /gene="vicK"
                     /locus_tag="U1396_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     VicK"
                     /protein_id="HEM5343005.1"
                     /translation="MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQL
                     NQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSY
                     MSDGVIATDRIGRIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQTPE
                     IVIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSH
                     ELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVG
                     QIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDN
                     ILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSR
                     AQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE"
     gene            complement(2708..3403)
                     /locus_tag="U1396_001857"
     CDS             complement(2708..3403)
                     /locus_tag="U1396_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005589489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5343006.1"
                     /translation="MLIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPD
                     IVILDLMLPELDGLEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSN
                     RELQARVKALLRRSELAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHRE
                     FELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDAPSRPEYIL
                     TRRGVGYFIKGND"
BASE COUNT         1006 a          827 c          586 g          984 t
ORIGIN      
        1 gagttcgtca acaagtcctt atttccagtt gttgagctga aacagtctat ccccagactg
       61 tttcactccc acccccgcac agctcaaact gtctgggaga cagtttgagg ttggagataa
      121 agcgaacttt gttcgcaacg atcgtaaggt cagatttgga gtgtaaaaca cgaacaaatc
      181 tgccaatcaa ccactgcgct gagatgttga cacgaaccct gagaagcgag gttaagcttt
      241 ttgcccagcc tctacatccc gcaaattcct tctctaatcg aatacatttt attacttcca
      301 tatagacctc ttttcttcac aaaaagggcc cctattctgc tcaatgaaca agaaaaaagc
      361 catgcaaaac atgacctttc cctatggaaa aagtcacatg aatactaagc ccttatgagc
      421 agtcttatcc cttgtataat cggttcatat aacctcacta caagttttaa gaacgactaa
      481 taagtagctt aattattcat gtaacttcac ctcgtataat tagtaatttc agtataactt
      541 agtttgtatc aattgtcaaa tcttggtcaa gggagtcgct gtatctggcg atgtgtcata
      601 gacttggaaa tccactccaa ctcctaaatc agcctgcgcc aactgattaa ccatggtcat
      661 gtgagccaat tccttgatat tgttttcctt tgacaaatgc cctaggtaaa tctttttggt
      721 ccgatttccc aacgagcgaa tcatggcatc agctccatct tcattacaaa gatgaccctt
      781 atctgacaaa atccgttgtt tgaggttcca agagtaagaa cccgagcgca aaatttcaat
      841 atcatggttg gattcaatca aataagcatc ggcattttct acaattccaa ccatgcggtc
      901 actgacatag cctgtatccg tcaacataac aaaggatttg tcatccttca taaaacggta
      961 aaattgcgga catgcagcat catggctaac tccaaaggac tcaatatcta ggtcgccaaa
     1021 agtcttcata gcacccaatt caaagatatg tttttgagcc acatcaatct tgcccaattt
     1081 gctctccata gcctgccagg tcaattcatt ggcataaatg tccatcccat acttacgtgc
     1141 taaaacaccg ataccatgga tgtgatcgct atgttcatgc gttaccagga tagcatcaat
     1201 atcctcaggc tttcgatcaa tttccgccaa aagactggta atctttttcc ctgataagcc
     1261 agcatccact aagattttct ttttatctgt ttctaggtaa aaacaattcc cgctggaccc
     1321 cgaagctaaa atactataat taaaaccttt tccgatcata ttctcctatt cttcctcatc
     1381 tgaatcatcc cactcatcta gtgcgatgtc cttactgtac ggcaagacaa ttgtaaacgt
     1441 tgagccatga ccatattcgc ttttagccca gataaagccc ttatgttgtt tcacgatttc
     1501 ttttgcaata gctaaaccaa gacctgtacc accttgggca cgtgatcgtg ccttgtctac
     1561 gcgataaaat cggtcaaaaa ttctaggtaa atctgctttc ggaatcccca gaccttcgtc
     1621 tgatacggat acaatcaact ggctatctgt ggtcttcatg ctgaaggtaa ttgtcccgcc
     1681 atctggcgaa tatttaatgg cattatttaa gatattatcc aaaacctgag tcatcttatc
     1741 tgtatcaatc tcaacccaaa taggactgat ttgatagtca cgaacaatcg tatagacctt
     1801 atctgaatca gcatttttca tttggtcaaa acggttaaga ataaaggtca caaaagcagt
     1861 aaagtttatc agttcgacat ctatctgacc aacttgatta tcaatacgcg ataaacttag
     1921 gaggtctgta atcatccgca tcatgcggtt ggtctcatct aaggatacct taacaaaact
     1981 cggtgcaaca gactccgtca gcgctccctc atccagagcc tctagatagg atttgacgga
     2041 agtcaatggc gtacgcaatt catgactcac atttgataca aacagcctac gttcccgttc
     2101 ttccttggct tgctcggtca tatcatgcaa gacgacaacc aggccagaaa tcagaccact
     2161 ctcactacga atcgtggcaa aattagcgcg taaagtcaaa aattcttcgt tttcattggt
     2221 gtgatcaatc acaatctcag gtgtctgagc caacaaatct ctcaatgtat aacggtctga
     2281 taaatctaaa acctctagca ggtgatactg ctcctgcttt tggctagaaa gccccaactg
     2341 tttctgggcc atatcgttaa tcatgatgat ccgtccgata cggtctgtag caataacacc
     2401 gtcactcata taggacagga tggacgtcag acgcgtcttt tcttgttcta aattatcatg
     2461 agttaagcgg atgacctcgg acagatcatt aagagaattc gccatatctg tgatttcagg
     2521 acttcccctc atgtctaaca catctgcata attcccctca attaaggcat tgactttttg
     2581 attgagttgt ttaatttgct tattatcccg atagttttca atcaaaagga ccgtcagagc
     2641 aattagaaag ccaatcaaaa tgacaacaaa ccaaaattct gccgtggtca ttaaataacg
     2701 taattgatta atcatttcct tttataaaat atcccactcc gcgacgagta agaatgtatt
     2761 ctggtctgct tggtgcatct tcaattttct cacgcagacg acgaatcgtt acatccaccg
     2821 tgcggacatc accaaagtaa tcataacccc aaactgtttc caatagatgt tctcgagtca
     2881 taacctgacc taagtgtttg gccagatggt ggagcaattc aaactcacga tgggtcagct
     2941 ccagctcttt accatgcttc ttagcaacaa acgcatcagg cagaatgacc aaatcgccaa
     3001 tcaccaactc tggagttcct gttgactcaa tatttgtctg cgtctctgcc aattcactac
     3061 ggcgaagaag agccttaaca cgcgcctgta attcgcgatt agagaagggt ttggtcacat
     3121 aatcatccgc cccgatttca agcccgataa ccttatcaaa ttcgctatct ttagcagata
     3181 acatcaagat tggaacattg ctggtcttac gaatcgttcg agcaacctct agtccgtcca
     3241 attctggcaa catcaagtcc aaaatgacaa tgtcaggaaa ctcagcctca aatacttcca
     3301 aggcttcacg tccatcgaaa gctgtcacaa cttcatatcc ctcacgcgtc atattaaact
     3361 taataatatc tgagattggt ttttcatcat ctacaattaa tat
//
LOCUS       DASGBY010000158         3401 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.159, whole genome shotgun sequence.
ACCESSION   DASGBY010000158 DASGBY010000000
VERSION     DASGBY010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3401
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.159"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..505
                     /locus_tag="U1396_001858"
     CDS             <1..505
                     /locus_tag="U1396_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HEM5343007.1"
                     /translation="GPFGIGKTTLANILHKRIENSYLYDPELLGDFLQHQLPKTVCPE
                     DFQDYSVWRRSTYKIVFDLATKTDKIIIIPMTIYKKEYYQEITQQLIQDKIPLEHYIL
                     LADKTTILERLDNRVNEDNIWAKRHLDVCLKAFESHIPGQRLNTDSLKPEEVAEEILM
                     LSEFTKK"
     gene            672..1742
                     /gene="xerS"
                     /locus_tag="U1396_001859"
     CDS             672..1742
                     /gene="xerS"
                     /locus_tag="U1396_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012658412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerS"
                     /protein_id="HEM5343008.1"
                     /translation="MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKE
                     YRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDMEAFILYLRERPLLNANTTQNGVS
                     QTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
                     LFLGDETMEFLDYVDKEYQVNLSNRALSSFQKNKERDLAILALLLASGVRLSEAVNLD
                     LRDVNLNMMIIEVTRKGGKRDSVNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEY
                     RGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHAN
                     TQVTDLYTHIVNDEQKNALDQL"
     gene            complement(1812..3322)
                     /locus_tag="U1396_001860"
                     /pseudo
     CDS             complement(1812..3322)
                     /locus_tag="U1396_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646836.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
BASE COUNT          973 a          720 c          749 g          959 t
ORIGIN      
        1 tggcccattc ggtatcggaa agactacttt agcaaatata ttacacaaac gaatagaaaa
       61 ctcatatctc tatgatcccg agttactagg tgatttctta caacatcaat tacctaagac
      121 tgtatgtcct gaagattttc aagattattc cgtttggcga cggagtactt ataaaatagt
      181 atttgattta gcgactaaaa ctgataagat tattattatt cccatgacaa tctataagaa
      241 agaatattat caggagatta ctcagcaatt gatacaggat aagattcctt tggaacatta
      301 tattttgtta gctgacaaaa caaccatttt ggaacgttta gataatcgag tcaatgaaga
      361 caacatctgg gccaagagac atcttgatgt ttgtttaaaa gcttttgaaa gtcatattcc
      421 ggggcaaagg ttaaacacag acagtttgaa gccagaagag gttgcggagg aaattctaat
      481 gctaagtgag tttaccaaga aataatgtag acttttggga ttttgggtgt gaaaaaaaat
      541 ttccagttat ttatgttttt tggttatccc tctgatatcc ccacaaacat ctttccgaaa
      601 aactataatt ttcttgaaac ttatgtaaga ttatgctata ctactcatat agctaaaatc
      661 aggagaaaat gatgagacgc gagttattac tagaaaaaat tgatcaacta aaagaaatta
      721 tgccttggtt tgttctggaa tattatcagt caaaattggc tgtgccttac agttttacta
      781 ccttatatga atacttgaaa gaataccgtc gattctttga gtggttacag gattcggatt
      841 tggtatctgt ggaacggatt gctgacattc ctttggatat tctggaacat ttgacaaaaa
      901 aagatatgga agcctttatt ctttatctgc gggagcgtcc cttgctgaac gccaatacca
      961 cgcagaatgg tgtgtcgcag accaccatta accgtaccct gtcggctctt tctagtctct
     1021 tcaagtattt aaccgaagaa gtggaaaatg agcagggcga gccctacttc taccgcaatg
     1081 tcatgaaaaa ggtatctacc aagaagaaga aggaaacctt ggcagcgcgg gctgagaaca
     1141 tcaagcaaaa gctctttttg ggcgatgaaa ccatggagtt cttggactat gtggacaagg
     1201 aataccaagt caatctctct aaccgtgccc tctcctcttt ccagaaaaat aaggagcgag
     1261 atttggcgat tctggcactt ctcttggctt ctggcgtccg tctgtcagaa gcggtgaatt
     1321 tggatcttcg agatgtaaat ctcaatatga tgattatcga agtaacccgt aagggtggta
     1381 agcgggactc ggtcaatgtg gctgggtttg ctaagcccta tctggaagcc tatatgagca
     1441 tccgtcagca acgctacaag gctgaaaaaa cggatacggc cttcttcctg tccgaatacc
     1501 gtggtctacc caatcgtatc gatgcttctt ctattgaaaa aatggttgcc aagtactctg
     1561 cggacttcaa gatacgcgta accccccaca aactccgtca taccttggca actcgcctat
     1621 acgacgccac aaagtcgcaa gttctggtca gtcatcagct gggccacgcc aatactcagg
     1681 tcactgacct ctacacccat atagtcaatg atgagcaaaa aaatgcactg gatcaattat
     1741 agtgttacgt aatattaatt atgtaaataa attaaggagt aagcgaaaac ttaccccttt
     1801 ttctcttaaa tctaaatcaa tgctttcaat ttttcctgat tgacagctgg gtactggtcc
     1861 aaaaaggctg agagagttcg taaaacggca ggtatgtgtc cagtctggtc attctccacc
     1921 tgcaagacca agagagtggc tcgtggagac tcatacggag caagagccag ccgtcaccat
     1981 aaagctcagt caggtcaaac cgcactcctt cttcgttttc tgggttaaaa gcaaagcctt
     2041 cgaggctggt gtttctgaaa tcagcaataa cctgttcacc aagtgctcga tagcctgccg
     2101 cttctagttt gaaccgtact tcttgggttt caagtggttg cttgagctgg gcaatcaagt
     2161 cgtccaagga cttgccttcc gcttgcagtt ttggtaagag cataaggatc ttagccgcta
     2221 cataggtccc gtcatcgagg aagtaatttt ccttaaaggc agcatgtcca gatgtttcga
     2281 tagccaactg gcaatcaact ccctcttgat tggctaaaat agcacggttg atgacattac
     2341 ggtagcctga aatatagcga atttgtttgc ctcccaggct ttctataaag accttaaggt
     2401 gttcagtcgt tggggaattg gtcacaatgc tggttcctgg atgttcagct aggacaatct
     2461 ggctgagaac ggcaatcagg ttgttacgat tgagaatttc tcctgacttg gtaaccaggg
     2521 cggcacggtc aacgtcggta tcaaagataa tgcctaggtc tgcaccttgc ttcaagacag
     2581 cctgacgaat gctttccata gcttccttgt tatctgggtt tggaacatgg tttgggaagg
     2641 tgccgtctgg gtctaggaat tgtgaaccag tggtatctgc tcccaattct gccaaaactt
     2701 tctcagcaaa aaatccgcct gcaccgtttc cagcatcgac gatgatatta agacctgtca
     2761 gtggtttttc ttgttcacca caggcggtac gaattttgcc aactaagtct tgggcataag
     2821 gcgtaatcaa atctgctttg gtcacacttc caaggtcaga agccggcaag tcttcactac
     2881 tggagaggat gaagtcaata tcttcatgtt ctgctccacc attttccgaa aaaatcttaa
     2941 tgccgttgaa gtaatgcggc agatggctgg cagtgatcat gacaccagca tggcacttga
     3001 actgaggata ctgggtgctc atgaagagag ctggcgtggt agccatacca aagtcaatca
     3061 gctgaacgcc cagacgaacg gcttcttctg taaaggctgc gaccaaatct ggaccgctga
     3121 ggcggctgtc tcgaccgata ccgatggtca attggccttt ttgataggtc tgcgccagtt
     3181 ccggcttctg agttagccaa tgaataagtc cgcgaactac ttcctgggtg gcttgcggag
     3241 tgagattgac agcatattcg tctgtagcga tagcaattcc acgaatatct gatccatttt
     3301 gcaagacgtg atgatgggac atagtaacct cctaattcaa actaaattta gtatatcata
     3361 ttttcaaagc ggtttcaaaa tgaaaaaagc acagcttcta c
//
LOCUS       DASGBY010000159         3256 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.160, whole genome shotgun sequence.
ACCESSION   DASGBY010000159 DASGBY010000000
VERSION     DASGBY010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.160"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            810..1460
                     /locus_tag="U1396_001861"
     CDS             810..1460
                     /locus_tag="U1396_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5343009.1"
                     /translation="MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEE
                     QFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTAMGDEYIQLISFNQIISDYVVKP
                     FSPTILVKRIENILRGKGETDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
                     KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTIVGRGYQIEGT"
     gene            1462..2850
                     /locus_tag="U1396_001862"
     CDS             1462..2850
                     /locus_tag="U1396_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM5343010.1"
                     /translation="MGIARKSFIIVAAMISFISVTLLGLLYYAMPIYYNQVKKQELRH
                     DYMTVAKQLDGMPEAKIISEIDDFDIKTPNIIISLFSSDRKIIYPDPNDEMAKKHENE
                     YLENGDFDEIGSWGAEITSAEGVTYYLLFNYGFHSLSDVSQTLVTFYPFILLLIIVLA
                     VSVAFVYSRLSTRRIARISETTRRMQSLESGISCAVAGTDEITILAQDINSLYSKLLS
                     SIDELRTENERAMAREKEKSDFLRITSHELKTPIASMLGLVEGMIYNVGPFKDHDTYL
                     KKCKEILQEQSELVHSILEATNLDMALKESREQIRLDQLIDSSLTSYQSLAEVKGYQF
                     EVELSPVLIEANPVYFLKAIKNILDNAFRYSCKEAIIRVVLRQNQLIIENQVERVLSD
                     EELDQVFRPFYRPDYSRDKKDGGIGIGLFIVQKILEKHGFPYTFYASDTQTMRFMIHL
                     QSQSTANSNELI"
BASE COUNT         1105 a          461 c          656 g         1034 t
ORIGIN      
        1 attaagccta aaccgagtgc actaattaaa ccttgatagg tatggaaact acatcgaata
       61 attaacgaat ataaaaatgc ccattttgca tatttagggt taaccagtaa gcacaagtta
      121 aggaagaaaa tttcttcata aaatccgttc aacaatgagt acaagatcag tgataaatca
      181 atgttaggaa atagttgaaa catggatgga gtgttggaag ctagaaactg ataggatact
      241 agattataga tatccaagca taatgcagaa aaaatgaata aggcaacagc ttgtaatgga
      301 acccaaggag taataaaaat atgttttttc caaattgaga aatcaaaatt tcggagtaat
      361 agatagaaga tggctattgt gagccaaact aactgtagag ccaaagcctt ataattatcc
      421 attgttgaaa atgtcaaatt ttcttgaaga gttgtagttt gattttgtaa ggctatgtat
      481 tggagagtag agttgatgat tccatctcca aataaaataa ttgttagaat gagaatatca
      541 aaccatttta atacggttaa tttttttgga ctccacataa tgggatagtt cctttcattt
      601 ttgtttagtt cagtttatca aacaaatcta tatatgctct cggtttcgtc tgttttttat
      661 ctgttttaaa caaaagaagt caaaagaaag ctgaaatagc agaacagggt gctctattta
      721 tctatgatag agttgcacca ttgtacgaat cggtatataa ttgaagtata ataatatttt
      781 ataatagaac tttacgagga ggtataaaaa tgtcaaggat tttggttgta gaggatgaca
      841 tagttattag tcaagttgtt tgtgagtttt taaaagaaca tggttatcag gtagaatctg
      901 tttttgatgg aaaggttgct ttagaaaggt ttcaagaaga acaattcgat ttaattgttt
      961 tagatatcat gattccatct atgacaggtt tggaagtact gaaggaaatt cgcaaaactt
     1021 ctcagattcc aattttgatg ctgacagcca tgggtgacga atatatacag cttattagtt
     1081 ttaatcagat tataagtgat tatgttgtta aaccattttc accaactata ttggtaaaac
     1141 ggattgagaa tattttgaga ggaaaaggag agacagatag cattgagata ggaacaattc
     1201 ttattcaacc aactagcggg gcagtttata tggaagaaga agaagttcaa ttgacgaaaa
     1261 aagaatatga agttttacta tatttagcta aacgacgtgg gaaaattgtt agtcgtgata
     1321 acttgatgat gggaatatgg ggatatacgg aattggatag tcgtgtctta gataatcata
     1381 tcaagaatat ccgtaagaaa ttgccgtcac ttcctttgaa gacaatagtt ggtcgtggtt
     1441 atcaaataga gggtacttaa tatggggatt gccagaaaaa gttttattat tgttgctgcg
     1501 atgatttctt tcatctctgt aacattgtta gggttattgt attatgctat gcctatatat
     1561 tataatcagg ttaagaaaca ggaattgaga cacgattata tgactgtggc taaacaattg
     1621 gatgggatgc cagaagctaa gattatatct gagattgatg atttcgacat aaaaactccg
     1681 aatattatta ttagtctttt ttcgagtgat agaaaaatta tttatccaga ccccaatgat
     1741 gaaatggcta aaaagcatga gaacgagtat ttagaaaatg gggattttga tgaaattggt
     1801 tcttggggag ccgagataac atctgcagaa ggagttacat attatctgtt atttaattat
     1861 ggatttcact cgttatctga tgtcagtcaa acattggtaa ctttttatcc attcatattg
     1921 ctgttgatta ttgttctggc agtttcggta gcttttgttt acagtagact gtccactcgt
     1981 agaatagcaa gaatttcaga aacaacaaga cgaatgcaat cgttagagtc tggaatcagt
     2041 tgtgctgttg caggaactga tgaaataaca atattggctc aggatattaa cagcctgtat
     2101 agcaagttat tgtcaagtat cgatgaatta agaacggaaa atgaacgtgc tatggcacgt
     2161 gagaaggaga agtctgattt cctccgtatc acatcacacg aattaaaaac tccaatagct
     2221 agtatgttgg ggttagtcga aggcatgatt tataatgtgg ggccatttaa ggaccatgat
     2281 acatatttaa aaaaatgcaa ggaaatcttg caggaacaat ctgagttagt tcattctatt
     2341 ttagaagcga caaatcttga tatggcttta aaggaaagca gagaacaaat ccgattagat
     2401 cagttgattg attcctcttt aacaagttat cagagtttgg cagaggttaa gggctatcaa
     2461 tttgaagtag aactatcacc ggttctcatt gaggcaaatc ctgtttattt cttaaaagct
     2521 attaagaata ttttagataa tgcctttcgg tactcatgta aagaggctat tattcgtgta
     2581 gtactacgcc aaaatcaatt aataatcgaa aatcaggttg aacgtgtttt aagtgacgag
     2641 gaattggatc aagtctttcg tccattctat cgtccagact acagtcgtga taagaaagat
     2701 ggtggcatag ggattggttt gtttattgta cagaaaatat tagaaaaaca cggctttccg
     2761 tacacttttt atgcttctga tacacaaact atgcgtttta tgattcattt gcaatcacaa
     2821 agtacagcga atagtaatga attgatatag gtaaaatata gacaatattt agtttttctt
     2881 ttattacttc gacgtaagag gaaactccgt ttccttattt ccaacttcaa acactccact
     2941 ggattgtttg aactcgcttt gctgtactct gcaggggtga cttgctccgc aagtgctatc
     3001 tccaaccttg cacagtcact cgactgtaca agctgtctgc agctattgaa gcgaacttgc
     3061 ttcgccctat ctccaacctc caaaggttcc ccaaaccttt ggagcgagta ctaaaagtaa
     3121 actaaaagac tataaaagag acatgatttc atccattttt gaaaacaggt ctcttttatt
     3181 gtagtctcaa atggaaaata gaaaaaaaac aggagaggaa tagaatggcg acagtctaac
     3241 tttgtataat ggatgt
//
LOCUS       DASGBY010000160         3202 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.161, whole genome shotgun sequence.
ACCESSION   DASGBY010000160 DASGBY010000000
VERSION     DASGBY010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.161"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(1..740)
                     /locus_tag="U1396_001863"
                     /pseudo
     CDS             complement(1..740)
                     /locus_tag="U1396_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
     gene            847..1800
                     /locus_tag="U1396_001864"
     CDS             847..1800
                     /locus_tag="U1396_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEM5343011.1"
                     /translation="MQDYYTPKGKHLTLSDRRNIERWLHEGCSNREVARRLDKAPQTI
                     HNEVKRGLILQQVRQSRFKKVYSADRAQMAYEENRKCSVKTVQLDKRTKEKICHYLTQ
                     KYSPEMMAKSGKVTVSVSSIYYWIHHGHLGVGKEALLYPRKAKANKKQASPNFKPAGK
                     SIEERPESINKRENIGDFEIDTVIQTRAKNECLLTLTDRKSRYQIIRLIPDKSASSVN
                     HVLRTILQEYQIHSITADNGTEFSRLSEVFDPDQIYYANPYASWERGTNENHNRLIRR
                     WLPKGSKNATKKQVTFIENWINNYPKKVLDYKTPREVLYAG"
     gene            2037..3041
                     /locus_tag="U1396_001865"
     CDS             2037..3041
                     /locus_tag="U1396_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEM5343012.1"
                     /translation="MHLFTDDEKILSKLSEKGNPLERLDAVMNWNIFLPLLSELFSRK
                     DKVISRGGRPHLDYLMMFKVLLLQRLHNLSDDAMEYQLLDRISFRRFVGCHEDTVPDA
                     KTIWLYREKLTKSGREKELFDLFYAHLTDEGVIAHSGQIVDATFVECPKQRNSREDNQ
                     KIKKGEKIEGWNKTKRSQKDVDATWTRKGNVRYFGYKNHICVDRKSKLIKNYEVATAS
                     VHDSNVLAPLCDANEAVFDDSAYVGKSVPEGCRHHTIRRAFRNKPLTETDKVINRHIA
                     KVRCRVEHVFGFIEMSMKGSSCRSIGKARAKTNVTLTNLLYNICRFEQIKRLGLPSWA
                     "
BASE COUNT         1036 a          622 c          668 g          876 t
ORIGIN      
        1 tgttccattc gtaactgtag tccggctagg cttctagtta atgtatgttc gatgtcaaag
       61 agacgacaca gttcagaaaa acgtgtttca atagttcgtc tcatggccat tactttccaa
      121 ttgttatgtt cttcagcccc tgtcatgttt ttacgaaatg gcgtccatag atggtaacct
      181 tcttgttcta agtccttctt gagttcactg ctcaggtagc ctaaatcacc taggataacc
      241 gattgcttac acccctctaa tagctcataa accaccttga tgtcatgaac agaggctggc
      301 gtgacaacat agttcagaat ataacctgat aaggtcacca gcatatgaac cttgaagccg
      361 tagaaccaaa gatgtttaga ggcgttgtag ccaatatcgg ctaatccttt aaaaatgcta
      421 gctctgtgat tacgaacggg ttggcaaagt ggcaaaggaa aactatctat aatagctagt
      481 ttatcagatg gaagcatttc actcatagct tttcggatga attggactag ccaaatcaat
      541 tgtttagacc gacgattgaa acgacttctt tctagtaact gaccacaagg aaagaggtgg
      601 ccgatgctgt agaaatggcg ttgtgatgtt atgcctagtt ctgcttgtaa caaaagtaag
      661 acaaggattg attcatctga aactttaact aagccaacat ttcgccgata tttaaaggaa
      721 tctgggcaat agttttggta gaagtgataa aagttctaaa atgaagttag ccacttaaaa
      781 gtatgaaaaa acacctcaga gagatataat tgtaatcacc acaaaaacaa ttagaaagac
      841 tatgagatgc aagactatta tacaccaaaa ggaaaacatt taacactatc agaccgtaga
      901 aatattgaac gctggttaca tgaagggtgt tccaatcgtg aagtggctag gcgactagat
      961 aaagctcctc aaaccattca taatgaggtc aagcgggggc taattctcca acaagtgcgt
     1021 caaagtaggt tcaaaaaggt ctattcagcc gacagagctc agatggccta tgaagaaaac
     1081 cgaaaatgct ctgtgaaaac tgttcaactt gataaacgga ctaaggaaaa aatctgccac
     1141 tacctgactc agaaatactc gcctgagatg atggccaaat ctggaaaggt aactgtttct
     1201 gtgtcctcta tctattactg gattcatcat gggcatctag gagttgggaa agaagccttg
     1261 ctctatccta gaaaagcgaa agctaataag aaacaagcta gtcctaactt taaacctgct
     1321 ggaaagtcaa ttgaggaacg accggagagt atcaataagc gggagaatat cggcgatttt
     1381 gagattgaca cagttattca aacacgagct aaaaacgagt gcctactgac cttaaccgac
     1441 agaaaaagtc gttatcaaat cattcggctt attcctgaca agtcggcttc ttccgtcaat
     1501 catgtcctga gaacaatcct gcaagagtat cagattcact ctatcacggc tgacaacgga
     1561 acagaattta gtcgcttatc tgaggttttt gaccctgatc aaatttacta tgccaaccct
     1621 tatgcctctt gggagagagg gaccaatgag aaccataatc gtttgattcg acgttggtta
     1681 ccaaagggaa gtaaaaatgc gaccaaaaaa caggtcacat tcattgaaaa ttggatcaat
     1741 aactatccta agaaagtatt agattacaaa actcccagag aggtgttata cgctggctaa
     1801 cttggacttg aattttgcct ttggtagaag tgatgacaaa tttgtgataa ttggcgtaca
     1861 ctccattgca aatgatgaga tttagcggta tactgtaagt agctcatttg ggctttttat
     1921 tgtagtttga aatgaactag caccacgggt attatcatat ataagggcac ctctaaaaac
     1981 tccctaaatt tcccaaaaat gagataatag aataaaaagt catgaggaga gctgtcatgc
     2041 atttattcac agacgatgaa aaaatcttgt caaaactatc agagaaaggc aatcccttag
     2101 aacgtttgga tgccgttatg aattggaata tctttcttcc attgttgtca gagttattca
     2161 gtcgtaaaga taaagtcatc agtcgtggcg gtcgtcctca cctagactat ctcatgatgt
     2221 tcaaagtgct cttgcttcaa cgtcttcata acctatctga cgatgccatg gaatatcaac
     2281 tgttggatcg tatatctttt cgtcgttttg ttggttgtca tgaagacact gttcccgatg
     2341 cgaaaactat ctggctctat cgtgagaaat taaccaagtc aggtcgtgaa aaagagttgt
     2401 tcgatttgtt ctatgcccat ctcacagatg aaggggtgat tgcccattca ggtcagattg
     2461 tggatgctac ctttgtcgaa tgccctaaac aacgcaattc acgtgaagac aatcagaaaa
     2521 tcaagaaagg cgaaaagata gaaggttgga ataagactaa acggagccaa aaagacgtag
     2581 atgcgacttg gacacgcaaa ggtaatgtcc gctattttgg ctataaaaac catatttgtg
     2641 tcgatagaaa atcaaaactt atcaaaaatt acgaggtcgc aacagctagt gtacacgact
     2701 ccaatgtcct agctcctctt tgtgatgcca atgaagcggt ttttgatgac agtgcttatg
     2761 ttggaaaatc agtgccagaa ggttgtcgcc accacacgat tcgtcgtgcg tttagaaata
     2821 aaccgttgac cgagactgat aaggtcatta atcgacatat tgccaaagtc cgttgtcgcg
     2881 ttgagcatgt ttttggcttc attgaaatga gcatgaaagg tagcagctgt cgatcaattg
     2941 ggaaggcacg agctaaaacc aatgtcacct taaccaacct gctctacaat atctgtcgtt
     3001 ttgagcaaat caaacgactg ggattgccat cgtgggctta gtgcgcccaa aaataggaaa
     3061 ataagcaaaa agtaagcttc gaaagtgaag cttactggaa ataatgctta caattagggc
     3121 ttacttaaca actacttgaa gtttttagag gtgcccataa gaaaaacagt aacaactctt
     3181 tgctactgtc atccttttca at
//
LOCUS       DASGBY010000161         3200 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.162, whole genome shotgun sequence.
ACCESSION   DASGBY010000161 DASGBY010000000
VERSION     DASGBY010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3200
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.162"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(143..880)
                     /locus_tag="U1396_001866"
     CDS             complement(143..880)
                     /locus_tag="U1396_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343013.1"
                     /translation="MNETRFLELFNDLDKVLRKVCGVADGEYADVGSMLTKAKELTRH
                     NPVEANWDKLYVARQLRNLMVHEKRTGLKEVAQPSQELITVLEKVIAQYQEPITIADY
                     LQKTQKIKPVIFEGKDKLIKALEIVEQEHFSKFPIFSDKVYQGLVSDKGLTNWLAKAS
                     KETGSIREKLVEASLEDVLACEEDSIQVIVLPITAHLYQVINHFEGRKRTTILVSRQA
                     SGKLHSPEDLVGIVTAQDLAEIYGMVD"
     gene            complement(882..1916)
                     /locus_tag="U1396_001867"
     CDS             complement(882..1916)
                     /locus_tag="U1396_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM5343014.1"
                     /translation="MKTLDYIVTLTNTPSPTGFTTDIMNYIKAEVESFGYAASKTAKG
                     GVLVTVPGENDQEHRMVTAHLDTLGAMVRAVKPDGRLKMDLVGGFGYPSIEGENCLIH
                     CAKNGKTFTGTILMHQTSVHVYRDASTAERNQTNMEIRLDEKVTNADETRTLGIEVGD
                     FISFDPRTVVTETGFIKSRHLDDKVSAAILLHLLKVYKEEGVTLPYTTHFYFSNNEEI
                     GYGANSSIPAQVVEYLAVDMGAMGDDQQTDEYTVSICVKDGSGPYHYELRQHLVALAE
                     RDGIPYKLDIYPYYGSDASAAMRAGADVKHALLGAGIESSHSYERTHLDSVVATERMV
                     DAYLKSAMVD"
     gene            1981..2937
                     /locus_tag="U1396_001868"
     CDS             1981..2937
                     /locus_tag="U1396_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     synthetase/biotin operon repressor"
                     /protein_id="HEM5343015.1"
                     /translation="MKTYQKIYLLLKEREDYVSGEDLAQELGISRTSIWKAIRQLETH
                     GLTIEAARNRGYRLAEGDLLLPELISQELQLPVHLNMDSDSTQLDAKQGIESGHTSPA
                     LYLAPYQNKAKGRFGRPFYASKSGGIYMSLRLSPNVPFLEFKPYTILAAAAVVKAIQS
                     LCDLDVQIKWVNDIYLGHKKVAGILTEAISSMENQRVTDVIIGVGINVRIDDFPKELQ
                     QSAGNLFEEQPPFTRNQLITAIWKAFLETDEKELIALYKEKSLVVGQQVSFVENQVEF
                     KGTAIAVTDTGNLVIQLDNGKAKIISSGEISLTSWSASPPNE"
     gene            complement(2903..3091)
                     /locus_tag="U1396_001869"
     CDS             complement(2903..3091)
                     /locus_tag="U1396_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3272 domain-containing protein"
                     /protein_id="HEM5343016.1"
                     /translation="MKLPQFLFLAITTILAVYFMNASILTGDFLIAGIYAFIAYRNLH
                     FAYKVTKFIRLVEKQTKK"
BASE COUNT          938 a          755 c          604 g          903 t
ORIGIN      
        1 attttttcct aaaaaatatt tatattgtga caatgtagaa ttgggactcc taaatatctt
       61 ttatttacga gtttcacaac atattcaagt ctttttcaac acagtaatac accttgataa
      121 tggattaaca agaactattg cttcaatcca ccatcccata aatctctgcc aagtcctggg
      181 ctgtgacaat accaacaaga tcctctggcg aatgaagctt cccactcgcc tgacgactga
      241 ctaggatagt tgtgcgctta cgcccctcaa aatgattaat tacctgataa agatgggctg
      301 ttattggtag aacaattacc tgaatactat cttcctcaca agctagtacg tcttcaagac
      361 tagcctccac caatttttca cgtatagagc ccgtttcctt gcttgccttg gccaaccaat
      421 ttgtcaatcc cttgtcagaa accaggcctt gataaacctt gtcagaaaaa ataggaaatt
      481 tagaaaaatg ctcttgctcc acaatttcta aagcctttat caatttgtcc ttgccctcaa
      541 aaataaccgg cttaattttc tgggtctttt gcaaatagtc ggcaatagta atcggttctt
      601 ggtactgggc tatcactttt tccaaaacag tgatcaattc ctgcgaaggt tgggctactt
      661 ccttcaaacc tgttcgtttc tcatgaacca tgagattacg caactgacga gccacataga
      721 gtttatccca gttcgcctca acgggattat gtcgcgtcaa ttcctttgcc ttggtcaaca
      781 tggaaccaac gtccgcatat tccccatccg caacaccgca caccttacgc aagaccttat
      841 ccaagtcatt gaataactct aaaaaacggg tttcattcat cttaatctac cattgctgat
      901 ttcaaatagg catctaccat ccgctcagtc gcaactacag aatccaaatg ggtccgctcg
      961 taggaatggc tagactcaat gccagcacca agcagtgcat gcttgacatc tgcacctgct
     1021 cgcatagctg ccgaagcatc ggaaccatag taaggataaa tatccagctt ataaggaatt
     1081 ccatctcttt cagccaaggc taccaagtgc tgacgaagtt cataatggta gggacctgag
     1141 ccgtccttga cacagataga aactgtatat tcgtcagttt gctggtcatc tcccattgcc
     1201 cccatatcga ctgccaaata ttcaaccacc tgagcaggaa tgctggagtt ggcaccgtag
     1261 ccaatctctt cgttgtttga aaaatagaaa tgtgtcgtat aaggcagggt cactccttct
     1321 tccttataga ccttcaaaag atgaagcaag atagctgcgg ataccttatc atccaagtga
     1381 cgactcttga taaagccagt ttctgtcacg acggtacgag gatcaaagga gataaaatct
     1441 ccgacttcaa tacccaaggt ccgcgtctcg tccgcattgg tcactttttc gtccaaacga
     1501 atttccatgt tggtctgatt gcgctcagcg gtactggcat cccgatagac atggacagag
     1561 gtctggtgca tgagaatagt acctgtgaaa gtcttgccat ttttagcgca atgaattaag
     1621 cagttttctc cctcaataga agggtatcca aatcctccca ccaaatccat tttaagtcgg
     1681 ccatctggtt tcactgcacg aaccatggcc cccagtgtgt ctaggtgagc agtcaccatg
     1741 cggtgttcct ggtcattttc ccccggaact gtcaccaaaa caccaccttt agcggtctta
     1801 ctagcagcat agccgaaact ttcaacctct gccttgatgt aattcataat atccgtcgta
     1861 aaaccagttg gcgacggagt gttggtcaat gtaacaatgt aatcaagtgt cttcatgaaa
     1921 acctccttat ttgaaactat tatatcacgt tttaggtgaa ttttttgcta taatgaaggt
     1981 atgaaaacct atcagaaaat atatctcctt ttaaaagaga gagaggatta tgtcagcgga
     2041 gaagatttgg cacaggaatt gggcatttca cggacatcca tttggaaggc cattcgccag
     2101 ttagaaacgc atggtttaac tattgaggct gcccgtaatc gtggctacag attagccgaa
     2161 ggcgatttac tcctacccga attaatctct caggagcttc aactacctgt ccatctgaat
     2221 atggatagcg attccaccca actagatgcc aaacaaggta ttgaatcagg tcatactagt
     2281 cctgccctat atttagctcc ctatcagaat aaagccaagg ggcgatttgg gagacctttt
     2341 tatgcatcca agtcaggtgg catttatatg tcgcttcgtc tctctcccaa tgttcccttt
     2401 ctagaattta agccctacac cattttagct gcagctgctg ttgtgaaggc cattcaatct
     2461 ctttgcgact tggacgtcca aatcaagtgg gtcaatgaca tctatctcgg acacaaaaag
     2521 gtcgctggca tcctcactga ggctatttct tctatggaaa accaacgggt aaccgatgtc
     2581 attatcggtg tcggcatcaa tgtccgcata gacgatttcc ctaaggaatt acaacaatct
     2641 gctggaaacc ttttcgagga acaaccacca tttacccgca atcaactcat tactgccatc
     2701 tggaaagcct tcttagaaac cgatgagaag gaactaattg ccctttacaa agaaaaatca
     2761 cttgtcgttg gccaacaagt gagctttgta gaaaatcaag ttgaatttaa ggggactgcc
     2821 atcgctgtta ctgatacagg aaacctggtt atccagttag ataacggcaa agcaaaaatt
     2881 atctccagcg gagaaatcag ccttacttct tggtctgctt ctccaccaaa cgaataaatt
     2941 tagtcacctt gtaagcaaaa tgaagattcc gataggcgat aaaggcgtag atacctgcaa
     3001 tcaagaaatc tcctgtcaaa atcgatgcat tcataaaata aacagctaaa atagttgtaa
     3061 tggctaaaaa aagaaattgt ggaagtttca taaaatagat tataccaaaa attcagtcaa
     3121 ctggctgaat ttttatatgc tttcttgata ggtttcgatt cttttctaaa caagaaaaca
     3181 ccaatctaat tgggtgcttt
//
LOCUS       DASGBY010000162         3124 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.163, whole genome shotgun sequence.
ACCESSION   DASGBY010000162 DASGBY010000000
VERSION     DASGBY010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.163"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            47..1393
                     /gene="gdhA"
                     /locus_tag="U1396_001870"
     CDS             47..1393
                     /gene="gdhA"
                     /locus_tag="U1396_001870"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEM5343017.1"
                     /translation="MSNAKAYIQASFEAVKARNPHETEFLQAVEELFSTLEPVFEAHP
                     EYIEENILARIVEPERIISFRVPWTDKDGNVQVNRGYRVQFNSAVGPYKGGLRFHPTV
                     NQSILKFLGFEQIFKNVLTGLPIGGGKGGSDFDPKGKTDAEIMRFCQSFMTELQKHIG
                     PSLDVPAGDIGVGGREIGYMYGQYKRLRQFDAGVLTGKPLGFGGSLIRPEATGYGLVY
                     FTDNMLAANGKSFKDQTVLISGSGNVAQYAVQKATELGAKVISVSDSNGYIIDETGID
                     FDLLVDIKEKRRARLTEYAAEKATAKYFEGSVWNYDGKADIALPCATQNEINGEQAAA
                     LVKNGVYCVAEGANMPSDLDAIKVYKENGVLYGLAKAANAGGVAVSALEMSQNSLRLS
                     WTREEVDGRLKDIMANIFNTAKETAEKYDLGTDYLAGANIAAFEQIADSMIAQGLV"
     gene            complement(1628..2215)
                     /locus_tag="U1396_001871"
     CDS             complement(1628..2215)
                     /locus_tag="U1396_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HEM5343018.1"
                     /translation="MQTKDFVVENGQMYYKKKPLHKQPLFWTTIAGAILSFILGVTCF
                     IFMVGLSAANFDNWDTGSDGYIDETVEYTEYQVGDSVDFSDGLHVTVTSMGKDDSIEL
                     VDSYYSTAYVVEMEVENSTAKELYFDEYYFSLMDPVSQIPFTLDLRTYDVNLVEKLKP
                     GEKVQVKLIYGIDNETNFGFTYEDAMWTELVAEGI"
     gene            complement(2226..3074)
                     /locus_tag="U1396_001872"
     CDS             complement(2226..3074)
                     /locus_tag="U1396_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEM5343019.1"
                     /translation="MNDFITKYLSQFNIEAIVTAGLNKVLSLVLLFVAFYIIKKIAKA
                     SVKKVLVPSLKVSTQDIGRQKTISRLVESILNYLLYFILIYCILSILGLPVSSLLAGA
                     GIAGVAVGLGAQGFLSDLVNGFFILIERQFDVGDVVKLTNGPITISGTIVSMGIRTTQ
                     VRDADGTLHFIPNRNILVVSNQSRGDMRAQIDIPLKFNTDLEQVYRVIEEVNLREISN
                     FDQITGVTVLGPQNAISGQFVFRVNLFVANGQQNKIYHQFFGFYQDALRQAGIDLPSS
                     GPTVLK"
BASE COUNT          967 a          686 c          617 g          854 t
ORIGIN      
        1 aaattgtcag acaatttaat aaataaaaaa gaaatcaggt gatcccatgt caaatgccaa
       61 agcttacatc caagcttctt ttgaagcagt caaagcccgc aacccacatg aaacagaatt
      121 cctccaagct gtagaagagc tcttctctac acttgagcct gtttttgaag cacacccaga
      181 atacatcgaa gaaaacatct tggcccgtat tgttgagcct gagcgtatca tcagcttccg
      241 tgttccatgg acagataaag atggaaatgt ccaagtcaac cgtggctacc gtgttcagtt
      301 caactcagct gtaggtcctt acaaaggcgg tcttcgcttc cacccaactg taaaccaatc
      361 catcttgaag ttcctcggtt ttgagcaaat cttcaaaaac gtcttgactg gtcttccaat
      421 cggcggtggt aaaggtggtt cagactttga tccaaaagga aaaactgatg ctgaaatcat
      481 gcgcttctgc caaagcttca tgactgaatt gcaaaaacac atcggacctt cacttgacgt
      541 ccctgctggt gacatcggtg tcggtggtcg tgagattggt tacatgtacg gtcaatacaa
      601 acgcctccgc cagtttgatg caggtgtctt gactggtaaa cctcttggct ttggtggttc
      661 attgatccgc ccagaagcaa ctggttacgg tttggtttac ttcactgata acatgttggc
      721 agcaaacggt aaatccttca aagaccaaac tgtccttatc tctggttctg gtaacgttgc
      781 ccaatatgct gttcaaaaag cgactgaact tggtgcaaaa gtcatctctg tttcagactc
      841 aaatggttac atcattgacg aaactggtat cgacttcgac ctcttggtgg acatcaaaga
      901 aaaacgccgc gctcgtttga cagaatacgc tgcagaaaaa gcaactgcta agtacttcga
      961 aggttctgta tggaactacg acggcaaggc tgatattgcc cttccatgtg cgactcaaaa
     1021 cgaaatcaac ggtgagcaag ctgctgccct tgtgaaaaat ggcgtttact gtgtggctga
     1081 aggtgccaac atgccatctg acctggatgc tatcaaagtt tacaaagaaa atggcgttct
     1141 ttacggtctt gcaaaagctg ccaacgctgg tggtgtagcc gtatctgccc ttgaaatgag
     1201 ccaaaacagc cttcgcttgt catggactcg tgaagaagta gacggccgtc ttaaagacat
     1261 catggcaaat atcttcaaca cagccaaaga aactgctgaa aaatacgacc ttggtacaga
     1321 ctaccttgcc ggtgctaaca tcgcagcctt tgaacaaatt gcggatagca tgattgccca
     1381 aggtttggta taagcttact tttagtttac taaactataa taaaaacgcc cccaaaattg
     1441 acgtgctaat tttgggggta tttttcatta aaagaagagg agaacagtgg ataaacatgt
     1501 tctccttttt aaaatgtaaa aataacagat aagtcggata tagtacaatt accaagccga
     1561 acaatctgaa ccaaggggcg tataaacccg caaaattgtg caatatttaa aactttttct
     1621 acagcaatta gataccttct gcgactaatt ccgtccacat ggcatcttcg taggtaaaac
     1681 caaagtttgt ttcattatct ataccgtaga taagttttac ttgtactttc tctcctggct
     1741 tcagcttttc aactagattc acatcatagg tccgcaaatc cagggtaaag ggaatctgac
     1801 taacgggatc catgagactg aaatagtatt catcaaaata gagctctttt gcggtcgaat
     1861 tttcaacttc catttcaaca acataagctg tgctgtagta gctatccact agttctatgc
     1921 tatcgtcttt gcccatagat gttactgtta catgaagacc atcagaaaaa tcaactgagt
     1981 caccaacttg atactccgtg tattccacag tctcatcaat gtatccgtca ctacctgtat
     2041 cccaattatc aaaatttgct gcacttagac cgaccataaa aataaaacag gttactccta
     2101 ggatgaagga gagaatggca ccagcaatgg ttgtccaaaa gagaggctgt ttgtgcaagg
     2161 gtttcttctt ataatacatc tgcccatttt caacgacaaa atcttttgtt tgcataataa
     2221 actccttatt ttaaaacagt tggcccactt gaaggtaaat ctattcctgc ttgacgcaga
     2281 gcatcttgat aaaaaccaaa gaattgatga tagatcttgt tctgttgacc gttggctacg
     2341 aaaagattaa cacgaaatac aaactgtccc gaaatagcgt tttggggacc taatacagtc
     2401 acacctgtaa tctggtcaaa attgctgatt tctctcaaat tgacctcttc tattacgcga
     2461 tagacttgct ccaaatcggt attaaatttg agcggaatat cgatttgagc acgcatgtcc
     2521 cctcttgact ggttggatac cactagaatg ttgcgattgg gaataaaatg caatgtgcca
     2581 tctgcatcac gtacttgtgt tgttcggatt cccatgctaa cgatggttcc tgaaatggta
     2641 atgggcccgt tggttaactt aaccacatct ccgacgtcaa actgtcgttc aattaagata
     2701 aagaatccat tgaccaagtc tgagagaaaa ccttgtgcgc ccagcccaac agctacccca
     2761 gcaatcccgg ctcctgcaag aagactggat accggtaaac cgaggatact caaaatacag
     2821 tagataagga taaagtagag taggtaattt aagatgcttt ccaccagacg actgatggtc
     2881 ttctgacgac caatgtcttg tgtagatacc tttagagagg gaaccaaaac ctttttcaca
     2941 gaagctttgg ctatcttctt gataatgtaa aatgcaacaa agagtaaaac aagcgataaa
     3001 accttattta gacccgctgt cacaatggcc tcaatattaa attgagacaa atacttggta
     3061 ataaaatcat tcatgagata attatagcag aaaacatcct aaaaaaacaa aaagacagcc
     3121 aagt
//
LOCUS       DASGBY010000163         3110 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.164, whole genome shotgun sequence.
ACCESSION   DASGBY010000163 DASGBY010000000
VERSION     DASGBY010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3110
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.164"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(607..1455)
                     /locus_tag="U1396_001873"
     CDS             complement(607..1455)
                     /locus_tag="U1396_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="HEM5343020.1"
                     /translation="MTVIDGKALGVKLQAALAEKTARLKEEKGVVPGLVVILVGENPA
                     SQVYVRNKERSALAAGFKSEVVRVPDTISESDLLDLIERYNQDDEWHGILVQLPLPAH
                     ISEEKVLLAIDPDKDVDGFHPTNMGKFWSGHPVMIPSTPAGIMEMFKEYQIELEGKSA
                     LVIGRSNIVGKPMAQLLLDANATVTIAHSRTKNLPELARQADILVVAIGRGHFVTKEF
                     VKPGAVVIDVGMNRDENGKLIGDVKYDEVSEVASYITPVPGGVGPMTITMLMEQTYEA
                     CVRSAK"
     gene            complement(1585..2319)
                     /locus_tag="U1396_001874"
     CDS             complement(1585..2319)
                     /locus_tag="U1396_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019805208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5343021.1"
                     /translation="MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGK
                     STFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMREKMGMVFQQFNLFPNMTVLDNI
                     TLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
                     VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGII
                     VEDGTPEEVFEHTKEERTKDFLSKVL"
     gene            complement(2312..3001)
                     /locus_tag="U1396_001875"
     CDS             complement(2312..3001)
                     /locus_tag="U1396_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5343022.1"
                     /translation="MNFSFLPEYWAYFNYGAIVTLIIAFFSVFFGSILGVLLAFAQRS
                     KYKVLAWTANIYVWIFRGTPMIVQIMIAFAMTHFVAPTFQLGILTVDLTRLIPGIIVI
                     SMNSGAYVSETVRAGINAVPKGQLEAAYSLGIRPKQAMRYVIMPQAIKNILPALGNEF
                     VTIVKDSSLLSTIGVMELWNGAQTVQSTSYIPLTPLVFAASYYLIMTTVLTVIIQSFE
                     KKLNKGGQFHV"
BASE COUNT          978 a          716 c          506 g          910 t
ORIGIN      
        1 caaatcaagt caacaacgtc tgattttgat tttcgaagag tataggcaat aagtcttcat
       61 tcgcagttgt tgagctgaaa taatctgtct ccaaacgttt ttactacact gggatgttgt
      121 tcaaactttg agaaatagta ctgtttttta tacagattca tttttgcata caaaaaaacc
      181 tgatcacacg atcaggcttt tcaggagatt atgaaaaata tttaggattg ggtatagtat
      241 aaccaatatt actaaaagtc acatccgtct taagactgat ttattgaata tgaccaataa
      301 aataagtagt gtcgtttaaa aatagactga ttcatacggg gactgcactc attactgtta
      361 gctaccaaaa ctacaagcat aatttaagaa cctgtattca cagttcaacg cttctattct
      421 aaggctagtt tttaagctac tcatcattag tttttttcaa aatacaatca atatcccgca
      481 aaaaaattac cttgattagc taaatctgtc tcttaatatg agtacttcgc ttgtaaatac
      541 aggttctaag aacagggctt taccaaagca ggcatggata tatttatttt tattaaactc
      601 tctatcttat tttgcgcttc tgacacaagc ttcataggtc tgttccatca acatggtaat
      661 agtcatcgga ccaacaccac ctggaactgg ggtaatataa cttgccactt ctgatacctc
      721 atcgtatttg acatcaccga ttagcttgcc attttcatca cgattcatac caacatcaat
      781 caccacggca cctggtttaa caaattcctt ggtcacaaaa tgaccacgac caatggcaac
      841 aacaagaata tcggcctgac gagcaagctc tggcaagttt ttggtgcgag aatgcgcaat
      901 cgttacagta gcattggcat ccaatagcag ctgtgccatt ggtttaccaa caatattaga
      961 acgaccaata actaaagctg acttcccttc cagctcaatc tgatattcct tgaacatttc
     1021 cataattcct gctggggtag atggaatcat aacaggatga cctgaccaga atttccccat
     1081 attagtcgga tgaaaaccat ccacatcctt atctgggtca atggccaaca agaccttctc
     1141 ctcgctgatg tgggctggta agggcaattg caccaaaata ccatgccatt catcatcctg
     1201 attatagcgc tcaatcaaat ccaacaagtc tgactcagaa atcgtatctg gaacgcgaac
     1261 aacctcactc ttgaatccag cagctagagc tgaccgctcc ttattccgta catagacctg
     1321 actagcagga ttttcgccaa ctaaaataac tacaagacct ggtaccaccc ccttttcttc
     1381 ttttaatcga gcagttttct ccgccaaagc agcctgcaat tttacaccta gtgctttccc
     1441 atcaatgact gtcataccta cactcctttt gttttttcta ttatacccta aaattctccg
     1501 actgactata cttgtacaaa gtagactata gcatatagca aaaaactccg aacaatgtcg
     1561 gagtcgtact tatttgttca tttattacaa gaccttagac aagaaatcct tggtccgttc
     1621 ttccttggta tgttcaaaga cttcttcagg cgttccatcc tccacgatga taccgccatc
     1681 cataaagata accctgtcag ctacctcacg cgcaaatccc atctcatgag tcacgataac
     1741 catggtcatc cccgacttgg ccaaatcctg cattacagca agaacttcac caaccatttc
     1801 agggtctagt gcagaggtcg gttcatcaaa aagcaggaca tctgggtcca tggccagacc
     1861 acgtgcaata gcgatccgtt gttgctgacc acctgaaagg ctttgtggat aggcatttgc
     1921 cttatctggc aatcctacct tttcaagtaa ttccttagcc ttcttctcag cctcatcctt
     1981 tgcaattccc tttgtcttaa taggtgataa agtaatgtta tctaataccg tcatatttgg
     2041 aaaaaggttg aactgttgaa aaaccattcc catcttttca cgcatcttga aaatatcatt
     2101 tgacttgtca gtaatatcaa caccttcaaa tgtaacagtt cccttggttg gcacttctaa
     2161 gaggttcatt gtacgtaaga aagtcgattt ccctgaccct gatggaccga taataacgac
     2221 aacctgacct tgttgaatat ctaaatcaat tccttttaga acctcattct ttccgaagta
     2281 cttatgtaaa tccttgatag aaataatcgc attagacatg gaactgccct cccttgttca
     2341 actttttctc aaacgactga ataatcactg ttagcaccgt tgtcataatt agataatagc
     2401 tcgctgcaaa tacaagtggt gttaaaggaa tataagaagt ggattgaact gtctgagcac
     2461 cgttccataa ttccatcaca ccgatggttg acaaaagtga actatcctta acaatagtca
     2521 cgaattcatt tcccaaggct ggaagaatat tcttgatagc ctgcggcatg ataacgtaac
     2581 gcatcgcctg ctttggtcta ataccaagcg aataagctgc ttccagctgt ccttttggta
     2641 cagcattaat acctgcacga acagtttcag atacataggc acccgagttc atcgaaataa
     2701 caatgatacc tggaatcaag cgcgtcaaat caaccgtcaa aattcctagc tgaaaagttg
     2761 gtgctacaaa atgtgtcatc gcaaaagcaa tcataatctg gacaatcatc ggtgtcccac
     2821 ggaaaatcca gacatagata ttggcagtcc aagctaaaac tttatactta ctacgctgag
     2881 caaaggcaag taacacacct aaaatactac caaaaaatac tgagaaaaat gcaataatga
     2941 gggtaacaat tgccccataa ttaaaataag cccaatactc aggcaaaaaa gaaaaattca
     3001 ttcatcttac tccaattctg tcatttagag tctattatac catttttgaa tatttatgca
     3061 atacttttgt ttataatatt caatttacac aagaaaaaag cacccttagg
//
LOCUS       DASGBY010000164         3108 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.165, whole genome shotgun sequence.
ACCESSION   DASGBY010000164 DASGBY010000000
VERSION     DASGBY010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.165"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            174..890
                     /locus_tag="U1396_001876"
                     /pseudo
     CDS             174..890
                     /locus_tag="U1396_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921854.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
     gene            1038..2213
                     /locus_tag="U1396_001877"
                     /pseudo
     CDS             1038..2213
                     /locus_tag="U1396_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636218.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
     gene            complement(2685..2834)
                     /gene="rpmG"
                     /locus_tag="U1396_001878"
     CDS             complement(2685..2834)
                     /gene="rpmG"
                     /locus_tag="U1396_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5343023.1"
                     /translation="MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVI
                     FTEVK"
     gene            complement(2850..3032)
                     /gene="rpmF"
                     /locus_tag="U1396_001879"
     CDS             complement(2850..3032)
                     /gene="rpmF"
                     /locus_tag="U1396_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM5343024.1"
                     /translation="MAVPARRTSKAKKNKRRTHYKVAAPTVKFDETTGDYSRSHRVSL
                     KGYYKGRKIAKAASAE"
BASE COUNT         1012 a          596 c          669 g          831 t
ORIGIN      
        1 gagcttttat gtaagagata gtttttcgct aatcaagtta attttttgag ggaatgctgg
       61 ctgtattttg aaaaaacgaa cgatgagtag cttaaaaatg ccttagatgg gagtgctaac
      121 ctgtaaatac aggttcttag taaattgaag taaatagagt aaaggagcac attatgagca
      181 aacaaaaagt tgtgacaaat ctattgctta gtacagctgt actaggtggt tttctaatat
      241 gtcacgtatc atctgtaagc gcagaaacag gcaatcttca agaaatacct actgaatctg
      301 ctacggttag ctcagaaaat caaactgcga ccgcagtcga tggaatttca cctacggata
      361 accaattacc tacgtcagaa gaaggtgatg aacaggctcc agaagaaaaa ctagtttcta
      421 gcgattctac gagagaagaa agtgctacgc aggtagcgac ggatccggat gcgccatctc
      481 aatcattaag tgtgtcaggg gcggaaattt caacggcaga ttcaaatatt caacaagccg
      541 aagagaaact gattcaagaa tcgaattatc atagatttga cactcatcaa ggtgaacaga
      601 ttaggaaggc agtatctata gaaaaaatat cggcagataa tgacgaaatt aagtggaaag
      661 taacttttga tagaaaaaat tggaccttta gtggagaggg gagtggctat tactttattc
      721 ttctaaaagg cttacaatta accaaaatta ttgatagcca gtctgaagag gatattttca
      781 ataagttccc taaggatgtc aatagtgagg caaattctgg cgggcagccg tatcgctttt
      841 ttagtagaga aaaaaatgct aataatgatg agcgtagttt tgaaagtcag tggggttggt
      901 ctgttggacg tgtaggagga gagctagaaa aatggaagga agaaagttcc agcgtctatt
      961 ttctacaagt acagcgagat tccgttgcta aagaaaaagc gacatatgaa ctgacggcac
     1021 aggtgacaaa tcgagaaatg cagactttcc cggttttagc tgtggtgaag aattttaaag
     1081 agcgaatatt tttctccaga gatgagatta cttctgctgc tggtttgaga ttaaaggtat
     1141 cggaaagtgc taagccaaat aatgaaggga ttactattat cggagattca tctccagaaa
     1201 gcgacaggac tcctgaaccg cggggagata ggacttcgga tatagttgta ccaaaggcag
     1261 atgttccaaa agttgagcaa ccaaaaccaa aggaccctga agttcaactg cctgctccta
     1321 aggctccgga atctgtgcca ccaaaagtaa tgcctccagc acccaaagtt ccagacgtta
     1381 agacgcccaa agaggcgcct ctgccaccaa aaactccgga agttgaggtt ccaaaagtaa
     1441 tgcctccgac accgaaggtt ccagatgtta agacgccaaa agttgagtac cctgatacag
     1501 atgctcctgt gattgagtca ccaaaagctc ctgaaactga acgaccagaa gtcttaccac
     1561 cgacgccaaa agtcccagaa gttgaggttc cgaaagtaat tccaccgacc tcaaaagttc
     1621 cagaagctga gctaccgaaa gttgagcagc caaaaccgaa ggttccagaa gttcaccttc
     1681 ctgctcctaa gtctccggaa actgagccac ccaaagtaat gtccccagca cccaaagttc
     1741 cagacgttaa gacgccaaaa taggcgcctc tgccaccaaa aactccgggc gttgaggttc
     1801 cgaaagtaac accaccgacc tcgaaagttc cagaagttca ccttcctgct cctaagtctc
     1861 cagaagttga ggttccgaaa gtaacaccac caacctcaaa agttccagac gttaagacgc
     1921 caaaaactcc ggaagttgcg cacccagaag ttgagaaacc cgccggaatc caaccagaaa
     1981 agggtcaacc tgaggttaat aaacccaata ttatccatcc ggaggtgctt caatccgaag
     2041 ttaagaaaac ggaatctgga gtttcaatgg ctccaaaggt aggaatacaa aaagagactt
     2101 taccaaatac gggtgaaaca agtaataccc tagtatggct aggtggtgct ctagctgccc
     2161 ttgcatcaag tttgtatctt ttcaaacaac acaggcaaag agaagaggag tgattttacg
     2221 ctaatactat agtttttggt acaccaataa ggcttattta ccatggacta agaaaattta
     2281 gaacagttgt aaatagaaaa cgttccaaaa tctgaactgc accccaaaag ttagaggtta
     2341 actctagttt ttgaggtgct tttcttgtaa ggtcaagaca caaagacaag attgaaattt
     2401 atctcttgca atgatatgaa ggagttggtt ctatattttg ttttatcaat actagtttga
     2461 atgttattcg agaatttgta ggacattctg aggatggtaa ggagatagtg aaaatctatc
     2521 ttcatgtaat acaaaaagga aaacgtaaga ttgaacaggc tatgctagat ttagcagaaa
     2581 ttatcatttg atttatttta atcagttaaa attcagttat tttgtcaaaa acaaaagaaa
     2641 aaagcctttg aaacgttgat ttcataggct ttctgtatgt tgtcttattt tacctcagta
     2701 aaaatcacgt gcttacgcaa ttttggtgag tattttttca attgaagacg gtctggagtg
     2761 ttacgtttgt tttttgaagt aaggtacaaa cgctcaccag attctttgtg ttcaagtgta
     2821 atatttacgc gcatggtatc tcccttctat tattcagctg aagcagcctt ggcaatttta
     2881 cgtcctttgt agtatccttt caaagataca cggtgtgaac gtgagtaatc tccagtagtt
     2941 tcatcaaatt tcacagttgg agctgctact ttatagtgag tacgacgttt gtttttcttc
     3001 gcttttgaag tgcgacgtgc aggtactgcc atttctttct tcctccatta aatgtcaggg
     3061 ccaagccctt ttttaatcta aaaatagtgc gtatgacttt cgtcaact
//
LOCUS       DASGBY010000165         2942 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.166, whole genome shotgun sequence.
ACCESSION   DASGBY010000165 DASGBY010000000
VERSION     DASGBY010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.166"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(20..1831)
                     /gene="glmS"
                     /locus_tag="U1396_001880"
     CDS             complement(20..1831)
                     /gene="glmS"
                     /locus_tag="U1396_001880"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEM5343025.1"
                     /translation="MCGIVGVVGNTNATDILIQGLEKLEYRGYDSAGIFVTGGEQAHL
                     VKAVGRIAELSAKVGDKTEGTTGIGHTRWATHGKPTENNAHPHTSQTAGHILVHNGVI
                     ENYAEIKEEYLAGHDLKGQTDTEIAVHLIGQFAEEGLSTLEAFKKALKIIQGSYAFAL
                     IDATDADTIYVAKNKSPLLIGLGDGYNMVCSDAMAMIRETSEYMEIHDKELVIVKKDS
                     VEVMDYDGNEIERGSYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLISAYTNEAGQ
                     VTVDADIIKAVQEADRIYILAAGTSYHAGFASKDFLEKLTDTPVELGISSEWGYNMPL
                     LSKKPLFVMISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREATYTMLLHAGP
                     EIAVASTKAYTAQIATLAILAKAVGDANGNAYAKEFDLVHELSIVAQSIEASLSEKDV
                     IAEKVEKLLSTTRNAFYIGRGSDYYVSMEASLKLKEISYIQCEGFAAGELKHGTISLI
                     EDGVPVLALISNHPHLASHTRGNIQEVVARGANVLTIVDEAVAKEEDDITVTTVHPFL
                     SAIAMVVPTQLIAYYATLQRGLDVDKPRNLAKSVTVE"
     gene            2138..>2942
                     /locus_tag="U1396_001881"
     CDS             2138..>2942
                     /locus_tag="U1396_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5343026.1"
                     /translation="MEQLYHTTELIGIKDKNIKILFILKHQTHLEIRAKLDYDSPGCP
                     HCQGKCIKYDFQKSSKIPILDCQGFPTLLLLKKRRFQCKSCQKVTVAETALVKKNCQI
                     SLPIWEKVTQLHTENMTNIAIARRLHISVSVVQRKLAQFQFEHDFTKLPKVLSWDEFS
                     RNKGKLAFIAQNFETRSIVTILDNNRQTTIKNYFYKYPRAVRETVEVVTVDMSGSYIP
                     ITKKLFPRAKIVLDRFHIIQHLSRAMMTTRIDIMKTFDTRSLPYRSMKNH"
BASE COUNT          885 a          672 c          533 g          852 t
ORIGIN      
        1 atccacgcct tccttcttct tattcaacag taacagactt agccaagtta cgtggtttat
       61 caacatccaa accgcgttgc aatgtcgcat agtaagcgat caactgtgtc ggaaccacca
      121 tagcaatcgc tgacaagaac ggatgaacag ttgtaacagt gatgtcatcc tcttccttag
      181 ctactgcttc atctacaatt gtcaagacat tggcaccacg cgccactact tcctgaatat
      241 tgcctcgagt atggcttgca aggtgcggat gatttgaaat caaggccaag acaggaacac
      301 cgtcttcaat caatgaaatg gtaccgtgtt tcaattcacc tgccgcaaag ccttcacatt
      361 ggatgtatga aatttctttc aatttcaagc tggcttccat agaaacgtag tagtcactac
      421 cacgaccgat atagaatgcg ttgcgagtgg ttgataagag tttttcaact ttttcagcaa
      481 tcacatcttt ttctgacaag ctggcctcga tagattgagc tacgatggac aattcatgca
      541 ccaagtcaaa ttctttcgcg taggcattgc cattggcatc accgacagcc ttagccaaga
      601 ttgccaaagt cgcaatctgt gcagtgtagg cttttgtaga agctaccgca atttctggtc
      661 ctgcatggag caacatggtg taagttgcct cacgagatag ggtagaacca ggaacgttgg
      721 ttacagtcaa acttggaatg cccatttcat tagctttaac caatacctga cggctatcag
      781 cagtttcacc tgactggcta atcatgacaa agagtggctt tttgctcaaa agcggcatat
      841 tgtagcccca ctcagatgaa attcccaact ctactggtgt atctgtcaat ttttccaaga
      901 agtcttttga ggcaaatcct gcgtgatagg aagttccagc agccaagata tagatgcggt
      961 cagcttcttg tactgcctta ataatatccg cgtcaactgt tacctgacca gcttcatttg
     1021 tataggcgct aatcaattta cgcataacag ttggttgctc atcaatttcc ttgagcatgt
     1081 agtatggata agttccctta ccaatatctg acagatcaag ctcagctgta tagctaccac
     1141 gttcaatctc atttccatca tagtccatga cttcaacact atcttttttc acgataacca
     1201 attccttatc gtgaatttcc atgtattcac ttgtctcacg aatcatagcc atagcatctg
     1261 agcagaccat gttatagcca tcaccaagac caatcaaaag tggagattta tttttggcaa
     1321 cgtagattgt atctgcatcc gtagcatcaa tcaaagcaaa ggcatatgaa ccttgaataa
     1381 tcttcaatgc ttttttaaag gcttctagag ttgacaaacc ttcttctgca aattgaccaa
     1441 tcaagtgtac agcaatttct gtatctgtct gccctttcaa gtcatgacct gcaagatact
     1501 cttccttgat ttctgcgtag ttttcaatca caccgttgtg aacaaggata tgtccagcag
     1561 tttgagaagt gtgagggtga gcattgttct cagttggctt accatgagtc gcccaacgag
     1621 tatgaccgat ccctgttgtc ccttcagtct tatcgccaac ttttgcagac aattctgcaa
     1681 tgcgaccaac agctttcaca agatgagctt gctcaccacc cgtcacaaaa atacctgctg
     1741 aatcataacc acggtattct aatttttcaa gtccttgaat caaaatatca gttgcgtttg
     1801 tatttcctac aacaccaacg attccacaca tacatatcac ctacgatgtt tgtcaacatc
     1861 ggctttcatt tctttaaaaa ttggtctagt ctaatttgta tctaaaaaga ccagtgaaat
     1921 cagtatataa caagttttta tccttgtcaa cattttaatt ggtctagtct aatttcaaaa
     1981 tacagttcca gtcatctcaa cacaattaaa aaaaggctct ataatttctg tagtgggtaa
     2041 atccactgta gagattatgg aggctttttg agtatataca aaaagtccca tatgacctat
     2101 aatgaaaagc aaccacactc acattagaaa gactcatatg gaacaacttt atcataccac
     2161 agaactaatt ggaatcaaag acaaaaacat caaaattctc ttcattttga aacatcagac
     2221 ccatctagaa atcagggcaa agctagatta cgacagccct ggttgtcctc attgccaagg
     2281 aaagtgtatc aagtacgact ttcaaaagtc gtcaaagatt ccgattttgg attgccaggg
     2341 ctttccaacc ctccttttgc ttaagaaacg gcggtttcaa tgcaaatctt gccaaaaagt
     2401 gactgtagct gagacagctc tagtcaagaa aaactgtcag atttccctac ctatttggga
     2461 gaaagtgaca caactccata cagaaaacat gactaatata gccatcgcta ggagattaca
     2521 tatctccgta tcggtcgtcc agaggaaact ggctcagttt caatttgagc atgattttac
     2581 gaaattacca aaagtcttga gttgggatga atttagtcgg aacaagggaa aactcgcctt
     2641 tattgctcag aattttgaga cgagatcgat tgtgaccatt cttgacaaca accgccaaac
     2701 caccatcaag aactatttct acaagtatcc tagggcggtc agagaaactg tcgaggtcgt
     2761 aacagtggac atgtcgggta gctatattcc catcaccaaa aaactatttc caagagctaa
     2821 aattgtcctt gatagatttc acattatcca acacctgagc cgtgctatga tgacgactag
     2881 aattgatatt atgaagactt tcgatacgcg ttccctacct tatcgatcca tgaaaaatca
     2941 ct
//
LOCUS       DASGBY010000166         2863 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.167, whole genome shotgun sequence.
ACCESSION   DASGBY010000166 DASGBY010000000
VERSION     DASGBY010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.167"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..1525)
                     /locus_tag="U1396_001882"
     CDS             complement(<1..1525)
                     /locus_tag="U1396_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4838 domain-containing protein"
                     /protein_id="HEM5343027.1"
                     /translation="MKLTIFDKVQNKTSQFAIDELTYYLKAIFDFELGRTTVEEDANI
                     LLSKEYFDNNDTIGIEMKNGNAILSGNSDISILIAVYRLLSEFGAVFTRPGRKHELIP
                     SLSISDWNEKELSIHETASYKHRGVCIEGADSYQNIKEFLDWLPKINMNSFFIQFENP
                     YSFLKRWYEHEFNPYADKEDFNTEIAQQMSDLLDEELSKRGLIHHRVGHGWTGEVLGY
                     SSKYGWESGLILPEEKKPLVAELNGKRELFNTAPILTSLCFSNPDVGERMCELIVNYA
                     KERKDVDYLHVWLSDARNNICECEKCKEEIPSDQYVRILNQLDRKLGEEGLNTKICFL
                     LYHELLFAPKHEVLENPERFTMMFAPITRTFEMSYADVDYENNVPLPNEYTRNNIVLP
                     NSLEENLSYLFSWQKVFNGDSFVYDYPLGRAHYGDLGYMKISKVIFRDVVYLKKLGLN
                     GYISCQELRAGFPHNFPNFVMGQMLWNRNLEYDELKALYFSSLYGSEWKSVVTYLEKL
                     "
     gene            complement(1530..2858)
                     /locus_tag="U1396_001883"
     CDS             complement(1530..2858)
                     /locus_tag="U1396_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5343028.1"
                     /translation="MNRLMHFLEHKLAPFGTKVGNQRHLKAVRDGFMMAMPLVLVGSF
                     FLLLISWPDQASGGFSVVGFLEQIGLLGILNRLNQSTMAIISLIATFGIAYRLSESYE
                     TDGPSAGVIALSSFILLAPRFSTIVFNESGEQINQVFAGAIPFGSLNASALFVAIAIG
                     LVSAEIYRFFIQRGITIKMPKNVPDVVGKSFAALLPALTTLIFWACVFQGLEAAGVEG
                     GLGAVLGLIVGKPLGLIAGSLGGMVLVVLVNSLFWFTGVNGGQVLNAFVDPVWLQFTE
                     ANQVAAAAGEKLPHIITLPFKDLFVFMGGGGATVGLAICLLVFSKSRTFKSLGRISFI
                     PSLFNINTAILFSFPTVLNPIMMIPFILTPTVNAIITYFAMATGLVPMTTGVVLPWTM
                     PPILGGFLATGGSVQGAILQIILIGVSFIIYYPFFKVADNKNLELEASGE"
BASE COUNT          967 a          590 c          434 g          872 t
ORIGIN      
        1 ataatttttc taagtacgtt acaacacttt tccattcaga accatataag gaactgaaat
       61 agagcgcttt caattcatcg tactctaaat ttctgttcca caacatttga cccatcacaa
      121 agttagggaa gttatgaggg aaacctgcgc gtaactcttg gcaactaata taaccattta
      181 aacccaattt tttaagatat acgacatctc taaagattac tttactgatc ttcatatatc
      241 ctaaatcacc ataatgtgcc cgaccaagtg ggtaatcata gacaaaacta tctccattaa
      301 acactttttg ccaactaaat aaatatgaga gattttcttc aagtgagtta ggaagaacaa
      361 tattatttct tgtatactca tttggaagtg ggacattgtt ttcatagtct acatcagcat
      421 aactcatttc gaaagttctg gtaataggcg caaacatcat tgtgaaacgt tcaggattct
      481 ctaaaacttc atgctttggt gcaaaaagca attcatgata aagtaaaaaa caaatctttg
      541 tattaagccc ctcttcacct aatttccgat ctaattgatt caaaattcgt acatactgat
      601 ctgagggtat ttcttcttta catttttcac attcacaaat attgttccgt gcatcggata
      661 accaaacatg taagtagtct acatctttcc tttcctttgc atagtttaca attagttcac
      721 acattctttc accaacatct ggatttgaga aacatagact agttagtatt ggcgctgtat
      781 taaataactc acgttttcca tttaattcag cgactagggg tttcttttct tcaggtagta
      841 ttaacccaga ttcccatccg tacttagatg aatatccaag tacttcacca gtccaaccat
      901 gtccaacacg atgatgtatt aaacctcgtt ttgataattc ttcatctaaa aggtcgctca
      961 tttgttgtgc aatttccgta ttgaaatctt ctttatccgc atacggatta aattcatgtt
     1021 cataccagcg ctttaaaaat gaatacggat tctcaaactg aataaaaaag ctattcatat
     1081 taatttttgg taaccaatcc aaaaattctt ttatattctg gtaactatct gcaccttcta
     1141 tacatactcc tcgatgttta taactggcag tctcgtgaat agagagctct ttctcattcc
     1201 agtcagatat cgataacgag ggaattagtt catgttttct acctggtcta gtgaatacag
     1261 ctccaaattc actaagtaag cgatataccg caataagaat agagatatca gaattacctg
     1321 ataatatcgc atttccattc ttcatctcaa tcccaatcgt atcattattg tcaaaatatt
     1381 cttttgagag tagaatattt gcatcttcct caacagttgt ccttcctaac tcaaaatcaa
     1441 aaatggcttt caagtaatat gtaagttcat ctatagcaaa ttgagaagtt ttattctgta
     1501 ctttatcaaa aatcgttaat ttcatatgat cactctcctg atgcttcaag ctctaaattc
     1561 ttattatcgg ccactttgaa aaatggataa taaataatga atgagactcc tattaaaata
     1621 atttgtaaaa ttgctccttg aacactaccg ccagtagcaa ggaacccacc aagaattgga
     1681 ggcattgtcc aaggaagaac aacccctgtt gtcatcggaa ctaatccagt tgccatagcg
     1741 aaataggtaa ttattgcatt tactgttggc gtgagaataa aaggaatcat cataatagga
     1801 ttcaaaacgg ttggaaaact gaacagaata gcagtattaa tattaaagag agaaggaata
     1861 aaggagattc gtcctaaact cttaaatgta cgacttttac taaagacaag taagcaaatc
     1921 gctaatccta ctgtagcgcc accaccgccc ataaatacga acaaatcttt gaatggcaaa
     1981 gtaataatat gtggtaattt ttctcccgca gctgctgcaa cttgatttgc ttctgtgaac
     2041 tgtaaccaaa ccggatcaac aaaagcattt aacacttgtc caccattaac gccagtaaac
     2101 cagaaaagtg aatttacaag cacaacaagc accattccac ctagacttcc tgcaataagt
     2161 cctagtggtt tacctacaat taatcctaaa accgctccaa gtccaccttc aacaccggca
     2221 gcttctaatc cctggaagac gcacgcccag aaaatcaatg ttgttaatgc tggaagcaat
     2281 gcagcaaacg acttacccac aacgtcaggg acattttttg gcattttaat tgtaatacct
     2341 ctttgaataa agaagcgata aatttcagct gaaactaatc caatagcaat agcaacaaat
     2401 aatgcacttg cgttcaaact tccaaatggt attgctccag caaatacttg attaatttgt
     2461 tcaccagatt cgttgaaaac tattgttgag aatcttggtg caagtaaaat aaaagaagat
     2521 aaggcaataa cacctgcaga aggtccatct gtctcatatg attcggataa tcgatatgca
     2581 ataccgaatg tagctatgag agagatgatc gccattgttg attgatttaa ccgatttaaa
     2641 attcccaaca aaccaatttg ctctaaaaag cctactactg aaaatccccc agaagcctga
     2701 tccggccaac tgattagcaa caggaagaac gagccaacta atacaagagg catagccatc
     2761 ataaaaccgt cacgaactgc tttcaaatga cgttgatttc ctaccttagt tccaaaagga
     2821 gcaagtttat gttcaagaaa atgcattaat ctattcattt tct
//
LOCUS       DASGBY010000167         2857 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.168, whole genome shotgun sequence.
ACCESSION   DASGBY010000167 DASGBY010000000
VERSION     DASGBY010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.168"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..557
                     /locus_tag="U1396_001884"
     CDS             <1..557
                     /locus_tag="U1396_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000922225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEM5343029.1"
                     /translation="LLSPVIIILAIWIKLDSKGPIFYRQERVTRYGRIFRIFKFRTMI
                     SDADKVGSLVTVGQDNRITKVGHIIRKYRLDEVPQLFNVLMGDMSFVGVRPEVQKYVN
                     QYTDEMFATLLLPAGITSPASIAYKDEDIVLEEYCSQGYSPDEAYVQKVLPEKMKYNL
                     EYIRNFGIISDFKVMIDTVIKVIK"
     gene            567..1781
                     /locus_tag="U1396_001885"
     CDS             567..1781
                     /locus_tag="U1396_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006152719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEM5343030.1"
                     /translation="MTKRQNIPFSPPDITQAEIDEVIDTLKSGWITTGPKTKELERRL
                     SVFTGTNKTVCLNSATAGLELVLRILGVGPGDEVIVPAMTYTASCSVITHVGATPVMV
                     DIQKNSFEMEYDALEKAITPKTKVIIPVDLAGIPCDYDKIYTIVENKRSLYVASDNKW
                     QKLFGRVIILSDSAHSLGASYKGKPAGSLADFTSFSFHAVKNFTTAEGGSVTWRSHPD
                     LDDEEMYKEFQIYSLHGQTKDALAKTQLGSWEYDIVIPGYKCNMTDIMAGIGLVQLER
                     YPSLLNRRREIIEKYNAGFEGTSIKPLVHLTEDKQSSMHLYITHLQGYTLEQRNEVIQ
                     KMAEAGIACNVHYKPLPLLTAYKNLGFEMKDFPNAYQYFENEVTLPLHTNLSDEDVEY
                     VIEMFLKIVSRD"
     gene            1814..2584
                     /locus_tag="U1396_001886"
     CDS             1814..2584
                     /locus_tag="U1396_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013851740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5343031.1"
                     /translation="MVERDTLVSIIMPSWNTAKYISESIQSVLDQTHQNWELIIVDDC
                     SNDETEKVVSHFKDSRIKFFKNSNNLGAALTRNKALRKARGRWIAFLDSDDLWHPSKL
                     EKQLEFMKNNGYSFTYHNFEKIDESSQSLRVLVSGPAIVTRKMMYNYGYPGCLTFMYD
                     ADKMGLIQIKDIKKNNDYAILLQLCKKYDCYLLNESLASYRIRKKSISHDKISKKLRS
                     HYDLFHICDEQPPLKSLWFAVFNMYYGILKKIRYEKQF"
     gene            2616..>2857
                     /locus_tag="U1396_001887"
     CDS             2616..>2857
                     /locus_tag="U1396_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEM5343032.1"
                     /translation="MKKSDLTVIGHFGGTETFNDGQTVKTKNLVKELRLAGLKNIKIA
                     DTYYKKKNPLKLLVQTIYALFFSKNIIILLSTNGLR"
BASE COUNT          989 a          413 c          567 g          888 t
ORIGIN      
        1 tgctattatc cccagtaatc attatattag ctatttggat aaaattagat agtaaggggc
       61 caatttttta tcgccaagaa cgtgttacga gatatggtcg aatttttaga atatttaagt
      121 ttagaacaat gatttctgat gcggataaag tcggaagtct tgtcacagtc ggtcaagata
      181 atcgtattac gaaagtcggt cacattatca gaaaatatcg gctggacgaa gtgccccaac
      241 tttttaatgt tttaatgggg gatatgagct ttgtaggtgt aagaccagaa gtacaaaaat
      301 atgtaaatca gtatactgat gaaatgtttg cgacgttact tttacctgca ggaattactt
      361 caccagcgag tattgcatat aaggatgaag atattgtttt agaagaatat tgttctcaag
      421 gctatagtcc tgatgaagca tatgttcaaa aagtattacc agaaaaaatg aagtacaatt
      481 tggaatatat cagaaacttt ggaattattt ctgattttaa agtaatgatt gatacagtaa
      541 ttaaagtaat aaaataggag attaaaatga caaaaagaca aaatattcca ttttcaccac
      601 cagatattac ccaagctgaa attgatgaag ttattgacac actaaaatct ggttggatta
      661 caacaggacc aaagacaaaa gagctagaac gtcggctatc agtatttaca ggaaccaata
      721 aaactgtgtg tttaaattct gctactgcag gattggaact agtcttacga attcttggtg
      781 ttggacccgg agatgaagtt attgttcctg ctatgaccta tactgcctca tgtagtgtca
      841 ttactcatgt aggagcaact cctgtgatgg ttgatattca aaaaaacagc tttgagatgg
      901 aatatgatgc tttggaaaaa gcgattactc cgaaaacaaa agttatcatt cctgttgatc
      961 tagctggtat tccttgtgat tatgataaga tttataccat cgtagaaaac aaacgctctt
     1021 tgtatgttgc ttctgataat aaatggcaga aactttttgg gcgagttatt atcctatctg
     1081 atagtgcaca ctcactaggt gctagttata agggaaaacc agcgggttcc ctagcagatt
     1141 ttacctcatt ttctttccat gcagttaaga attttacaac tgctgaagga ggtagtgtga
     1201 catggagatc acatcctgat ttggatgacg aagagatgta taaagagttt cagatttact
     1261 ctcttcatgg tcagacaaag gatgcattag ctaagacaca attagggtca tgggaatatg
     1321 acattgttat tcctggttac aagtgtaata tgacagatat tatggcaggt atcggtcttg
     1381 tgcaattaga acgttaccca tctttgttga atcgtcgcag agaaatcatt gagaaataca
     1441 atgctggctt tgaggggact tcgattaagc cgttggtaca cctgacggaa gataaacaat
     1501 cgtctatgca cttgtatatc acgcatctac aaggctatac tttagaacaa cgaaatgaag
     1561 tcattcaaaa aatggctgaa gcaggtattg cgtgcaatgt tcactacaaa ccattacctc
     1621 ttctcacagc ctacaagaat cttggttttg aaatgaaaga ttttccgaat gcctatcagt
     1681 attttgaaaa tgaagttaca ctgcctcttc ataccaactt gagtgatgaa gatgtggagt
     1741 atgtgataga aatgttttta aaaattgtta gtagagatta gttattttgg aaggagatat
     1801 ggtggaaaga gatatggtgg aaagagacac gttggtatct ataataatgc cctcgtggaa
     1861 tacagctaag tatatatctg aatcaatcca gtcagtgttg gaccaaacac accaaaattg
     1921 ggaacttata atcgttgatg attgttctaa tgacgaaact gaaaaagttg tttcgcattt
     1981 caaagattca agaataaagt tttttaaaaa ttcgaataat ttaggggcag ctctaacacg
     2041 aaataaggca ctaagaaaag ctagaggtag gtggattgcg ttcttggatt cagatgattt
     2101 atggcacccg agtaagctag aaaaacagct tgaatttatg aaaaataatg gatattcatt
     2161 tacttatcac aattttgaaa agattgatga atctagtcag tctttacgtg tcctggtgtc
     2221 aggaccagca attgtgacta gaaaaatgat gtacaattac ggctatccag ggtgtttgac
     2281 tttcatgtat gatgcagaca aaatgggttt aattcagata aaagatataa agaaaaataa
     2341 cgattatgcg atattacttc aattgtgtaa gaagtatgac tgttatcttt taaatgaaag
     2401 tttagcttcg tatcgaatta gaaaaaaatc gatttcacac gataaaatat caaaaaaact
     2461 acgtagtcac tatgatttat ttcatatttg tgatgaacag cctcctttaa aatccttatg
     2521 gtttgcagtt tttaatatgt attatgggat tttgaaaaaa attagatatg aaaagcaatt
     2581 ttagttaatg gaatttaaaa agtagggatg gggaaatgaa aaaatcagat ttaacagtga
     2641 ttggacactt tggaggtaca gagactttta acgatggtca aactgttaag accaaaaatt
     2701 tggtaaaaga attacggttg gcaggactaa aaaatataaa aattgctgat acctactata
     2761 agaaaaagaa ccctttaaaa ctattagttc agacgattta tgctcttttt ttctctaaaa
     2821 atatcattat tttgctctca acaaatggct taagatt
//
LOCUS       DASGBY010000168         2815 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.169, whole genome shotgun sequence.
ACCESSION   DASGBY010000168 DASGBY010000000
VERSION     DASGBY010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.169"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            45..2624
                     /locus_tag="U1396_001888"
     CDS             45..2624
                     /locus_tag="U1396_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM5343033.1"
                     /translation="MKKIFTKTSIYYLLSFLIPLTIISIVLAFQGIWWGSDTTILASD
                     GFHQYVIFNQTLRNTLHGDGSLFYTFSSGLGLNFYALSSYYLGSFLSPIVFFFDLQSM
                     PDAIYLVTIVKFGLTGLSTYFSLKGIHKNLKEEWALLLATSFSLMSFSTSQLEINNWL
                     DVFILLPLVLLGLHRLLKKQGPILYYITLTCLFIQNYYFGYMVAIFLTLWTLVQLSWI
                     DSQRIKRFIKFTIVSILSALSSMFMLLPTYLDLKTHGETFTKIVNLKTEDSWYLDFFA
                     KNLVGSFDTTKFGSIPMISVGLVPLILALLFFTLKEIKPTIKLSYALFFTFIISSFYL
                     QPLNLFWQGMHAPNMFLYRYAWALSITVIYLAAETLVRLRQVSIKNFTLIVSFLLICF
                     TSTFIFRDHYEFLTDVNFLLTLEFLIAYFILFVAMIRYKSSLKWINIVLLFFTFLELG
                     LHSHYQVQGISDEWHFPSRSNYEEKLTDIDSIVKSTKTTTDSFYRIERLLPQTGNDSM
                     KFNYNGISQFSSIRNRASSSALDKLGFRSDGTNLNLRYQNNTIIADSLFGVKYNLATT
                     DPNKFGFTLNQSQSTINLYENSFNLGLALLTEGIYKDVNFTNLTLDNQTNFLNQLTGL
                     SQKYYHTLSDVISQNTVELSNRMTVNKVDNEDAAKATFLVNIPANSQVYLNLPNLTFS
                     NENQKKVVITVNNQSSEFTLDNAFSFFNVGSFTTDVQVQVDVYFPENNQVSFDKPQFY
                     RLDLLAFQQAISILQEKQVVTKTDGNKVTVDFVTDKEASLLLTLPYDKGWNATIDGKP
                     IKIQKVQEGFMKVDVSPGQTKLVLTFVPNGFYLGLLISFGAVFVFFSYQFIGYYYSKN
                     REY"
     gene            complement(2693..2765)
                     /locus_tag="U1396_001889"
     tRNA            complement(2693..2765)
                     /locus_tag="U1396_001889"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2730..2732),aa:Asn,seq:gtt)
BASE COUNT          874 a          540 c          421 g          980 t
ORIGIN      
        1 tttgaccggt caagttcttt cccacttcct tttcttttaa atctatgaaa aaaatattta
       61 caaaaacatc catttattat ctcttatctt tccttattcc gctgactatt atttctatcg
      121 tcttagcatt tcaaggaatc tggtggggaa gtgatacaac aatattggcc agtgatggtt
      181 tccatcagta tgttattttt aatcaaacat tacgaaatac tttacacgga gacggctctt
      241 tattttacac attttcaagt ggtttaggac tcaattttta tgctctatcc tcctattacc
      301 taggttcatt cctatctcca attgtctttt tctttgattt acaatccatg cctgacgcta
      361 tctaccttgt cactattgtc aaatttggat tgactgggtt gtcaacttat ttcagtctaa
      421 agggtatcca taaaaatttg aaagaagaat gggcactatt actcgctact agtttttctc
      481 tgatgagttt tagtacaagt caattagaaa taaacaactg gctagacgtt tttatacttc
      541 tcccactcgt tcttcttgga ttgcatcgat tattaaaaaa acagggtccg attctctact
      601 acataacatt aacatgcttg tttatccaaa actattactt cggttatatg gtggctattt
      661 tcctaacatt atggacattg gttcaattat catggataga tagtcagaga atcaaaagat
      721 ttatcaagtt tacaatagtg tcaattttat ctgctctaag cagcatgttc atgttgttac
      781 caacctactt ggatttaaaa actcatggtg agacatttac aaaaattgtc aacctaaaaa
      841 ccgaagactc ttggtatctg gacttctttg caaaaaactt agttggtagc tttgatacaa
      901 caaaatttgg ttctattccc atgatctctg ttggtctcgt tccattaata ctcgctttac
      961 tattctttac attaaaagaa ataaaaccaa ctatcaaact ctcctatgct ctattcttta
     1021 cattcattat ttcaagtttc tacctacaac cactcaatct tttttggcaa ggtatgcatg
     1081 cgccaaacat gttcctctat cgttatgcat gggctctatc aataaccgtt atctatttag
     1141 cagcagagac attggtacga ctacgtcaag taagtattaa aaattttact ctgattgttt
     1201 catttttact catttgcttt acttctacct ttatttttag agatcattat gagtttctaa
     1261 cggatgtaaa tttcctactc acactagaat ttctaatagc ctacttcatt ctttttgtag
     1321 caatgattcg ctataaatca tccttaaaat ggattaatat tgttttattg ttcttcactt
     1381 tcttagaact tggattacat agtcattatc aagttcaggg gatttctgat gaatggcatt
     1441 ttcctagccg atcaaactat gaagaaaaat tgacagatat tgacagtatt gtaaagtcta
     1501 caaagactac aactgattca ttttatcgta tagaacgtct attaccacaa actggcaatg
     1561 atagcatgaa attcaattac aacggtattt ctcaattctc ctccattcga aatcgtgctt
     1621 ccagctcagc actagataag ctcggtttcc gttcagacgg taccaatttg aatcttcgtt
     1681 atcagaataa tacaattatt gctgatagcc tattcggagt caaatataat ttagctacta
     1741 cggacccaaa taagtttggt ttcacactga atcagagtca gtctactatt aatctttacg
     1801 aaaatagttt taatctaggg ttagccctat tgactgaggg gatttacaaa gatgtcaatt
     1861 ttacaaatct gactctcgat aatcaaacaa atttcctcaa tcaactaaca gggctatctc
     1921 aaaaatacta ccacacttta tcagatgtta tttcacaaaa tacagttgaa ctgagcaatc
     1981 gaatgactgt caacaaagtt gacaatgagg atgctgcaaa agcaactttc ttagtaaata
     2041 tacctgcaaa tagccaagta tacttaaatt tgccaaattt aacattctca aatgaaaatc
     2101 aaaaaaaggt tgtcattact gtcaataatc agtcaagtga gtttacatta gataatgctt
     2161 tctctttctt caatgtgggg agctttacta cagatgtaca agttcaagtc gatgtatatt
     2221 ttcctgaaaa taatcaagtt tcttttgata aaccacaatt ttatcgattg gacttattag
     2281 ctttccaaca ggctatttcc attctccaag aaaaacaagt agtaacaaaa actgatggta
     2341 ataaagtaac cgttgatttt gtaaccgata aagaagcctc actcctcctt actttaccct
     2401 atgataaagg atggaatgca accattgatg gtaaacctat caaaatccaa aaagtgcaag
     2461 aaggttttat gaaagtggat gtaagtccag gtcaaactaa actggtttta acctttgtac
     2521 caaatggttt ctatctaggt ttactgattt cttttggtgc agtttttgta tttttctcct
     2581 atcaattcat tggatactat tattctaaga accgagaata ctaaactttc tcggtttttt
     2641 cttgtaaaaa gcaaaaaacc ttgatttctc aaggtttcct atgctttatc tactccgcca
     2701 acagggctcg aacctgtgac atcatgatta acagtcatgc gctctaccaa ctgagctatg
     2761 gcggaagaaa tagtccgtac gggattcgaa cccgtgttac cgccgtgaaa aggcg
//
LOCUS       DASGBY010000169         2770 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.170, whole genome shotgun sequence.
ACCESSION   DASGBY010000169 DASGBY010000000
VERSION     DASGBY010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.170"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..>2770
                     /gene="cas9"
                     /locus_tag="U1396_001890"
     CDS             <1..>2770
                     /gene="cas9"
                     /locus_tag="U1396_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637067.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEM5343034.1"
                     /translation="TVEELYISIKNIMKRRGIPYLDDAESDNEAGRSDYAKAIERNRQ
                     LLTSKTPGEIQLERLEKYGQLRGNFTIIDEEGQSQQIINVFSTSDYVKEVEKILDCQK
                     MYHKFISDEFCDKLIELLREKRKYYVGPGNEKSRTDYGIYRTDGTTLENLFGILIGKC
                     TFYPDQYRSSRASYTAQEFNFLNDLNNLTVPTETKKLSQEQKEFLVNYAKETSVLGAG
                     KILQQIAKLADCKVEDIRGYRLDNKDKPELHTFETYRAMKGLVPLVDIGVLSREQLDI
                     LADILTLNTDFEGIREALKKQLPNVFDEKQVKGLASFRKSKSQLFAKGWHNLSQKIML
                     EVIPELYATSDEQMTILTRLGKFEKSSVAEYPSSINVDEITDEIYNPVVAKSIRQTIK
                     IINASIKKWDEFDQIVIEMPRDRNEDEEKKRIADGQKANAKEKADSILRAAELYCAGK
                     VLPDYVYNGHNQLATKIRLWYQQGERCIYTGQPISIHDLIHNQNQYEIDHILPLSLTF
                     DDSLSNKVLVLATANQEKAQRTPYNYLKSATSAWSYREFKDYVTKRKGIGKKKCEYLT
                     FEEDINGFEVRSKFIQRNLVDTRYASKVILNALQDYFKISGIQTKVSVVRGQFTSQLR
                     HKWGIEKTRETYHHHAVDALIIAASSQLRLWKKQESPLVVDYQEGRQVDLETGEILEL
                     TDEQYKELVYQPPYQGFVNTISSSAFDNEILFSYQVDSKVNRKISDATIYATRNAQLG
                     KDKTEGIYVLGKIKDIYTQAGYEAFLKRYTKDKTSFLMYHKDLDTWEKVIEIILRDYR
                     EYDEKGKEIGNPFERYRRENGYVKKYSRKGNGTAIKSLKYYDNKLGNHIDITPENSRN
                     AVVLQSLKPWRTDVYFNKETGKYEFLGIKYSDLSFEKGTGEYGISQEKYDSIKIAEGV
                     AKKSIFKFT"
BASE COUNT         1032 a          386 c          569 g          783 t
ORIGIN      
        1 acagttgaag aattatatat ttctataaag aatattatga agcgcagggg gataccctat
       61 ctagatgatg cagagtcaga taacgaggcg ggaagaagtg attatgctaa agctatcgag
      121 cgtaatagac agttattgac tagtaaaaca ccaggggaaa ttcagttaga gcgcttagag
      181 aaatacggtc agttgcgtgg aaatttcacg ataattgatg aggaggggca atctcaacaa
      241 attatcaatg ttttttcaac atcagattat gtcaaggaag ttgagaaaat tttagattgt
      301 caaaaaatgt atcataaatt tatatctgat gaattttgcg ataagctgat cgaactatta
      361 agagaaaaaa gaaagtatta tgttggtcca gggaatgaga aatctagaac tgactatggt
      421 atttatagaa cagatgggac aactctagag aatttatttg gaattcttat tggtaaatgt
      481 acattttatc cagatcaata tcgttcttcg agagcgtcct atacagcaca agaatttaat
      541 tttttaaatg atttaaacaa tttaacagta cctactgaaa cgaaaaagtt aagtcaggaa
      601 caaaaagaat ttttagtaaa ttatgctaaa gaaacgtcgg tattaggggc tggaaaaata
      661 ttgcaacaaa ttgcgaaact tgcggattgt aaggttgaag atattagggg gtatcgttta
      721 gataataagg ataaacccga actacatacc tttgaaacat atcgagcaat gaaaggtcta
      781 gttccgttag tagacattgg agtattgtcg agagagcagc ttgatatatt agccgatatt
      841 ctaaccctta atactgattt tgaaggaatt agagaggccc taaaaaaaca attgccaaat
      901 gtatttgatg aaaaacaggt caaggggtta gcaagtttta gaaagtcgaa aagccaatta
      961 tttgcaaaag gctggcacaa tctatctcaa aaaattatgc tagaggtaat tccagaatta
     1021 tatgcaacat ctgatgaaca aatgacaatc ttaacacgat taggaaagtt tgagaagagt
     1081 agtgttgctg aatatccttc ctcaattaat gtagatgaga ttacagatga aatatataat
     1141 ccagtcgttg ctaaatctat ccgtcaaacc attaaaatta tcaatgcttc gataaaaaaa
     1201 tgggatgaat ttgatcaaat tgttatagag atgcctcgtg atcggaatga agatgaagag
     1261 aagaagcgaa ttgcggatgg acagaaagca aatgcaaaag aaaaagcgga ttcaatccta
     1321 cgtgcggcag aattgtattg tgctggaaag gtattgccag attatgtcta taatggacac
     1381 aatcagttag caacaaaaat tcgtctctgg tatcaacaag gagagcgttg tatttatact
     1441 ggtcagccga tctcaattca tgatttaatt cataatcaga atcagtatga aattgaccat
     1501 atcttgccac tttctttgac atttgatgat agtttatcga ataaggtttt agttcttgca
     1561 actgcaaacc aagagaaagc tcaacgtaca ccgtataatt atctgaaaag tgctacgtca
     1621 gcttggtcct atcgtgaatt taaggactat gttactaagc gcaaaggaat tgggaagaag
     1681 aaatgtgaat atctgacatt tgaggaagat attaatggat ttgaggtgag aagtaagttc
     1741 attcagcgta acttagtgga tactcgatac gcctctaaag tcattctaaa tgccttacaa
     1801 gattatttca aaatatcagg gatacaaacg aaagtttctg ttgtaagagg tcaatttaca
     1861 tctcaattgc gtcataaatg gggaattgaa aagacacgtg aaacgtatca tcaccatgcg
     1921 gtggatgcct taattattgc agcatcaagt caattaagac tctggaaaaa gcaagaaagc
     1981 ccgcttgttg ttgattacca ggaaggacgt caagtagact tagaaactgg agaaatctta
     2041 gaattgacag atgagcaata taaagaactt gtctatcaac cgccgtatca aggatttgta
     2101 aatactatct ctagctcggc ttttgataat gagatactgt tttcttacca agtagactcc
     2161 aaggtgaatc gtaaaatttc tgatgcaacc atttatgcaa ctcgtaacgc acaacttgga
     2221 aaagataaaa cggaagggat atatgtcctt ggaaaaatca aagatatcta tacacaagct
     2281 ggatatgagg catttttgaa acgttatacg aaggacaaaa cttcttttct aatgtatcat
     2341 aaagaccttg atacttggga aaaagtgatt gagattattt tacgtgacta tagagaatat
     2401 gatgaaaaag ggaaagaaat aggtaaccca tttgaaagat atcgtaggga aaatggttat
     2461 gtgaaaaaat atagccgtaa aggaaatggt actgcaataa aatcattaaa atactatgat
     2521 aataagcttg gaaatcatat cgatattact ccagaaaata gtcgaaatgc ggtagtattg
     2581 cagtcattaa aaccttggag gacagatgta tattttaata aagaaacagg caagtatgaa
     2641 ttcttgggga ttaaatattc tgatctatcg ttcgaaaaag gtactggaga gtatggcata
     2701 agtcaagaaa agtatgattc aataaaaata gcagaaggag ttgcaaaaaa atcgatattt
     2761 aaatttacac
//
LOCUS       DASGBY010000170         2765 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.171, whole genome shotgun sequence.
ACCESSION   DASGBY010000170 DASGBY010000000
VERSION     DASGBY010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2765
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.171"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(1..405)
                     /locus_tag="U1396_001891"
     CDS             complement(1..405)
                     /locus_tag="U1396_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM5343035.1"
                     /translation="MAGRKISPQSLKNLYQSNKEANQLTKESIETALLFLLEKKELKQ
                     ISVSELVRKAGVSRNAFYRNYKSKEEILEDYYERTSSNLKKKWHDLQDKVQKDGVKQS
                     FADFVQEQKRKAEQSKALSNVSQWIKEKTKRD"
     gene            532..1383
                     /locus_tag="U1396_001892"
     CDS             532..1383
                     /locus_tag="U1396_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5343036.1"
                     /translation="MTKWKIVADSGCDYRQLANLAPDTEFISVPLTIQVGEQAFVDDA
                     SLDIDHMMEVMEASKSAAGSACPSPQAYQAAFEGAENIIVVTITGGLSGSFNAARVAR
                     DMYIEEHPNVNIHLIDSLSASGEMDLLVDEINRLIGAGLDFPQVVEAITHYREHSKLL
                     FVLAKVDNLVKNGRLSKLVGTVVGLLNIRMVGEASAEGKLELLQKARGHKKSVTAAFE
                     EMKKAGYDGGRIVMAHRNNAKFFQQFSELVKASFPTAVIDEVATSGLCSFYAEEGGLL
                     MGYEVKA"
     gene            complement(1482..2741)
                     /locus_tag="U1396_001893"
     CDS             complement(1482..2741)
                     /locus_tag="U1396_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEM5343037.1"
                     /translation="MKKYQVIIQDILTGIEEHRFKRGEKLPSIRQLSEQYHCSKDTVQ
                     KAMLELKYQNKIYAVEKSGYYILEDRDFQDHTVELNPADFQELPYEDFRICLNESLIG
                     RENYLFNYYHQQEGLAELISSVQSLLMDYHVYTKKDQLVITAGSQQALYILTQMETLA
                     GKTEILIENPTYSRMIELIRHQGIPYQTIERDLDGIDLEELESIFQTGKIKFFYTIPR
                     LHNPLGSTYDIATKTAIVKLAKQYDVYIIEDDYLADFDSSHSLPLHYLDTDNRVIYIK
                     SFTPTLFPALRIGAISLPNQLRDTFIKHKSLIDYDTNLIMQKALSLYIDNGMFARNTQ
                     HLHHIYHAQWNKIKDCLEKYALNIPYRISKGSVTFQLSKGILSPSIQHMFEKCYYFSG
                     QKADFLQIFFEQDFADKLEQFVRYLNE"
BASE COUNT          755 a          476 c          624 g          910 t
ORIGIN      
        1 ttaatcccgt tttgtttttt ccttgatcca ttgactgacg ttggacaggg ccttgctttg
       61 ctctgccttg cgtttttgtt cctggacaaa atctgcaaag ctttgcttga cgccgtcctt
      121 ttgaaccttg tcctgcaaat catgccattt ctttttaagg ttgctggaag tccgttcgta
      181 gtagtcttca aggatttctt ccttggactt gtaattgcgg tagaaggcat tgcgtgacac
      241 accagctttt cggaccaatt cagataccga aatttgcttg agctcctttt tctctaggag
      301 aaatagcaga gcagtttcta ttgattcctt agtcagttga ttcgcttctt tatttgattg
      361 atagaggttt ttcaaagatt ggggtgaaat tttacgacct gccatagttt tccttttccg
      421 agtgtcacat ctgaaagaaa atgctttcag atggggtagt ttaatgatat aattgtaagt
      481 aaatagagat ttattgtcaa ataaaaaaat aaaattggaa atgagaatat tatgacaaaa
      541 tggaaaatcg ttgcagattc gggctgcgac tatcgtcaat tagctaatct agctccggac
      601 actgaattta ttagtgtgcc acttaccatc caagttggag aacaagcatt tgttgatgat
      661 gcaagcttgg atattgatca catgatggag gtgatggaag catctaagtc tgcagcgggg
      721 tcggcgtgcc caagtccgca ggcttatcag gcagcttttg agggagctga gaacattatc
      781 gttgtgacga ttacaggtgg gctatctggt agttttaatg cggcacgtgt agctagggat
      841 atgtatatcg aagagcatcc gaatgtcaat atccatttga tagatagttt gtcagccagt
      901 ggggaaatgg atttacttgt tgacgaaatc aatcgcttaa ttggtgcagg attagatttt
      961 ccacaagtag tagaagcgat aactcactat cgggaacaca gtaagctcct ctttgtttta
     1021 gcgaaggttg ataatcttgt taagaatgga agactgagca aattggtagg cactgtcgtt
     1081 ggtcttctca atatccgtat ggttggtgag gcaagcgctg aaggaaaatt agagttgctt
     1141 caaaaggcgc gtggtcataa gaaatctgtg acagcagcct ttgaagaaat gaaaaaagca
     1201 ggttatgatg gtggtcgaat tgtcatggcc caccgcaaca atgctaagtt cttccaacaa
     1261 ttctcagagt tggtaaaagc aagttttcca acggctgtta ttgacgaagt tgcaacatca
     1321 ggtctatgca gtttttatgc tgaagaaggt ggacttttga tgggctatga agtgaaagcg
     1381 tgattcacag agtaacaatt ttgggatgta atttccacta tagaataatc cccctcgtct
     1441 tctaagttcg agggggattg tttgtatgag actattggat ttcattcatt caaatatctt
     1501 acgaattgct ccagtttatc tgcaaaatct tgttcaaaga agatctgtaa gaaatcagct
     1561 ttctgtccgc tgaaataata acacttttca aacatgtgtt ggatgctagg cgaaagaatc
     1621 cccttgctta gctgaaaggt cacgctccct ttggaaattc gatacgggat gttcaaagcg
     1681 tatttctcta aacaatcttt tattttattc cactgagcgt gataaatgtg atgaagatgc
     1741 tgtgtgttcc gtgcaaacat accgttatca atgtagagtg agagagcttt ttgcatgata
     1801 agattggtat cgtagtcgat tagactctta tgtttgatga aggtatcacg tagctggtta
     1861 ggaaggctga ttgcaccgat tcggagggca ggaaagagtg tcggtgtaaa agattttata
     1921 tagatgacgc gattatctgt atcaagatag tgtaaaggta ggctatgact agagtcgaaa
     1981 tccgccaaat agtcatcctc aatgatgtag acatcgtatt gctttgctaa ttttacgatg
     2041 gctgtttttg ttgctatatc ataggttgaa ccgagagggt tgtgcaagcg aggaattgtg
     2101 tagaaaaact taatttttcc agtttggaag atactttcca attcttctag gtcaattcca
     2161 tctaaatccc gttcaattgt ttgatagggg attccttgat gtcgaatgag ctctatcatt
     2221 cgtgaatagg tagggttctc tatcaagatt tccgtttttc cagccaaggt ttccatttgt
     2281 gtgagaatat atagagcttg ttgactacca gctgtgataa ccagttggtc tttttttgta
     2341 tagacatgat agtccattaa cagactttga acggaggaaa tcaattctgc caatccctct
     2401 tgctggtgat agtagttgaa taggtaattt tcccggccaa taagactttc gtttagacaa
     2461 atccgaaaat cttcataggg taattcttga aagtctgcag gattgagctc tacagtatgg
     2521 tcttggaaat ctctatcttc taagatataa taaccgcttt tttcgacagc gtagatctta
     2581 ttttggtatt ttaattccaa catagccttt tggacagtgt ctttgctaca atgatattgc
     2641 tcgctgagtt gacggataga aggtaatttc tctccacgtt tgaatcggtg ttcctctatt
     2701 ccagtcaaaa tatcttggat gataacttga tattttttca tctaggcccc cttttttata
     2761 gacta
//
LOCUS       DASGBY010000171         2758 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.172, whole genome shotgun sequence.
ACCESSION   DASGBY010000171 DASGBY010000000
VERSION     DASGBY010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.172"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..423)
                     /locus_tag="U1396_001894"
     CDS             complement(<1..423)
                     /locus_tag="U1396_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343038.1"
                     /translation="MKFLLMNVRRTVFSKKMLLSFLLAFSCILIGNMVAFNGIYKLEG
                     LSLFFAGSTIRGFSPISLVAAVISAIPIADRVIEDSKNHFLRLQLQRTSRIKYIWTLL
                     VTAGISGFLSLFLPYFLLLVANLCLTPYKEIYIGDYQGV"
     gene            complement(508..936)
                     /locus_tag="U1396_001895"
     CDS             complement(508..936)
                     /locus_tag="U1396_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343039.1"
                     /translation="MKGEDSHENEIIYKKPIIVAIALLGLVSPTVFSRGVLDYSMVLP
                     RIGSTTTGSIVKVTHSRGVNRNDSTGGGKTLNTSIRNYHSGSDITPTYSLPSGARVLM
                     SYHGSGSHYVNETTTLGLATQFGNTVRVQATGSWSPDEEQ"
     gene            complement(1151..2428)
                     /locus_tag="U1396_001896"
     CDS             complement(1151..2428)
                     /locus_tag="U1396_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEM5343040.1"
                     /translation="MSTKANLLFDVHEKPAPLQGILLSFQHVFAMFGATILVPLILGM
                     PVSVALFASGVGTLIYQVATQFKVPVYLGSSFAYISAMALAIKEMGGDVSAAQTGILF
                     VGLIYVLIAALVKVIGTKWIDSLLPPIVIGPMIIVIGLGLANSAVTSAGFVADGDWKN
                     VVVAIATFLIAAFVNTKGKGFAKIVPFLIAIIGGYVIAIFLGLVNFTPVLEAAWFELP
                     GFYLPFETGAFKSYNFYFGPEMIAILPIAVVTVAEHIGDHTVLSQICGRQFLKDPGLS
                     RTLIGDGVATAVSAFIGGPANTTYGENTGVIGMTRIASVSVIRNAALIAIAFSFLGKF
                     TALISTIPSAVLGGMSILLYGVIASNGLKVLIESRVDFGQVRNLIIASSMLVLGLGGA
                     VLNIGAITLSGTALSAIVGIILNLILPKAEKAE"
BASE COUNT          892 a          610 c          532 g          724 t
ORIGIN      
        1 aacaccttga tagtcaccaa tatatatttc cttatatggc gtcagacata gatttgcaac
       61 caaaagcagg aaatagggta aaaaaaggga caaaaatcct gaaattcctg ccgtcacaag
      121 aagagtccaa atatatttta tacgggatgt tctttgtaat tgcaggcgca gaaagtgatt
      181 cttactatcc tcaataaccc gatcagctat cggaatcgca ctgataactg ctgccacaag
      241 gcttatcggc gaaaaacccc tgatagtcga tcctgcaaaa aacagggaca atccttcaag
      301 tttgtatatg ccattaaaag caaccatatt ccctatcaaa atgcaggaaa atgccaagag
      361 aaaagacaaa agcatctttt tagagaaaac agttcttcta acattcatta gtaaaaattt
      421 catttttacc tcctagtaaa aagagctagg tgaataaatt ccactagctc aatagtctca
      481 ataaacaact tcctagctca ttactaatca ctgttcttca tctggactcc aactgccagt
      541 cgcttgtact ctaactgtat ttccgaattg agtagctaat cccaaagtag tcgtttcatt
      601 gacataatga ctaccacttc catgataaga catgagaacc ctagcaccag atggaagaga
      661 ataggtcgga gttatatcac taccgctgtg gtaatttcgt attgaggtat ttaaagtctt
      721 tccaccacct gtagaatcat tgcgattcac tcctcgcgaa tgagtcacct tgactatgct
      781 accggttgtt gtagatccta tacgtggtaa gaccatggaa taatctagta ctcctcttga
      841 aaaaaccgtc ggagaaacta atcccaataa tgctattgct acgataattg gctttttata
      901 gataatctcg ttttcatgtg aatcttctcc tttcatgaaa accttataag gaagttgttt
      961 atattgatat gtaaattata tcaagtatgg taaaaaatat caaggttata attaaataaa
     1021 cttaggaaat atgacaggag aattaaacaa ctaaaccttt cacactcctc gaaaactaat
     1081 tatttcaccc caatctcctc tacaccatca aaaaaagcca gccggggctg acttgctgtt
     1141 attttcaatt ttactcagcc ttttctgctt ttggcaagat aagattgagg ataataccta
     1201 caatggctga gagggctgta cctgaaaggg tgatggcacc gatgttgaga actgctccac
     1261 caaggcccaa taccagcatt gagcttgcaa taatcaggtt gcgaacttga ccaaagtcaa
     1321 cacggctttc aatcaaaact ttcaaaccgt ttgaggcgat aacaccgtaa agtaagatag
     1381 acataccacc aagaacggca cttggaatag ttgagataag ggctgtaaat ttacccaaga
     1441 atgagaaggc aatggcaatc aaggctgcat tgcggataac ggatactgat gcgatgcgag
     1501 tcataccgat aacccctgta ttttcaccgt aggtcgtatt ggctggtcca ccgataaagg
     1561 cagatacagc agtcgctaca ccatctccaa tcaaggtacg gctgaggcct ggatctttca
     1621 agaactggcg gccgcagatt tggctgagaa cggtgtggtc accgatatgc tcagctactg
     1681 ttacaacagc aattggtaag atagcaatca tttctggacc gaagtagaaa ttgtacgact
     1741 tgaaggcacc tgtttcaaat ggtaggtaga aacctggtaa ttcaaaccaa gccgcttcca
     1801 gaacgggtgt aaagttaacc aggccaagga agatggcaat cacataacca ccgataatgg
     1861 caatcaagaa aggaacaatc ttggcgaagc ctttcccttt ggtattgaca aaagccgcaa
     1921 tcaagaaggt cgcaatcgcc acgacgacgt ttttccagtc gccgtctgcg acgaagcctg
     1981 ctgaagtcac ggcagagttg gcaagaccca gaccgatgac gataatcatt ggaccgatga
     2041 caatcggtgg caagaggctg tcaatccact tagtaccgat aactttgaca agtgcagcga
     2101 tcaacacgta aatcaagccg acgaagagaa taccagtctg agctgccgac acatcaccac
     2161 ccatttcctt gatagcaagc gccatagcag aaatgtaggc aaaggatgaa cccaggtaaa
     2221 ctggaacttt aaactgggtt gccacttgat aaatcaaggt cccaacacct gatgcgaaga
     2281 gggcaaccga tacaggcata ccgagaatca gtggcaccaa aatcgtcgca ccaaacatag
     2341 cgaacacgtg ctggaaactc aacaaaatcc cttgaagcgg tgctggtttc tcatggacat
     2401 caaacaaaag attggctttt gtactcataa atctcccatt ctgggtacac aaaaagaccc
     2461 agactttcta aatatacata gtcataggcc cttaatgaat tatcctgttg tctttctcac
     2521 ctcacgggat gagtttaaaa acctacgctt ttggtattgt aacataagcc cttacttttg
     2581 gcaaggaatt ttgtaaaatt ttatttttta ggaaaatggc agagcaggaa gctgaactgc
     2641 ttattattac tccatttctt cttccaactc tttttccaca cgcgctaact ttaaacgaag
     2701 atttttcatg ccatagccat cttcctgtgc atttttataa ttttattaca cactatat
//
LOCUS       DASGBY010000172         2718 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.173, whole genome shotgun sequence.
ACCESSION   DASGBY010000172 DASGBY010000000
VERSION     DASGBY010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.173"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            38..589
                     /locus_tag="U1396_001897"
     CDS             38..589
                     /locus_tag="U1396_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5343041.1"
                     /translation="MTAILQEEIATSNIFIDKASGKDFDRRNYKRLLRKLRTGDELDI
                     KSIDRLGRNYDEIIEQWRLWVKKKQVDISVLDFPLLNTRNGIENVTGKLISDLVLQIL
                     SYVSQIEREQIQQRQKEGIAEAMKKGVRFGRPKLEKPFLFDDIAQAYQNGEISVQEGA
                     KVLNVPKSTFHNWLKDENYCPKE"
     gene            774..1502
                     /locus_tag="U1396_001898"
     CDS             774..1502
                     /locus_tag="U1396_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5343042.1"
                     /translation="MTKNFTTKAAKVLTIATLSAGTLIGAVALDTTTVSASSVSQISG
                     DELKGKIQAVTNSFPTFESAQAFVTGQMSQMLFGESYRAVVIPENSLYIVEVTIDYDA
                     LTSKDQAIALANQVVAAADSAIGGAAPATPAEPETPVTSEEPTTPVEPETPVTPVEPT
                     TPTEPETPVTSVEPTTPIEVSKNQKSSTTKEEIKKVIPDNSTEAIKKDVKTLPNTGDA
                     GSVLSIIGSGLLSLGGYVALKRKN"
     gene            1750..2478
                     /locus_tag="U1396_001899"
                     /pseudo
     CDS             1750..2478
                     /locus_tag="U1396_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002406008.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
BASE COUNT          964 a          514 c          489 g          751 t
ORIGIN      
        1 cagagtctcc acaaaggagc aacacattga cagacaaatg acagcaattt tgcaagaaga
       61 gattgccaca agcaatattt ttattgataa agcttctggc aaagatttcg atagaaggaa
      121 ttataaacga ttgttaagaa aacttcgaac tggtgatgaa cttgacataa aatccattga
      181 cagactagga agaaattacg atgaaatcat agaacaatgg agattatggg tcaaaaagaa
      241 acaagtcgat atctctgtgc tagattttcc actcctaaat actcgaaacg gaatagaaaa
      301 cgtcacagga aaactaatct cagaccttgt tctccaaatt ctttcctatg tgtcacagat
      361 tgaacgggag caaattcaac aaagacaaaa agaaggaatc gcggaggcta tgaaaaaagg
      421 ggtgaggttt ggaagaccga aattagagaa accttttctg tttgacgaca tcgctcaagc
      481 ctatcaaaat ggagaaataa gtgttcaaga gggagcaaaa gtattaaatg ttccgaagag
      541 cacctttcat aattggctaa aagatgaaaa ttattgtcca aaagagtagg agtttttaga
      601 catcagctgt atctgttatt tctaactcag atgacttcaa gaaaaatcta aaaaacatta
      661 taagagtaag cttttctgtc aacaagtata ttttaacaaa accgtcccaa atagtctgct
      721 ttttgggaca agttaagtct atttctgttt aaattatcta ggagggtcat gatatgacta
      781 agaatttcac aaccaaggcc gcaaaggtct taacaattgc cactctttct gcgggaacac
      841 tcattggagc agtcgcatta gatactacta ccgtttcagc ttcatctgtc tcacaaatct
      901 ctggagatga attgaaaggt aaaattcaag ctgtcactaa ctcatttccg acattcgagt
      961 ctgctcaagc attcgtaacc ggtcaaatgt ctcagatgtt atttggggag tcatatcgtg
     1021 cagtcgtgat tccagaaaat tctctctata tcgtagaagt aacgattgat tacgatgctt
     1081 tgacttctaa agaccaagca atcgcattgg ctaatcaagt tgttgcagct gcagattctg
     1141 caatcggcgg agctgcacct gcgactcctg ctgagccgga aacacctgtg acttcagaag
     1201 agccgactac tccagttgag ccagaaacac ctgtaactcc ggttgaacct actaccccta
     1261 ctgagccaga aacacctgta acttcggttg aacctactac ccctattgaa gtttcgaaaa
     1321 accaaaaatc ttctacaaca aaagaagaaa tcaaaaaagt tatccctgat aattcaacag
     1381 aagcaatcaa gaaagatgtt aaaacattgc caaatacagg cgatgcaggt agcgtactga
     1441 gtattattgg tagcggtttg ctttcactgg gtggatatgt agccctaaaa cgaaaaaatt
     1501 aacgactttg ccttctctgc cttagataga gagggctttt actaaattag aaggaaaata
     1561 aatgagcata cgacgctttt tatacgaaaa cattagcaga cggctaaagc atcaaatcaa
     1621 tagtaagcat aatgggaaga acaaggaact aattgcctat ttagaaaaat gctacctcgt
     1681 ctagatgaag aagatgataa ggtatggacc gaatgtactc tatctaaaat attaaacgga
     1741 aaatcttcgc ttagtcttac tgatttagat atattagcat cgacaagtat gcagaaatcc
     1801 attcaaagaa aacaactcat gaaataaaaa cttcattacg tgatgcttat gctcgtggct
     1861 atatctcaac agattttctt tacttagtta aggcaagggg catattccca taaaacgaaa
     1921 taagtcttta tctgtcacca attttcaaaa actacgtact tatcttttta acaatccaaa
     1981 agatgagttc catattctcg tacttttagc acttgaaata ggtatgcgtt gaggagaatt
     2041 attggcattc gacctgaata tctgtttgat tacggaatca aagtcagaga atctattagt
     2101 ccaacctcta gtgatacttc gctaaaaact gaaaattcaa gacgagaggt cacaatcaat
     2161 aaagaagtct atgacttact cctatcagtt tcagtaaaag aaaatggata tttcttcgat
     2221 cctgatggat ttcatcaatc tcgaaagtta gctaagttac tggaagaact aggaatctca
     2281 aaaatcacat ttcacggtct tcgagatact catgcttcat ctttattctc aaaggatgtt
     2341 gacatcatct atgtttcaaa aagacttggt catgtcaatg ttcaaactac acagaactat
     2401 tatctggagt taatgcctga aaaaagacac cagcaagatg ccgatgcctt aaatttattg
     2461 aattcattaa gcgagtaaac atttgaacca atttgaacca aaaagtcggc acaaatgttg
     2521 tccccataac gtttggatta acgtttagag aatttcgcta ttgaaaacga agacttctca
     2581 ccccttacaa atcccgttct atcaacattt acgaaaatga aacttccatg aaaatggact
     2641 aaaatcctct gatttggata aaattgacac caattaacac cataaaatag actagtcatc
     2701 agtaggtcaa actaattt
//
LOCUS       DASGBY010000173         2685 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.174, whole genome shotgun sequence.
ACCESSION   DASGBY010000173 DASGBY010000000
VERSION     DASGBY010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.174"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..1151
                     /locus_tag="U1396_001900"
     CDS             <1..1151
                     /locus_tag="U1396_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343043.1"
                     /translation="NDFHTENFQNGAKIGSIIGLNMMLGFHLKDIQFNAIAKAPQGHG
                     HAAEYANNVIDKIKYPFQKVEQVGRDNVKNGADRIVGNQKIQTKYYAKASGTINAAFD
                     KANGGEYRYKGMQLEVPKDQYNESIQLMKKKIKAGKVPGHSEPDDAYLIIRKGNVTYN
                     EAKLVAKGGNIVSFSQQIGKILTKKIADQTVKNVAANTVARQAAGVISFGITVGPDVF
                     DLLQGRISSQQLLKNSLVAGTGLLGGVAGGAVAGAFLGPVGSFVGAVAGGTLAAVGSK
                     VVLDNYIEDDRIEMFAILKEEFIDIVMAMALSEEEFKEIQNNIFDKKLGERLKDMFQK
                     KQSVKNRMFTRESIIEREVERVISKRTVLAEEDILEAVQIAEKEFAVI"
     gene            1195..2283
                     /locus_tag="U1396_001901"
     CDS             1195..2283
                     /locus_tag="U1396_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEM5343044.1"
                     /translation="MISGIIAEYNPFHTGHKYLLEQAEGLKIVVMSGNFMQRGEPAIV
                     DKWTRAQMALEHGADLVVEMPFLVSVQSADHFAKGAISILHKLGVEKLVFGTEEMLDY
                     QKIADIYVDKSEEMENFVKNLPDNFSYPQKTQAMWQEFAGLTFTGDTPNHILALAYAK
                     AVAGTGIQLSPVQRQGAGFHSEEVETSYASATAIRKGADQLDLVRGFLPSVSLFEEAT
                     KVSWRNYFPLLRYQIATHPDLSQVFQVNEELASRIRSAIGSVATVEELVDAVATKRYT
                     KARVRRVLTYILINAVETPLPEAVHVLGFSTRGQAYLKQVKERVDLVTRIGKEPWDSL
                     TQQADAVYQLGADAMAEQTYGRVPVRVE"
     gene            2285..2665
                     /locus_tag="U1396_001902"
     CDS             2285..2665
                     /locus_tag="U1396_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TipAS antibiotic-recognition domain-containing
                     protein"
                     /protein_id="HEM5343045.1"
                     /translation="MKKEMSQLEAYKAEAKERWGQTATYAEFEVRYDASKDHLFAQEM
                     QAIFEAFGKMQSLGAVHPDVQAQVANLQAYITENFYTCTKEILQNIGLMYVEDERFSA
                     NIDRAGGLGTAAFVSQAIAIYCQE"
BASE COUNT          825 a          484 c          707 g          669 t
ORIGIN      
        1 aaaatgattt tcatacagag aattttcaaa atggagctaa aataggatca attataggtt
       61 taaatatgat gctaggtttt catttgaaag atattcaatt taatgctatt gcaaaagctc
      121 ctcaaggaca tgggcatgca gctgaatatg ctaataatgt aatagacaag ataaagtatc
      181 ctttccaaaa agtagagcaa gtagggagag ataatgttaa aaatggggca gatagaattg
      241 ttggaaatca aaaaattcaa acaaaatact atgcaaaagc tagtggaacg ataaatgcag
      301 catttgataa ggctaatgga ggagaatacc gttataaggg gatgcagtta gaagttccta
      361 aagaccagta taatgaatca attcaactca tgaagaaaaa aataaaagct ggaaaagttc
      421 cgggtcatag tgagcctgat gatgcctatc tgattattag aaaagggaat gttacttata
      481 atgaggcaaa actggttgcc aagggcggaa atattgtttc attttctcaa caaattggaa
      541 aaattcttac taaaaaaatc gctgatcaaa cagttaagaa tgtcgcagcc aatactgttg
      601 ctagacaagc agcaggagtt atttcattcg gaattactgt aggtccggac gtatttgatc
      661 tactgcaagg tagaatatct agccaacaat tattaaaaaa tagcctagta gcaggaacag
      721 gcttactagg tggagttgca ggtggtgcgg ttgctggagc atttttaggt ccagttggat
      781 catttgtagg tgcagtagct ggtggaacat tggctgctgt tggttctaag gttgttttag
      841 acaactatat agaagatgac agaattgaga tgtttgcaat tctaaaagaa gaatttattg
      901 atattgttat ggctatggcg ctttcagaag aagagtttaa agaaattcaa aataatatct
      961 tcgataagaa attaggagaa cgacttaaag acatgttcca gaaaaagcaa tctgttaaaa
     1021 ataggatgtt tactagagag tcaataattg aacgagaggt tgaaagagtt atctcaaaac
     1081 gcacggtttt agcagaagag gatatacttg aagcagtaca gattgcagaa aaagagtttg
     1141 ctgtaattta ggtattaggt tgtagatggt tgaataaaat ctaggaggta gggcatgatt
     1201 tcagggataa tagcagaata caatcccttt cacacggggc ataaatacct gctggaacag
     1261 gccgaggggt tgaaaattgt ggttatgtca ggcaacttca tgcaacgggg tgagccagcc
     1321 attgtggata agtggacacg ggctcagatg gctttggaac acggggcaga tcttgttgtc
     1381 gagatgccct ttttggtgtc ggtccagtcg gctgaccatt ttgccaaagg agcaatcagc
     1441 attttacaca agctaggtgt ggaaaaactg gttttcggta cggaagaaat gctggattac
     1501 cagaaaattg cggatatcta tgtggataag tcggaagaga tggaaaattt tgtgaaaaac
     1561 ttgccagata atttctctta tccacagaag acccaggcta tgtggcagga gtttgctggg
     1621 ctgactttca caggtgacac gcccaaccat attctggctc tagcttacgc taaggcagtg
     1681 gctggaacag gcattcagct cagccctgtt caacggcagg gagctggttt tcattcggaa
     1741 gaggtggaaa cgtcctacgc ctcggcgaca gctatccgca agggtgctga ccagctggac
     1801 ttggttcgcg gctttttacc gtctgtcagt cttttcgaag aggcgaccaa ggtaagctgg
     1861 agaaactatt ttccgctgct ccgctaccag attgcgaccc acccagatct cagtcaggtc
     1921 tttcaggtca acgaagaact agccagtcgt atccgctctg ccattgggag cgtagcgacc
     1981 gtggaggagt tagtggatgc cgttgcgacc aagcgctaca ccaaggcgcg ggtgcggcgg
     2041 gtgctgacct acatcctgat caatgcggtg gaaactccct tgccagaagc ggtccatgtc
     2101 ctaggctttt caactcgagg ccaggcctat ctcaagcagg tcaaggagcg ggtggacctg
     2161 gtgacgcgga tcggcaaaga gccctgggac agcctgaccc agcaggcgga tgcggtctat
     2221 caactgggcg ctgacgcaat ggcagagcag acctatgggc gcgtgccggt gagggtggag
     2281 tgagatgaag aaagagatga gtcaactaga agcctacaag gcggaagcaa aggaacgctg
     2341 gggacagacc gcgacctatg ccgagtttga agtacgctat gatgctagca aggaccactt
     2401 gtttgcccaa gagatgcagg ctatttttga agcttttgga aaaatgcaga gcttgggagc
     2461 cgttcatcca gatgtgcagg ctcaggtagc gaacttgcag gcctatatca cggaaaattt
     2521 ctacacctgc acaaaggaaa tcttgcaaaa tataggtctt atgtatgttg aggacgagcg
     2581 attttcagcc aacattgacc gagcaggtgg actaggaaca gcagcctttg tcagtcaagc
     2641 tattgcgatt tattgccaag aataaacgaa agaagtctgg tgaga
//
LOCUS       DASGBY010000174         2674 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.175, whole genome shotgun sequence.
ACCESSION   DASGBY010000174 DASGBY010000000
VERSION     DASGBY010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.175"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..694
                     /locus_tag="U1396_001903"
     CDS             <1..694
                     /locus_tag="U1396_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5343046.1"
                     /translation="KVLKKGNQVRIVSVGRLTEGKNQLELIKAYKTLNRLDIELVFIG
                     GWDSKYKAICDEYIHENKLQKNVKFLGNLDNPWEEVTDRDICVFPSSMETFGLVYVEA
                     ILRGLPVILSDNLGHLTAFEIFSAGQIYKLGDIEELVTKLEQVIESFRNFSDRALFDV
                     ERLRTLYTPEVAYKEILNSINHLEYTGHQNTNLSHIKELLTLNMHPKRLERYARLISK
                     IATKIRHKLRLQ"
     gene            795..1511
                     /locus_tag="U1396_001904"
     CDS             795..1511
                     /locus_tag="U1396_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5343047.1"
                     /translation="MKVLMIIPAYNEEESILQTVQGIIDYRNSVNFQLDYVVINDGST
                     DHTKEILIQNKLNAVHLVQNLGIGGAVQTGYKYALDNDYDVAVQFDGDGQHDIRSLNS
                     LIQPILVGQADMVIGSRFVGDTLSEFQTSFMRRFGIGVISNMIKLTTGNRIWDTTSGY
                     RLGNRKVIVQFAKRYPIKYPEPESTVHLLKQNFQVVEAPANMFERAGGVSSITPLKSI
                     RYMVEVCSSILIASLMKEGE"
     gene            1511..1867
                     /locus_tag="U1396_001905"
     CDS             1511..1867
                     /locus_tag="U1396_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2304 domain-containing protein"
                     /protein_id="HEM5343048.1"
                     /translation="MTIQALAMFLASLGFLYFIFRNINKNKILFEHAFMWIVIGFGLI
                     VFALFDVIPIKLAYLFGFGLTSNFLLSVAIFVLLVIGFLHSMALSQQKQQIKNLIQEV
                     SMAKKRISELEEHHAE"
     gene            1857..2627
                     /locus_tag="U1396_001906"
     CDS             1857..2627
                     /locus_tag="U1396_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5343049.1"
                     /translation="MQNNHTFVICAYGDSKYLEECIHSLKQQTLQSQLILYTSTPSEY
                     IEQICQKNAIVMHTAQGGGIGKDWNLALSFVTTPYATIAHQDDIYLPDYCEKIMSQMT
                     EETLIAYSDYQEVKEGVAIPLTSNLKIKQLMLRTMAMFPKWKFWRNRVLAFGNPISCP
                     AVTYNLKKLNDFKFNEEMKVSLDWFAWYQIAQKNGSFTFVDESLMYHRIHEESETTNS
                     IENNIRTQEDYEMYLLFWPKFIAKFLLSYYVKSQETNN"
BASE COUNT          909 a          389 c          517 g          859 t
ORIGIN      
        1 aaaagtttta aaaaaaggca atcaagttag aattgtttct gttggtcgat taacagaagg
       61 aaaaaatcaa ttagaactta taaaagcata taagacacta aatagattag atattgaatt
      121 ggtttttatt ggaggatggg atagtaaata caaagctatt tgtgatgaat atatccatga
      181 aaataaatta cagaaaaatg ttaaattttt aggtaactta gataatcctt gggaagaagt
      241 gactgataga gatatctgtg ttttcccctc atctatggaa acttttggct tagtctatgt
      301 tgaagcaatc ttaagagggc ttccagtaat tctatcagat aatttaggac atttgacggc
      361 atttgaaata ttctcagcag gtcaaattta taaattgggc gatatagaag agttggtgac
      421 taagttagag caagtgattg aatcctttag aaatttttca gatagggcac tgtttgatgt
      481 ggaacgttta cgtactctat atacaccgga agttgcctat aaagaaatac tgaacagcat
      541 caatcactta gagtatactg gacaccaaaa tacaaattta agtcacataa aagagttgct
      601 gactttaaat atgcatccaa aaagattgga gcgttatgca agattgatca gcaagatcgc
      661 gacaaaaatc agacataaac ttcgacttca atgaagaata ggatagctat gctaaaatat
      721 gtatattatg gtttcttcaa atgagtaagt agaatctaaa aagttatata gaattctagt
      781 tttagagaga aaaaatgaaa gtattaatga ttatccctgc ctacaatgaa gaagaaagta
      841 tccttcaaac tgttcaggga attatagatt atagaaatag tgtgaatttc caattggatt
      901 atgttgtcat caatgatggt tcaacagatc acacgaaaga aattttgatt caaaataaat
      961 taaatgctgt tcacctagta caaaatttag gtattggtgg agctgttcag acgggatata
     1021 aatatgcctt ggacaatgac tatgacgtag cagttcaatt tgatggtgat ggtcagcatg
     1081 acattcgttc attaaatagc ttaattcagc caatcttagt tggtcaggct gatatggtga
     1141 ttggctcacg ctttgttggt gatactttgt cggaatttca aactagcttt atgaggcgtt
     1201 ttggaatagg tgttatttca aatatgatta aattaacaac tggaaaccga atttgggata
     1261 ctacatcagg ttatcgtttg ggaaatagaa aagtgattgt acaatttgca aaacgatacc
     1321 caattaaata tccggaaccg gaatcaactg ttcatttact aaagcaaaat ttccaagtag
     1381 tagaagcacc ggcaaatatg tttgaaagag cgggaggggt ttcatccata acacctctaa
     1441 aatcgattcg ttatatggtt gaggtttgtt catcaatctt gattgcatca ttaatgaagg
     1501 agggagaata atgaccatac aagcattagc tatgtttctt gcctcactag gttttttgta
     1561 ttttattttt aggaatatta ataaaaataa gatcttattc gaacatgcct ttatgtggat
     1621 tgttattggc ttcggactga ttgtttttgc gctctttgat gttattccta ttaaattggc
     1681 ttacttattc gggtttggtc tgacttccaa tttcttgtta tctgtggcaa tttttgttct
     1741 cttggtgatt ggatttttgc atagtatggc tttatctcaa caaaagcagc agattaaaaa
     1801 tttaattcaa gaagtatcaa tggctaaaaa aagaatctct gagttggagg agcatcatgc
     1861 agaataacca tacatttgtt atctgtgctt atggagacag taagtatcta gaagaatgca
     1921 tccattcgtt aaagcagcaa acacttcaat cacaactcat cctatacact agtactccga
     1981 gtgaatatat agaacaaatt tgccaaaaga atgcaatcgt aatgcatacc gcacaaggag
     2041 gaggtattgg aaaagattgg aatctagcac tctcttttgt aacaacccct tatgctacga
     2101 ttgcccatca agatgatatt tatttaccag actattgtga aaaaataatg tctcagatga
     2161 cagaggaaac attgattgct tattcagatt accaggaagt taaggaaggt gtggctattc
     2221 ccttaacttc aaatttgaaa atcaagcaac tcatgttacg gacaatggcc atgtttccca
     2281 aatggaagtt ttggcggaat agggttttag cctttggtaa tccaatttct tgtccagctg
     2341 tgacctataa tttgaagaaa ctgaatgatt tcaagtttaa tgaagaaatg aaagtttctc
     2401 ttgattggtt tgcttggtat cagattgcgc aaaaaaatgg gagctttacc tttgtagatg
     2461 agagtctgat gtatcatcgt atccatgagg aatctgagac gacaaatagc attgaaaaca
     2521 atattcgtac acaagaagac tatgaaatgt atttgttgtt ctggccaaag tttattgcca
     2581 agtttctcct gagttactat gttaagagtc aagagacgaa taattaaaat attttagtta
     2641 ccaatcattg tattcccatc aattcctact caaa
//
LOCUS       DASGBY010000175         2628 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.176, whole genome shotgun sequence.
ACCESSION   DASGBY010000175 DASGBY010000000
VERSION     DASGBY010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.176"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(126..668)
                     /gene="lepB"
                     /locus_tag="U1396_001907"
     CDS             complement(126..668)
                     /gene="lepB"
                     /locus_tag="U1396_001907"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5343050.1"
                     /translation="MVKRDLIKQISLLVLLILGIIGLRFWLLEPVTITPEMANSYLKE
                     NDFIMTVRNVRPIHGDFILYNHEGKEYVSRVIALENETVTYMDDVLYRNDIIITENYL
                     KTPHSQESYTDDFTLETLTNGKYNVIPEGHYLVLNDVRTNQQDSRSFGLISSEAIVGR
                     LTFRISPLSEFGFIKTGLVQ"
     gene            complement(711..1328)
                     /locus_tag="U1396_001908"
     CDS             complement(711..1328)
                     /locus_tag="U1396_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HEM5343051.1"
                     /translation="MSDIMYPEVLTVGSGAVKVATVGDSLTYGYGLENREKDAYPCIL
                     AEKLGHHYQVSNYGLSGRSLQSTADFPYFKEKNAQLSLESEADIVIIMIGSNDSRGPY
                     WNRERFIREYREMAEQYMDLPSQPDVYLVIPPYVPTSRFGLNNQIIEDELQKIIPAIG
                     NELGLPVINLYTVTEGHLEYYSDGLHLTPLGNQVIAEEIYQHLRH"
     gene            1413..2522
                     /locus_tag="U1396_001909"
     CDS             1413..2522
                     /locus_tag="U1396_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEM5343052.1"
                     /translation="MKKQVIIIGGGIVGSTVAFYLSQEEQVNLTLIDSGIGTATRAAA
                     GIICPWMAQKKNKDWYKLTSDGAVFYRQLVADLEKSGATEIPFKQTGTIGLKSKPELL
                     DKIQKIAEERRVDTPTIGEITPLIGSEINQYLPLLKPDYFGIHLEGGGRIDGGRLIDI
                     LQEQFLKNGGTRIYGQAKLLDNHTVEVDNQVLTADHIILATGAWLPHILEPLGYQVDV
                     RPQKGQLFELDTEFDTDNWPVCMPYGEIDILPFENGKIIIGATHEDDMGYDLELDPEK
                     IQAMHDKIAEFMPDLANYPVARTRIGTRAYTSTYSPFYGNIEDMPNVWVASGLGSTGL
                     TNGPIIGWQIAKEILNQETNFDRTPYSPNRYILKK"
BASE COUNT          836 a          560 c          457 g          775 t
ORIGIN      
        1 gaactttaaa acaaagatat atattgcttt aaacatcaaa aatgagagaa cgaatttcgt
       61 cctctctagg tgttagcttt tcgtctaccc actacagttg acaaagagcc taaaaaaagc
      121 tgattctact gaaccagccc tgtcttaata aaaccaaatt ctgaaagtgg actaatccga
      181 aaagtcagtc taccaacaat agcctcacta gaaatcaaac caaaactacg actatcctgt
      241 tgattcgttc gtacatcatt caacaccaaa tagtgcccct ctggaatgac gttgtacttt
      301 ccatttgtca aggtttccaa tgtaaagtca tctgtataac tttcttgtga atgaggcgtt
      361 tttaaatagt tctctgtaat aataatatca ttacgataga gaacatcgtc catataggta
      421 accgtctcgt tttccaatgc aatcacacga ctcacatact cttttccctc atggttatac
      481 aaaataaaat ctccatgaat cgggcggaca tttcgcactg tcatgataaa gtcattttcc
      541 ttcaaataac tatttgccat ctcaggggta atcgtgactg gctcaagtaa ccaaaatcgt
      601 aggccaatga ttcccaaaat caataagacc aataaactga tttgttttat taaatctctt
      661 tttaccataa tctctccatt tcactagtat tataccacaa tttagagcca ttagtgtctg
      721 agatgctggt aaatctcttc agcaataact tgatttccta acggtgtcaa atgaagacca
      781 tcgctatagt attcaagatg tccctccgtc acagtgtaaa ggttaataac tggtaaacca
      841 agttcgtttc cgatagctgg gataattttt tgtaattcat cttcaataat ttgattattc
      901 aatccaaaac gactggttgg tacgtaaggc gggatgacta aataaacatc cggctggctt
      961 ggtaaatcca tatactgctc tgccatttcc ctatactctc gaataaacct ctccctattc
     1021 caatatggtc ctcggctatc gttactacca atcatgatga tgacaatatc tgcttcactc
     1081 tcaagtgaaa gttgggcatt cttctcttta aagtaaggaa aatctgcagt tgactgaagt
     1141 gaacgcccac tcaatccata atttgaaact tgatagtgat gcccaagttt ctcagctaga
     1201 atacaaggat aggcatcttt ttcccgattc tccaagccat atccataagt caaactatct
     1261 ccgactgttg caacttttac ggccccactt ccaacagtta ggacctcagg atacattata
     1321 tctgacacac gaactcctca atttttctta ttttctattg tatcatgttg aaaaaaataa
     1381 ataaacttcc gaatttgtga tataattaac ttatgaaaaa acaagttatt attataggcg
     1441 gaggaattgt tggctctact gtagcctttt atctctccca agaagaacaa gtcaatctta
     1501 ctctcattga ttcaggtatt ggaacagcca cacgagctgc cgcaggtatc atctgcccat
     1561 ggatggctca gaaaaaaaat aaagactggt ataagctgac ttccgatggt gctgttttct
     1621 accgtcaatt ggtagccgat ttggaaaaat cgggtgctac tgaaattcca ttcaaacaga
     1681 ctggaaccat cggcctaaaa agtaagcctg aactacttga taaaatacaa aaaattgccg
     1741 aggaacgtcg cgtagatact ccgactattg gcgaaattac tccgcttata ggctcggaaa
     1801 ttaaccagta cctgccacta cttaagccag actattttgg tatccattta gaaggtggcg
     1861 gtcgtattga tggtgggcgt ttgattgata ttcttcagga acaatttttg aaaaatggtg
     1921 gtacacgtat ctacggacaa gcaaaactgc tcgacaacca tactgtcgaa gtagataatc
     1981 aagtgcttac tgctgaccat attatcttag ccacaggggc ctggttgcca catattcttg
     2041 aacctcttgg ttatcaagtg gatgttcgac cacaaaaagg acaattgttc gaattagata
     2101 cagaattcga taccgacaat tggccagttt gtatgcctta cggagagatt gacatcctac
     2161 catttgaaaa tgggaaaatc attattggtg caactcatga agatgacatg ggctacgatt
     2221 tagaactaga ccctgaaaaa atccaagcca tgcatgataa aatagctgaa ttcatgcctg
     2281 atttggcaaa ctatcctgta gccagaactc gcattggaac gcgcgcctat acttcaactt
     2341 attcaccatt ctacggaaat attgaggata tgcctaatgt ctgggtagct agtggtctgg
     2401 gctccaccgg tctgacaaac ggtccaatta tcggttggca aattgctaaa gaaattctca
     2461 atcaagaaac aaactttgac cgtacaccat attctccaaa tagatatatt ctcaaaaaat
     2521 aagatacgat acgtttagat tctactaact ctttaaatgt agatactaag actagttgtt
     2581 atctaagcaa taaatcatga ccacccgtca aacgggtggt ttgaacaa
//
LOCUS       DASGBY010000176         2600 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.177, whole genome shotgun sequence.
ACCESSION   DASGBY010000176 DASGBY010000000
VERSION     DASGBY010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.177"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(24..866)
                     /locus_tag="U1396_001910"
     CDS             complement(24..866)
                     /locus_tag="U1396_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5343053.1"
                     /translation="MFTISNIRERARQTLNETPGIYQVAVIPVTISVIVQLISFSRNS
                     LAGVSAEELASPSYFISTSLFPVFYGLLLGMLSLSVIWTIFNIIKGGKTTTSFKDSLS
                     IFNHKDFWKIFRTYILKSFLLFLWGLLFYLGIGLLIGAGTMITIIAASSQSLDPDALP
                     MEILAILGLMAMGGILLMVLGTALYIPQIYAYSQVEYILFEQLEREEYTDAFSIIRSS
                     RKLMKGYKFKRFTLDLSFIGWFLLVIITFGLAGLYVWPYHYAAQMHFHEEILDDQAKK
                     MSYV"
     gene            1320..2462
                     /gene="tgt"
                     /locus_tag="U1396_001911"
     CDS             1320..2462
                     /gene="tgt"
                     /locus_tag="U1396_001911"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEM5343054.1"
                     /translation="MTDVPIKYRLIKKEKHTGARLGEIITPHGTFPTPMFMPVGTQAT
                     VKTMSPEELKAMGSGIILSNTYHLWLRPGDELVARAGGLHKFMNWDQPILTDSGGFQV
                     YSLADSRNISEEGVTFKNHLNGSKMFLSPEKAISIQNNLGSDIMMSFDECPQFYQPYD
                     YVKKSIERTSRWAERGLKAHRRPHDQGLFGIVQGAGFEDLRRQSAHDLVSMDFPGYSI
                     GGLAVGETHDEMNAVLDFTTPLLPENKPRYLMGVGAPDSLIDGVIRGVDMFDCVLPTR
                     IARNGTCMTSRGRLVVKNAQFAEDFTPLDPECDCYTCKNYTRAYLRHLLKADETFGIR
                     LTSYHNLYFLINLMKNVRQAIMDDNLLEFRQDFMEKYGYGKNGRNF"
BASE COUNT          814 a          492 c          561 g          733 t
ORIGIN      
        1 taagagcaaa tatcgctctt attttatacg taactcattt tcttagcctg atcatctaaa
       61 atttcttcat ggaagtgcat ttgtgcagca tagtgatacg gccatacata taaacctgcc
      121 aatccaaatg taataatgac aagaaggaac caaccaatga aagataaatc aagtgtaaag
      181 cgtttgaatt tgtaaccttt catcaacttt cggctagacc gaatgattga aaaggcgtct
      241 gtatattcct cgcgttccaa ttgttcaaac aagatatatt ctacctgtga gtaagcatag
      301 atttgtggaa tataaagagc agttcctaaa accataagta ggatacctcc catggccatt
      361 agccctagta tggcaaggat ttccatagga agtgcatcag ggtctaagga ttgactggat
      421 gcagctataa tcgtaatcat cgttccagca ccgataagta gaccgatacc aaggtaaaac
      481 agtagtcccc aaaggaagag caagaaactt tttaaaatgt aagttcgaaa gattttccag
      541 aaatctttat gattgaaaat gctcaaggaa tctttgaatg atgtggtagt tttgccccct
      601 ttgatgatat tgaagatagt ccatatgact gataatgaca acattcctag tagcaatccg
      661 taaaatactg gaaacaaaga ggtagaaata aagtagctcg gactagcaag ttcctcagcc
      721 gacactccag caaggctatt gcgagagaaa gaaattaact gaacgataac agaaatagtg
      781 acggggatga cggccacttg atagatacca ggtgtctcgt ttagcgtttg gcgagcccgc
      841 tcacgtatat tagaaattgt aaacatctac ataacctcct tatcttaaca ttgtaacata
      901 attctagatg acaagctagg ctttttttga tagactggaa ggtgctgtgg tatagtcgtt
      961 tagtttgctt ttatgaagta cggcagagcg agttcaaata ctctagtgga gtgtttgaag
     1021 ttggaaataa ggaaacgaag tttcctcgct cgtcgaagca atcaaagata aactaaatga
     1081 ctataatttg tcagtttgtt gtgatgcgcc tatctattta ctattaaata agtagaagac
     1141 aaggtaaata tcgctgaaat aagcgagaac attaaagaca ttctgatgga ttagaccatg
     1201 caagattgag aaactgtatt tccaggtaaa gtacttttat ggatgatatg aaagagctga
     1261 actgtgaatc cagaactaat atcctaggac tgtttttcct agcgggaggt aaataaaaca
     1321 tgacagatgt tccaatcaag tatcgcttga ttaagaaaga aaagcacaca ggtgcacgtt
     1381 tgggcgaaat cattacccca cacgggacct ttccaactcc gatgtttatg ccagttggaa
     1441 ctcaggcaac ggtaaaaacc atgtcgcccg aagaattgaa ggcgatgggt tcaggaatta
     1501 tcctatctaa tacctatcat ttgtggcttc gtccaggtga cgaattggtg gcgcgtgcag
     1561 gcggtttgca caaatttatg aattgggatc aaccgattct gactgactca ggtggtttcc
     1621 aggtttattc tttggcggat agtcgcaata tctcagaaga aggtgtgacc ttcaaaaacc
     1681 atctcaatgg tagtaagatg ttcctgtcac ctgaaaaagc tatctctatt cagaacaatc
     1741 ttggctctga cattatgatg agctttgatg agtgtccgca gttctaccag ccttatgact
     1801 atgtaaaaaa atccatcgaa agaacaagtc gttgggcaga acgtggtctc aaggctcacc
     1861 gccgtccgca tgaccaaggt ttatttggta ttgtccaagg tgctggtttt gaagatcttc
     1921 gtcgccaatc agcccatgat ttggtcagca tggattttcc aggatactct attggaggat
     1981 tggctgttgg tgaaacacac gatgaaatga atgcagtact ggacttcacg acccctcttt
     2041 taccggagaa taaaccacgc tatctcatgg gcgttggagc accagatagc ttgattgatg
     2101 gcgtaattcg tggggttgat atgtttgact gtgtattacc aacacgcatt gcgcgtaatg
     2161 gaacctgtat gaccagtcgt ggacgtcttg tggtgaaaaa tgctcagttc gctgaggact
     2221 ttacaccgtt agatccagag tgcgattgct acacatgtaa aaactataca cgtgcgtatc
     2281 tccgccattt acttaaggcc gacgagacat ttggtattcg tttgacaagt tatcacaacc
     2341 tctacttctt gattaatttg atgaaaaatg tccgtcaagc aatcatggat gacaaccttt
     2401 tggaattccg tcaagacttt atggaaaaat acggttacgg taaaaacgga cgtaattttt
     2461 agataaaaca gccttctttg tggacttagc cttgttctca tactcaatga aaatcaaaat
     2521 caaactaggc gacgcagatg cagatagaac tgaagttcat caaatcaagt caacaacgtc
     2581 tgattttgat tttcgaagag
//
LOCUS       DASGBY010000177         2577 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.178, whole genome shotgun sequence.
ACCESSION   DASGBY010000177 DASGBY010000000
VERSION     DASGBY010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.178"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..1258
                     /locus_tag="U1396_001912"
     CDS             <1..1258
                     /locus_tag="U1396_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5343055.1"
                     /translation="TKYQLTAKEREIAEKVPSITKKNNCFRCGTTFKEENKLPNDAYY
                     CRACLLLGRVRSDEKLYHFPQKDFPITKCLKWKGQLTDWQQRISDGLVANVENNRATL
                     VHAVTGAGKTEMIYHTVASVIDKGGAVCLASPRIDVCIELYKRLQNDFSVPISLLHGE
                     SEPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPMLYQAADNAVKEAGVQV
                     FLTATSTDELDKKVRTGKLSRLSLPRRFHGNPLVVPQKVWFSKFDDTLKKNRLVPKLK
                     KAIEEQRKSGFPLLIFVPEISKGQEFTKIMKKTFPEETIGFVSSQTENRLEIVEGFRK
                     REITVLISTTILERGVTFPCVDVFVVQANHYLYTASSLVQIAGRVGRSIERPTGLLQF
                     YHEGSTGAIEKAIAEIKQMNKEAGYV"
     gene            1251..1916
                     /locus_tag="U1396_001913"
     CDS             1251..1916
                     /locus_tag="U1396_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEM5343056.1"
                     /translation="MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQ
                     HCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYNQAMAHYFSRYKFQGDYVLRNIF
                     AKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
                     SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFS
                     LTR"
     gene            1993..2535
                     /gene="raiA"
                     /locus_tag="U1396_001914"
     CDS             1993..2535
                     /gene="raiA"
                     /locus_tag="U1396_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEM5343057.1"
                     /translation="MIKFSIRGENLEVTEALRTYVEEKVAKIEKYFNEEQELNAKVNL
                     KVYRDKRAKVEVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKHRQ
                     KVATGQVFTDELVEQTGEEVKVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDANDG
                     TTNVLYRREDGDLGLLEVRQ"
BASE COUNT          911 a          452 c          526 g          688 t
ORIGIN      
        1 taccaaatac caattgacag caaaagaaag agaaatagca gaaaaagtgc caagtattac
       61 aaaaaagaat aactgctttc gctgtggaac aacttttaaa gaagaaaaca aattgccaaa
      121 cgatgcttat tactgtcgag cctgcttgct tctaggcaga gtacggtcag acgaaaaact
      181 ctatcatttt cctcagaaag attttccaat cactaagtgt ttaaagtgga aaggtcaact
      241 aactgattgg caacaaagaa tttcagatgg actagttgca aacgtggaaa ataatcgtgc
      301 gacattggtt catgcagtaa caggagcagg taagacagaa atgatctacc acaccgttgc
      361 ctcagtgatt gataaaggcg gagcggtttg cctagccagt cctcgaattg atgtttgtat
      421 cgaactctat aaacgtctgc aaaatgactt ttcagttcca attagtttac tacatggaga
      481 gtctgaaccc tatttccgaa ccccattagt tgtagcaacc acacatcagt tattaaaatt
      541 ttatcaggcc tttgatttgg ttttgattga tgaagtagac gcctttccct atgcagataa
      601 tcccatgctc tatcaagcag cagacaatgc ggtcaaggaa gccggtgttc aagtttttct
      661 gacagcgact tcaacagatg aattggataa aaaagtcaga acaggtaaat taagtcgtct
      721 tagtttgcca aggcgctttc atggcaaccc acttgttgtc ccgcaaaaag tctggtttag
      781 taaattcgat gataccctaa agaaaaatag actagtccca aagttgaaaa aagcgattga
      841 agaacagaga aagtcgggct ttcccttact catttttgtc ccagaaatct ccaaaggtca
      901 agaatttacc aagataatga aaaaaacatt cccagaagaa acaattggct ttgtatccag
      961 tcaaacagaa aatcgccttg aaatagttga agggtttcgc aagagagaaa tcacagtctt
     1021 aatctcgact actattcttg aacgtggggt gaccttccca tgtgtagacg tctttgttgt
     1081 tcaagctaat cattacctct acacagcgtc aagtcttgtt cagattgcag gccgggtcgg
     1141 aaggagtata gaacgtccga ctggtttact tcagttttat catgagggaa gtacaggagc
     1201 cattgaaaag gcaatcgctg aaattaaaca gatgaacaag gaggctggtt atgtctaatt
     1261 gtctattgtg cggtcaagct atgaaaaata aaacaagatt ttcagatctc atcttcttta
     1321 gtaaagaaaa atcgggcatc tgtgaagaat gtttttcgac ttttgaggaa atagcagagc
     1381 aacactgtcc acattgttat aaaaatggag aatcggaaag ttgcaaggat tgtcagtact
     1441 ggcagaatca agggaaacca gttgtccaca cagctttgta ccaatataat caagcgatgg
     1501 cacattattt tagtcgctac aaatttcaag gagactatgt tttaagaaat atttttgcta
     1561 aaaagcttag aatagcgtta agccaatttc ctgactacac aattgttccc ataccaatta
     1621 gtcaaaaacg actatcagaa cgcggtttta atcaagtgga aggacttttg gatgctacaa
     1681 atattcctta tcagtccctt cttggaaagt atgaaagcca aaaacaatca tctaaaaatc
     1741 gtgcagagag actagaagca aaacagatgt tctatctatt agatgaaaaa gaagtgccag
     1801 aaaaaatatt attattcgac gatatatata caacaggagc cacaatccaa cttgctgtag
     1861 aacttttcat gaaaattggt aggaaagaaa tcaaaacatt ttcactaaca cgataagaaa
     1921 acggttgcaa tattcctata atgtggtata ataatagtga agaaaggcga aagccaagaa
     1981 agaggtacta atatgattaa attcagtatt cgtggagaaa accttgaagt tacagaagca
     2041 cttcgcacct atgtagaaga gaaagtggct aagattgaga aatatttcaa tgaagaacaa
     2101 gagttgaatg ctaaagtaaa tctaaaagtt taccgtgaca agcgcgcaaa agtagaagtg
     2161 acaattccag ttggagcagt tacacttcgc gcagaagata tttcacaaga aatgtatggc
     2221 tctatcgatc ttgtagtaga taagattgaa cgccaaattc gtcgtaacaa aaccaagatt
     2281 gaacgaaaac atcgtcaaaa agtggcaact ggtcaagtct ttacagatga acttgttgag
     2341 caaacaggtg aggaagtaaa agtggttcgt actaagcaag tagacttgaa accaatggat
     2401 atggaagaag cagtcctcca attggagttg ctcggacacg atttctttat ctatacagat
     2461 gctaatgacg gtacaacaaa tgtattgtat agacgcgaag atggagattt gggtcttcta
     2521 gaagtacgtc aataaagata ataaaacagt tgcagttttt gcagctgttt tattatt
//
LOCUS       DASGBY010000178         2421 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.179, whole genome shotgun sequence.
ACCESSION   DASGBY010000178 DASGBY010000000
VERSION     DASGBY010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.179"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            91..792
                     /locus_tag="U1396_001915"
     CDS             91..792
                     /locus_tag="U1396_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEM5343058.1"
                     /translation="MKKYAFREGMRDAIPTVLGYASIGLACGVVSVNSGISTVEMGLM
                     SLLIYAGSAQFVMCAMIFAGAPLLSIAVTVFFVNLRNFLMCLHATTIFQGNRLGSNIL
                     IGSFVTDESYAVLLRKQIEHHTITPEWMYGNNFASYASWVTFTTLGNLIGGLIPNPEQ
                     FGLDFALVAMFVGIFAGQLEAMVRTIPLKKIGLILLAVGLTYIGLSMMVSSYVAVLLA
                     TLLGCFVGVMIDDKN"
     gene            779..1102
                     /locus_tag="U1396_001916"
     CDS             779..1102
                     /locus_tag="U1396_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEM5343059.1"
                     /translation="MIKTNILLIILMAALVTWVPRVLPFVLTQNKSLPPKLVKFLSFL
                     PITIIFALTLSSIMDEKVGSLPSFLPVESLAILPTFFVVLKTKNILLAVLVGVVTTAL
                     LRLIF"
     gene            1112..2134
                     /locus_tag="U1396_001917"
     CDS             1112..2134
                     /locus_tag="U1396_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HEM5343060.1"
                     /translation="MVKENAKGVGLCFLLALVGQWLGHLFPLVGGPVFALLIGMSLYP
                     YFSSKNAFQSGLTFTSKKILQYAVICLGFGLNLSAVLAVGRQSLPIIFSTISFALILA
                     FLMWKILPISSHLATLIGVGTSICGGSAIAATAPIIQADDEDVAQAISVIFLFNVLAA
                     LVFPTLATWLGFSTDSGQVFGMFAGTAVNDTSSVTAAASTWDSLYGLGSQTLDTAVTV
                     KLTRTLAIIPITTVLAIWQTRGKGVQADKKSLLAGFPVFILYFILASLITTIAGGFGI
                     GADWFAPLKSLSKVFICMAMVAIGLRTNVFALVKNGRAALLVGLVCWFGVTALTLVWQ
                     AILGIW"
BASE COUNT          568 a          459 c          588 g          806 t
ORIGIN      
        1 agatataaga attcttgaaa aacgggttgc aatgtgagaa aatgagagaa taattcttca
       61 atcaattagt gagaggaagg gagataatga atgaagaaat atgcttttcg tgaagggatg
      121 cgcgatgcca ttcccactgt attgggctat gccagtattg gtctagcctg cggagtcgta
      181 tcggttaatt cgggcatttc tactgtggag atggggctga tgagcctatt aatctatgcc
      241 gggagtgctc aatttgttat gtgtgctatg atttttgcag gtgcgccttt gttatccatt
      301 gcagtaaccg ttttctttgt caacctgcga aattttctga tgtgcttgca tgcgacaact
      361 atttttcaag gaaatcgttt agggtcgaat atcttgatag gatcctttgt gacggatgaa
      421 tcctatgcag ttcttttgcg taagcagatt gagcatcata ccattactcc agaatggatg
      481 tacggaaata attttgcaag ctacgcctct tgggttacat tcacgactct cggcaatctg
      541 attggtggtc tcattccaaa tcctgagcag tttggattgg actttgcctt ggttgccatg
      601 tttgtcggta tttttgcagg tcagttagag gctatggttc ggaccattcc gctgaaaaaa
      661 attggcttaa ttctgctggc agtcggtctg acctatatcg gtctgtctat gatggtgtcg
      721 tcctatgtgg cggtgctctt ggcgacacta ttaggttgct ttgtgggggt gatgattgat
      781 gataaaaact aacattttac tgattattct aatggcggcc ctggtgacct gggtgccacg
      841 cgtcctgcct tttgtcctga cgcaaaataa atctctccct ccaaagttgg tgaaattcct
      901 cagctttttg ccaatcacta tcatttttgc attgaccctc tccagtatta tggatgagaa
      961 agttggctcc ttgccaagtt ttctccctgt ggaaagctta gctattcttc cgacattttt
     1021 tgtggttttg aaaacaaaaa atatcctttt agcagtcttg gttggcgttg ttacaaccgc
     1081 gttgttacgt ttgatatttt aggaggtttt tatggtaaaa gaaaatgcca aaggtgtcgg
     1141 actttgtttc cttttggctt tggtgggtca gtggttaggt catttatttc cacttgtagg
     1201 tgggcctgtt tttgcccttc taattgggat gagcctgtat ccctattttt caagtaaaaa
     1261 tgcatttcag tcaggcttaa cctttacttc taagaaaatc ttacagtatg ctgtgatttg
     1321 tttgggattt ggattaaact tatcagcggt cttggcagtt gggcgtcaat ctcttccaat
     1381 tattttttcg accattagtt ttgctttgat tttggcattc ctgatgtgga aaatcttgcc
     1441 catttcatct catctggcaa ccttgattgg cgtaggtacc tctatctgtg gaggctctgc
     1501 cattgcggcg actgctccca ttattcaggc agatgatgag gatgtggcac aagcaatctc
     1561 ggtcatcttt ctctttaatg tcttggcagc cttggtcttt cctactttgg caacttggct
     1621 tgggttttcg actgattcgg gtcaggtctt tggaatgttc gctggaacgg cggtcaatga
     1681 tacctcctct gtgacagcag cggcttcgac ctgggatagc ttgtatggtt taggtagtca
     1741 gaccttagat acagcagtga cggttaagtt aacacgaact ttagctatta tcccgattac
     1801 aacggtctta gcaatttggc aaacccgagg gaagggagtt caagcagaca agaagtccct
     1861 cttggcaggt tttccggtct ttatcttgta ttttatctta gctagtctaa tcacaacgat
     1921 agcgggtgga tttggtatag gggcagattg gtttgctccg ctgaagtccc tctctaaagt
     1981 tttcatttgt atggctatgg tggcgattgg tttgcggaca aatgtgtttg ccttggtgaa
     2041 aaatggcaga gcggctctcc tagtcggact agtttgctgg tttggggtaa cagcgttgac
     2101 actggtttgg caagcaattt tggggatctg gtaaatatag tcttttagtt tacttttagt
     2161 actcgctcca actatctggg agatagttgg agactgggga taaagtgaac gatgttcaca
     2221 tcaaaagcag cagacataac tcaatgcttt cttatttcta ggcattgact tgaaacagtc
     2281 ccccagactg tttcaatcag gcaaggcgag ttcaaacact ccagtggagt gtttgaagtt
     2341 ggaaataagg aaacaaagtt tcctcattcg tcgaagtaat aaaagagaaa ctaaatgacg
     2401 agaaaacagc cttctcttgc g
//
LOCUS       DASGBY010000179         2420 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.180, whole genome shotgun sequence.
ACCESSION   DASGBY010000179 DASGBY010000000
VERSION     DASGBY010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.180"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..469)
                     /locus_tag="U1396_001918"
     CDS             complement(<1..469)
                     /locus_tag="U1396_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5343061.1"
                     /translation="MKRILFISPTTSMDNGAEKSIYYLMKYLIQLGHTVINVTHAIGG
                     EPQDKHEQLYKMIGVKNYYLPTVKWWWPDAPGGEILNREEATSYYRQNVQDIAEIIDQ
                     NEIDLVISNTVNVFQGAIAASCQKVPHFWLIHEFPKNEFAYYADKIDFIEEYSS"
     gene            complement(469..2367)
                     /locus_tag="U1396_001919"
     CDS             complement(469..2367)
                     /locus_tag="U1396_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5343062.1"
                     /translation="MQRDKQRRNNYSDIKNRYLIYTIYEHQSSLQDYKVIFLEALAKI
                     SRDVLIVVNGKLPQADINRLAQFGKVLERDNEGYDVAAFRHGIIHTGKEALQQYNQLI
                     LVNDTNIGPFRDLEEVFSEFNSDQLDFWGISMGEEQLDFTGYNPYGKIPKHLQSYFVV
                     IENSLLRYEGFYDYWEKLSDTDSRNKAIGKHETVFAKYFYDRGFKYDALIKDTKDSAL
                     YIHPFKLLKQGCPLVKYSAFRNYDREQYFWHGLERESEIPDLMEYIAKETDYPIEVVS
                     SILEDFKTRENQSYILIIDGVENIIPQCTRYRVLNKAEQLRELGYTVRVINNSLVQLQ
                     DAQFASHIIIYRAPFNDMLKEICRAAHIKNRPVYFDIDDLVFDTKFTDELEFTQGLSK
                     REKKGYDTSVLAYKKMLSLCDYAITSTSKLKDELEQYKNKVILNRNVMSKELVEHSLQ
                     VKKNSNDNKVKIGYFSGSITHNENFDLISQALLHLLQKYPQVELHIVGYLDIPKPFQK
                     FKKQIVSHEYVDWRKLPILISQVDINLAPLVTTTFNEAKSEIKWIEAAAVKVVTVASN
                     LGAFEEMIQDGVTGVLADDNEWESKLERLILEQDLREQIAENAFEFVMNHCTTANRIN
                     DFLKEELV"
BASE COUNT          764 a          483 c          339 g          834 t
ORIGIN      
        1 ctgaagaata ctcttctatg aagtcaattt tatcagcata ataagcaaac tcatttttag
       61 gaaattcatg aattagccag aaatggggaa ccttttgaca tgaggcagca attgctcctt
      121 gaaaaacatt aacagtattt gaaataacta agtctatctc attttgatca ataatttcag
      181 ctatgtcttg aacattctgg cgatagtagc ttgtagcctc ttctctatta aggatttctc
      241 cacctggtgc atccggccac caccacttga ctgttggcaa atagtaattc ttaaccccta
      301 tcattttata aagttgctca tgcttatctt gtggttcccc tcctattgca tgagtaacat
      361 ttataactgt gtgtcccagt tgaataaggt acttcattag ataataaata gacttctccg
      421 caccattatc catactagtc gtaggagaaa taaacaaaat acgtttcatt agactaactc
      481 ttctttcaaa aaatcattaa ttctatttgc tgtagtgcaa tgattcatta caaactcaaa
      541 agcattttct gctatttgtt ctctcaagtc ttgttcaaga atcaatctct ccaatttact
      601 ttcccattcg ttatcatctg ctagaactcc agtcactcca tcttgaatca tctcttcaaa
      661 tgctccaaga ttacttgcaa ctgtcacaac tttaactgct gccgcttcta tccatttaat
      721 ttccgacttt gcttcattaa aggttgtggt tacaagcggc gccaagttaa tatcaacttg
      781 tgaaattaaa attggaagct ttctccaatc aacatactca tgactcacaa tctgtttttt
      841 gaatttttgg aatggtttcg gaatgtctaa atatcctact atatgtaatt ccacttgcgg
      901 gtacttttga agtagatgta gcaatgcttg actaattaaa tcaaaatttt cgttgtgtgt
      961 aattgaccct gagaaatatc ctattttaac tttattgtcg ttcgaatttt tcttaacttg
     1021 taaactatgc tcaactaatt ctttagacat gacgttgcga ttcaagataa ccttgttttt
     1081 atattgttca agttcgtctt tcaatttcga agtcgatgtg atagcataat cgcagagaga
     1141 aagcattttt ttgtaagcta agacacttgt atcatagcct tttttctctc tcttgctcaa
     1201 gccttgggta aattcaagtt catctgtaaa ttttgtatca aaaaccaaat catcaatatc
     1261 aaaataaaca ggtctgttct ttatgtgtgc cgccctacat atttctttca gcatatcatt
     1321 gaatggagca cgataaataa taatatgact agcaaactgt gcatcctgaa gttgtacaag
     1381 agaattattt atcactcgaa ctgtataacc aagttctcgc aattgctcag ccttatttaa
     1441 cacacgataa cgtgtacatt gtggaataat attttcgaca ccatcaataa tcaaaatata
     1501 agattgattt tctctagttt taaaatcttc taatatagaa gacaccactt caatcggata
     1561 gtctgtttcc ttagcaatat actccatcaa atccggaatc tcagattctc tttctaaacc
     1621 atgccaaaaa tattgttctc tgtcataatt tctaaaggcc gaatacttaa ctaatggaca
     1681 accttgcttt aataatttaa acggatgaat atacaatgca ctatctttcg tgtctttaat
     1741 caatgcatca tacttaaagc ctcgatcata aaaatatttt gcaaacacag tttcatgttt
     1801 tccaattgcc ttattacgag aatccgtatc agagagcttt tcccaataat cataaaatcc
     1861 ttcataccta agcaagctat tttcaataac aacaaaatat gattgtaagt gcttaggaat
     1921 tttaccataa gggttataac cagtaaagtc tagctgctcc tcacccatgg aaattcccca
     1981 aaagtctagc tgatcggaat taaactcaga gaaaacctct tccaaatctc taaaaggacc
     2041 aatattcgta tcattaacca agatgagctg attatattgt tgtaacgcct cttttccagt
     2101 atgtattatc ccgtgtcgga aagccgcaac gtcatagccc tcattatctc tttccaaaac
     2161 cttaccaaat tgtgctaaac gatttatatc agcctgtgga agtttaccat ttacaacaat
     2221 taaaacatct cgagaaattt tagccaatgc ctctaaaaaa attactttat agtcctgtaa
     2281 agacgattga tgttcataaa ttgtgtaaat caagtaacga tttttgatat ctgaataatt
     2341 atttctacgt tgcttatcac gttgcaaagc tagtagagtt cgctttatat attttggaat
     2401 tctccagaaa aactttgcaa
//
LOCUS       DASGBY010000180         2390 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.181, whole genome shotgun sequence.
ACCESSION   DASGBY010000180 DASGBY010000000
VERSION     DASGBY010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.181"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            42..527
                     /locus_tag="U1396_001920"
     CDS             42..527
                     /locus_tag="U1396_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5343063.1"
                     /translation="MEIRFATPSDLEQVVLIENANFSKEERIAESVLATYLNTLSKTC
                     LIMEHDGEIAGYLLSCPSVSQTVTDDIFYLTESDMPTGSHLAIASLSVADSYKGQGVG
                     TLLLAAIKEVALAGGFEGVSLTCKGYLISYYEMNQFEDFGPSLSQFGGQRWSDMYWKA
                     L"
     gene            599..>2390
                     /gene="mltG"
                     /locus_tag="U1396_001921"
     CDS             599..>2390
                     /gene="mltG"
                     /locus_tag="U1396_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEM5343064.1"
                     /translation="MTKDTNEKNTQSSGFRDQILRDLEELKVKRLAEQSADVLVDKRN
                     EVINELQPSLAEEKAPHRETEIVKVEGIAFPDSYLSEEQQESEVMTESIEEPTSETLA
                     TPETFVIEKEVVSSPVPQDTVERNLEKLRNLVAANTAGFDEVPSSSSVSEPVESVLPG
                     NSPLEDTFLEFPTEDVSAVTGDTEIISLEETIIAPKTTAIVPEVDKQMQETQPRRRTT
                     HRTSKQRRKKQDNAAKHIVSVIMSIVVVAVLVTGVTGYMWVKSSLEPVDAKATETIQV
                     EIPEGTSTLEIGKILVDNKLIKNATIFNYYSKIKSYNNFQSGFYNLKQNMSVDDIAKA
                     LQESGTPTAQKEAAGKVLIVEGYTLTQIAQAITDNTNTKDKNDKTPFTAEQFMATVTN
                     QDFINRMVATYPKLFASLPAADSGVIYQLEGYLFPAVYEYSDETTIEELVEQMIAAMD
                     NRLQPYYETITAKNLTVNEVLTLASLVEKEGSTDEDRRNIASVFFNRLNAAMPLQSNI
                     AILYAQGKLGQETTLAEDAAIDTSIESPYNIYWTPGLMPGPVDSPSLSAIEAVINANT
                     TDYLYFVADVTTGNVYFTNNIDEHNQNVAKY"
BASE COUNT          781 a          421 c          517 g          671 t
ORIGIN      
        1 gcctatggcc tctgtttttc cgctatataa gggagaaaat tatggaaatt cgttttgcta
       61 ctccttcgga tttagaacaa gttgttttga ttgaaaatgc caatttttct aaagaggaac
      121 ggatagctga gtctgttctt gctacttatc tgaatacttt gagtaaaacc tgtttaataa
      181 tggaacacga tggggaaata gcaggatatt tattatcctg tccctctgtt tcgcagactg
      241 ttacagacga tattttttac ttgacagaga gtgacatgcc gacaggcagt cacctagcta
      301 ttgccagtct atccgtagcg gattcctata agggacaggg agtgggaact cttttgttgg
      361 cagccataaa agaagtggct ttagcgggag gatttgaagg agtttccctg acctgtaagg
      421 ggtatttgat tagctactat gaaatgaacc agtttgaaga ttttggcccc tccttgtcgc
      481 aatttggagg acaaaggtgg agtgatatgt actggaaagc cttgtagaaa gggaagttct
      541 tgcaattcat aagcctttaa gatataatgt atagtaactg tgtgaaagga gtaacagcgt
      601 gacaaaggat acgaatgaaa aaaacacgca gtcttcaggc ttccgcgatc aaattttacg
      661 agatttggaa gaattgaagg tgaaacgttt ggcggaacag tcagcggatg ttcttgttga
      721 taagcgtaat gaagttatca acgagctcca gcctagtctt gccgaagaaa aagcccccca
      781 tagagagact gaaattgtaa aagtagaagg tattgctttc cctgattcat acttgtcaga
      841 agaacagcaa gaatcagaag tgatgacgga aagtattgaa gagccaacat cagaaacttt
      901 ggctactcca gagacttttg tgattgaaaa agaagttgtt tcaagtccag ttccacaaga
      961 tactgttgaa cgaaacttgg agaaattaag gaatcttgtg gctgctaata cggcaggatt
     1021 tgatgaagta ccatcaagct cgtcagtttc tgagccagta gagtctgtcc ttccgggaaa
     1081 ttctccttta gaagatacat ttttagaatt tccaacggaa gacgtgtcag ctgtgactgg
     1141 tgatacagaa atcatctcac tagaggaaac tattattgct ccaaagacaa cggctattgt
     1201 tccagaagta gacaagcaga tgcaggaaac acaacccaga agaagaacaa cccacagaac
     1261 aagcaagcaa cgtcgtaaaa aacaagataa tgccgctaaa cacattgtct ctgttatcat
     1321 gtcgattgtt gtagtggcag ttctagtgac aggtgttact ggttatatgt gggtaaaatc
     1381 tagtctggaa ccagtcgatg caaaagctac agaaactatt caggtagaga ttccagaagg
     1441 aacttcaact ttagaaattg gtaaaatttt agttgacaac aagttgatta agaatgctac
     1501 tatttttaat tactactcta aaattaagag ttataataat ttccaaagtg gtttttataa
     1561 tttaaaacaa aatatgtctg tggatgacat cgccaaagca cttcaagaaa gcggaactcc
     1621 gacagctcaa aaagaagctg cagggaaggt tttgattgtt gaagggtata cattaacaca
     1681 aattgctcag gctattacag acaatactaa tacaaaagat aagaacgata aaacaccatt
     1741 tactgcagaa cagtttatgg ctactgtgac caaccaagat tttattaatc gaatggttgc
     1801 tacttatcca aaactgtttg ccagcttacc agctgctgat agtggagtta tttatcagtt
     1861 ggaaggttac ctcttcccag cggtttatga atacagcgat gaaacaacta tcgaagagct
     1921 cgttgagcaa atgattgccg cgatggataa tcgtttacaa ccatattatg aaacgattac
     1981 tgctaagaat ttgactgtaa atgaagttct taccttggca tctttggttg aaaaagaagg
     2041 ttctactgat gaagatcgtc gaaacattgc aagtgtcttc tttaaccgct tgaatgcagc
     2101 aatgcctcta caatctaata ttgcaatctt gtatgctcag ggtaaacttg gtcaagaaac
     2161 aactctagca gaagatgcag cgattgatac atcaattgag tcaccataca acatttattg
     2221 gacaccagga ttgatgcctg gaccagtgga tagtccaagc ctttcggcta tcgaggcagt
     2281 gattaatgcc aacacaacag actatcttta ctttgtagca gatgttacaa ctggaaatgt
     2341 ttactttaca aataatattg atgaacataa ccaaaacgtt gctaagtatg
//
LOCUS       DASGBY010000181         2363 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.182, whole genome shotgun sequence.
ACCESSION   DASGBY010000181 DASGBY010000000
VERSION     DASGBY010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.182"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..981)
                     /locus_tag="U1396_001922"
     CDS             complement(<1..981)
                     /locus_tag="U1396_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343065.1"
                     /translation="MKWLITHHVLNNIPIHVGQFTQIVGQNYELKYYIWQILIWYFGG
                     KKYSEEDLILFNQEEPVISQDSEAIKRNAFKIISIAEVGDILEQISYKKGTIGFSYLS
                     LKMQNIEIIEELEILNYHLHKIAQKVNSSISLINDEIEYEVGTTDLLPEQILTKQLTP
                     HFKKSRDEIAIEFISNEKKLCFLLQMLNAIMQEQTKPILLVLKNLDDYLTYDSFVRIA
                     QYLEELSNKYPYFNTILFPSQEGYLYLTEATLETVNIVSDRIEHYPAFTFLYTRYQQS
                     YPSTSPLGEKEFLNSLRKISSYLFSSDINRVVSLADIDLVTLKIVNSLYQY"
     gene            complement(978..1301)
                     /gene="cas2"
                     /locus_tag="U1396_001923"
     CDS             complement(978..1301)
                     /gene="cas2"
                     /locus_tag="U1396_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001268300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEM5343066.1"
                     /translation="MRYDAMRLLCFFDLPMETTQEKRQYRLFRKELIANGFEMLQFSV
                     YYRTCPNRSFATKFYKKLQQSHLPAGNVRLLAVTEKQFFEMVLIVGGKTRQEEAISDR
                     KLVII"
     gene            complement(1298..2212)
                     /gene="cas1"
                     /locus_tag="U1396_001924"
     CDS             complement(1298..2212)
                     /gene="cas1"
                     /locus_tag="U1396_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEM5343067.1"
                     /translation="MTWRIVHIHQSEKMRLKLDNLVIKKQGDEFTIPLSDISIIVAEG
                     GDTVVTLRLLSALSKYNIALIVCDNHHLPTGIYHSQNGHFRAYKKLQAQLSWAPLQKD
                     KLWQIIIYFKITNQQDVLAMQEKSLSTIQLLSDYREHIELGDRTNREGHAAKVYFNEL
                     FGKQFVRLTQQETDAVNAGLNYGYTIFRAQMARIIAGYGLNALIGIFHKNEYNQFNLA
                     DDLMEPFRQIVDVWVYMNLREADFLTYQHRLELTNLLNAKIRYGKENCSVTVAMDKFV
                     KGFIRCIEDKDTNQFFCPVVSSLEMEKL"
BASE COUNT          733 a          462 c          355 g          813 t
ORIGIN      
        1 atactgataa agtgaattaa ctatctttag agttactagg tctatgtctg ctaagctcac
       61 gactctatta atgtctgaag agaataaata ggaactgatt tttctcaaag agtttaaaaa
      121 ttctttttca cctagtgggc tagttgaggg atatgactgc tgataacgag tatagagaaa
      181 cgtgaaagca gggtagtgtt caattctatc agacacaata ttaacagtct caagcgttgc
      241 ctcggtcaag tacaaatagc cctcttgaga aggaaacaag attgtgttga aatagggata
      301 cttattacta agttcctcta aatactgtgc tattctcaca aaagaatcgt aagttaggta
      361 atcatctaaa tttttaagta ccagtaaaat tggttttgtt tgttcttgca ttattgcatt
      421 caacatttgc aatagaaaac acaatttctt ttcatttgaa ataaattcaa tagcgatctc
      481 atctcttgac tttttgaaat gcggagtaag ttgctttgtt aaaatttgct ctggaagtaa
      541 atcggtcgtt ccaacctcat actcgatttc atcatttatc aacgaaatgc ttgaatttac
      601 tttttgagca atcttatgta aatgataatt taatatttca agctcttcaa taatctctat
      661 gttctgcatt tttaatgaca aatatgaaaa tccaatcgtt ccctttttat agctaatctg
      721 ctctaggata tctccaacct ctgctattga aatgatttta aaagcatttc tttttatcgc
      781 ttcactgtcc tgtgaaatca caggctcctc ttgattaaaa agtattaaat cttcctcact
      841 gtactttttt ccaccaaaat accatatcaa tatttgccaa atataatatt ttaattcgta
      901 gttttgaccg acaatttgag taaattgacc aacatgaatt ggaatattat ttaatacatg
      961 gtgtgttatt agccacttca tatgattacc aacttcctat cacttatcgc ttcttcctgt
     1021 cttgtcttac cacctacaat taggaccatc tcaaaaaatt gtttctccgt caccgctaat
     1081 aatctcacat taccagctgg tagatgactt tgttgtaact ttttataaaa cttcgttgca
     1141 aaactccgat tcggacacgt acgataatag acagaaaact gtaacatttc aaagccatta
     1201 gcaatcaact cttttcgaaa caagcgatac tgacgtttct cttgagtcgt ttccattggc
     1261 aagtcaaaaa agcataacag gcgcatagca tcatacctca taatttctcc atttctagac
     1321 ttgaaactac tggacagaaa aattgatttg tgtctttatc ttcgatacaa cgaataaacc
     1381 ctttgacaaa cttatccatt gcgacggtga cactgcaatt ttcttttcca tatctaatct
     1441 tggcattcaa tagatttgtt aattccaaac gatgttggta tgttaaaaag tcagcttccc
     1501 tcaaattcat atagacccat acatcaacaa tttgtcgaaa cggctccatt aaatcatctg
     1561 ctaaattgaa ttggttgtat tcatttttat gaaaaattcc tattaaagcg tttaaaccat
     1621 atcctgctat aattcgtgcc atttgagctc taaaaattgt gtagccataa ttcaaccccg
     1681 cattcactgc atcagtctct tgttgtgtta gtcgaacaaa ctgtttgcca aacagctcat
     1741 tgaaatacac cttagcggca tgcccctccc tattcgtcct atccccaagt tcgatatgtt
     1801 ccctataatc agataataac tgaatggtag acaaagattt ttcctgcatt gccaaaacat
     1861 cttgctggtt cgtaatttta aaatatatga taatttgcca taatttatcc ttttgtagcg
     1921 gcgcccatga tagctgagct tgcaactttt tataagctct aaaatgtcca ttttgagagt
     1981 gataaatacc tgtaggtaag tggtggttat cacagactat taaagcaata ttgtacttac
     2041 taagtgcact taataggcga agagtaacaa ctgtatcccc tccttctgca acaattatag
     2101 aaatatcact taatggaatc gtaaactcat ccccttgttt ctttatgact aagttgtcga
     2161 gctttaatcg cattttttca ctttgatgaa tatgtacaat tctccaagtc atggtgttct
     2221 cctgtttaca acgaaaagca ccccgtacga aacggggtgc ttgatttcgg cataaagcct
     2281 tatctttgta ggctctgcaa gatttaagta acagtgtaag gcttccctta cagttaaagt
     2341 ttacactttt tacttaaaaa ata
//
LOCUS       DASGBY010000182         2361 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.183, whole genome shotgun sequence.
ACCESSION   DASGBY010000182 DASGBY010000000
VERSION     DASGBY010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.183"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(8..1291)
                     /locus_tag="U1396_001925"
     CDS             complement(8..1291)
                     /locus_tag="U1396_001925"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEM5343068.1"
                     /translation="MKLQKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIF
                     EHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLRPEGTAPVVRSYVENKLFAPEVQK
                     PAKFYYMGPMFRYERPQAGRLRQFHQIGVECFGSNNPATDVETIAMAYHFFEELGIKD
                     IRLHLNSLGNPESRAAYRQALIDYLTPLKDQLSKDSQRRLEENPLRVLDSKEKEDKIA
                     VENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVIDTNMVRGLDYYNHTIFEFMTEVG
                     GNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLILVLEKQGIELPLDTQLDIYIA
                     VLGQEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIES
                     GQVVVKNNQTRSQVETSLEALKTDFASILEELEKQ"
     gene            complement(1557..2258)
                     /locus_tag="U1396_001926"
     CDS             complement(1557..2258)
                     /locus_tag="U1396_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343069.1"
                     /translation="MKTVGKFFAKKLASLMVLLLVLGLGIIWFRNSIFAWFQGIHKVQ
                     YEFVIKKFEAESKLVVAGAEVATTANQTFENNKLEEWPDWTEPITKLFVGREMSVDIP
                     VQTEFKLVLEGIEQSDVHIQNNTLTFKQPVLVEVDSQQHGQIKISNNSNGLLDKAVDA
                     FTSGQKAQEFLNEKSQEAIYKTSEEVLNDAERQEKVAAFAETALENLLNLNSEEKLEV
                     EIEVSDLNFQIVDKK"
BASE COUNT          620 a          564 c          480 g          697 t
ORIGIN      
        1 ctttagacta ctgcttctcc aattcttcta aaatacttgc aaaatctgtt ttaagtgctt
       61 ccaagcttgt ttcaacttga cttcttgtct ggttattttt gaccacaacc tgtccagatt
      121 caatttcgct accacccagg gtaatgatag ccttggctcc aaagacatct gctgacttaa
      181 actgagcctt gagcttgcgg tccagatagt cacgttctgc acgaaaacct tgcttgcgaa
      241 tggcttgaac aagatcaagc gctccgccat tggcctcctg acccaaaacc gcgatgtaaa
      301 tatctaactg ggtgtcgaga gggagctcga tgccttgctt ttcaaggact aggatgaggc
      361 gctcaatgcc catgccaaag ccaaaagctg gcgtttctgg tccaccaaag taggtcacca
      421 agccatcata acggccaccg gcacagatgg tcaggtcatt gccacctacc tcggtcataa
      481 actcgaaaat agtatggtta tagtagtcca aaccacgcac catgttggtg tcaatcacat
      541 aagcaatgcc taagctgtcc aacatagtct taaccgcttc aaagtgagca gtactttctt
      601 catctagata gtccaagatg gacggtgcat tttccacagc gatcttgtct tctttttcct
      661 tagaatccaa cacacgcaaa ggattttctt ccaagcggcg ctggctatcc ttggaaagct
      721 ggtccttgag tggcgtcagg tagtcaatca aggcctggcg ataagcggca cggctctctg
      781 gattgcccag actgttgagg tggaggcgaa tgtccttgat ccccagctcc tcaaagaagt
      841 ggtaggccat agcaatggtt tctacgtctg tcgctgggtt attagaacca aaacactcca
      901 caccaatctg atggaactgg cgtagacgac cagcctgcgg acgctcatag cggaacattg
      961 gacccatgta atagaactta gcaggttttt gtacttctgg agcaaacagc ttgttctcta
     1021 cataggagcg aacaaccggt gccgtccctt ctggacggag ggtgatatga cgctctccct
     1081 tgtcatagaa atcgtacatc tccttggtca caatgtccgt cgtatcgcca accgaacggc
     1141 tgatcacctc gtaatgctca aagattggtg tgcgaatctc agcgtaattg tactgtttga
     1201 aaatgctgcg ggtaaagttt tccacgtact gccatttggc agaatcctgc ggtagtaaat
     1261 cctgtgttcc ctttggtttt tgtaatttca tggactttct catttctcta aatattgccc
     1321 tttattttat catattttgg tcttttttgg aaatggcaga gcagacaaaa agggagtggg
     1381 aaagaactcg accagtctaa aaagagttcg tcttcccacc ccccgcacag ttgattaggt
     1441 cagatttgga gtgtgaaaca cgaacaaatc tgccaatcaa ccactgcgct gagatgttga
     1501 cacgaactct gagaagcgag gatggacttt ctgcccagcc tccttgttta aaaaaactat
     1561 ttcttatcca caatctggaa attcaagtcg ctcacttcta tctcaacctc aagtttttct
     1621 tcggagttca gattgaggag gttttctaaa gccgtttctg caaaagcagc gactttttcc
     1681 tgacgttctg catcattcaa gacttcctca cttgtcttgt aaatggcttc ttgggatttt
     1741 tcatttagaa attcctgagc cttttgtcca gaggtgaaag catctactgc cttatctaaa
     1801 agaccattgc tattattgct aattttgatt tgaccatgct gttgagaatc aacttcgaca
     1861 aggacaggtt gcttgaatgt caaggtgttg ttttgaatgt gaacatctga ctgctcaatt
     1921 ccttccaaga ccagtttgaa ctccgtctgg acaggaatat ctacagacat ttcccgtcca
     1981 acaaagagct tggtaatagg ctctgtccag tctggccatt cttctaattt attgttttca
     2041 aaggtctggt tggcagtggt tgctacctca gctcctgcca caaccagttt actttccgct
     2101 tcaaacttct tgataacaaa ttcatactga accttgtgga taccttggaa ccaagcaaaa
     2161 atactatttc taaaccagat aatgcctaga cctaaaacca gtagcaagac cataaggcta
     2221 gccaactttt tcgcgaaaaa ctttccaact gtcttcatac agttctcctt catatttgaa
     2281 ttatcggaac ttgtcctaca accattatat atatatatgc tgtcaagtat ttttggcatt
     2341 tttttgaaca ttttagaaaa c
//
LOCUS       DASGBY010000183         2352 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.184, whole genome shotgun sequence.
ACCESSION   DASGBY010000183 DASGBY010000000
VERSION     DASGBY010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.184"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(47..2065)
                     /gene="recG"
                     /locus_tag="U1396_001927"
     CDS             complement(47..2065)
                     /gene="recG"
                     /locus_tag="U1396_001927"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEM5343070.1"
                     /translation="MKRLCDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDF
                     ESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLA
                     DKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
                     DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQL
                     QLQMLKANNRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMN
                     RLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLFPELSIALL
                     TGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRL
                     FREKGDNPDVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTV
                     LDWLERELEVGAQVYFISPLIEESEALDLKNAVDLQSDLQAHFGEQVTVDLLHGKMKN
                     DEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGR
                     GHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEF
                     QVANIIEDYPILEEARRVASQIVSVENWQEDPNWSILLANLKDREELD"
     gene            complement(2184..2255)
                     /locus_tag="U1396_001928"
     tRNA            complement(2184..2255)
                     /locus_tag="U1396_001928"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2220..2222),aa:Glu,seq:ttc)
     gene            complement(2278..2350)
                     /locus_tag="U1396_001929"
     tRNA            complement(2278..2350)
                     /locus_tag="U1396_001929"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2315..2317),aa:Asn,seq:gtt)
BASE COUNT          744 a          607 c          362 g          639 t
ORIGIN      
        1 aatatgtcaa aagaccaaca caggtgtgtt ggcctttttt atatgactag tccaattcct
       61 ctcgatcttt caaattagca agcaaaatcg accaattagg gtcctcctgc caattttcca
      121 cgctaacaat ctgactagca actcgtcttg cttcctctaa aattggatag tcctcgataa
      181 tatttgcaac ctgaaattct ggcaaacctg attgacgagt cccaaatatt tctccagacc
      241 cacgcatttt taagtctgct tcagccaaaa taaaaccatc tgtcgtctct gtcataattt
      301 tcatgcgttc cttaccagac tctgttttag gattagcaac taacactgca taagactgct
      361 tatgaccacg tcctacacgc cctctcaact gatgtaattg gcttaaacca aaacgatctg
      421 catccataat aaccatcacc gttgcattgg gcacattgac tccgacttca ataacagtgg
      481 tagaaaccaa aatattcgtt tttcgctcct taaaagcctg catgatggca tctttctcgt
      541 cattcttcat cttaccgtgt aacaaatcca ctgtaacttg ctctccaaaa tgcgcctgta
      601 aatcagattg cagatctaca gcattcttta aatctagagc ctcagattct tcaattagcg
      661 gagagataaa ataaacctga gcacccactt ctaactcccg ctccaaccaa tctaagaccg
      721 tgggcagctg ttgatgtttg acccagcgag tgataattgg cttccgacca gcaggtaact
      781 gattaataat cgatacatcc atatctccaa aagctgtaat ggctaatgtc cgaggaatag
      841 gtgtagcagt catcataagc acatccggat tatcaccctt ctcacgaaac agacggcgct
      901 gtttaacacc aaaacgatgt tgctcatccg tcacaaccaa accaagctta tggtacgtca
      961 cactttcctg tataagagca tgagttccta caatgatgtc tacctgacca ctagaaatcg
     1021 cctctaaagc agtacgacgc tccgcagcct tcattccacc tgtcaaaaga gcaatagaaa
     1081 gttctggaaa aagctggcgc aaactctcaa agtgttgctc agccaaaatt tctgtcggca
     1141 ccataattgc agcctgcatc cccgcagtca cagcagcaaa catagccaat ccagcaacta
     1201 ctgtcttccc tgaaccaaca tccccttgta acaaacgatt catgtgccca taggacttca
     1261 tatctgatag tatttcagcc aaagccccag actgagcatc tgttaagaca aacggcaatt
     1321 gtcttatttg catagccaat ctatcagcat cataggcaat cttcaaacca ttcgaaatat
     1381 cacgattgtt ggctttcagc atttgcaact gtaattgaaa ataaaataat tcctcaaact
     1441 tcatacgtcg caaagcttgt ctatactctt ctaaatttgt aggaaaatgc atcgcaaaaa
     1501 ccgcctctcg gcgattcatt aaccgatagc gctctcgtaa aactgatggc aagttctcct
     1561 ctaataaatg caaatatccc tgatcaatag ctgttttaat agccttaacc aaatttactt
     1621 gcgaaatccc ttgcgccaca tgatagacag gttggagctc atctgatact tgagccaaaa
     1681 ttttcattcc tgtcaaactt gccttagcct tatcccactt tccccaaact gcaatatcct
     1741 gccccaaaac aatcttatct gctaaataag gctgattaaa aaacgaaact gctaagacaa
     1801 cctcaccctg tttcattgaa aaacggagtc tatttctttt gtaaccataa tactgtacat
     1861 tagctggaga taccacctcc ccaactacca ctgccttctc cccatcctgc aaatcataaa
     1921 tagacttact ctcaaaatct tcatatctaa atggatagta agtcagcaaa tcattaatat
     1981 tctgaatatt aatttttaag aatttttcag ccgattttgg accaatccct ggcaaaaccg
     2041 ataattcatc acataatctt ttcatgtctc tattatatca acaaacaatg aatagacaaa
     2101 gtaacaagaa aagaaaaaag agccaaatta aagcccatac acctcaaaaa acaaaaaaaa
     2161 gagacctaag cagcctccaa atatagtccg tacgggattc gaacccgtgt taccgccgtg
     2221 aaaaggcggt gtcttaaccc cttgaccaac ggaccatata ctaaagattt ctctttactc
     2281 cgccaacagg gctcgaacct gtgacatcat gattaacagt catgcgctct accaactgag
     2341 ctatggcgga at
//
LOCUS       DASGBY010000184         2269 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.185, whole genome shotgun sequence.
ACCESSION   DASGBY010000184 DASGBY010000000
VERSION     DASGBY010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.185"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            6..764
                     /locus_tag="U1396_001930"
     CDS             6..764
                     /locus_tag="U1396_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5343071.1"
                     /translation="MPLLDVQHVQKIYSSRFKAGQVEALKDIHFTVEKGEYVAIMGES
                     GSGKSTLLNILATLDKPTQGKVLLNGLDTQSIKSKEAAVFRREKLGFVFQDFNLLDTL
                     SVKDNVLLPLVLSRYPTDEMNKRLVHTLNSLGIATLQDKMPYEISGGQQQRVAVARAI
                     ITQPEILLADEPTGALDSKSTATLLDIFEKINQEGQTILMVTHSTVAASRAKRVLFIK
                     DGILYNQIYRGERTSQEMYQLISDTLTLMANRGE"
     gene            766..>2269
                     /locus_tag="U1396_001931"
     CDS             766..>2269
                     /locus_tag="U1396_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5343072.1"
                     /translation="MFGLTVRLALTNLKKNRRLYFPYALMTILSTAIAYIFASLAFHP
                     DLGQVKGADGVTMVLGFGMIVVMLAVAIMVFYANSFVMKQRSKEFGVYSILGLEKKHL
                     LLMTFLENLVFAASSILTGLLLGLALDKLFYALLLKVMQMPVVLASTFQLKSLVTVVI
                     YLFGIFALVSLFNIGKLGLTDSLKLVQGKKRGDKKTGFLWLQTLLALILLGAGYAIAQ
                     LVTSPMQAIPSFFGATLLVILGTYLLFHAGVISLLNWLKNRQTYYYKPDNFISVSNLI
                     FRMRKNALGLATITILSSMFLVTMVGGLNIYIGGKDYIANQNPNDYSIDVGMQPTTSK
                     AQMEKWEEWAEAILEETDIPVESKVVYPYQQAYFSEVTNQQVRFFTDEEAAGMNFSDR
                     VGIGFVLDQASYEKMTGEKLQLASDQVAIFSKGVQYQAGQTLTFDEKEMEVVQVLPKN
                     VTLGHLPDHGSFLLSQYLVIVVQDLAVFENQAENRYYMGFESSLSEEEQVD"
BASE COUNT          590 a          486 c          534 g          659 t
ORIGIN      
        1 cagtgatgcc actcttagat gtacaacatg ttcaaaaaat atatagttct cgctttaagg
       61 cgggtcaggt tgaggccttg aaggatattc attttacagt tgaaaagggt gaatatgtcg
      121 ccattatggg tgagtcgggt tctggtaagt ccaccttgct caatattttg gcaacccttg
      181 ataagccaac gcagggcaag gtcttgctta acggattgga tacccagtct atcaagagca
      241 aggaagcggc agtctttcgt cgggagaaat tgggctttgt cttccaagat ttcaatctct
      301 tggacaccct ctcagtcaag gataatgtgc tcttgcctct ggttttatct cgctatccga
      361 ctgatgagat gaacaaacga ctcgttcata cgcttaatag cctgggaatt gcgaccttgc
      421 aagacaagat gccctatgag atttcgggtg gtcagcagca gcgagttgcg gtggcgcgtg
      481 ccatcattac ccagccagaa attctcttag cggatgagcc gactggggcc ctcgactcca
      541 aatcaacggc aactcttcta gatatttttg aaaaaatcaa ccaagagggg caaaccattt
      601 tgatggtaac ccactcgaca gtagcagcta gtcgtgccaa acgggttctc ttcatcaagg
      661 acggcatcct ctacaatcaa atctaccgag gtgagagaac cagtcaggaa atgtatcagt
      721 tgatttccga taccttgaca cttatggcga atcgaggtga gtagtatgtt tggactaacc
      781 gttcgattgg ctctgaccaa tctcaaaaag aaccgcagac tctattttcc ctatgccctg
      841 atgaccattt tgtccacagc cattgcctat atttttgcct cgcttgcctt tcatcctgat
      901 ttaggtcagg tcaagggagc cgatggggta accatggtat tgggctttgg tatgattgtg
      961 gtcatgttgg cggttgccat catggtcttc tatgccaata gttttgtcat gaagcagcgg
     1021 tcaaaagagt ttggtgtcta tagtattcta ggattggaga aaaaacacct cctcctgatg
     1081 acttttctag aaaatctagt ttttgcagcc agtagtattt tgacaggatt gttgctgggc
     1141 ttggctctag ataaactctt ctatgccctc ttgctcaagg tcatgcagat gcctgtggtc
     1201 ttggcttcaa ctttccagtt gaaaagtctg gtaactgtag tcatctatct ctttgggatt
     1261 tttgccttgg tcagcctttt taatattggg aagttgggct tgaccgactc actcaaactg
     1321 gttcaaggta agaagagagg ggacaagaaa acgggcttcc tctggctaca aaccctctta
     1381 gctcttatct tattgggggc aggctacgcc attgcccagc tggtgaccag tccgatgcag
     1441 gctattccaa gtttcttcgg agcgactctt ctggttatcc ttgggaccta cctgctcttc
     1501 catgcaggtg ttatcagtct cttaaactgg ctaaagaacc gtcagaccta ttattataag
     1561 ccagataatt tcatttctgt atccaacttg attttccgca tgcggaaaaa tgctctaggg
     1621 cttgcgacca ttaccatcct ctccagtatg ttcttggtga ccatggttgg aggactcaat
     1681 atttacatcg gtggcaaaga ttatattgcc aatcaaaatc caaatgacta ttcgattgat
     1741 gttggtatgc agcccaccac ttcaaaagct caaatggaga agtgggagga gtgggcggaa
     1801 gctatcttag aagagacaga tattcctgtt gaaagtaagg tggtctatcc ttatcagcaa
     1861 gcctattttt ctgaggtgac aaatcagcaa gtaagatttt ttacggatga agaagccgct
     1921 ggtatgaatt tctctgaccg agttgggatc ggttttgtcc ttgatcaagc cagctatgaa
     1981 aagatgacgg gagaaaaact ccagttggca tctgaccaag tggcaatttt tagcaaagga
     2041 gtccagtatc aagctggtca aaccctcacc tttgatgaaa aggagatgga agttgtccaa
     2101 gtcttgccca agaatgtgac tttaggacat ctaccagacc atggttcctt ccttctcagc
     2161 cagtatctgg tcattgttgt tcaagacttg gctgtttttg aaaatcaagc cgaaaatcgc
     2221 tattatatgg gatttgaaag cagtctatca gaagaagagc aggtagata
//
LOCUS       DASGBY010000185         2261 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.186, whole genome shotgun sequence.
ACCESSION   DASGBY010000185 DASGBY010000000
VERSION     DASGBY010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.186"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            152..237
                     /locus_tag="U1396_001932"
     tRNA            152..237
                     /locus_tag="U1396_001932"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:186..188,aa:Leu,seq:aag)
     gene            472..1353
                     /locus_tag="U1396_001933"
     CDS             472..1353
                     /locus_tag="U1396_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HEM5343073.1"
                     /translation="MPLVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKQAP
                     VLIQTSMGAAKYMGGYKVARNLIANLIESMNITVPVAIHLDHGHYEDALECIEVGYTS
                     IMFDGSHLPVEENLAKAKEVVELAHAKGISVEAEVGTIGGEEDGIVGAGELAPIEDAV
                     AMVATGIDFLAAGIGNIHGPYPANWEGLDLDHLRKLTEAVPGFPIVLHGGSGIPDAQI
                     QEAIKLGVAKVNVNTECQIAFANATRKFAAAYEANEAEYDKKKLFDPRKFLADGVKAI
                     QASVEERIDVFGSANKA"
     gene            1748..1936
                     /locus_tag="U1396_001934"
     CDS             1748..1936
                     /locus_tag="U1396_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008536053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEM5343074.1"
                     /translation="MAKVCYFTGRKTVSGNNRSHAMNQTKRAVKPNLQKVTVLIDGKP
                     KKVWASARALKSGKVERV"
BASE COUNT          788 a          382 c          479 g          612 t
ORIGIN      
        1 aagcattata ttttaagcat tatatagtag aatattgcaa aagaatcagc taaatcaata
       61 cgttttggca aaaaaggtaa aaataaaaaa taaaattcaa aaaaagtgtt gacaaggcta
      121 gttcctaatg atatactagt tcttgtgtta agcggggatg gcggaattgg cagacgcgca
      181 ggactaagga tcctgtgacc gctttaggtc gtgtgggttc aagtcccact ctccgcatag
      241 tggactagct aaggctagtc cttttgcttt gtctagataa gtgcagagca cgatatatgc
      301 tagttcataa attacaagaa tgatacgaaa caggcattat tatggctttc atgaaaagat
      361 atgtgaaagt tttctcaaaa ctagacggtt tcaactagca ttttcaaaat aaaaatggta
      421 gaatagaaga gtatgaggtg caacctcaaa aaatattagg aggctatcga aatgccatta
      481 gtttcagcag aaaaatttgt ccaagcagcg cgtgacaacg gttatgcagt tggtggattt
      541 aacacaaaca accttgagtg gactcaagct atcttgcgtg cagcagaagc aaaacaagct
      601 ccagttctta tccaaacttc tatgggtgca gctaagtaca tgggtggtta caaagtagct
      661 cgtaacttga ttgcaaactt gattgaatca atgaacatta cagttccagt tgctattcac
      721 cttgaccacg gtcactacga agatgcactt gagtgtatcg aagttggtta cacttctatc
      781 atgtttgacg gttcacacct tccagtagaa gaaaaccttg caaaagcaaa agaagttgta
      841 gaattggcgc acgctaaagg tatctcagtt gaagctgaag ttggtactat cggtggtgaa
      901 gaagatggta tcgtaggtgc tggtgaattg gctccaattg aagacgcagt agcaatggtt
      961 gcaactggta ttgacttctt ggcagcaggt atcggtaaca tccacggtcc atacccagca
     1021 aactgggaag gtcttgacct tgaccacttg cgtaaattga ctgaagctgt accaggtttc
     1081 ccaatcgtat tgcacggtgg ttcaggtatt ccagatgcac aaatccaaga agcaatcaaa
     1141 ttgggtgttg ctaaagttaa cgtaaacacc gagtgccaaa tcgcatttgc aaacgcaact
     1201 cgtaagtttg cagcagctta tgaagcaaac gaagcagaat acgataagaa aaaactcttt
     1261 gacccacgta aattcttggc agacggcgtg aaagctatcc aagcatctgt tgaagagcgt
     1321 atcgacgtat tcggttcagc gaacaaagct taatgtaact gcgaagaaat ctcagatttc
     1381 aagcaaacaa agcataagtt tcttagatta aaccaaaaag gattttcttt cgagaatcct
     1441 ttttattata aatagttgat taagtttgat ctagttcttt gccatgaaga aatctacgat
     1501 agaagtgagc agagaacagt taaaatataa aacgctccaa agttttcatg actgtaataa
     1561 cttagagaac gaagaattat ggatggggcg caaactgtag tattaaaata tttacctatg
     1621 aatatagatg ctttaaaaaa ataaaaatga aaataattct tgccaagtcc aatcttttct
     1681 gttagaatag tatggtatgt ggtgctagca catccgatat atttgatcaa atgaggagga
     1741 agatacaatg gctaaagtat gttatttcac tggtcgtaag actgtatcag gtaacaaccg
     1801 ttcacacgct atgaaccaaa ctaaacgcgc agttaaacca aaccttcaaa aagtaactgt
     1861 tttgattgat ggtaaaccta aaaaagtttg ggcttcagca cgtgcactaa aatcaggcaa
     1921 agttgaacgc gtataataac aaagtcgtta gaaaaatcta gcgacttttg tttttggaaa
     1981 aaatagccta gatataaagt cggtgaggag caaattcggc cactacataa taaacatgaa
     2041 agaatatcag ctatatagct cttcacattg ctgttgaaaa gttaacaaag aaggatcgtt
     2101 gtcaaaaata aactgtgtat tgatgtggaa gatttttcca agttcgaaca tttaaacttg
     2161 gattgacatt aggagttgta cgagagagca tccgtacggg ttctacaaga aaggaatcac
     2221 gaactggaag aatagagagt gtttaaaaaa atccaaaaaa t
//
LOCUS       DASGBY010000186         2196 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.187, whole genome shotgun sequence.
ACCESSION   DASGBY010000186 DASGBY010000000
VERSION     DASGBY010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.187"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            49..1362
                     /locus_tag="U1396_001935"
     CDS             49..1362
                     /locus_tag="U1396_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM5343075.1"
                     /translation="MIEKVFRDPVHNYVHVDHELIYKLINTKEFQRLRRIKQLGTTSY
                     TFHGGEHSRFSHCLGAYEIARRITQKFEDKYPQIWDTNESLLTMVAALLHDVGHGAYS
                     HTFERLFDTDHEEMTCAIITSPETEINALLKQVSPEFPDKVASVIKHTYPNKQVVQLI
                     SSQIDVDRMDYLLRDSYFTGANYGEFDLTRILRVIRPTENGIAFKESGMHAVEDYVLS
                     RYQMYMQVYFHPASRSMEVLLQNLLNRAKLLYTSEQEFFARTSPRLLPFFEHRIRLTD
                     YLSLDDGVMNTYFQSWIDGPDRILSDLAQRYINRKVLKSITFKAEEEEALDRLRSLVA
                     DVGFDPEYYTAIHHNFDLPYDIYRPNAEKKRTQIEIYRKDETLVELSSLSPIVHSLSG
                     TIHGDSRFYFPKEMLEETGIFAPQIADFNSHIHNDHFIIGESNEH"
     gene            1352..2161
                     /gene="yidA"
                     /locus_tag="U1396_001936"
     CDS             1352..2161
                     /gene="yidA"
                     /locus_tag="U1396_001936"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM5343076.1"
                     /translation="MSIKLVAIDIDGTLLNSQHQITAEVHSAIQESKKAGVKIVIATG
                     RPISGVQAILEELNLTEAGDYVITFNGGLVQDAATGEDIVKDTLTYEDYLDIESAARK
                     LKLPMHASTKEGIYTANRNIGKYTIYESTLVSAPIFYRTPEEMADKEIIKTMMVDEPE
                     ILDAAIPLLPTSLTEKYNVAKSAPFYLEITPKTVNKGQAIIHLAEKLGLTMDQTMAIG
                     DQENDRPMLEVVGNPVVMENGNPELKKIAKYITKSNDESGVAHALREWVLK"
BASE COUNT          702 a          490 c          415 g          589 t
ORIGIN      
        1 ttttagaaaa atcaggaatt tatctccctt ttttgttata atgaaactat gatagaaaaa
       61 gtatttcgcg atccagttca taactatgta catgttgatc atgagctgat ttataaactt
      121 atcaatacaa aagaatttca gcgactacgc cgcatcaagc aactagggac tacttcctat
      181 accttccatg gtggcgagca tagccgcttt tcgcactgcc tcggcgccta cgaaatcgcc
      241 agacggatta ctcaaaaatt tgaagacaag tatccacaaa tctgggatac aaatgagtcc
      301 ctactgacca tggttgctgc gctactccat gatgtcggac acggagccta ttctcatacc
      361 ttcgagcgtc tatttgatac agaccatgag gaaatgacct gtgcaattat tactagtcca
      421 gaaacggaaa tcaatgctct gttgaaacaa gtttcacctg agtttccaga caaggttgct
      481 agtgttatca aacacaccta tccaaataaa caggtcgttc aactcatttc gagccagatt
      541 gatgttgacc ggatggatta tctattacga gattcctact tcacaggtgc gaactatggt
      601 gaatttgacc taactaggat attacgtgtc attcgcccga cagaaaatgg aattgccttc
      661 aaagaatctg gtatgcatgc agtagaagac tacgttctca gccgctacca gatgtacatg
      721 caagtctatt ttcatccagc aagccgctct atggaagtcc tattgcagaa tttactcaat
      781 cgtgccaaac tactatatac tagtgaacag gagttttttg cacgaacttc acctcggcta
      841 ttaccttttt ttgagcatcg tatccgtcta accgactacc tcagtcttga tgatggagtt
      901 atgaatactt actttcaatc atggatagat ggaccagatc gtatattatc tgacttagcc
      961 cagcgctata tcaataggaa agtgctcaaa tccatcactt tcaaggccga agaagaggaa
     1021 gctttggacc gcctgcgtag cctggtcgca gacgtcgggt ttgacccaga atactatact
     1081 gctattcacc acaactttga tttgccgtat gacatttacc gaccgaatgc agaaaagaaa
     1141 cggactcaaa ttgagattta tcgcaaagat gaaaccttgg tagaactatc ctctctgtca
     1201 ccaattgtcc attccttatc aggcacaatc catggcgata gccgcttcta tttcccaaaa
     1261 gaaatgttag aagaaacagg aattttcgca cctcaaatag ctgattttaa cagccacata
     1321 cataacgatc attttataat tggagaatca aatgagcatt aaacttgtcg ccatcgatat
     1381 tgatggtaca ctactaaata gtcaacacca aattacagct gaagtacact cagcaatcca
     1441 agaatcaaaa aaagcaggcg ttaaaattgt tattgctact ggtcgcccca tttccggtgt
     1501 tcaagcaatt ttagaagaac tcaatcttac agaagcaggt gactacgtca tcacttttaa
     1561 cggtggctta gtccaagatg cagcaactgg tgaggatatt gtcaaagata ccttgactta
     1621 tgaggactat ctcgacatcg aatctgctgc ccgtaaactc aagctcccaa tgcatgccag
     1681 caccaaggaa ggcatctata ctgctaaccg taacatcggt aaatacacca tttacgaatc
     1741 aacactagta agtgcaccca ttttctatcg cactcctgaa gaaatggctg acaaggaaat
     1801 catcaaaaca atgatggttg atgagccaga aattcttgat gctgctattc cacttctacc
     1861 gaccagcttg actgagaagt acaacgtagc aaaatcagca ccattttatt tggaaatcac
     1921 ccctaaaact gttaacaagg gacaagctat cattcatcta gctgagaagc ttggactaac
     1981 tatggatcaa actatggcca tcggtgacca agaaaatgac cgtccaatgt tggaagttgt
     2041 tggtaatcct gttgtcatgg aaaacggaaa tcctgaattg aagaaaatcg ccaaatacat
     2101 tacgaagtca aatgatgaga gcggtgtagc ccacgctctt agagaatggg tactgaaata
     2161 gcctcttaaa atatcaaaaa aagcatcgaa ttcaaa
//
LOCUS       DASGBY010000187         2155 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.188, whole genome shotgun sequence.
ACCESSION   DASGBY010000187 DASGBY010000000
VERSION     DASGBY010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.188"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..531
                     /locus_tag="U1396_001937"
     CDS             <1..531
                     /locus_tag="U1396_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HEM5343077.1"
                     /translation="LLVSYLFLHNRGGVVHFVKVMINSLFINNRNDHLNGILTVGIFG
                     YFGWFVTQLPLWLIFIDIFIFTLLLFNDGNLKISKTEGLVSLFVLPVQVAIIVAGMYF
                     AWTPTAIGPNAMISQGAQGRYFTPFLVYLFPACLMLKEQVSVSVKQKYLIRWITGTVV
                     INFIMYLFLIVDYYWL"
     gene            554..1543
                     /locus_tag="U1396_001938"
     CDS             554..1543
                     /locus_tag="U1396_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HEM5343078.1"
                     /translation="MNILFTLNDAFVPQVAACMGSIMRTLNEDDTCHFYLFSDGISQQ
                     NKEKLHQFVTDGGNKLTIVELENLESYFDFEVDTNGWASVVLARLLVDKLLPKEVDRI
                     IYLDGDTLVLENIRELWEVDLEGKVLGMCPEPTASSERREGLNLGTYTYHNAGVLLID
                     LKRWRSKSIGTIIFDYYKEKNGELFANDQDALNGALKEEIKTLSITYNYFNIFDVYPY
                     RTLEKLSRPSTFISKEEFVKIRKQPRIVHFLGEERPWRIGNKHRFREDYVSALNQTPW
                     RGTQFESGWQFYFFCFNLFNMIMKPFPMLRYKIITVLIPVFMKYRKIRLQKGV"
     gene            1546..>2155
                     /locus_tag="U1396_001939"
     CDS             1546..>2155
                     /locus_tag="U1396_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5343079.1"
                     /translation="MKFSVIIPAYNVADYLEECVYSVLNQTYEEFEILLVDDGSTDGI
                     TSNICDKLAAKDDRVKVFHQTNGGQSIARNTGIKNASGDYILFLDGDDFWTDVHFLDE
                     INEEIHSHEEVVDAVIYPFSYWYGNADIRVRDFPQKLPRHEIITDSVLLVETGALIAP
                     VWNKCVRRELFADSLMFPDGLMYEDGIWCADLLKIITCCCVIE"
BASE COUNT          686 a          285 c          448 g          736 t
ORIGIN      
        1 ttacttgtta gctatctatt cctacataat agaggtggtg tcgtgcactt tgtgaaagtg
       61 atgataaaca gtttatttat caataacaga aacgatcatc ttaatggtat tttaacagtt
      121 ggtatttttg gttattttgg ctggtttgtc actcaactac ctctctggtt aattttcata
      181 gatattttca tttttacgct attattattt aatgatggaa atttaaagat aagtaaaaca
      241 gaaggtcttg tgtcgttatt tgtactccct gttcaggtag ctatcattgt agcgggcatg
      301 tattttgcat ggacaccgac agctattggg ccaaatgcaa tgatttctca aggggcacaa
      361 ggaagatact ttactccatt tttagtctat ctatttccgg catgtttaat gttaaaagag
      421 caggtaagtg tatcggtaaa acagaagtat ttgatacggt ggatcactgg cacagtagtc
      481 attaacttta tcatgtatct atttttgata gtagattatt attggttgta agaagatagt
      541 ggaagaggga aacgtgaata tattatttac attgaatgat gcttttgtcc cgcaagttgc
      601 agcttgtatg ggctcaatca tgcgaacatt aaacgaagac gatacatgcc atttttatct
      661 tttctcagat ggtataagtc aacagaataa agaaaaactt catcaatttg ttaccgacgg
      721 aggaaataaa ttgacaatcg ttgaattgga aaacttggaa tcatattttg attttgaagt
      781 tgacacaaat ggttgggctt cggttgtact tgcaagatta cttgtagata aattactacc
      841 caaagaagtt gatagaatca tttatttaga tggagatact ttagttttag agaatattcg
      901 ggagctatgg gaagtagatt tggaggggaa agtccttgga atgtgcccag aaccgacagc
      961 ttcgtctgag agaagagaag gcttaaattt gggtacgtat acatatcata atgcgggagt
     1021 tcttctaatc gatttgaaac ggtggcgttc aaaaagtata ggaacaatta tttttgatta
     1081 ttataaagaa aaaaatggag agctttttgc taatgatcaa gatgcactga atggagcatt
     1141 gaaagaagag ataaaaacac tctcaatcac ttataattat tttaatattt ttgatgttta
     1201 tccatatcgt acgttggaaa aattaagtag gccttcaacg tttatttcaa aagaagaatt
     1261 tgtaaaaatt cgtaagcaac cacgtattgt tcatttttta ggtgaagaac gtccatggag
     1321 aatcggaaat aaacatcgat ttagagaaga ctatgtttct gcattaaatc agacgccatg
     1381 gagaggtact caatttgaga gtggttggca gttttacttt ttctgcttta atctttttaa
     1441 catgattatg aagccttttc ctatgttgcg ctataaaatt attacagtct taattcctgt
     1501 attcatgaaa tataggaaaa ttagattaca aaaaggagtc taggtgtgaa gttttccgtt
     1561 attatcccag cgtacaatgt tgctgattat ctggaagaat gtgtgtatag tgtactgaat
     1621 cagacttatg aagaatttga aatattgttg gtagatgacg gttctacaga tggtataacc
     1681 tccaatatat gcgataaatt agcagctaaa gatgataggg tgaaggtatt tcatcaaact
     1741 aatggtgggc aatcaattgc gagaaataca ggaataaaaa atgctagtgg tgattatatt
     1801 ttatttctag atggtgatga tttttggact gatgtgcatt ttttagatga aatcaatgaa
     1861 gaaatacact ctcacgagga agtggtagat gcagtaattt atccattttc atactggtat
     1921 ggtaatgctg atataagagt tcgtgatttc cctcaaaaat tacctagaca tgaaattatt
     1981 actgattctg ttctacttgt agaaacaggc gcattgattg ctcctgtttg gaacaagtgt
     2041 gttcgcagag aactatttgc agattctttg atgtttccag atgggttaat gtacgaagat
     2101 ggtatttggt gtgcagacct attaaaaata ataacttgtt gttgtgtcat tgaaa
//
LOCUS       DASGBY010000188         2036 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.189, whole genome shotgun sequence.
ACCESSION   DASGBY010000188 DASGBY010000000
VERSION     DASGBY010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.189"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(23..787)
                     /locus_tag="U1396_001940"
     CDS             complement(23..787)
                     /locus_tag="U1396_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM5343080.1"
                     /translation="MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPI
                     IVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKELTDDDLLYQAIIENLQRSNLNP
                     IEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
                     RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSK
                     TLGTATKIIKKKNGSGEIRINFNDLDEFERIINNFK"
     gene            complement(848..2035)
                     /locus_tag="U1396_001941"
     CDS             complement(848..2035)
                     /locus_tag="U1396_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018373568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEM5343081.1"
                     /translation="MPYMKKYLKFAILFVIGFFGGLIGALSASFFQPRVQQANSAITS
                     VSNVQYNNETSTTKAVEKVQNAVVSVINYQKSANNSLGAIFGNIESSDELAVAGEGSG
                     VIYKKDGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISADKV
                     TAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSKDGQTISTN
                     AIQTDTAINPGNSGGPLINTQGQVIGITSSKITSSSANSSGVAVEGLGFAIPANDAVA
                     IINQLEKTGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTELTSGVVIVSTQSGLPADG
                     KLETFDVITEIDGEAIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEE
                     LSE"
BASE COUNT          580 a          383 c          360 g          713 t
ORIGIN      
        1 taaaaataaa ttgtaaacaa gtctatttaa aattgttgat aattctttcg aattcatcga
       61 ggtcattaaa gttaatccga atttctccgc tcccgttttt cttcttgata atttttgtag
      121 ctgttccaag agttttactg agtgaatctt cctgttcttt taaaaattgg tcgcgttgtt
      181 taagcttagt gtgttttttc ttatttgcag ctattaattt ttcaagcgta cgcacactta
      241 aatcctttga taaaatgagt tgaacccatt cggcttgctt ttcttctgaa aatgacacca
      301 attgtcgcgc gtgcccttgt gaaatttttc cttcttctac agcttgttta gtctgagatg
      361 atagatttag taggcgcaat aaattactga tatatggtct tgattttccc atgatttgag
      421 caacttcatc atgtgttaac cctctactaa tcaatttttg ataagaggct gcttcttcta
      481 tcggatttaa gttagaacgc tgcagattct ctatgatagc ctgatagagt aaatcatcat
      541 cagttagttc ctttaccact gctggtattg tagtcagtcc agctaattga ctggctcgca
      601 accttctttc tccagctaat aattcgtatc cgataataga agattttctt acaataatcg
      661 gttgaattaa gccattttcc ttaatagatt gagcgagctc aagtagctcc ttttcatcaa
      721 aatgaattct tggctgatag ggattgggat ggatttctga aatatttagt gtacgtaatt
      781 cttccatata tccttattct agcaaaaaaa atgagacttt acaattgtgt aaagtctcat
      841 ttgtcaatta ttcgctaagt tcttctgtag aatgtgtcaa cttaatgtca acagtttgtt
      901 tctgattatt gcggtaataa gttacagtga ttgtatctcc aatttgatgt ttgtagagag
      961 cgctctggag gtcactctta ttttgaatag cttctccgtc aatctcagta ataacatcaa
     1021 aagtttctaa ttttccatct gcaggtagcc cactttgtgt agagacaatt actacaccgg
     1081 atgttaattc cgtatttgat aatccagctt tttctaattg actagttgac aaggtcgtca
     1141 agttaaccat atgaactcca agagcaggtc ggctaacttg tccagttttt tcaagctgat
     1201 tgataatagc tacggcatca tttgcaggaa tagcaaatcc caacccttct acagccacgc
     1261 ctgagctatt tgcagaactt gaggtaattt tgctagaggt aatgcctatc acttgtcctt
     1321 gggtattgat taacggtccg ccagagtttc cagggttgat agctgtatca gtttgaatag
     1381 cgttagttga gattgtttgt ccatcttttg attgtgaagt aactgtccga cttaagctag
     1441 aaataatacc ctgggtaact gtattggcgt agacgctacc tagaggacta ccaattgcga
     1501 tagcagtttc tccaacttta attgtatcgg aatcagcaaa ttcagcaaca gcagtgactt
     1561 tatctgctga tatttttata acagctatat cagaatatgt atcagaacca acaagttcac
     1621 cgctaatttt ttctccagat gctaaaagga tatcaatctt ttctgcgtta ttaataacat
     1681 gcgtatttgt cacaatatag gcatattgac catctttttt gtagataaca ccagatccct
     1741 ccccagcaac ggctagttcg tcagatgatt caatatttcc aaagatagca ccaagactat
     1801 tgttggctga cttttggtaa ttaataacag acacaacagc attttgtact ttctctacag
     1861 cctttgtagt agaagtttca ttattatatt gaacattgct gacactagtg atggcagaat
     1921 ttgcttgttg aacccgtggc tggaagaaag aggctgataa ggccccgata agacccccaa
     1981 aaaatccaat tacaaataaa atcgcaaatt tcaaatattt tttcatataa ggaatc
//
LOCUS       DASGBY010000189         1951 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.190, whole genome shotgun sequence.
ACCESSION   DASGBY010000189 DASGBY010000000
VERSION     DASGBY010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.190"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            151..1695
                     /locus_tag="U1396_001942"
     CDS             151..1695
                     /locus_tag="U1396_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEM5343082.1"
                     /translation="MSLQEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVK
                     GKKTGNFAKSDWMDIEKQRGISVTSSVMQFDYAGKRVNILDTPGHEDFSEDTYRTLMA
                     VDAAVMVVDSAKGIEAQTKKLFEVVKHRNIPVFTFINKLDRDGREPLDLLQELEEVLG
                     IASYPMNWPIGMGKSFEGLYDLHNKRLELYRGDERFASLDEGDKLFGSNPFYAQVLDD
                     IELLAEAGNEFSEQAILDGDLTPVFFGSALTNFGVQTFLDTFLEFAPEPHGHKTTTGD
                     VIDPLNKDFSGFVFKIQANMDPRHRDRIAFVRVVSGEFERGMAVNLPRTGKGAKLSNV
                     TQFMAESRENVENAVAGDIIGVYDTGTYQVGDTLTVGKNKFEFEPLPTFTPEIFMKVS
                     AKNVMKQKSFHKGIEQLVQEGAIQLYKNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAE
                     VVMTPMGKKTVRWIKPEDLDERMSSSRNILAKDRFDQPVFLFENDFALRWFADKYPDV
                     ELEEKM"
BASE COUNT          550 a          422 c          483 g          496 t
ORIGIN      
        1 ctattcttca atagtttgaa aaattccctt atttccgata taataagaga gttgtctagt
       61 aaagaataag gatgaatcca gtgtaaatcg aataggataa gagctcagct ctgctatgaa
      121 tcaaaataca aagaatgaaa aggaaacatt atgtcactac aagaagaaat caagaaacgc
      181 cgcacctttg cgattatctc tcacccggac gcggggaaga ccactattac tgagcagttg
      241 ctctactttg gtggtgaaat tcgtgaagca ggtacggtca aggggaaaaa gactggtaac
      301 tttgccaaat ctgactggat ggatattgag aagcaacgtg gtatctctgt tacctcatct
      361 gtcatgcagt ttgactatgc aggcaagcgg gtcaatatcc tagatacacc agggcacgag
      421 gacttctcag aagacactta ccgtaccttg atggcggtgg atgcggctgt catggtggtg
      481 gactctgcca agggtatcga ggcccagacc aaaaagctct ttgaggttgt taagcaccgc
      541 aacattcctg ttttcacttt tatcaacaag ttggaccgtg acggtcgtga gccacttgat
      601 ttattgcagg agttggaaga agtcttgggc attgccagct atccaatgaa ctggccgatt
      661 ggtatgggga aatccttcga gggactctat gacctccata acaaacgttt agaactctat
      721 cgaggtgatg agcgttttgc cagcttggac gaaggcgaca agctctttgg ttctaatccc
      781 ttttatgcac aggttttgga tgatattgaa cttctggcgg aagctgggaa tgaattttca
      841 gaacaggcga ttttggacgg cgatttgaca cctgttttct tcggctcagc cctgacaaac
      901 tttggtgtgc agaccttcct tgacaccttc ttggaatttg ctccagagcc acatggtcac
      961 aagacaacga caggggatgt cattgacccg ctcaataaag atttttcagg ctttgtcttc
     1021 aaaatccaag ccaacatgga ccctcgtcac cgcgaccgta tcgcctttgt ccgtgtggtt
     1081 tcgggcgaat ttgaacgcgg tatggcggtt aacctgcctc gtacaggtaa gggagccaag
     1141 ttgtccaacg tgacgcagtt catggccgag tcccgtgaga atgtggaaaa tgcagtagcg
     1201 ggtgacatta tcggggttta tgatacaggg acctatcagg taggagatac cttgaccgtc
     1261 ggaaagaaca aatttgagtt cgaaccgcta ccgaccttca cccctgaaat tttcatgaaa
     1321 gtttctgcta aaaacgtcat gaaacaaaaa tccttccaca agggaatcga gcaactggta
     1381 caggaagggg ctatccagct ctataagaac taccagactg gcgagtatat gctgggtgcc
     1441 gttggtcagc tccagtttga agttttcaaa caccgcatgg aaggcgagta caatgccgaa
     1501 gtagtcatga ctccaatggg taaaaagaca gtccgctgga tcaagccaga agacctggat
     1561 gaacgcatgt catcaagccg caacatccta gccaaagacc gctttgacca accagttttc
     1621 ctttttgaaa acgacttcgc cctccgctgg ttcgcggaca aatatccgga tgtggagttg
     1681 gaagagaaga tgtagcggaa agacagaaat cagtaatcaa caaagttgat ttgatttcgt
     1741 cgtctttccc tcgcaagggc gtccaaagaa ctcgagcaat gcgaagagtg atttgctgac
     1801 gcctactgcg tcgaggttca gtgaaccttt tctagtggga gatgtgaact gacggtagtc
     1861 agttcacatt gataaagata actataaaag gatatgatag aatacatgaa gctgggcaag
     1921 acctctatga tgtcttgccc agcttcattt t
//
LOCUS       DASGBY010000190         1907 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.191, whole genome shotgun sequence.
ACCESSION   DASGBY010000190 DASGBY010000000
VERSION     DASGBY010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.191"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..324
                     /locus_tag="U1396_001943"
     CDS             <1..324
                     /locus_tag="U1396_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HEM5343083.1"
                     /translation="EKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIAEEFQV
                     SRQAVYDNIKRTEKLLEDYEMKLHMYSDYVVRSQIFDEILNKYPEDAYLKEKIAILTS
                     IDNRE"
     gene            337..>1907
                     /gene="ffh"
                     /locus_tag="U1396_001944"
     CDS             337..>1907
                     /gene="ffh"
                     /locus_tag="U1396_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEM5343084.1"
                     /translation="MAFESLTERLQNVFKNLRRKGKISESDIQEATKEIRLALLEADV
                     ALPVVKDFIKKVRERAIGHEVIETLNPAQQIIKIVDEELTAVLGSETSEIIKSPKIPT
                     IIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPV
                     FELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMAELREIKEFAQPNEI
                     LLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGT
                     GEKITDIETFHPDRMSSRILGMGDMLTLIEKASKEYDEKKSLELAEKMRENTFDFNDF
                     IDQLDQVQNMGPMEDLLKMIPGMAGNPALANLKVDEREIARKRAIVSSMTPAERENPD
                     LLTPSRRRRIANGSGNSFVEVNKFIKDFNQAKTMMQGVMSGDMNKMMKQMGINPNNLP
                     KNMPNMNGMDMSALEDMMGGAGMPDMSQLMGGAGMPDMSQMFGGGLKGRIGEFAMKQA
                     MKRQANKIKKAKKKR"
BASE COUNT          618 a          373 c          438 g          478 t
ORIGIN      
        1 gaaaaaacca accgaatgaa tgccttattt gaattctatg cagccttgct aacagacaag
       61 caaatgaact acatcgagct ctattatgcc gatgattaca gtttggctga gattgctgaa
      121 gaatttcaag tcagccgtca ggcggtctat gataacatta aacgaacaga aaaattgctg
      181 gaagactacg agatgaagct acatatgtat tctgactatg tagtgcgtag ccagattttc
      241 gatgaaatac tgaacaagta tccagaagat gcttatttga aggaaaaaat cgctattcta
      301 accagtattg ataatagaga ataagaggag aagtatatgg cttttgaaag cttaacagaa
      361 cgtttacaga atgtttttaa aaatctgcgt cgtaagggga aaatttctga gagtgatatt
      421 caggaagcaa ctaaggaaat tcgtctggcc ttactagaag ccgacgttgc cttgccagtt
      481 gtaaaagact ttatcaagaa ggtgcgtgaa cgtgctatcg gtcatgaagt cattgaaacc
      541 ctgaaccccg ctcaacaaat catcaaaatc gttgatgaag aattgacggc tgtattaggt
      601 tctgaaactt cagaaattat caaatcacca aaaattccaa ctatcattat gatggctgga
      661 ttgcaggggg ctggtaaaac gaccttcaca ggtaagttgg ctaataaact caagcaggaa
      721 gaaaatgccc gtccactctt gattgctgcc gatatttatc gtccagctgc cattgaccag
      781 ttgaagaccc ttggtcaaca aattgatgta cctgtattcg agttgggcaa tcaagtccct
      841 gccctggaga ttgtacgcca aggtttagaa caagccaaag ctaatcataa tgactacgtt
      901 ctgattgata cggccggtcg tttgcagatt gaccaagccc ttatggccga attgagagaa
      961 atcaaagagt ttgctcagcc aaacgaaatc ctcttggtcg tcgatgccat gattggtcag
     1021 gaagctgcca acgttgcgcg tgagttcaat gatcaactgg ctattactgg tgtgattttg
     1081 accaagattg acggtgatac acgtggtggt gcagccttgt ctgtccgtca cattactggt
     1141 cagccaatca aattcaccgg tactggtgaa aaaatcacag atattgaaac cttccaccca
     1201 gaccgtatgt cctcgcgtat tttgggcatg ggtgacatgc tgaccttgat tgaaaaagcc
     1261 agcaaagaat acgatgagaa gaaatcacta gaactcgctg aaaaaatgcg tgagaatacc
     1321 tttgatttca acgatttcat tgatcagctg gaccaagttc aaaatatggg accaatggaa
     1381 gacctgctga agatgattcc tggtatggct ggtaacccag cacttgccaa cttgaaagtt
     1441 gacgagcgtg aaattgcaag aaaacgagct atcgtatctt ctatgacacc agccgaacga
     1501 gaaaatcctg atttgttgac accgagccgt cgtcgtcgta ttgctaacgg ttctggaaat
     1561 agctttgtcg aagtcaataa atttatcaag gatttcaacc aagcgaaaac catgatgcag
     1621 ggtgtcatgt caggcgacat gaacaaaatg atgaaacaaa tgggaatcaa cccaaataat
     1681 ctccctaaaa acatgccaaa catgaacggt atggatatgt ctgctctgga agatatgatg
     1741 ggtggtgcag gcatgcctga tatgagccaa ctgatgggag gagctggtat gccagatatg
     1801 tcccaaatgt ttggaggcgg tttgaaaggt agaatcggcg agtttgctat gaaacaagcc
     1861 atgaaacgcc aagccaataa aatcaagaaa gccaaaaaga agagaaa
//
LOCUS       DASGBY010000191         1901 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.192, whole genome shotgun sequence.
ACCESSION   DASGBY010000191 DASGBY010000000
VERSION     DASGBY010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.192"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            168..917
                     /locus_tag="U1396_001945"
     CDS             168..917
                     /locus_tag="U1396_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEM5343085.1"
                     /translation="MQKIDLLDGERIDQLFSTDVQIIQNREVFSYSIDSVLLSRFPKM
                     PAQKGLIVDLCSGNGAVGLFASTRTKAQIMQVELQERLADMNRRSIALNGLEEQVSVI
                     NDDLANLPQYDLRSKVDLMLCNPPYFKVDKDSNLNESEHYLLARHEIATNLDSICQVA
                     QQVLKSNGRLAMVHRPDRFLDILDKLRTYKLAPKRIQFVYPKASKEANMLLIEAIKDG
                     SVDGLHILPPLVVHEENGDYTPAIREIYYGK"
     gene            907..1179
                     /locus_tag="U1396_001946"
     CDS             907..1179
                     /locus_tag="U1396_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM5343086.1"
                     /translation="MENKAYFYVLECADGSLYTGYTTDVEKRLATHNRGKGAKYTRGR
                     LPVSLLYQEAFASKQEAMSAEALFKKRSRQSKLDYIAEMTKKPRTK"
     gene            complement(1195..1806)
                     /locus_tag="U1396_001947"
     CDS             complement(1195..1806)
                     /locus_tag="U1396_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5343087.1"
                     /translation="MVTVLIVKAHPLDAQKSYALRALEEFQTRYASLHPEDQIEVVDV
                     FEDQIPALDKSLLEAMGAAKKGESISPDQAKQLDRYNALTQQFLMADKIVVVNPLWNL
                     NVPSQLVSWVNTINVAGLTFKYGPEGSIGLVKDKKLLHIQSNGGVYAGQDPAAQYIKS
                     IFEFLGFEDIHQVFIEGQSADPSQAQAIFEEAMGKIDAILEVF"
BASE COUNT          512 a          427 c          430 g          532 t
ORIGIN      
        1 cagtcgtaat ggtccgattt ggagtgtaaa acacgaacaa atctgccaat caaccactgt
       61 gctgagatgt tgacacgaac actgagaagt gggccagggc tttttgccca gcctcttttc
      121 tttcaaaata tacagtgatt ttcattcaaa gatggtataa tatacctatg caaaaaattg
      181 atttactaga cggagagcgg atcgaccagc tcttctcgac agatgttcag attattcaaa
      241 atcgagaggt ttttagctac tcgattgaca gcgttcttct ttcgcggttt ccaaaaatgc
      301 ctgctcagaa ggggctgatt gttgaccttt gtagcggaaa tggggccgtg ggtctctttg
      361 cctccactcg caccaaggct cagattatgc aggtcgagtt gcaggaacgc ttggcggata
      421 tgaaccgccg ctccattgcc ctcaatggtt tggaggaaca ggtctcggtt atcaatgatg
      481 acttggcaaa tctgccccag tatgatctgc ggtccaaggt tgatttgatg ctctgcaatc
      541 ctccctactt caaggtagat aaagactcaa acctcaatga aagcgagcat tatctcctag
      601 ctagacacga gattgcgacc aacctagaca gcatttgtca ggtggcccaa caggtgctca
      661 agtccaatgg tcgcttggcc atggttcaca ggcccgaccg gtttttagat attttggaca
      721 agttgagaac ctacaaattg gctcccaaac gcatccagtt tgtctatccc aaggccagca
      781 aggaggccaa tatgttgctg attgaggcta tcaaggacgg ctcggtggac ggtctgcata
      841 tcctgccacc tctggttgtc catgaggaaa atggcgacta tactccggct attcgtgaga
      901 tttattatgg aaaataaggc ctacttttat gttttggaat gtgccgacgg gagtctttat
      961 actggctata cgactgatgt ggagaagcgg cttgctaccc ataatcgtgg gaaaggggcc
     1021 aagtacaccc gcggacgctt gcctgtcagc ttgctctatc aagaagcctt tgctagtaag
     1081 caggaagcca tgtctgccga ggctttgttt aagaaacgca gtcggcagag taaattagat
     1141 tatattgcag aaatgacaaa aaaacctcgt acaaaatagt acgaggcttt ttatttaaaa
     1201 tacttccaaa attgcatcaa ttttccccat agcttcttca aaaatagcct gagcctggct
     1261 tggatcggca gattgccctt cgataaagac ttgatgaata tcttcaaagc ctaaaaattc
     1321 aaagatagac ttgatgtact gggctgctgg atcctgacct gcataaacac caccattgga
     1381 ctggatgtgc aggagctttt tgtccttgac caaaccgata gagccttctg gaccatactt
     1441 aaaggtcagg cctgctacat tgatggtatt gacccaagat accaattgac ttggcacatt
     1501 gagattccag agaggattga cgacaactat cttatccgcc ataagaaatt gctgggtcaa
     1561 ggcattgtaa cggtccaatt gctttgcttg atcaggactg atactctcgc cttttttagc
     1621 agctcccata gcctctaaca aagatttgtc caaggctgga atctggtctt caaaaacatc
     1681 cactacttct atctgatctt ctgggtgcaa actggcgtaa cgagtttgaa actcttccaa
     1741 agcccgcaag gcgtaggact tttgtgcgtc gagggggtgg gcctttacaa ttaatacagt
     1801 taccattgtt catctccttt gttactaatt attgataatt atattctact ctttttgatt
     1861 tgaaattcaa atcatttgct cgaagcaaaa ggctggtctc c
//
LOCUS       DASGBY010000192         1892 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.193, whole genome shotgun sequence.
ACCESSION   DASGBY010000192 DASGBY010000000
VERSION     DASGBY010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.193"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(667..1866)
                     /locus_tag="U1396_001948"
     CDS             complement(667..1866)
                     /locus_tag="U1396_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEM5343088.1"
                     /translation="MAKLTVKDVELKGKKVLVRVDFNVPLKDGVITNDNRITAALPTI
                     KYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQEVAFIAGATRGAELE
                     AAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRAH
                     ASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLE
                     KADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKALLEKANGKLILPVDSKEANA
                     FAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQA
                     GTIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPG
                     LAALTEK"
BASE COUNT          556 a          448 c          336 g          552 t
ORIGIN      
        1 aacatgattt gttaaaaaat gattctaaat gcacataatg ttatgaatca ttcggacatt
       61 ttagtgtaaa aataatacca gatacttcaa cgccaccaaa aaaaagaact cccaacttta
      121 caaaaaaata agtatcctat agttgattat aatacgagac aagaagccac aagcataagt
      181 cgagcttaaa aaggtgagtt tacgaagtaa tactcaatga aaatcaaaaa aatgattaca
      241 caacaaaatt tttcctccga gccgacactt cagagcgtaa attgcattta aaaagagacc
      301 ggagctcaag ccccagcctc atttcgtcgc aattttttac ttttcagtaa gagctgcaag
      361 tcctggaagc acttttcacc ttgctagact ttctaactcg cttagcttcg tagaaactct
      421 acgcgatgca caaaatgcaa cggaaatccg ttgcatttta gcctttacct aggctgattt
      481 tctaaactca ctacgttcac agaaaatcta gcctttgtac tagaaaagag ttggtctccc
      541 aactcttttc atcgttcatc tttcatacgc agtagctgaa tggcagttca ctttgctacg
      601 cttgtgacca acctattcag ccttgcgggg gtgcgtctac ggaatcatag attcctgact
      661 taccgcctat ttttcagtca aagctgcaag tcctggaagc actttacctt cgaggagttc
      721 cattgatgca ccaccaccag ttgagatcca tgagaacttg tctgcacggc caaggttgat
      781 cgcagctgcc gctgagtcac caccaccgat gattgatttc acgcctggtt gtttcacgat
      841 agcgtccatt acaccgattg taccagcttg gaagtctggg ttttcaaata cacccatagg
      901 tccgttccaa acaactgttt ttgcaccagt caacgcttcg tcaaacttag cgattgactt
      961 aggaccgatg tcaagaccaa ggaagccttc tgaaactgct tcaccttcag tgtcgcgaac
     1021 ttcagtgtat ccagcaaatg catttgcttc ttttgagtca actggcaaga tcaatttacc
     1081 attcgctttc tcaagaagcg cctttgccac atccaattta tcttcttcta caagtgagtt
     1141 accaatttcg ataccttgag ctttgtagaa tgtgtaagtc ataccaccac cgataagaac
     1201 tttgtctgct ttttcaagaa ggttctcgat aacaccaatc ttatcagata cttttgaacc
     1261 accaaggatt gccacaaatg gacgctctgg agtttcaaca gcttcttgga tgtatgcaat
     1321 ttcgttttcc aaaaggaaac cagctactgc tttttctacg tttgctgaga taccaacgtt
     1381 tgatgcgtgt gcacggtgtg cagtaccaaa tgcatcgtta acgaagatac catcaccaag
     1441 tgaagcccag tatttaccaa gttcttcgtc gtttttagat tctttcttac catcaacgtc
     1501 ttcgaaacga gtgttttcaa caaggagaac ttgtccatct tccaaagcat tgatagccgc
     1561 ttccaattca gcaccacgag tagcaccagc gatgaaagca acttcttgac ccaatttagc
     1621 tgccaagtca gctgctacag gagccaatga tttaccttct ttgtcagctt cttctttcac
     1681 acgaccaagg tgagagaaaa gaattgcacg tccaccttgc tcaagaatat acttgatagt
     1741 tggaagagct gctgtaatac ggttatcgtt agtgataacg ccatctttca aaggcacgtt
     1801 gaagtccaca cgaacaagaa cttttttgcc tttcaattct acatctttaa cagtcaattt
     1861 tgccattaga taagaactcc ttaaattata tt
//
LOCUS       DASGBY010000193         1826 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.194, whole genome shotgun sequence.
ACCESSION   DASGBY010000193 DASGBY010000000
VERSION     DASGBY010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.194"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            48..1295
                     /locus_tag="U1396_001949"
     CDS             48..1295
                     /locus_tag="U1396_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002992300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEM5343089.1"
                     /translation="MQKNIAVAGTGYVGLSIAVLLAQHHQVTAVDIIQEKVDLINSKK
                     SPIQDDYIEKYLAEKDLNLVATLDAEKAYKDAEIVVIAAPTNYDSAKNYFDTSHVEAV
                     IQMVLSVNPQALMVIKSTIPVGFTQSMREKFGTENIIFSPEFLRESKALYDNLYPSRI
                     IVSYENNSPQTVIEGAKLFAKLLQQGALKENVEVLHMGATEAEAVKLFANTYLALRVS
                     YFNELDTYAELKGLDTESIIRGVGLDPRIGDHYNNPSFGYGGYCLPKDTKQLLANYND
                     IPQNMMTAIVESNRTRKDFIADQILKIAGYYDYSSHDQYSQSGEKEVIIGVYRLTMKS
                     NSDNFRQSSIQGVMKRLKAKGAKVIIFEPTLENGSTFFGSKVINNLNQFKSKSHAIVA
                     NRYDSVLDDVLDKVYTRDIFRRD"
     gene            complement(1406..>1826)
                     /locus_tag="U1396_001950"
     CDS             complement(1406..>1826)
                     /locus_tag="U1396_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5343090.1"
                     /translation="RKLSLNRFFSRTFGQTVTPREVVQKTLNFSEELKFYYELYQILL
                     FHFQEMNSKYFFELLEDNLDLVNPAFKTVFKTFLKYKTYITNAMELPYSNAKLEATNK
                     LIKDIKRQAFGFRNFKTKIYIALNIKNERTNFVLSRC"
BASE COUNT          571 a          290 c          376 g          589 t
ORIGIN      
        1 tactggtaaa ggaacttatt agtaaaatac aatatggagg ttttaagatg caaaaaaata
       61 tcgccgtcgc aggaactggc tatgtcggtc tatctatcgc tgttttattg gcgcagcatc
      121 atcaggttac agctgtggat attatccaag aaaaagttga cttaatcaat tctaagaagt
      181 ctccgattca ggatgattat attgaaaaat atctagctga aaaagactta aatctagttg
      241 caacgttgga tgcagaaaaa gcctacaaag atgcagaaat tgttgtaatc gctgctccaa
      301 ctaactatga tagtgctaag aactactttg atacaagtca tgtcgaagca gttatacaaa
      361 tggtattatc ggtcaaccct caagctttaa tggttatcaa atcaacgatt cctgttggtt
      421 ttacccaatc tatgcgtgaa aaatttggta cggaaaatat tatttttagc ccagaatttt
      481 tacgggaatc caaagcactt tatgacaatc tttatccctc gcgtatcatt gtatcttatg
      541 agaataattc accacaaaca gttattgagg gggcgaagct ttttgcaaaa cttttacaac
      601 aaggtgctct aaaagaaaat gtcgaagtat tacacatggg tgctacagaa gcagaagcag
      661 tcaagctgtt tgctaatact tatttagctt tgcgtgtttc ttacttcaat gaattggata
      721 cttatgcgga gctaaaagga ttagatacag aatcgattat tcgaggagtt ggtttggatc
      781 ctcgtatcgg tgatcattat aataatccct ctttcggata tgggggttat tgcttgccaa
      841 aagatacaaa gcagttattg gctaattaca atgatattcc gcagaacatg atgacagcta
      901 ttgtagagtc aaataggact cgtaaggatt ttattgctga tcaaattttg aagatagctg
      961 gttattatga ttattcgtca catgatcaat attctcaatc gggagaaaaa gaagtgatca
     1021 tcggtgtgta tcgcttgaca atgaagagta attctgataa tttccgtcaa agttctattc
     1081 agggagttat gaaacgtcta aaagccaaag gggcaaaagt gattattttt gaaccgactt
     1141 tagagaatgg ttccaccttc tttggttcaa aagtgattaa taatttgaat cagtttaaat
     1201 ctaaaagtca cgcaattgtt gcaaatagat acgactctgt cttggatgat gtattagata
     1261 aagtgtatac gcgtgatatt tttagaagag actagtcttc taaagctaca tttttaattg
     1321 tgtgtttaga tttctagggg agaaggctcg ttgctcttct ctctcttttt tggctctttg
     1381 tcaactgtag tgggtagata aaaagctaac acctagagag gacgaaattc gttctctcat
     1441 ttttgatgtt taaagcaata tatatcttgg ttttaaagtt cctaaagccg aacgcttgcc
     1501 tcttgatgtc tttgatgagt ttattggtcg cttccagctt agcgttggaa tatggaagct
     1561 ccatggcgtt cgtgatgtac gttttatact ttagaaaagt tttaaaaaca gttttaaagg
     1621 caggattgac aagatccaga ttgtcttcta gaagctcgaa gaaatatttc gagttcatct
     1681 cttggaaatg gaagagaagg atctgataga gttcgtaata gaatttcagt tcctcagaga
     1741 aattcaatgt cttctggaca acctctctcg gtgttactgt ttgcccaaaa gtgcgagaaa
     1801 agaagcgatt cagagacagt tttcga
//
LOCUS       DASGBY010000194         1791 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.195, whole genome shotgun sequence.
ACCESSION   DASGBY010000194 DASGBY010000000
VERSION     DASGBY010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.195"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(62..1549)
                     /locus_tag="U1396_001951"
     CDS             complement(62..1549)
                     /locus_tag="U1396_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1846 domain-containing protein"
                     /protein_id="HEM5343091.1"
                     /translation="MKKIAFDSTKYLNLQRDHILERIAQFEGKLYMEFGGKMLEDFHA
                     ARVLPGYEPDNKIKLLQELKDQVEIVIAINASNIEHSKARGDLGISYDQEVFRLIDTF
                     NDIDIYVGSVVITQYRNQPAADAFRKQLEKHGIKSYLHYPIKGYPSDIDHIISPEGMG
                     KNDYIETSRNLVVVTAPGPGSGKLATCISQLYHDQLHGVTSGYAKFETFPVWNLPLHH
                     PVNLAYEAATADLDDLNMIDPFHLQTYGKTAVNYNRDIEVFPVLNRTFERILNKSPYA
                     SPTDMGVNMVGYSIVDEEAAIEASKQEIIRRYYQTLVDFKAERVSEQAVKKIELLMNE
                     VGVTPADRKVVIAAREKAELTTSPALAIQLPTGEIVTGKTSDLLKPTATVLLNAIKQI
                     ANIDDETLLIEPNYIRPIQELKADYLDKTNTRLDASEILNALAITAQDSPLAARAMKE
                     LGQLNGSEAHSTVILSDEDKSVLRKLGINLTFDPIYQHNKFYQKN"
BASE COUNT          479 a          341 c          427 g          544 t
ORIGIN      
        1 ttgaatcctt gcttttttac tgttcacaaa aagacttgtc ggagcaagtc tttttgtgtg
       61 cttagttttt ctgataaaac ttattgtgtt ggtagatagg gtcaaaggta agattgatgc
      121 ctaatttacg aaggacactc ttgtcttcat cggataggat aacagtcgag tgggcttcgc
      181 taccatttaa ttggcctaat tctttcatgg cacgtgcagc aagagggcta tcttgtgcag
      241 tgatggcaag ggcgttaaga atttcgcttg catcgagtcg tgtatttgtc ttatccagat
      301 aatctgcctt caattcttga attggacgga tgtagtttgg ttcgatgaga agtgtttcat
      361 catcgatgtt agcaatttgc ttgatggcgt tgagaaggac agttgcagtt ggcttgagga
      421 ggtcggatgt cttacctgtt acaatctctc cagttggcaa ctgaatagca agggcagggc
      481 tagttgttag ctctgctttt tcgcgcgcag cgataacaac cttacgatct gctggcgtca
      541 caccgacttc attcatgagg agttcaatct tcttaactgc ttgctcgctc acccgctctg
      601 ccttgaaatc aaccaaggtc tggtagtagc ggcggatgat ttcttgcttg gatgcttcaa
      661 tcgcagcctc ttcgtccacg atggaatagc ccaccatgtt aacgcccatg tctgtcggtg
      721 aggcgtatgg tgatttgttc aaaatacgtt caaaggtacg gttgaggaca gggaagacct
      781 cgatatcacg gttgtagttg accgcagttt tgccgtaagt ttgcaggtgg aaggggtcga
      841 tcatgttgag gtcgtccagg tcagcagttg ctgcttcata ggccaagtta acgggatggt
      901 ggagtggtaa gttccacact gggaaggttt caaacttagc atagcctgat gttactccat
      961 gcaattggtc gtggtaaagt tgggagatac aggtcgccaa tttacctgaa ccaggtccag
     1021 gtgcggtgac aacgacgaga ttgcgactag tttcaatgta gtcatttttg cccatacctt
     1081 ctggtgaaat gatgtggtcg atatcagaag gatagccctt gattgggtag tggagatagg
     1141 acttgatgcc gtgtttttcc aactgcttgc ggaaggcgtc tgcggctggt tgattgcggt
     1201 actgggtaat gaccacagaa ccaacataaa tatcaatatc attgaaggtg tcaatcaagc
     1261 ggaagacttc ttggtcataa gaaataccca agtcaccacg tgccttagaa tgttcgatgt
     1321 tgcttgcatt gatggcgatg acgatttcta cttggtcttt taactcttgg aggagtttga
     1381 ttttgttatc tggttcatag ccaggtaaaa cacgggctgc gtggaaatct tccagcattt
     1441 ttccgccaaa ttccatatag agcttgcctt caaactgagc aattcgttct aaaatatggt
     1501 cacgttgcaa attcaagtat ttagttgaat caaatgcgat tttcttcatc aaataagtcc
     1561 tccaaatgtg tattaatctc tgggaaaaac aaaaatagct ccctaaaact agggagcctt
     1621 ttctccgacc tctcaaaaga ggtgcccgaa caatactata acaaaccgtg ctaatcttgt
     1681 caagaaaaag tcagacagaa gaaaagttaa acaagtgttt aaaaaatatt taatttttat
     1741 aaagttaaat attgacttta ttaaaataaa gtgtaaaata atattaaaca a
//
LOCUS       DASGBY010000195         1758 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.196, whole genome shotgun sequence.
ACCESSION   DASGBY010000195 DASGBY010000000
VERSION     DASGBY010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.196"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            219..1043
                     /locus_tag="U1396_001952"
     CDS             219..1043
                     /locus_tag="U1396_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5343092.1"
                     /translation="MITVQHIHKQFGDKVALDNISFDIQEGQIFGFLGPSGSGKTTMI
                     KIITGQLPADSGKSYLLGKESTLLSPEDFEAMGLVSDSSGFFEKMTLENNLLFYAKFF
                     DVSPKEVEVILQKVGLLDSKKTIAEKLSTGMKQRMLLARALINSPKVLFLDEPTSGLD
                     PTTSKRIHELLLELKGKGTTIFLTTHDMAEATFLCDQLVLLNQGNLVEKGSPQDLIHK
                     YNVTKKVRVTFEDGSDTELLFSELTPEKLAQATTIHSCEPTLEDIFIQQTGATLNV"
     gene            1036..>1758
                     /locus_tag="U1396_001953"
     CDS             1036..>1758
                     /locus_tag="U1396_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5343093.1"
                     /translation="MYKRFLALLWLRTQVLVTNKNILLPVLMPYFMLLLFKFVMKTDD
                     TKAMDLMGICFSMAIGMSVGSPISAMISEEKEKNNLSTLLLTGVRPSEYVLSILCYPV
                     VISFVNLILFPAITQADVSGYMLSYSVIMLLTSLASILINLLIGATSQSQSKSQVTSM
                     MITMAVSMGPSLSLMNETVGQILKYSFLGAYIEFFKNPHFELLNQEFYYLLGWIVLIS
                     LALILYLGNWMKYFKNSLSGIKE"
BASE COUNT          557 a          294 c          370 g          537 t
ORIGIN      
        1 aattttttca aaaaaaacaa cgatttgcga ataagtaagt gagagggaaa attcccctca
       61 aggagataca cacttgaaaa aataaatcat tttccaaatg atttacgaat aaacaagtgt
      121 aggaaaaatg aaaggagaag aaggatgatt atagcaccag ctttatggat tttatcatgg
      181 tggaaaaaat aagtttgttt taatttaggg gagtagagat gataacagtt caacatatcc
      241 ataaacagtt tggagacaag gttgctttag acaacattag ctttgatatt caagaaggac
      301 aaatctttgg cttcttgggt ccctctggat cgggaaagac aaccatgatt aagattatta
      361 ccggccagct accagcagat agcggaaaat cctatctact aggtaaagaa tcgaccctat
      421 tgtcaccaga ggactttgaa gcaatgggct tggtcagtga ttcgagtggt ttcttcgaga
      481 agatgacctt ggaaaataat ttgttgttct atgcaaaatt ctttgatgtc agtccgaaag
      541 aagtagaggt tattctgcaa aaagtagggt tactggatag taaaaagaca attgcagaaa
      601 aactatctac aggtatgaaa cagcgaatgt tgcttgccag agccctgatc aattcaccaa
      661 aagtattgtt tcttgatgag ccgacaagtg gtctagatcc aacaacttca aaacggattc
      721 atgaactatt attggagcta aaaggtaagg ggacgacgat cttcttgacc acgcatgata
      781 tggcagaagc gacattctta tgtgatcaat tggttctatt gaatcaagga aatttggttg
      841 aaaagggaag tccgcaggat ttaattcata agtacaatgt cactaaaaaa gtgagggtta
      901 cttttgagga tggtagtgat actgagctgt tgtttagtga gttgacacct gagaagttag
      961 ctcaggcaac cactattcac tcttgtgagc cgactttgga agacattttt attcaacaga
     1021 caggagcaac cttaaatgta taaacgattt ttagccttgc tttggcttcg cacacaagtc
     1081 ttggtgacca ataaaaacat cctattgcca gtattgatgc cttacttcat gttattgctg
     1141 tttaagtttg tcatgaaaac agatgatacc aaggcaatgg atttgatggg aatttgtttt
     1201 tcaatggcta ttggtatgtc agtaggaagt cctatatctg caatgatttc tgaagaaaag
     1261 gaaaagaata atctgtctac cttgttactg acaggtgttc gcccaagtga atatgtgctg
     1321 tctattttgt gttatcctgt tgtcattagc tttgtcaacc tcattctatt tccagctatc
     1381 acacaggccg atgtatcagg atacatgctt agctactcag tcatcatgct cttgacatca
     1441 ttggcttcta ttctaatcaa ccttttaatc ggggcaactt cccaatctca atccaagtca
     1501 caggtgacct cgatgatgat cacaatggca gtatctatgg gacctagcct gtctttgatg
     1561 aatgagacag tggggcagat tttgaaatat agttttctag gagcttatat tgaatttttc
     1621 aaaaatcccc attttgaact tttgaatcaa gaattctatt acctattggg gtggattgtc
     1681 ctgattagtt tggccttgat tctctacttg ggaaattgga tgaaatattt taagaactcc
     1741 ctatcaggaa taaaagaa
//
LOCUS       DASGBY010000196         1691 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.197, whole genome shotgun sequence.
ACCESSION   DASGBY010000196 DASGBY010000000
VERSION     DASGBY010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.197"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            82..1563
                     /gene="guaB"
                     /locus_tag="U1396_001954"
     CDS             82..1563
                     /gene="guaB"
                     /locus_tag="U1396_001954"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM5343094.1"
                     /translation="MSNWDTKFLKKGFTFDDVLLIPAESHVLPHDIDLKTQLAPNLTL
                     NLPIISAAMDTVTDSKMAIAMARAGGLGVIHKNMSIAEQADEVRKVKRSENGVIIDPF
                     FLTPEHTIAEAEKLMATYRISGVPIVETLENRKLVGIITNRDMRFISDYSQPISTNMT
                     SDALVTAPVGTDLATAEAILHKHRIEKLPLVDENGRLSGLITIKDIEKVIEFPNAAKD
                     EFGRLLVAGAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIKEIREHFPTR
                     TLIAGNIATAEGARALYEAGVDVVKVGIGPGSICTTRVIAGVGVPQVTAIYDAAGVAR
                     EYGKTIIADGGIKYSGDIVKALAAGGHAVMLGSMFAGTDEAPGETEIFQGRKFKTYRG
                     MGSIAAMKQGSKDRYFQASVNEANKLVPEGIEGRVAYKGSVADMIFQMVGGLRSGMGY
                     VGAGNLTELHENAQFIEMSGAGLKESHPHDVQITNEAPNYSVQ"
BASE COUNT          500 a          321 c          388 g          482 t
ORIGIN      
        1 gacaaatgat ttcaaaatgt tatcataatt aaaatacaaa tagcaatcat gctacatatt
       61 aaataagaaa agaggaagaa aatgtcaaac tgggacacta aatttttgaa aaaaggcttt
      121 actttcgacg atgtattact tattccggct gaaagtcatg tattaccaca tgatattgat
      181 ttaaaaacac aattagcacc aaatttgacc cttaatcttc cgattatttc tgctgctatg
      241 gatacagtaa cagatagcaa aatggctatc gctatggcgc gtgcgggtgg tttgggcgtc
      301 atccataaga acatgtctat cgcggagcag gctgatgagg tgcgcaaggt aaaacgttct
      361 gaaaatggag tcattatcga tccattcttc ttaacaccag aacacaccat tgctgaagct
      421 gagaaattga tggctactta tcgtatttcc ggtgtgccaa tcgttgaaac attagaaaat
      481 cgtaagttgg tcggtattat caccaatcgc gatatgcgtt tcatttcaga ttactcacag
      541 ccaatttcga ccaacatgac cagcgatgct ttggtaacag cgccagttgg aacagatctt
      601 gcgactgcgg aggctattct tcacaagcat cgtattgaaa aattgccatt ggttgatgaa
      661 aatggtcgtt tgtcaggctt gattactatc aaagatattg agaaagtgat tgagttccca
      721 aatgctgcga aggatgaatt tggtcgtctc ttggttgcgg gtgctgttgg tgttacatct
      781 gatacttttg aacgtgcaga agctctcttt gaagcaggtg cagatgcgat tgtcatcgat
      841 acagctcatg gtcattcagc tggtgttttg cgtaagatca aagaaatccg cgaacacttc
      901 ccaactcgta ccttgattgc cggcaacatt gcgactgcag agggtgcacg tgccctttat
      961 gaagcagggg ttgatgtcgt taaagttggt attggtccag gttccatctg tacgactcgc
     1021 gtaatcgcag gtgtaggagt tcctcaggtg acggctattt acgatgcggc aggtgttgcg
     1081 cgtgaatatg gtaaaacgat tatcgctgat ggtggtatca aatattctgg agatattgtc
     1141 aaggcacttg cagcgggtgg tcatgccgtt atgcttggtt ctatgtttgc aggaacggat
     1201 gaagcaccag gtgagacaga aatcttccaa ggtcgtaagt tcaagaccta tcgcggtatg
     1261 ggctctatcg ctgccatgaa acaaggttca aaagaccgtt acttccaagc atctgtcaat
     1321 gaagccaaca aacttgttcc agaaggaatt gaaggacgtg tagcctataa aggttcagtt
     1381 gcagatatga ttttccaaat ggttggtgga cttcgctcag gtatgggcta tgtaggtgct
     1441 ggtaacttga ctgaattgca tgaaaatgca caattcatcg aaatgtcagg tgctggtttg
     1501 aaagaaagcc atccacacga tgttcaaatc acaaacgaag ctccaaacta ttcagttcag
     1561 taaaacaaaa acaagaccct cttgacaggg tctttcagat tgaagaaaaa gtccattttg
     1621 gacaattttc ttcaatcttt tttctttatg ttgaaaataa aaaactctca gaaacgccga
     1681 aatatcaatg t
//
LOCUS       DASGBY010000197         1589 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.198, whole genome shotgun sequence.
ACCESSION   DASGBY010000197 DASGBY010000000
VERSION     DASGBY010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.198"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            3..73
                     /locus_tag="U1396_001955"
     tRNA            3..73
                     /locus_tag="U1396_001955"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:35..37,aa:Gly,seq:tcc)
     gene            104..177
                     /locus_tag="U1396_001956"
     tRNA            104..177
                     /locus_tag="U1396_001956"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:138..140,aa:Ile,seq:gat)
     gene            184..255
                     /locus_tag="U1396_001957"
     tRNA            184..255
                     /locus_tag="U1396_001957"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:217..219,aa:Glu,seq:ttc)
     gene            264..353
                     /locus_tag="U1396_001958"
     tRNA            264..353
                     /locus_tag="U1396_001958"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:300..302,aa:Ser,seq:tga)
     gene            363..436
                     /locus_tag="U1396_001959"
     tRNA            363..436
                     /locus_tag="U1396_001959"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:397..399,aa:Met,seq:cat)
     gene            452..524
                     /locus_tag="U1396_001960"
     tRNA            452..524
                     /locus_tag="U1396_001960"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:485..487,aa:Phe,seq:gaa)
     gene            545..625
                     /locus_tag="U1396_001961"
     tRNA            545..625
                     /locus_tag="U1396_001961"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:579..581,aa:Tyr,seq:gta)
     gene            633..703
                     /locus_tag="U1396_001962"
     tRNA            633..703
                     /locus_tag="U1396_001962"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:665..667,aa:Trp,seq:cca)
     gene            711..783
                     /locus_tag="U1396_001963"
     tRNA            711..783
                     /locus_tag="U1396_001963"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:744..746,aa:His,seq:gtg)
     gene            795..866
                     /locus_tag="U1396_001964"
     tRNA            795..866
                     /locus_tag="U1396_001964"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:827..829,aa:Gln,seq:ttg)
     gene            878..961
                     /locus_tag="U1396_001965"
     tRNA            878..961
                     /locus_tag="U1396_001965"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:912..914,aa:Leu,seq:caa)
     gene            1094..>1589
                     /locus_tag="U1396_001966"
     CDS             1094..>1589
                     /locus_tag="U1396_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2971 domain-containing protein"
                     /protein_id="HEM5343095.1"
                     /translation="MKTLYHYTTVETLLLILNYKTLRFKSLLYVDDPLEPSTSDFGNL
                     GGFKYVSCWTDTPNSIPQWTMYSDNMTGVCIGISFDKETDVFLTEKFSLSESSEPIDM
                     VNALHPLKSGLLVTNNKYVPSLEQIRYTDDVSLITPRVVSSDDKFTTINLASNGIYKT
                     TDWSF"
BASE COUNT          417 a          317 c          367 g          488 t
ORIGIN      
        1 aagcgggtgt agtttagtgg taaaactaca gccttccaag ctgttgtcgc gagttcgatt
       61 ctcgtcaccc gctttgaaca tagttcatac ccaaacttgg tttgggcgcg tagctcagat
      121 ggttagagcg cacgcctgat aagcgtgagg tcggtggttc gattccactc gtgcccatta
      181 tatggtccgt tggtcaaggg gttaagacac cgccttttca cggcggtaac acgggttcga
      241 atcccgtacg gactatatta ttcggaggat tacccaagtc cggctgaagg gaacggtctt
      301 gaaaaccgtc aggcgtgtaa aagcgtgcgt gggttcgaat cccacatcct ccttactatt
      361 atcgcgggat ggagcagcta ggtagctcgt cgggctcata acccgaaggt cgtaggttca
      421 aatcctgctc ccgcaatttc tttaagaatt tggctcggta gctcagttgg tagagcaatg
      481 gattgaagct ccatgtgtcg gcggttcgat tccgtctcgc gccattaatt taatattata
      541 tttcggagag atagcgaaga ggctaaacgc ggcggactgt aaatccgctc cttcgggttc
      601 gggggttcga atccctctct ctccatacct ttacgggcat agtttaaagg tagaactaag
      661 gtctccaaaa ccttcagtgt gggttcaatt cctactgccc gtgttatatg gcgggtgtgg
      721 tgaagtggtt aacacatcag attgtggctc tgacattcgg gggttcgatt cccctcactc
      781 gcctatttta atattggggt atcgccaagc ggtaaggcaa gggactttga ctccctcatg
      841 cgttggttcg aatccagcta ccccagttca actatatgcc ggcgtggcgg aattggcaga
      901 cgcgctggac tcaaaatcca gtgtccgcaa ggacgtgccg gttcgacccc ggccgccggt
      961 atagtttaaa agacaaggtt tctaagcctt gtctttttgt tttgaggtta taaaattttc
     1021 agttgagtta ctaaaaatta cttaatgttt tgttgtataa tatgttatat aagcaagagg
     1081 aggagccgtt aatatgaaga cactttatca ttatacaaca gttgaaacat tgcttctgat
     1141 attaaattat aaaacattga gattcaaaag tttactttat gttgacgatc cattagaacc
     1201 ttcaacttca gactttggta atctaggtgg atttaagtat gtgtcttgtt ggactgatac
     1261 tcctaatagt attccacaat ggacaatgta ttctgataat atgacaggag tgtgtatagg
     1321 aattagtttt gacaaagaaa ctgatgtctt tttaacggaa aaattttctt tatctgaatc
     1381 ttctgaacca attgatatgg taaatgcatt acatccttta aaatcaggct tattagttac
     1441 aaataataaa tatgtgcctt ctttggaaca aataaggtat actgatgatg tttcattgat
     1501 cactcctcga gtagtttctt cagatgataa attcacaact attaatttag cttcaaatgg
     1561 tatctataag acaactgatt ggagttttc
//
LOCUS       DASGBY010000198         1557 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.199, whole genome shotgun sequence.
ACCESSION   DASGBY010000198 DASGBY010000000
VERSION     DASGBY010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.199"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..738)
                     /locus_tag="U1396_001967"
     CDS             complement(<1..738)
                     /locus_tag="U1396_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3307 domain-containing protein"
                     /protein_id="HEM5343096.1"
                     /translation="MSFSVISSYLIQHPVLTALLIAHFLSDFTFQSQALADAKKLHLK
                     ALFMHLFIVSLPLLILALLTPVQNGDLFFQVWLSHLAIDYVKYFLNKHHWIKDSWEAG
                     AFLADQLLHVISIIILYHTIGVNVASHSLWIEPNYLLLQILFILLISKPVNILFKLYF
                     SKYQVAEGEEEQTVTGAGALIGQLECLIMGIFLLLGQYTAIGLVFTAKSIARYDKISK
                     SQAFAEYYLIGSLFSIISVLVLYVLLIL"
     gene            complement(742..1410)
                     /locus_tag="U1396_001968"
     CDS             complement(742..1410)
                     /locus_tag="U1396_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SatD family protein"
                     /protein_id="HEM5343097.1"
                     /translation="MNYIAIIGDIVNSKQTSNRSSIQERLKQQLNRINHSFAQDFASP
                     FTITKGDEFQALCKPNPYIFLIIDQIQLAFRDEVEIRFGIGLGEILTAIDPKLSIGAD
                     GPAYWEARKAIDFIHDNHDYGTSKIAFSSEYKQIDRVINPLLTSSDFIKAAWNRSQTD
                     LFETLISKKIYQEDFTQKPIAEKMKLSQSAFTKRLKSSGIKLYLRNRQTAMNLILQLS
                     QKEG"
BASE COUNT          482 a          267 c          332 g          476 t
ORIGIN      
        1 taaaatcagt aaaacgtaca atactaggac actaatgata ctaaatagcg aaccaattaa
       61 atagtattca gcaaaggctt ggcttttgga tattttatca tagcgtgcga tggattttgc
      121 tgtaaatacc agcccgatag ctgtgtattg ccctagaagt agaaaaatcc ccataatcaa
      181 gcattctaat tggccaatca aggctcctgc acctgtcaca gtctgctctt cttctccttc
      241 cgctacctga tatttgctaa agtagagttt gaaaagaata ttgacgggct tgctgatcag
      301 aaggataaaa aggatttgca ggaggagata atttggttca atccagagtg agtgtgaagc
      361 aacattgaca ccgatagtgt gataaagaat gatgatagag atgacatgta gcaattgatc
      421 agctaggaat gctccagctt cccaggagtc ctttatccaa tggtgtttgt tgagaaaata
      481 tttgacatag tcaatcgcaa gatggctcag ccaaacttga aaaaataaat ctccgttttg
      541 aacgggggta agtaaggcta gaataagaag agggagagaa acaatgaaaa ggtgcatgaa
      601 aagagctttc aaatgcagtt ttttagcatc cgccagtgct tgactttgga aggtaaaatc
      661 acttaaaaag tgggcaataa gcaaggcggt taaaactgga tgttgaataa gatagctaga
      721 aataactgaa aatgacatgc tttatccttc tttctgactg agctggagaa tcaaattcat
      781 ggcagtttga cgattacgca ggtagagttt gattccgctg gatttcaaac gtttggtaaa
      841 ggcgctttga ctgagtttca ttttctcagc aattggcttt tgtgtgaaat cttcttgata
      901 gatttttttg gagattaagg tctcaaacag atccgtttgc gaacgattcc aggcagcttt
      961 gatgaaatcg ctagaagtta gcaaggggtt aatcacacga tcgatttgct tgtattcaga
     1021 tgaaaatgca attttgctgg tgccatagtc atggttgtca tgaatgaagt caatagcctt
     1081 gcgtgcttcc caataagctg gaccatctgc tccaatactt agcttgggat cgatagctgt
     1141 tagaatctca cccaaaccaa ttccaaatcg aatctccacc tcatcacgga aggctagttg
     1201 gatttggtca attattaaaa aaatataagg gttaggcttg cataaggctt gaaattcatc
     1261 tccctttgta atggtaaatg gtgatgcgaa gtcctgagcg aaggaatgat tgattctatt
     1321 cagctgctgt tttagccgct cttgaatact agagcggttg gaagtttgtt ttgaattgac
     1381 aatatctcct attattgcga tataattcat aacttgtcct ctgattccta ttatatttcc
     1441 attataacgg acaatataaa gattgtccac taaaaaggac atttttgaat atttccgtta
     1501 taacggaaaa tgttggggtt caaaaatcat ttttcctgct ttgctacttc tatttta
//
LOCUS       DASGBY010000199         1501 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.200, whole genome shotgun sequence.
ACCESSION   DASGBY010000199 DASGBY010000000
VERSION     DASGBY010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.200"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            23..1396
                     /gene="dnaA"
                     /locus_tag="U1396_001969"
     CDS             23..1396
                     /gene="dnaA"
                     /locus_tag="U1396_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEM5343098.1"
                     /translation="MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIF
                     LNRPFKKDFWEKNFEELMIAASFEIYGEPLAIQYQFTEDEQEIRNTTNTRSSIVHQVQ
                     TLEPATPQETFKPVHSGIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELYNPLFIFG
                     GPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLD
                     LLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKW
                     GLTSEITPPDFETRIAILRNKCENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI
                     ATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQ
                     HIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEIT
                     SIKNKLR"
BASE COUNT          514 a          285 c          267 g          435 t
ORIGIN      
        1 tataatgtga aagggggaaa atatgaacca agaacaactt ttttggcaac gatttattga
       61 attggcaaag gtaaatttta agccatctat ttatgatttt tatgtcgctg atgcaaaatt
      121 actcggaatc aaccagcaag ttgccaatat tttcttaaat cgtccattta aaaaagattt
      181 ctgggaaaaa aacttcgaag agttaatgat tgccgctagt tttgaaatct acggagagcc
      241 tcttgccatc caatatcaat ttacagagga tgaacaggag attaggaata ctacaaacac
      301 aagaagttca atagttcacc aggtacagac acttgagccg gctactcctc aagaaacttt
      361 taaaccggtt cattctggta taaaatccca gtacaccttt gctaattttg tacaaggaga
      421 caataatcac tgggcaaagg ctgcagcttt agctgtatct gataacctag gtgagctcta
      481 caatccatta ttcatttttg gtggtcctgg tcttggaaaa actcatattt taaatgcgat
      541 tggaaataag gttctagccg ataatcccca ggcaaggata aaatatgtct catcggaaac
      601 attcatcaat gaatttttag aacacctccg tctcaatgat atggaaagtt tcaaaaaaac
      661 ctatcgcaat ctggacttac ttctaattga tgacattcag tctctccgta ataaagcaac
      721 aacacaggaa gaatttttcc atacttttaa tgcgcttcat gaaaaaaata agcagattgt
      781 actcacaagc gaccgtaatc ccgatcactt agacaatttg gaagaaagac tagtaacacg
      841 tttcaaatgg gggttaacca gtgaaatcac tccacctgat tttgaaacac gtatcgcaat
      901 tttacgtaac aagtgcgaga acctgcctta caactttaca aatgagacgc tatcctatct
      961 agctgggcaa tttgattcga acgtacgtga ccttgaaggt gccttaaaag atatccattt
     1021 gatagccact atgcgtcaac tgtctgagat aagtgtcgag gttgctgctg aggctattcg
     1081 atcaagaaaa caaacaaatc cacaaaatat ggttattcct attgagaaaa tccaaaccga
     1141 agtgggaaat ttctacggtg tcagcttgaa agaattaaaa ggttctaagc gtgttcaaca
     1201 tatcgttcac gcgcgacaag ttgctatgtt tttagcacgt gaaatgacag acaattccct
     1261 tccaaaaatt gggaaagaat ttggtaatcg agaccataca accgttatgc atgcatacaa
     1321 taaaataaaa actctcctct tggatgatga gaatttagaa atagagatta ccagtataaa
     1381 aaataaactt cgttaacctg tgtataactt ttttaaaaaa ctctgttttt tccacaagtt
     1441 gtgaacaagt taatttccgc agttttattg gtctttcatc acttttccac agaatacaca
     1501 g
//
LOCUS       DASGBY010000200         1493 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.201, whole genome shotgun sequence.
ACCESSION   DASGBY010000200 DASGBY010000000
VERSION     DASGBY010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.201"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            4..762
                     /locus_tag="U1396_001970"
     CDS             4..762
                     /locus_tag="U1396_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5343099.1"
                     /translation="MKSNKEQKYFWLTFSLIVALMIWWFLSNYDRTSRSFPNIILVWN
                     ALLIMIDKGFIFEDIFSSLTSVFFGFTSGFLLSVPNALFMSWYSPYRNIVYPWIQYIR
                     NIPPLAYVPLVVISAGVGLLPQVIVIAIATFLTMTVTIYQGIINIDPNLIKAARILGA
                     SDFEIFKRILVPASIPFIMTAVRLGTSISLTTIIAAESTGATSGMGMRIRSLNNSFDS
                     SGMLLYIILIGVIGLLLNKLVDLIERKLTGWQQK"
     gene            747..>1493
                     /locus_tag="U1396_001971"
     CDS             747..>1493
                     /locus_tag="U1396_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5343100.1"
                     /translation="MATEVKKIKVKIEEVSKSFQSIHGEVVALNQINLEIFENEIVTV
                     VGPSGCGKSTLLNLVAGLEPVTSGKIYCDDNEIVGVGVERGVVFQQYALFPWMSVQQN
                     VMFGPEMQGKSKLEASEIANKYIKMVGLQEFSNHYPKELSGGMKQRVAIARAYAVNPT
                     ILLMDEPFGALDAQTRIQLQDELIEMLEHERKTCLFITHDIEEAILLGNRVIIMSSRP
                     GEIKEIVNVDLPFPRSQSIKFENDFIDIKNH"
BASE COUNT          484 a          208 c          298 g          503 t
ORIGIN      
        1 aagatgaaga gcaacaaaga acaaaaatat ttttggttga cattctcatt gattgttgca
       61 ttgatgattt ggtggttttt atcgaattat gatcgaacct ctcgtagttt tccaaatatc
      121 attttggttt ggaatgcttt attaatcatg atagacaaag ggtttatctt tgaagatata
      181 ttttcaagtc taacttcagt tttcttcggg ttcacgtcgg gctttctatt gtcggtgcct
      241 aatgcattgt ttatgtcctg gtattctcca tatcgtaaca ttgtatatcc ttggatacaa
      301 tatatcagaa atatcccacc acttgcgtat gttcctttag tagtaatttc ggctggggtc
      361 gggctgttac ctcaagttat tgtaatagcg atagctactt ttctgactat gactgtaaca
      421 atttatcaag gcattattaa tattgatcca aatttaatta aagcagcaag aattttaggt
      481 gcatcagatt ttgaaatatt taaaagaatt ttggttccag catccattcc atttattatg
      541 acagctgtca gattaggtac atcgatttct ttaactacaa tcattgcagc tgaatctact
      601 ggtgctacat caggtatggg aatgagaata cggtctttaa ataactcttt tgattcctca
      661 ggaatgcttt tgtatatcat attgattgga gtaattggtt tactgttaaa taagttagtt
      721 gatttgatag aaaggaagtt aactggatgg caacagaagt aaaaaaaatt aaggtcaaaa
      781 ttgaagaagt ttcaaaatca tttcagtcaa ttcatggtga ggttgttgca ctaaatcaaa
      841 taaatttaga aatctttgag aatgaaattg ttacagttgt tggtccatca ggttgtggta
      901 aatctactct actaaacttg gttgcaggtt tggaacctgt aacttccggg aaaatttatt
      961 gtgatgataa tgaaattgtt ggcgttggag ttgagcgtgg tgttgttttt caacaatatg
     1021 cactatttcc ttggatgagt gtacaacaga atgtaatgtt cggacctgaa atgcaaggaa
     1081 aatcaaagtt agaagctagc gaaatagcta acaagtatat taaaatggtt ggattacaag
     1141 aattttccaa tcattatccg aaagaattat cgggaggaat gaagcaaaga gttgcaatag
     1201 caagagcgta tgctgttaat ccgacgattc tattaatgga tgaaccattt ggagccttag
     1261 atgcccaaac gaggattcaa ctgcaagatg aattgattga aatgctggaa catgaacgaa
     1321 aaacatgttt gtttatcaca catgatattg aggaagcaat acttctagga aatcgagtaa
     1381 ttattatgag ttcaaggccg ggagaaatta aagaaattgt gaatgttgat ttaccgtttc
     1441 caagaagtca atccataaaa tttgaaaatg attttataga tattaagaac cac
//
LOCUS       DASGBY010000201         1458 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.202, whole genome shotgun sequence.
ACCESSION   DASGBY010000201 DASGBY010000000
VERSION     DASGBY010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.202"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            95..>1458
                     /locus_tag="U1396_001972"
     CDS             95..>1458
                     /locus_tag="U1396_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM5343101.1"
                     /translation="MTLKAKTDGVESDLGGSIVSENGVLSGSNGTKINLKITTNPGYR
                     FVGYQSFLENGNSTDGLLPIENDSFEISDKTGNVTVIAIFESVPVDESIYFSDDFSVE
                     NINNYVISENLVGKIGISDGKMNLHAPGISSIKPILTKPIEDNATSGYEIGFTLQQIG
                     EVKPWNTFRIVFKEDHDGFIYALEFSGQAAFLKKLSSIDAPLQSGEKYAETSHILGSE
                     EHKVRLVVKGNSVTVSDNGIPLLSYNSPNNWNDAQASIVFSPVSNRSVSLDDIIVRRT
                     QTLRPFRVVSRLDGQEVSGVLPGSIKGTTSQVFVGDSLNLEVIEKSGYQFIGFKDSAG
                     NFLDLTTFVVPNEESELVLYADFESVDVVIREPKTFYIDSLGGNDSNNGETENSAWKS
                     FEQLRKKSFVAGDRILIKRGSRFVGESAFLTFKGSGSQNTPILISSYGEGELPLLEGQ
                     GKIE"
BASE COUNT          494 a          194 c          302 g          468 t
ORIGIN      
        1 tgttacttgt tttactggtt ctgttgatgc tttagataat agtagagtga tagcgatacc
       61 aagcgaaatc gtaaacagcg aaaacgcata caacattact ttaaaagcga aaactgatgg
      121 agttgaaagt gatcttggag gaagtattgt ttctgaaaat ggtgtcttat caggttctaa
      181 tggtactaaa ataaatttga agataaccac aaatcctggt tatcgatttg taggttatca
      241 atcattttta gaaaatggaa atagtacgga tggattgcta cctatcgaaa atgatagttt
      301 tgaaatttca gataaaacag gcaatgtgac cgtaatagca atatttgagt cagttccagt
      361 tgatgaatca atatatttta gtgatgattt ttcagttgaa aatattaata attatgtgat
      421 atctgaaaac ctggtaggaa aaattggaat tagtgatggg aaaatgaatc ttcacgctcc
      481 aggtatctct tcgatcaaac caattttaac aaaaccaatc gaagataatg caacttctgg
      541 atatgaaatt gggtttacat tacaacaaat tggtgaagta aagccatgga atacttttag
      601 aatagtattt aaagaagatc atgatgggtt catttatgct ttagaatttt caggacaagc
      661 tgctttttta aaaaaacttt ctagtataga tgcaccactt caatctggcg aaaaatatgc
      721 tgaaacaagt catattttag gaagtgaaga gcataaagta cgacttgtag tcaaaggtaa
      781 ttcagtaaca gttagtgata atggaatacc attattaagt tacaacagcc caaacaattg
      841 gaatgatgcc caagcatcta ttgttttttc accagtttca aatcggagtg tttctctaga
      901 tgatattatt gttcgaagaa ctcaaacctt aagacctttc cgggtcgttt ctcgattaga
      961 tggtcaggag gtatctggag ttctgcctgg ttcaattaaa ggaaccacaa gtcaagtttt
     1021 tgttggagat tcacttaatt tagaggtcat tgaaaaatct gggtaccaat ttattggttt
     1081 taaagatagt gctggtaatt ttcttgattt aactactttc gttgttccaa atgaggagtc
     1141 agagttagtg ctgtatgccg attttgagtc agtggatgta gtgattcgtg aaccaaagac
     1201 tttctacatt gatagtctag gaggaaatga ttctaataac ggggaaaccg aaaatagtgc
     1261 atggaaatca tttgaacaat taaggaaaaa gtcgtttgta gctggagata gaatattaat
     1321 aaaacgtgga agtcggtttg ttggagaaag tgcttttctt acatttaaag gttcgggtag
     1381 tcaaaatact ccaattctaa tttcatccta tggtgaaggt gagttacctt tattagaagg
     1441 gcaagggaaa attgaaaa
//
LOCUS       DASGBY010000202         1452 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.203, whole genome shotgun sequence.
ACCESSION   DASGBY010000202 DASGBY010000000
VERSION     DASGBY010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.203"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            35..313
                     /locus_tag="U1396_001973"
     CDS             35..313
                     /locus_tag="U1396_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5343102.1"
                     /translation="MGLSETLKAISAPIRRQILDSLKSGPKSAGEIVEQFQLTGATVS
                     HHLSTLKKAGLILEEKQKNFIYYRLNYTVFEEVLVWIASFGGQQDEEN"
     gene            300..902
                     /locus_tag="U1396_001974"
     CDS             300..902
                     /locus_tag="U1396_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEM5343103.1"
                     /translation="MKKIDIKTLFATSSIFLLIALLTIYYYGALPDTMVTHFGVNGEP
                     NGSMPKYMVTILTPLLFFCVHLFICILYDVKGIGKTPVIRVFKWLFPLLALIIQVSLL
                     WYNLGGELDYRRLVIGLLAVYYMVIGNYLPKEELDSKTNEIERKGRKQSGYLLMIGGL
                     LQLVSLLGSPTLSILVMILVGISVVSLSIYYAYLHFKTAS"
     gene            1014..1421
                     /locus_tag="U1396_001975"
     CDS             1014..1421
                     /locus_tag="U1396_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5343104.1"
                     /translation="MITYKQNPQLDFQAVLEIYDSVGWTNYTDRPTMLQKALEHSLLV
                     LAAFDGDRLVGLLRAVGDGHSIVFIQDILVLPTYQRQGIVRQLLEQAIAYFPGIYQLH
                     LLTDNTEKTRSFYEAIGFTAVDSLDSVAYTYLK"
BASE COUNT          425 a          254 c          313 g          460 t
ORIGIN      
        1 aatatttcta aatagatgga caaggaggct tattatggga ttgtctgaaa ccttgaaggc
       61 aatttctgct cctattcgta ggcaaattct agatagtctt aagtcggggc cgaagtctgc
      121 tggggaaatt gtagaacaat ttcaattaac aggagcaaca gtttctcatc atttatccac
      181 tttgaaaaaa gctggattaa ttttggagga aaagcagaaa aattttattt attatcgtct
      241 aaactatacg gtctttgaag aagtcttggt ttggattgca agttttggag ggcaacaaga
      301 tgaagaaaat tgacataaaa accttatttg caacttctag tatattccta ctgattgctt
      361 tattgacgat ttattactat ggagcattgc cagataccat ggtaacgcat tttggcgtaa
      421 atggtgagcc aaatggctct atgcccaagt atatggtgac aattttgaca ccgctactat
      481 tcttttgtgt tcacctattc atttgtatac tttatgatgt gaaagggata gggaaaacac
      541 cggtcattcg agtgttcaaa tggctttttc cgctactggc tctcatcatt caagtttctt
      601 tactctggta taatttagga ggagaattgg attaccgtag gcttgtcatt ggactgctgg
      661 ctgtctatta tatggtgata ggaaattatt tacccaagga ggaattggat agcaagacca
      721 atgaaataga acgaaaggga agaaagcagt caggctatct cttgatgatt ggtgggttgt
      781 tgcagttagt aagtttgttg ggttcaccaa ccctatctat ccttgtaatg atattggttg
      841 gtatttctgt tgtaagtctt agtatctatt atgcttatct gcattttaaa accgcttcat
      901 aattggagca gtttttgtta tactaaatgt agtaaaacag gaggtaagac catgggcgtt
      961 ttaacaatgg acaaagcctt tgtattctaa aaaacaatac aaaggagaaa gacatgatta
     1021 cttacaaaca aaatcctcaa ctcgactttc aagcagtcct tgaaatctat gattcagttg
     1081 gttggacaaa ttatactgac cggcctacca tgttacagaa ggccttggaa catagtctgc
     1141 tcgttcttgc tgcctttgac ggtgaccgtc tagtgggtct cttgcgagca gttggcgacg
     1201 ggcattcaat cgtttttatt caggacatct tggtcctacc aacctatcag cgacaaggaa
     1261 ttgtgcgtca gcttttggag caggccattg cctactttcc aggtatttat caactccatc
     1321 tcttgacgga caatactgag aaaacacggt ctttctatga ggcaattggc tttacagccg
     1381 ttgatagcct ggacagtgtc gcttacacct atttaaaata ataaaacaat ctaaaaaagc
     1441 agaggctggg ag
//
LOCUS       DASGBY010000203         1437 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.204, whole genome shotgun sequence.
ACCESSION   DASGBY010000203 DASGBY010000000
VERSION     DASGBY010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1437
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.204"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..1397
                     /locus_tag="U1396_001976"
     CDS             <1..1397
                     /locus_tag="U1396_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5343105.1"
                     /translation="LLPSRTFYSSYDFKWPKRFSRILLGYITLITIVPMINKTVVSNA
                     NISLNYWRMYVTYGQFGLPLSLASFYEDSKITKPEGYSVPKLNEVLEKYPPETEKQTI
                     RPNIIFIQNESQSDFSNLQGLNMEPDPLSNQHALTDNTIHGTLNVSVFGGGTANTEYE
                     VLTSNPISLLSSNLFPYQQIITQERPSFATYLKNKNYDTVALHPQSGNNYNRNAVYPL
                     LGFNKSYFLDSEPAISSLAPLTIDRGWPSDQFLFNGIKELYTQKGDQPLFSFVVTMQG
                     HGGYPSTEEIYPREVSINGSTSEYLAETEFLTSMKRTDEAFADLITFFSTYKEPTVIV
                     MYGDHQPSLTQEFYAQFMDENNPAAKYSTPLVIWSNFDIRERESTTISPNYLVPYLMD
                     ILSESDYALPRSPYQQFLSDMQIEAPIITSWGNIDNNGQQIEDLSTLPLYQTYLQLEY
                     NSAIDKQPLTDLYE"
BASE COUNT          480 a          306 c          225 g          426 t
ORIGIN      
        1 aacttctacc ttctagaacg ttttattcta gttatgattt caaatggccg aaacgtttca
       61 gcagaatttt attgggctat ataactttaa taacaatcgt tccaatgatt aataaaactg
      121 tcgtctctaa tgcaaatata tcattaaact actggagaat gtacgtcacc tatggtcaat
      181 ttgggctacc actctcactc gcctctttct atgaagatag taaaataact aagcctgaag
      241 gatattcagt tcccaaactt aatgaagttc ttgagaagta ccctcctgaa acagaaaaac
      301 aaacaatcag acctaatatt atctttatac agaatgaatc acagagtgat ttttcaaact
      361 tacagggctt aaatatggag cctgatccgc tatcaaacca acatgcatta acagacaata
      421 ctattcatgg caccctcaat gtctcagtct ttggcggtgg tactgcaaat accgagtatg
      481 aagtgctgac aagtaaccca atcagtttat tatcttctaa tttattccca tatcagcaga
      541 ttatcacaca agaacgtcca agtttcgcaa cttatctaaa aaataaaaat tacgacactg
      601 tagctctaca tcctcaatcc ggaaataatt acaaccgcaa tgcagtgtat cctctactgg
      661 ggtttaataa atcttatttt ttagattcgg aacctgctat tagtagctta gcaccactaa
      721 caatcgatcg tggctggcca tctgatcaat tcttgttcaa cggaataaaa gaactttata
      781 cccaaaaagg agaccagcct ctatttagct ttgttgttac catgcaagga catggaggct
      841 atccaagtac ggaagaaatt tatcctcgcg aagtcagcat taatggttca acatctgaat
      901 acttagctga aacagaattt ttgaccagca tgaaaagaac agatgaagca tttgcagatt
      961 taattacttt ctttagcact tacaaagagc caacagtcat cgtcatgtac ggcgatcacc
     1021 aacctagttt gactcaggaa ttttacgcac aatttatgga tgaaaataat cctgccgcta
     1081 aatattctac ccctttagtg atttggtcga attttgatat tagggagcgc gaatctacaa
     1141 caatcagccc aaactatctc gttccatatt tgatggatat tttatccgaa tccgactatg
     1201 cccttcctcg atcaccttac caacaatttt tgagtgatat gcaaatcgaa gcacctatca
     1261 ttactagctg gggaaatatc gataataatg gccaacaaat tgaagaccta tcaaccctac
     1321 cactttacca aacctactta caactagaat acaatagtgc cattgacaaa caacctttaa
     1381 cagatttata tgagtgataa aaatagcctt gctcggtttt gagcaaggct attttat
//
LOCUS       DASGBY010000204         1435 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.205, whole genome shotgun sequence.
ACCESSION   DASGBY010000204 DASGBY010000000
VERSION     DASGBY010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.205"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            17..415
                     /locus_tag="U1396_001977"
     CDS             17..415
                     /locus_tag="U1396_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343106.1"
                     /translation="MTEETLAQGILIGIWGTTLLFSFIWYILVAISNYILFKKAGYAG
                     WKSLIPIYNLYIQQCIAFGYEKRWFILFLLIPLAGPLYGIYLVYNFGRSFGLSAVQAI
                     FYVLLTPILNLYIAFNDGSRYQGPQEFFID"
     gene            complement(451..1365)
                     /locus_tag="U1396_001978"
     CDS             complement(451..1365)
                     /locus_tag="U1396_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEM5343107.1"
                     /translation="MNELELLARALGFIFVIGLGYTLKVKGIVRREDARIFSSLVMNI
                     TLPASLLVASATAQVSIDLYVPFILGILCNLFLDMVGYWEAKKSGQQTSVGLMQLSGY
                     NIGTFTLPFVQAFFPLSSLLSVIVFDAGNAIMVLGGNYSIAAGVDEEQERMTVATFIK
                     NLSRSVPLVVYLVSLSLAVCSIKLPRELISALTIASNANPFLAMLMLGILLDLKLNWQ
                     EISRLVYLLSLRLGANILIAGVIYFLLPIDKTMKIMLLVCLVSPISVMSPIYALKLGS
                     RSAEPANVNSLSILVSLVMMVLLIFLFV"
BASE COUNT          474 a          290 c          261 g          410 t
ORIGIN      
        1 aaatggagtt tttattatga cagaagaaac attagcacag ggaattctca ttggcatttg
       61 gggtacaaca ctactatttt catttatttg gtatatcctt gttgctattt ccaactacat
      121 cctcttcaaa aaagcaggct acgctggttg gaaatcattg attccaatct acaatctcta
      181 tatccaacaa tgcatcgcct ttggctatga aaaaagatgg ttcattctat tcttactgat
      241 tccgctagca ggaccattat atggcatcta tctcgtttac aattttggtc gtagcttcgg
      301 tttatcagct gtacaagcta tcttctatgt tcttcttaca cctatcttga acctctacat
      361 cgcctttaat gatggaagtc gttaccaagg tccacaagaa ttctttattg attaatatac
      421 aatcaagccc ccgcacacgc ggaggctttt ttaaacgaat agaaaaataa gaagaaccat
      481 catgactagg ctaaccaaaa tagataagga gttaacattg gcaggttcag ctgagcgact
      541 ccctaacttt aatgcataaa ttggggacat gactgaaatc ggagagacta gacagaccag
      601 caacatgatt ttcatcgttt tatcaatagg tagaagaaaa taaatgactc ctgctattag
      661 aatattcgca cccagcctca aagagagaag atagaccaat cgactaattt cttgccaatt
      721 caattttaaa tcaagcaaga ttcctaacat gagcatggct aaaaaaggat tggcgttact
      781 ggctatcgtc agcgcagaga taagttcgcg tggtagtttg atagagcaga ctgctaacga
      841 taggctaact agatagacta ctagtggaac tgagcgtgaa agattcttta taaaagttgc
      901 aacggtcatt ctttcctgct cttcatccac accagctgcg atactgtaat tcccacctag
      961 aaccatgatt gcattccccg catcaaatac gatgacgctt agtagactag atagcggaaa
     1021 aaaagcttgc acaaatggga gtgtaaaggt tccgatatta tagcccgata actgcataag
     1081 cccgacggaa gtctgttgac cagacttctt tgcttcccag tatcccacca tatccaaaaa
     1141 aagattacaa agaatcccta atatgaaggg aacgtataaa tctatagata cttgggctgt
     1201 cgctgaagct acaaggagag aagctggtag cgtaatattc atcactaagc tagaaaagat
     1261 tcttgcatct tcccttcgaa caatcccttt gacttttaat gtataaccta aaccgataac
     1321 aaagataaaa ccgagagcac gggctaataa ttcaagttca ttcatgaaac tagtatagca
     1381 tatagaaaag aattttgatg atatataaaa attttatata atcgcttgat tttgc
//
LOCUS       DASGBY010000205         1416 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.206, whole genome shotgun sequence.
ACCESSION   DASGBY010000205 DASGBY010000000
VERSION     DASGBY010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.206"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            90..1349
                     /locus_tag="U1396_001979"
     CDS             90..1349
                     /locus_tag="U1396_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5343108.1"
                     /translation="MKHNLLKSVALLAASTAVLAACSNSGSSTEASKSAEGSKELTVY
                     VDQGYESYINDVKAGFEKENGVSVTVKTGDALTGLDNLSLDNQSGSAPDVMMAPYDRV
                     GSLGSEGQLSELTLADDSKADDTTTALVTNGGKVYGSPAVIETLVLYYNKDLLTEAPK
                     TFAELETLAKDSKYAFAGEEGKTSAFLADWTNFYYTYGLLSGYGGYVFGENGTNPKDI
                     GLANEGAIKAIEYAKTWYEKWPQGLQDGTAANNLINTQFTDGKAAAIIEGPWKAASYK
                     EAGVNYGVATIPTLVNGKNYSAFGGGKAWVVPAGAKNQEMAQKFVDFLTATDQQKALY
                     DATNEVPANTEAREYAVSKKDELTTAVINQFASAQPMPNISEMGSVWTPAGNMLFEAA
                     SGSKDAKTAATDAVKAIADEIAQKHSN"
BASE COUNT          462 a          295 c          295 g          364 t
ORIGIN      
        1 ttcaatctgg tgtataatga agtcaactta ggaaaacgtt tgcgcaaagc aggcgtcaca
       61 caaaactatt tatcttcgga gggaagaaaa tgaaacacaa tctccttaag agcgttgctc
      121 ttcttgctgc atcaactgct gttttagctg catgctcaaa ctcaggttca tcaacagaag
      181 catctaagtc tgctgaaggt agcaaagaat tgactgtcta cgttgaccaa ggttatgaat
      241 cttacatcaa cgatgtcaaa gctggcttcg aaaaagaaaa tggtgtatct gttaccgtta
      301 aaactggtga tgctttaact ggtttggata acttatcatt ggataaccaa tcaggttcag
      361 ccccagacgt tatgatggca ccatacgacc gtgtaggtag ccttggttct gaaggtcaac
      421 tatctgaatt gacacttgca gatgatagca aagcagatga cacaacaact gctcttgtaa
      481 caaacggtgg taaagtttac ggttcacctg cggttatcga aacacttgtt ctttactaca
      541 acaaagactt gttgactgaa gctcctaaga catttgcaga acttgaaaca cttgctaaag
      601 acagcaaata cgcatttgct ggcgaagagg gtaaaacttc agcattccta gctgactgga
      661 cgaatttcta ctatacatac ggacttcttt ctggttacgg cggctatgta ttcggtgaaa
      721 atggtacaaa tccaaaagac atcggacttg ctaatgaagg tgccatcaaa gcaattgaat
      781 acgctaaaac ttggtacgaa aaatggcctc aaggtcttca agacggtact gctgcaaaca
      841 acttgattaa cactcaattt acagacggta aagcagctgc tatcatcgaa ggtccttgga
      901 aagcagcttc atataaagaa gctggtgtaa actatggtgt agcaacaata ccaactcttg
      961 taaacggcaa aaactactca gcattcggtg gtggtaaagc atgggttgtt ccagcaggcg
     1021 ctaaaaacca agaaatggct caaaagtttg ttgacttctt gactgctaca gaccaacaaa
     1081 aagcacttta cgacgctaca aacgaagttc cagctaacac tgaagctcgt gaatatgctg
     1141 taagcaaaaa agacgaattg acaactgcag ttatcaacca gtttgcttca gctcaaccaa
     1201 tgccaaacat ctcagaaatg ggttcagttt ggacaccagc tggtaacatg ctcttcgaag
     1261 ctgcaagtgg ttcaaaagac gctaagactg ctgcaacaga cgctgtgaaa gctattgcag
     1321 acgaaattgc tcaaaaacac agcaactagt caagtttaaa gttggactgg gagttctctt
     1381 cccagtctac tttattactt aacgataaac tgaata
//
LOCUS       DASGBY010000206         1408 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.207, whole genome shotgun sequence.
ACCESSION   DASGBY010000206 DASGBY010000000
VERSION     DASGBY010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.207"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(9..>1408)
                     /locus_tag="U1396_001980"
     CDS             complement(9..>1408)
                     /locus_tag="U1396_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEM5343109.1"
                     /translation="NLEITNLDPNFSTSFELNSNNNRTKSLRGLHVVAEDYGVVHDIN
                     IRNLYIHDINGNLSSKWNGGIFFDVYGTTIPTKYDGILIENNYLERVDRSGIKLVGST
                     WANQNLKNNKNVPLNWYPSTNVVVRGNRIEKAGGDSLTVRDTDGALIEYNISADARYQ
                     NTGYNAGIWPFQASNTVIQYNESFRTHGVQDGQGLDLDHISNNSVMQYNYSHDNEGGF
                     MLIMNWYEQTSPTVRYNISQNDKDKIFELARGGAQGTAIYNNTIYSDSKLTGRAGVID
                     MPSTSGGTGVKDIFLFNNIFYFVDGEKMLVEASDAGKYKDNIHFYNNAYVGVEVPNDP
                     RAITEGIELNGIGTGPIDNKSMIANTGKYLTGQLDGYKIPFNSVLANSGVSKEDAITY
                     FYEKLGIQQQIDFIENGSLNMSPIEAFSLARQTNSIDAIARSYPKIDGVNYDIDFFGE
                     SILTDNLSIGAAQVK"
BASE COUNT          443 a          278 c          187 g          500 t
ORIGIN      
        1 tgtttcactc atttaacttg agcagcacct atagataaat tgtctgttaa aatcgattct
       61 ccaaagaagt caatatcata gttaactcca tcaatttttg gatatgagcg agcgattgca
      121 tctatactat tcgtttgacg agctaaagaa aaggcttcta ttggggacat atttaacgac
      181 ccattttcaa taaaatcaat ttgttgctga atccctaatt tttcatagaa ataagtaatt
      241 gcatcttctt ttgatacgcc actatttgcc aatacactgt tgaaaggaat tttatacccg
      301 tctaattgac cagttaaata tttcccggta tttgcgatca ttgatttatt atcaattggt
      361 cccgtaccaa taccatttaa ttctatccct tcagtgattg ctctaggatc attaggcacc
      421 tcgacaccaa cataggcatt attataaaaa tgaatattat ctttatattt acctgcatca
      481 cttgcttcaa caagcatttt ctcaccatct acaaagtaaa aaatattatt aaataaaaag
      541 atatctttta ctcctgttcc acctgacgta cttggcatat caattacacc tgctcgtcca
      601 gttaatttcg aatcagagta gattgtatta ttgtaaattg cagttccttg tgctcctcct
      661 ctagccaatt caaaaatttt gtctttatca ttctggctga tattataacg aactgtagga
      721 gatgtttgtt cgtaccagtt catgattaac ataaacccac cttcattatc atgactgtag
      781 ttatattgca tcactgaatt attagaaata tgatctaaat ctaaaccctg accatcttga
      841 acaccatgcg ttctaaatga ttcattgtat tgaataactg tattcgaagc ttggaaaggc
      901 catatacctg cattgtaccc agtgttttgg tatctagcat cagcagaaat attgtattca
      961 atcaatgcac catcagtatc tctaacagtt agagaatcac cacctgcctt ctcaatacga
     1021 tttcctctaa caactacatt tgtagatgga taccaattta acggaacatt tttattattt
     1081 ttcaaatttt ggtttgccca tgttgatcca actaatttta ttcccgacct atcgaccctt
     1141 tctagataat tattttctat taatatacca tcgtatttgg taggtatagt tgtaccataa
     1201 acatcaaaga aaattcctcc attccatttc gaacttaaat taccatttat gtcatgtata
     1261 tatagatttc gaatatttat atcatgaacg accccataat cctcagcgac cacatgtagt
     1321 ccacgaagtg attttgtacg attattatta gaattcaatt caaaacttgt agaaaaattt
     1381 ggatccaaat ttgtaatctc aagatttt
//
LOCUS       DASGBY010000207         1279 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.208, whole genome shotgun sequence.
ACCESSION   DASGBY010000207 DASGBY010000000
VERSION     DASGBY010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.208"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..753
                     /locus_tag="U1396_001981"
     CDS             <1..753
                     /locus_tag="U1396_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM5343110.1"
                     /translation="SYKLTVNKKDHKYRTGTYTVHLYYKDSNGGLTGAGGTTTHLSNP
                     SAQRSYTVYIDPGHGGRDSGASYGGVHEKNLALSVSNKLRENLLQYGINVLMTRTGDY
                     DVDFKTERSRMTNASNADLFISIHFNATGAGVSNATGIETYWYQYNPEYQPKINKEMH
                     NNPTRLAESEILANKVQESLIKETGAVNRGVRRETFAVLRETAIPAILVELGFMDNPS
                     ELQVIKQDSYHTRLAKALAQGVMNWYGAVEGK"
     gene            831..1259
                     /locus_tag="U1396_001982"
     CDS             831..1259
                     /locus_tag="U1396_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM5343111.1"
                     /translation="MEQSSKANSILSSVMLSQAILESAWGTSYLATHGNNLFGIKADA
                     AWTGATIEIITNEYRDGEKKQEKHLFRKYNSWNESVADYAKFFTSTPWRIKNYQSFRE
                     ATDYQQAILALRQSGYATDPKYGEKLRSIIENYKLYLLDN"
BASE COUNT          427 a          221 c          279 g          352 t
ORIGIN      
        1 agttataagt taactgttaa taagaaggac cataagtacc gtacaggtac ctacacagtt
       61 catttatatt ataaggattc aaatggtggt ttgacaggtg caggtggaac aacaactcat
      121 ttatcaaatc cgtcggcaca gcgatcctac acagtctata ttgacccagg gcacggaggg
      181 cgagactcgg gtgcttctta cggtggcgta catgaaaaaa atcttgcatt gtctgtttca
      241 aataagttgc gtgaaaatct cttgcaatat ggaatcaatg ttttgatgac ccgtacaggt
      301 gattatgatg tagacttcaa aacagagagg tcacgaatga cgaatgcaag caacgcagac
      361 ttatttatta gtatccattt taatgcgacg ggtgcaggag tttcgaatgc gactggtatc
      421 gaaacatact ggtatcaata taatccagaa taccaaccta aaattaataa agaaatgcat
      481 aataacccta ctcgtttagc tgaaagtgag attttagcca acaaggtcca ggagagttta
      541 attaaagaaa caggtgcagt taaccgtggt gtaagaagag aaacttttgc agtccttcgc
      601 gagacagcaa ttcctgccat tctagtggag ctaggattta tggataatcc ttcggagttg
      661 caagttatca aacaagattc ttaccacact cgccttgcga aagcattggc acaaggtgta
      721 atgaattggt atggtgctgt tgagggaaag tagaaattgc aggtacaggt attgaaacag
      781 gaaaactttc taatgatcaa aaaagtttca tagccaatct agtacctgca attgaacaaa
      841 gttcaaaagc taattctatc ctttcgagcg tcatgttatc tcaagccatc ctcgaaagtg
      901 catggggaac gtcatacttg gcgactcatg ggaataatct ttttggcatc aaagcggatg
      961 ctgcgtggac aggtgctaca attgaaatca ttaccaatga ataccgtgat ggtgagaaga
     1021 agcaagaaaa gcacttgttt agaaaatata attcatggaa tgaaagtgta gcagactatg
     1081 ctaagttctt tacctctact ccgtggagaa taaaaaatta ccagagtttc agagaggcaa
     1141 ctgattatca acaagcgatt cttgcgctaa gacaatcagg atatgctact gatccgaaat
     1201 atggtgaaaa attacgatca attatcgaga attacaagct ttatctttta gataattaag
     1261 ttttttgggt gattgatga
//
LOCUS       DASGBY010000208         1241 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.209, whole genome shotgun sequence.
ACCESSION   DASGBY010000208 DASGBY010000000
VERSION     DASGBY010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.209"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..440
                     /gene="rlmH"
                     /locus_tag="U1396_001983"
     CDS             <1..440
                     /gene="rlmH"
                     /locus_tag="U1396_001983"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEM5343112.1"
                     /translation="YLKEGIAEYSKRLGRFTKLDMIELPDEKTPDKASQAENEQILKK
                     EADRIMSKIGERDFVIALAIEGKQFPSEEFSQKLSDIAVNGYSDITFIIGGSLGLDSC
                     IKKRANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYHK"
     gene            465..1148
                     /locus_tag="U1396_001984"
     CDS             465..1148
                     /locus_tag="U1396_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HEM5343113.1"
                     /translation="MNQKEYRVFEGLRIACSLTFISGYLNAFTFVTQGGRFAGVQSGN
                     VISLAYFLAKGDLAQVVNFSIPILFFVFGQFFTYLARRYFEKQTWSWHFGSSVMMLVL
                     ILLTIILSPIMPASFTIASLAFVASIQVETFRRLRGAPYANVMMTGNVKNAAYLWFKG
                     VIEKDSELRKTGRNILLTIIGFMLGVIISTHLSFQFEEYALIGLILPVLYINYELWQE
                     KRPTRGRSK"
     gene            complement(1146..1219)
                     /locus_tag="U1396_001985"
     tRNA            complement(1146..1219)
                     /locus_tag="U1396_001985"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1183..1185),aa:Arg,seq:tct)
BASE COUNT          385 a          195 c          248 g          413 t
ORIGIN      
        1 agtacctcaa agaaggtatt gcagaatata gtaaacgatt gggacgattt actaagttgg
       61 atatgattga gcttcctgat gaaaaaacac cagataaagc cagtcaggca gagaatgaac
      121 aaatattaaa aaaagaagcc gatagaatta tgtctaaaat tggagagcga gattttgtca
      181 ttgccttagc gatagaaggg aaacaatttc catcggaaga atttagtcaa aagctatctg
      241 atattgcagt aaatgggtat tcagatataa cttttatcat cggtggtagt ttgggtctcg
      301 attcttgtat taaaaaaaga gctaatttgt tgatgagttt tggacagttg acacttccac
      361 atcaattaat gaaattagtt ctcatcgagc agatttatcg tgcatttatg attcagcagg
      421 gaagcccata tcataagtag tttcacgtga aacaaggagt gaaaatgaat caaaaagagt
      481 atcgtgtttt tgagggattg agaattgctt gttcattaac gtttatcagt ggttatttaa
      541 atgcctttac ttttgtgact cagggtggtc gctttgctgg cgtacaatct ggaaatgtta
      601 tttccctagc ttatttttta gctaaaggtg accttgcgca ggtagttaat ttttccattc
      661 ccattttatt ttttgtattc ggacaatttt ttacctactt agcaagaagg tattttgaaa
      721 aacaaacatg gtcttggcac tttggtagta gtgtaatgat gttagttctt attttactaa
      781 ctatcattct ctcacctata atgcctgcgt cttttacaat tgctagtcta gccttcgtag
      841 cctctattca agtagaaaca tttagaaggt tacgaggtgc tccgtatgcc aatgtgatga
      901 tgacagggaa tgtcaaaaat gctgcttatc tctggtttaa aggagttatt gaaaaagatt
      961 cagaacttag aaaaacaggt agaaatatct tattaactat tatagggttt atgctaggtg
     1021 tcatcatatc tactcaccta tccttccaat ttgaagaata tgcccttatc ggtctgattt
     1081 tgccagtttt atatattaat tatgaattat ggcaagaaaa aagacctact cgaggtaggt
     1141 ctaaatgatt ccagcaggat tcgaacctgc gaccgttcgc ttagaaggcg aatgctctat
     1201 ccagctgagc tatggaacct caactatttt attttacatt a
//
LOCUS       DASGBY010000209         1236 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.210, whole genome shotgun sequence.
ACCESSION   DASGBY010000209 DASGBY010000000
VERSION     DASGBY010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.210"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            133..1158
                     /gene="adhP"
                     /locus_tag="U1396_001986"
     CDS             133..1158
                     /gene="adhP"
                     /locus_tag="U1396_001986"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HEM5343114.1"
                     /translation="MKAVVVNPESTGVVVVDKELRSLEAGEALVQIEYCGVCHTDLHV
                     ANGDFGKVPGRVLGHEGIGIVTEIAPGVTSLKVGDRVSVAWFFQGCGMCEYCTTGRET
                     LCRTVKNAGYSVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTCYKAIKEAHL
                     EPGQWIAIYGAGGLGNLAVQYAKKVFNAHVIAVDINNNKLELAKEVGADVTINGLEVE
                     DVPGYIKEITGGGVHSTVVTAVSKVAFNQAIDSVRAGGYVVAVGLPSEYMDLSIVKTV
                     LDGIKVVGSLVGTRKDLEEAFHFGAMGLVVPVVQKRPVEDAEAVFNEMVAGTIQGRMV
                     LDFCHSH"
BASE COUNT          330 a          247 c          281 g          378 t
ORIGIN      
        1 attttatatt catttgtccc tccttttcta ctcttgcatt tttgttcata ttgtgatatt
       61 cttaacaata taaaacaact atattaacac atccaaaaat gtatataaaa tattaaaaca
      121 ggaggtctgc ttatgaaagc agtcgttgta aatccagaat ctactggtgt tgtcgttgtc
      181 gataaggaac ttcgttcact cgaagctggt gaggctttgg tccaaattga gtactgtggt
      241 gtttgtcaca ctgacctcca cgttgccaat ggtgattttg gtaaggtccc tggtcgcgtt
      301 cttggtcacg aaggaatcgg tattgttaca gaaatcgcac ctggtgttac cagtctaaaa
      361 gttggtgacc gtgtcagcgt tgcttggttc ttccaaggct gtggtatgtg tgaatattgt
      421 acaaccggtc gcgaaactct ctgccgtacc gtaaaaaatg ccggctactc tgttgacggt
      481 ggtatggctg agcaatgtat tgtaacagcg gactatgcag taaaagttcc agaaggtctt
      541 gatccagctc aagcaagttc tatcacttgt gctggcgtta cttgctacaa agcgattaaa
      601 gaagctcact tggaaccagg tcaatggatt gctatctatg gtgctggtgg acttggaaac
      661 cttgctgtac aatacgctaa aaaagtcttc aacgctcatg ttatcgccgt agacatcaat
      721 aataataaat tggaactcgc caaagaagtt ggtgcagatg tgacgatcaa cggacttgaa
      781 gtagaagatg ttcctggata tattaaagaa attactggtg gcggtgtaca ctctactgtt
      841 gtaacagctg tttccaaagt agccttcaac caagctattg acagtgttcg tgctggtggc
      901 tatgtggtgg ctgtcggact tccatctgaa tacatggacc tcagtatcgt gaagactgtg
      961 ctagacggta tcaaagtggt cggctcacta gttggtactc gtaaagattt agaagaggcc
     1021 ttccacttcg gtgctatggg actagttgtt ccagtcgttc aaaaacgccc tgtcgaagat
     1081 gccgaagcag tcttcaatga aatggttgcc ggtactatcc aaggtcgtat ggtcttagac
     1141 ttctgccact cacactaatg cgttctccac tattttcaag aagtgattat ccaatcgctt
     1201 cttttttgct ttctaaaata aaaagaagca gcttta
//
LOCUS       DASGBY010000210         1210 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.211, whole genome shotgun sequence.
ACCESSION   DASGBY010000210 DASGBY010000000
VERSION     DASGBY010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.211"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..563
                     /locus_tag="U1396_001987"
     CDS             <1..563
                     /locus_tag="U1396_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HEM5343115.1"
                     /translation="NTFFERGVIGTGVQRDFNILFMPVFSMNILLILFRPMITQLAIY
                     RRAGDYNQFKQYQKRIVKMVVGLAVLVLVGGIVLGIPALNILYGTNLNKYWLSFIITM
                     LGGIASTFATICDNMLTVLRKQKYLVISFAISCLLSILISNPLVEYYGILGAAIAFVS
                     SMWTWFLISFVIYLKLQKHLNWEVQE"
     gene            560..>1210
                     /locus_tag="U1396_001988"
     CDS             560..>1210
                     /locus_tag="U1396_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HEM5343116.1"
                     /translation="MKIEKLFLRLAIPFLLISIFVMPVTKVPDEATHAFMSWNILFDS
                     PTSRDTEAMNELRAADFAYSEPEIHAVDSTEYSSLFTKIRDFSKDKLSIDFSLKSLMS
                     TPQLIGLVVGKLIYPSYGMMVTIGRLFNTIVYIIGIYYLIKKIKYGKMTLFFVSLLPM
                     MIQQAGSLSYDVVNYLAVVAFFVFYVNLLVDKVLTTRKFINLILLALLLYLTKANNI"
BASE COUNT          359 a          166 c          232 g          453 t
ORIGIN      
        1 tcaatacttt ttttgagaga ggtgttatag gaacaggtgt tcaaagagat tttaatattt
       61 tatttatgcc tgttttttca atgaatattt tgttgatttt gtttagaccc atgataactc
      121 agttggctat atatagaaga gctggggact ataatcaatt taaacaatat cagaagcgta
      181 tcgttaaaat ggttgtcgga ttggctgtgt tagttttggt tgggggaata gtattgggga
      241 ttccagcatt aaatattctc tacggaacga atcttaataa atactggctc agctttatta
      301 taacaatgct tgggggaatt gcgagtacct ttgcaaccat ttgtgataac atgcttactg
      361 ttttgaggaa gcaaaagtat ctcgtaattt catttgcaat ttcttgttta ttatccatat
      421 tgatttctaa tccactggta gaatattatg gaatattggg ggcagctatt gcttttgtta
      481 gttcgatgtg gacttggttt ttaatttctt tcgtaatata tctaaaattg caaaaacatt
      541 tgaattggga agtacaagaa tgaagataga aaaattattt ttaaggttag caatcccctt
      601 tttgttgatt tcaatatttg ttatgcctgt gacaaaggtt cctgatgaag caacacatgc
      661 ttttatgtcg tggaatatat tatttgattc tccgacaagt agagatactg aagcaatgaa
      721 tgaattacgg gcagcagatt ttgcgtattc agaaccggag attcatgcag ttgattctac
      781 agaatattca agccttttta ccaaaattcg tgatttttca aaggacaaat tatctatcga
      841 tttttctctg aaatcgttaa tgagtacacc tcagctaatt ggtctagttg taggtaaatt
      901 gatttatccg tcatatggta tgatggtcac tatagggcgc ctttttaata caatagtcta
      961 tattataggt atctactatt tgataaaaaa aataaagtat gggaagatga ccctgttttt
     1021 tgtctcactt ttacctatga tgattcagca ggctggctca ctgtcttatg atgtggtgaa
     1081 ctatctggct gttgttgcat tttttgtttt ttatgttaac ttattggtag acaaggtact
     1141 gaccaccagg aaatttatta acttaatatt actagccttg ctactatatt taacaaaagc
     1201 aaataatatt
//
LOCUS       DASGBY010000211         1151 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.212, whole genome shotgun sequence.
ACCESSION   DASGBY010000211 DASGBY010000000
VERSION     DASGBY010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.212"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            3..1109
                     /gene="ugpC"
                     /locus_tag="U1396_001989"
     CDS             3..1109
                     /gene="ugpC"
                     /locus_tag="U1396_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEM5343117.1"
                     /translation="MYKKYPNSEHYSVENFNLDIKDKEFIVFVGPSGCGKSTTLRMIA
                     GLEDITEGEAYIDGVLMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYSKD
                     EIKKRVEEAAQILGLTEFLQRKPADLSGGQRQRVAMGRAIVRDAKVFLMDEPLSNLDA
                     KLRVSMRTEIAKIHRRIGATTIYVTHDQTEAMTLADRIVIMSATKNEAGTGTIGRIEQ
                     IGSPEELYNKPVNKFVASFIGSPAMNFFTVTLQEGVLVGDGFKVDLPEGRRKHLEEKG
                     YNGKSFTLGIRPEDIKASQLELDTYPSSIVEAEVVVSELLGAETMLYSKVGNTEFVSR
                     VDARDYHNPGDKVRLTFNLNKAHFFDDETDQAIV"
BASE COUNT          351 a          235 c          247 g          318 t
ORIGIN      
        1 atatttataa aaaatatcca aatagcgagc attattccgt tgaaaacttt aatctagata
       61 ttaaagataa agagtttatt gttttcgtgg gcccatcagg atgcggtaaa tcaactactc
      121 ttcgtatgat tgctggattg gaagatatta cagaaggtga agcttacatc gacggtgtgt
      181 tgatgaacga tgtagcacca aaagaccgtg acattgccat ggtattccag aactatgccc
      241 tttacccaca catgactgta tttgacaaca tggcttttgg tctgaaattg cgtaaataca
      301 gcaaggatga aatcaaaaaa cgtgtagaag aagcagcaca aattctaggc ttgactgaat
      361 tcttgcaacg taaacctgct gacctttctg gtggtcaacg ccaacgtgtt gccatgggcc
      421 gtgccattgt ccgcgatgca aaagtattct tgatggatga gcctttgtca aacttggatg
      481 ccaaactgcg tgtatccatg cgtacagaga ttgctaaaat ccaccgtcgt attggtgcaa
      541 caacgatcta cgtaacgcac gaccaaacag aagccatgac cttggctgac cgtattgtta
      601 tcatgtctgc gactaagaat gaagcaggta caggtacaat cggtcgtatc gaacaaattg
      661 gtagcccaga agagctttac aataaacctg taaacaaatt tgttgccagc ttcatcggta
      721 gccctgcaat gaacttcttt acagtgactc ttcaagaggg cgtgcttgtt ggagatggtt
      781 tcaaagtaga tcttccagaa ggtcgtcgca agcatttgga agaaaaaggc tacaacggca
      841 aatcatttac attgggtatc cgtccggaag acatcaaagc ttcacaattg gagttggaca
      901 cttatccatc ttctatcgtg gaagcagaag ttgtcgtttc agagcttctt ggtgcggaaa
      961 ccatgctcta ttctaaagta gggaatacag aatttgtatc tcgtgtagat gcgcgtgatt
     1021 accacaatcc aggagacaag gttcgcttga ccttcaacct caacaaagct catttctttg
     1081 atgatgaaac agatcaagcc attgtttaat cttttataat ttgttcataa aacaccaaag
     1141 acccgctatt a
//
LOCUS       DASGBY010000212         1120 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.213, whole genome shotgun sequence.
ACCESSION   DASGBY010000212 DASGBY010000000
VERSION     DASGBY010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.213"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            46..>1120
                     /locus_tag="U1396_001990"
     CDS             46..>1120
                     /locus_tag="U1396_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5343118.1"
                     /translation="MEQLNLITNFLRIKDKNIVITDEYDMGTHLELHGHLDYTAPKCP
                     SCKGQMTKYDFQKASKIPYLETAGYPLLIRLRKRRFKCKDCGKIAVAETPLVKKNHQI
                     SVAVNQKIAQLLIENQAMTHIAHRLSISTSSVMRKLNEFKFETDWNTLPEVMSWDEYS
                     FKKGKMSFIAQDFNSLNVITILDGRTQATIRNHFLRYPRKVRNQVKVITMDMFSPYYQ
                     LAKQLFPNAKIVLDRFHIVQHLSRAMNRIRIQIMNQFDRTSQEYRALKRYWKLIQQDS
                     RKLSDKRFYRPMFRMHLTNKEILEKLLSFSEELRQHYELYQLLLFHFQEKNSDHFFDI
                     IELEIATVNPIFQTVFKTFLKDKD"
BASE COUNT          389 a          247 c          184 g          300 t
ORIGIN      
        1 gacctataat gaaaagcgac taaacaactc attagaaaga ctcatatgga acaactaaat
       61 cttatcacaa attttctcag aattaaagat aaaaatatcg ttatcactga tgaatatgat
      121 atgggaactc acttagaact ccacggtcac ttggattaca cagcccctaa atgcccttcc
      181 tgcaagggac aaatgacaaa atacgatttc caaaaagcct ccaaaattcc ctacctagaa
      241 acagctggct atcccttact tatccgactt agaaagcgtc gcttcaagtg taaagattgc
      301 ggaaaaatag cggttgctga aactcctctt gtcaagaaga accaccaaat ctctgtcgcg
      361 gttaaccaga aaatcgccca attactcatc gaaaatcaag caatgacaca tattgcacac
      421 aggctatcta tctcaacctc atcagttatg agaaagctta atgagttcaa gtttgaaaca
      481 gattggaata ccttacctga ggtgatgagc tgggatgaat atagcttcaa gaaggggaaa
      541 atgagcttta tcgctcaaga tttcaactcc ctaaatgtca ttactattct ggacggaaga
      601 acacaagcaa ccatccgaaa ccactttcta cgctatccta gaaaggttag aaatcaagtc
      661 aaagtcatta ccatggatat gtttagtccc tattatcaac ttgctaaaca gctttttccg
      721 aatgcaaaaa ttgtactcga ccgctttcat attgttcaac accttagtcg tgctatgaac
      781 cgtattcgta ttcaaattat gaatcaattc gacagaacat cgcaggaata cagagccttg
      841 aaacgctact ggaaattgat tcaacaggat agtcgtaaac tcagcgataa acgattttat
      901 cgccctatgt ttcgaatgca tttgactaac aaggaaatac tggaaaaact cctgtctttc
      961 tccgaggaac tacgacagca ctatgaactc tatcaattgc tcttattcca tttccaagag
     1021 aagaactcag accatttctt tgacatcatc gaactggaaa tagccactgt taatcctatt
     1081 ttccagacgg tatttaagac atttctaaag gataaagaca
//
LOCUS       DASGBY010000213         1081 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.214, whole genome shotgun sequence.
ACCESSION   DASGBY010000213 DASGBY010000000
VERSION     DASGBY010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.214"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..>1081)
                     /locus_tag="U1396_001991"
     CDS             complement(<1..>1081)
                     /locus_tag="U1396_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5343119.1"
                     /translation="IGLIGSFLLYTHLIQNELGSTKNDGTVEIIAEQPNQVIDSIQIN
                     GRYIHSSEIIENQWGINDADLIPNFSSLGEENSLVIKSSSSVRTLSFEYFVSENPTIV
                     KIKVGGQLVESIDTSTGDKYKNLAFIELPYTLRITKDNQFWYLHLIVLALGLTCFILN
                     GATWRIKRRDIHILTILLIVQYIFTTFTFPRLYRNELVLFNSNFNKMETQQLLVALTF
                     LIFFGLLGYKQLRGHISKAFKTISLSVIYLLVPIFSLFIIENSYSQFSTLSSNSLWNN
                     LIIIGVLYLILFFTTNLRFASLLILSASVFIGISNQLLIDSRGAPLLFYNLFQITDGL
                     NVASSVAININNRMLQSMVFSYILLT"
BASE COUNT          377 a          146 c          199 g          359 t
ORIGIN      
        1 aggtcaataa gatataagaa aataccatgc tttgtagcat tcgattgttg atattaattg
       61 ctacgctaga agctacattt aatccgtctg tgatttgaaa aagattataa aataatagag
      121 gagcaccacg gctgtcaatc aaaagttggt tacttatacc aataaatact gaagcggata
      181 gaattaatag gctggcaaat cgtaagttcg ttgtaaagaa cagtattagg tagaggactc
      241 cgataatgat tagattgttc caaagactgt ttgaggaaag agtagagaat tgtgagtagc
      301 tattttcaat aataaataat gaaaaaatgg gaactagaag ataaatcact gatagactaa
      361 tcgttttgaa ggctttagag atatgacctc ggagttgttt gtatcccaaa agaccaaaaa
      421 atatcagaaa agttagtgcg actaatagtt gttgagtttc cattttatta aagttcgaat
      481 taaatagcac taattcattg cgatataaac gtggaaatgt aaaagtagtg aatatatatt
      541 gaacgattaa taatattgtt aagatatgga tatctcttct tttgattctc catgttgctc
      601 catttaagat aaagcatgtt agacctaaag caaggactat taagtggagg taccaaaatt
      661 gattatcttt agttatccgt aaagtatagg gaagctcaat aaaggctaaa tttttatatt
      721 tatctccagt tgatgtgtca atggattcaa ccaattgtcc accgacttta atttttacaa
      781 tagtcggatt ttcactaaca aagtattcaa atgataaggt tcttacagaa gaggaagatt
      841 taattacgag tgaattttcc tcacctagag aagagaaatt agggattaaa tcagcatcat
      901 tgattcccca ttggttttct ataatttctg atgaatgaat atagcgtcca tttatttgga
      961 tgctgtcgat tacttggttt ggttgttctg ctataatttc tacagttcca tcatttttcg
     1021 tagaacctaa ttcgttttgt attagatgtg tatacagtaa aaaacttcca atcaatccga
     1081 t
//
LOCUS       DASGBY010000214         1052 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.215, whole genome shotgun sequence.
ACCESSION   DASGBY010000214 DASGBY010000000
VERSION     DASGBY010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.215"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(73..420)
                     /locus_tag="U1396_001992"
     CDS             complement(73..420)
                     /locus_tag="U1396_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343120.1"
                     /translation="MKHIVTKRNYKVGACAMALALLMTTAGGAVVNANTHQSFESSYG
                     FSGRGGDGGVLLKLKGPTESVNQGVGNVEPVNPPVTQMAPSEPKSWFGSFWGGVQRLW
                     RALCCGLGFCPSR"
BASE COUNT          347 a          216 c          158 g          331 t
ORIGIN      
        1 atgaaggatt tacaaattta attgactaaa tattacaaga ttataaaatc actataaaaa
       61 atcatgcaca ccttaacgtg atggacaaaa gcctaatcca caacaaagtg ccctccacaa
      121 tctttgtaca ccaccccaaa atgaaccaaa ccatgatttt ggttcagaag gagccatttg
      181 agtcacaggt gggttgacag gctcaacatt tccaacccct tgattgacag attcagtcgg
      241 ccccttcagt tttaggagaa caccaccatc tcctcctcta ccagaaaaac catatgacga
      301 ttcaaaagac tgatgagtat ttgcatttac aactgcacca cctgcagtag tcatcaacaa
      361 tgcaagtgcc atagcgcatg cgccaacttt ataattacgt tttgttacaa tatgtttcat
      421 gatgaaacat ctcctttgta tggatatttg cttcctccta tcggaaacgt agtaacagta
      481 tagcacaaaa aaataactca aaaaccaact ttagaaaaag attatataaa aaccagaaaa
      541 ctacctgaaa aaaatgaaaa cgttatacaa aacgtagaga aaatgatact atttcgccca
      601 tttcacttat ccctatcaat tttcaacatg ataaaggata gcaatttagt aatacctctt
      661 gttgaaattt tctcgtatat tcaatttaac gctcagaata tttataatca cgtaaccgtc
      721 ctgtaggagt atatagaaaa agaggttcaa agtcatttcg actatgagac cttttttcta
      781 tttgcgttta ttctgatttt ttagccagtg gtattgtcat tcagtttatc tttgattact
      841 tagctagttt gctttgctgt actttacata agcaacttgc ctcgcaagtt ttattgccaa
      901 cctgactgtg gtaaaggact tgacaagttc atcaacaagt tttcatttct agttgttgac
      961 catcctcaga ccttttaatc tcctgctatg attggctttg caaatctaat ctccaaactt
     1021 ttttgcattt ctaagcgtag gtagatgtga gt
//
LOCUS       DASGBY010000215         1039 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.216, whole genome shotgun sequence.
ACCESSION   DASGBY010000215 DASGBY010000000
VERSION     DASGBY010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.216"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            373..1039
                     /locus_tag="U1396_001993"
                     /pseudo
     CDS             373..1039
                     /locus_tag="U1396_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611222.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT          351 a          184 c          204 g          300 t
ORIGIN      
        1 aaaacgaatc cctctcattt aggtttgaat gactaatata gttatttaat ttgtctttaa
       61 ttactttaat gtatggatgt ctttcccact cccatcaatt atagagatca gcttcagact
      121 gtaaaacacg aattgctaag atgttgacaa aagttggcgg cggtagctca ttgccttgta
      181 tgatcgaatg aattagcttt cagacaagga actgaggggc aggtagctag aacagcctaa
      241 aggctgttct aggttggaaa taagacttgc gaaacaagtc actttcgtag agtacggcag
      301 gccgaaaacg gcgatgtatc agagttatag ttaaatgaaa caaaaacagt acatttatga
      361 tataatgtat ttatggcata ttcattagat tttcgtaaaa aagttctcgc atactgtgag
      421 aaaacgggca gtattactga agcatctgtt attttcgata tttcacgcaa cactatctat
      481 caatggctaa aattaaaaga gaaaaccggc gggcttcatc accaagttaa aggaaccaag
      541 cccagaaaag ttgatagaga taaattaaag aactatcttg aaactcatcc agatgcttat
      601 ttgactgaaa tagcttctga atttgactgt catccaacag ctattcatta cgccctcaaa
      661 gctatgggat atactcgaaa aaaaagagct gtacctacta tgaacaagac cctgaaaaag
      721 tagaacagtt ccttaaagaa ttgaataact tgagccacct gactcctgtt tatattgacg
      781 agacagggtt tgagacatat tttcatcgag aatatggtcg ctctttgaaa ggtcagttga
      841 taaaaggtaa ggtctctgga agaagatacc agcggatatc tttagtggca ggtctcataa
      901 atggtgtgct tatagccccg atgacataca aagatactat gactagcgac tttttcgaag
      961 cttggttcaa aatattctta ctacccactt taggtaaacc atctgttatc atcatggaca
     1021 atgcaaagtt tcataggat
//
LOCUS       DASGBY010000216          992 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.217, whole genome shotgun sequence.
ACCESSION   DASGBY010000216 DASGBY010000000
VERSION     DASGBY010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.217"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            23..973
                     /locus_tag="U1396_001994"
     CDS             23..973
                     /locus_tag="U1396_001994"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEM5343121.1"
                     /translation="MTKKIIGVDLGGTSVKLAILDVLGNIEAQWSIPTDISDNGKNIV
                     SDIISSIQEYLLENSLSLGDIKGIGMGSPGKIDFEKGTVTGAYNLGWSKEQNIREQFE
                     EAFGRPFYIDNDANVAALGERWKGAGDNAPDVIFVTLGTGVGGGIIAQGQLLHGVNGS
                     AGEIGHMVVDEDGFSCTCGNIGCLETVASATGIVNIAKSFASQFDEPSELRRLILEHQ
                     VTAKDVFDFAKKNDSLGQKIVWQFANYLGKSLSQLANALNPNYIVIGGGVSAAGDFLL
                     DKVKEEFDRFAFPTVRNSTKLALATLGNNAGVIGAASLVL"
BASE COUNT          324 a          124 c          232 g          312 t
ORIGIN      
        1 tgtaacagag gaggaataag tcatgacgaa aaaaataata ggcgttgatt taggtggaac
       61 atcagtaaaa ttagccattt tagatgtttt aggaaatata gaagctcaat ggtcaatccc
      121 aacagatata agtgataatg gcaaaaatat tgtatctgac attatcagtt ccattcaaga
      181 atatctatta gaaaatagct tatctttagg cgatattaag ggcataggca tgggaagtcc
      241 tggcaagatt gattttgaaa aaggaacagt aacaggagct tataacttag ggtggtcgaa
      301 agaacaaaat atcagagaac aatttgaaga agcatttggt cgtccttttt atatagataa
      361 tgatgctaat gttgcggcgc ttggtgaacg atggaagggg gctggagata acgcacctga
      421 tgttattttt gtaacacttg gaacaggtgt aggtggagga attattgctc aaggccaatt
      481 acttcatggt gttaatggaa gtgctggtga gattggtcat atggttgttg atgaagatgg
      541 attttcatgt acttgtggga atattggatg tttggagact gttgctagcg ccacagggat
      601 tgtcaatatt gcaaaaagct ttgctagtca atttgatgaa ccaagtgaat taagaaggtt
      661 aattttagaa catcaagtaa ctgcaaagga tgtttttgat ttcgctaaga aaaacgattc
      721 tcttggccaa aaaattgtat ggcaatttgc caattactta ggtaaatcat tgagtcaatt
      781 ggctaatgca cttaatccca attatattgt tattggtggt ggtgtttctg ctgcagggga
      841 ttttctttta gataaagtaa aagaagagtt tgatagattt gcttttccaa cagttaggaa
      901 ttctactaaa ctagctttag ctactttagg gaataatgct ggagtgattg gagctgcaag
      961 cctagtttta taatagttat accaacaaat at
//
LOCUS       DASGBY010000217          971 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.218, whole genome shotgun sequence.
ACCESSION   DASGBY010000217 DASGBY010000000
VERSION     DASGBY010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.218"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..910)
                     /locus_tag="U1396_001995"
     CDS             complement(<1..910)
                     /locus_tag="U1396_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISSsu2 family transposase"
                     /protein_id="HEM5343122.1"
                     /translation="MLDQIKAHLLDSINDIVSSANQFVLHPEKDFSRQSQLTMKTMIQ
                     AILTMGGNTLAKELLDLDLPVSQSAFVQRRYQIKHQAFKTLFRDITSKIPISDNLPIL
                     AVDGSDVILPRNRFDKTTSFQTGPHHTPYNLIHINALYNLEQEIYHDLRIQDNREVDE
                     RAAFIDMMKTSSFKQALVIMDRGYESYNVMAHCQERNWSYIIRIRDGNHSMKSGFNLP
                     DTPCFDEAFDLNICRKQTNDMKELYRDFPNQYHFLPHNASFDFLLNSSRKSDPLQFYE
                     LHFRMVRLEIKPGFFETLVTNTDYSPE"
BASE COUNT          308 a          165 c          201 g          297 t
ORIGIN      
        1 tttctggaga ataatcggtg tttgtcacca aagtttcaaa gaaacctggc ttgatttcga
       61 gacgcaccat tcgaaaatga agttcgtaaa actgaagtgg gtcgcttttt cggctagagt
      121 ttagtaaaaa gtcaaaggaa gcattatgag gtaaaaaatg atactgatta gggaagtctc
      181 gatacagttc tttcatgtca ttggtttgtt tgcgacagat gtttaggtca aatgcctcat
      241 caaaacaagg ggtatcaggg aggttaaatc ctgatttcat agaatgattc ccgtcacgaa
      301 tacgaataat ataggaccaa tttctttctt ggcagtgagc catgacattg taggattcat
      361 accccctatc cattattacc agagcttgtt tgaaagaaga ggtcttcatc atgtcaataa
      421 aagctgcacg ttcatcaacc tctcgattat cttggatccg taaatcatga tatatctctt
      481 gttcaagatt gtagagagca ttgatatgaa taagattgta aggagtgtga tgtggtccag
      541 tttgaaaaga ggtcgtttta tcaaaacgat ttcttggtag aatcacatca ctgccatcaa
      601 cagccaggat agggagatta tcagagattg gaattttaga agtaatatcc ctaaaaagtg
      661 ttttaaaagc ttggtgttta atctgatacc gtcgttgaac aaaggcagat tgagagacag
      721 gcaaatctaa atcaagtagc tctttggcta aggtattacc acccatggtc agtatggctt
      781 gaatcatggt tttcatagtt agctgacttt gccgactaaa atctttttca ggatgaagca
      841 caaactgatt ggcactagaa acgatgtcgt taatactatc aagtaaatga gctttaatct
      901 gatctagcat gacttttccc cttttatttt tagtgtaaca taaaaactaa cccaccacaa
      961 aacgtgatag g
//
LOCUS       DASGBY010000218          966 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.219, whole genome shotgun sequence.
ACCESSION   DASGBY010000218 DASGBY010000000
VERSION     DASGBY010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.219"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(3..911)
                     /locus_tag="U1396_001996"
     CDS             complement(3..911)
                     /locus_tag="U1396_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEM5343123.1"
                     /translation="MAEKRFGILITLIAGIAWGLSGVSGQYLMSRGVSVDMLTSLRLL
                     VSGFFLVGLAYATAKEQLLIVLKNRKALLGIFVFAMLGLVLNQMAYLQAIYHTNAGTA
                     TVLQYLCPILVLAYTCLKNREKPSGIELISIILAVAGTFLIATHGKLDELAVTPIGLF
                     WGIFSAFTYALYIILPGKLIRQYGSITVIGLGMLMGGFVVTLGLQTWQHRLPIDGGSF
                     LGLLGIVGVGTIFAYTAFLKGVSMVGPVNGSLLASIEPIASVFFAVWLVNEQFYAIDF
                     VGMLFILLAVLLISLKDILVAQKSIG"
BASE COUNT          350 a          240 c          151 g          225 t
ORIGIN      
        1 tattaaccaa tactcttttg ggcaaccaat atatctttta aagaaataag caaaacagca
       61 agtaaaataa acaacattcc aacaaaatca attgcataaa attgttcatt gaccaaccat
      121 actgcaaaaa agacagatgc aatcggctca atcgaggcca aaagactgcc attgacagga
      181 ccaaccatac tgacgccttt aagaaaggca gtataggcaa aaatcgtccc gactccgaca
      241 atacctaaca ggcccaggaa acttccacca tcaataggaa gacgatgctg ccaagtttgc
      301 aaaccaagcg tgactacaaa accacccatt aacatcccta aaccaatcac tgttatactg
      361 ccgtattgac ggatcaattt acctggcaaa ataatatata gcgcataagt aaaggctgaa
      421 aagattcccc agaacaaacc gattggagtc actgccaatt catctaattt tccatgagtc
      481 gcaatcaaaa aagttcctgc tacggctaag ataattgaaa tcaactcaat ccctgatggt
      541 ttttccctat ttttcaaaca ggtataagcc aagactaaga tagggcaaag gtattgtaaa
      601 accgtagccg ttccagcatt ggtatgatag atggcttgta aataagccat ctggttaaga
      661 accagaccca acatcgcaaa aacaaaaatt cccaacaagg cttttctatt tttcaacact
      721 atcaacagct gttctttcgc tgtagcataa gccaggccaa cgagaaagaa tcccgatacc
      781 aacaaacgca gggaggtaag catatccact gaaacaccac gtgacatcaa gtactgtcca
      841 ctcactccag acaagcccca ggctatacct gctattaatg taatcagtat cccaaatctc
      901 ttttccgcca ttatatctcc ttctcacact gtgaatactt tcattatacc aaaagagcag
      961 gacacc
//
LOCUS       DASGBY010000219          950 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.220, whole genome shotgun sequence.
ACCESSION   DASGBY010000219 DASGBY010000000
VERSION     DASGBY010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.220"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..>950)
                     /locus_tag="U1396_001997"
     CDS             complement(<1..>950)
                     /locus_tag="U1396_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhamnan synthesis protein F"
                     /protein_id="HEM5343124.1"
                     /translation="PDRIYSLLHLIRMKTKYPVELIERHLRQIIIPGTSFIPPIRVSQ
                     TTETVRSSTSVLLHVHIESVSIFEEYIEELCKISDRCQLLITLPETDFSNKCSIVERY
                     LSTYKLRAQIAKLTDELHFFEIVNNYMGDAKYLAHVTVKQTKEIKYSVEDIIDRHQLR
                     KMFFTSFDAVISNFESQSNLAVVIPDLTTNQRYDRQSLREGNPELIRQLNILYESLVR
                     TKKVDFYKVPYIIGEEVSWYWIKTEHYKKIEEKFRSIDFSKEDRLLLVPILFIYSAWD
                     LSNDYAVVENTENVSPILEKISFSSERELRLIIEEKEFLQ"
BASE COUNT          305 a          179 c          127 g          339 t
ORIGIN      
        1 tttgtaaaaa ttccttttct tcaataatta aacgcaattc tctttcgcta gaaaaactaa
       61 tcttttccaa gattggactc acattttcag tattctcgac cactgcataa tcgtttgata
      121 aatcccacgc gctataaata aataatattg gaactagcaa taatctatct tcttttgaaa
      181 aatcaatgct tctaaatttc tcctcaatct ttttatagtg ttctgttttt atccaatacc
      241 aacttacttc ttctccaatt atataaggca ctttataaaa atcaactttc ttagttctca
      301 caagtgattc ataaagtatg ttcaattgac gaataagttc tggattgccc tctcgaagac
      361 tttgtctatc atatctttga ttagttgtta agtctggaat aactacagcc aaattagatt
      421 gtgattcaaa attagaaatc actgcatcaa atgatgtaaa aaacattttc ctcaactgat
      481 gcctgtcaat aatatcctct acagaatatt ttatttcctt tgtttgtttg acagttacat
      541 gagcaagata tttggcatct cccatatagt tgtttactat ttcaaaaaaa tgcaattcat
      601 ctgtgagttt tgcaatttgg gctcgcaatt tgtaagtaga caaatatctc tcaactatac
      661 tacacttatt tgaaaaatca gtttctggca atgttattag taactgacac ctatcagata
      721 ttttgcataa ctcttcaata tactcttcaa aaatagacac tgattctatg tgaacatgaa
      781 gaagtaccga cgtcgaagaa cgaacggtct ccgtcgtttg cgaaacccgt attggaggaa
      841 taaaactcgt acccggaata attatctgcc tcaaatgcct ctcgattaat tcaactggat
      901 atttcgtttt catccttata agatgtaata aagagtatat tctgtctgga
//
LOCUS       DASGBY010000220          947 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.221, whole genome shotgun sequence.
ACCESSION   DASGBY010000220 DASGBY010000000
VERSION     DASGBY010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.221"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
BASE COUNT          418 a          151 c          141 g          237 t
ORIGIN      
        1 acagcatccg aaaaatcaaa atggaacaat aaaaagagca atgaactgaa caaaataaaa
       61 ttagtgctat taactacgaa aaaatgcaag aaaaacaaat agtccatatt acctataaaa
      121 aacagaggaa ctgtttgaaa caaccccaat aaaagtgata gaaatatcaa ggacacaagc
      181 ttgacaagaa accaatcttt tatactccca attcttagta tcgttaagtt gaagtttgtt
      241 gttgataaac cagaaaatag ctgttgcaac aaaaaaatat tctgtgcttg aaacaatagg
      301 taagaaagta gactaatggt ttctatgcca tccaacccag gaccttttag aagatactca
      361 ccgaagccga cttcaaaaaa attcaatagc gctaacaata agtaatacat ccctgataaa
      421 attagataaa tataaaactg agagctagta gtcaaacaac gccattccca gaataaagaa
      481 ttttttataa tggaactctc cctcattcct attcctccca ctctgtattt cttattttat
      541 ataggtttaa caaaatgaaa aaaagcaaga gaattagcca atacaataac tccttgtggt
      601 aacttactga ttttaaaata tagtgatgga taggaaagac ttgactaatg gttgcattga
      661 tcggataaaa ccagaaaaca gattgtatta acaaaaatga gaaaagatta gccatgactg
      721 tacttccttt ttgaaaaaga agaaaattaa acaaggctat ttccgagagg aaaataagat
      781 aacataaaaa actaaacaag ggcaaaagta tactttgaaa attagaaacg taagatattt
      841 cataaacttc tgatagaagt ggttgatgta tagaagaaat tgaaaaagaa aacgaattta
      901 ccaaccccat caaaaatacc agacacatca gaagaaatac aaataag
//
LOCUS       DASGBY010000221          931 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.222, whole genome shotgun sequence.
ACCESSION   DASGBY010000221 DASGBY010000000
VERSION     DASGBY010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.222"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            81..>931
                     /locus_tag="U1396_001998"
     CDS             81..>931
                     /locus_tag="U1396_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5343125.1"
                     /translation="MPNFASLHDIITGINSGIFKEEGLEVELIEFADGPTIIASLESG
                     SIDIGNIGPGAHKLAIEGRAEVVAFSQLGNADELIARSDRGIDSIKDLRGKKIGTASG
                     TSAETILKLALLDANLSEKDVEIIDMDASAIVTAMLSGSIDVAATWSPNTTLIKRELK
                     EKVVVLADNSRYRDQSPAIASYVTFPGYSEKNNEKISKFLKGLYRAMDYRAEHMKEVS
                     KWVATQIGSDITAVQDQLQDGEWLTSRQMIQLINTGILQQYYEKQQKNLIVSGIVDIS
                     RNINEYVL"
BASE COUNT          323 a          128 c          196 g          284 t
ORIGIN      
        1 ttattttggt tgcatgtagt tctaatcaaa ctttaataag agacaattca gccaatatag
       61 ataaaataag aattgcatat atgccaaatt ttgcaagtct tcatgacatt attactggaa
      121 taaattcagg tatctttaaa gaggaggggc ttgaagtcga attgattgaa tttgctgatg
      181 gtccaactat cattgcatct ttagagtcag gttcaattga tattggtaat attggtccgg
      241 gtgcccataa attggcgatt gaaggtagag cagaagttgt tgcatttagt caacttggga
      301 atgctgacga attgattgct cggtcggata gaggaattga ttcaataaag gatttgaggg
      361 gaaagaaaat tggaacagca tctgggacat cagcagaaac aattctaaag cttgctttgt
      421 tagatgcaaa tttgtctgaa aaagatgtag aaattattga tatggatgcc tccgctattg
      481 ttacagcgat gttgtcggga tcaatagatg tagctgcaac ttggtcacct aatacaactt
      541 taataaagcg agaattaaag gaaaaagttg ttgtattagc tgataattca cgttatagag
      601 accaatctcc agctattgct tcatatgtaa cttttccggg gtattctgaa aaaaacaatg
      661 aaaaaatttc caagttttta aaagggttat atcgtgcaat ggattatcga gctgaacata
      721 tgaaggaagt ttcaaaatgg gttgctaccc aaatcggttc agatatcaca gctgttcaag
      781 atcaactaca agatggagag tggttaacaa gtagacaaat gattcaattg attaacactg
      841 ggatacttca acagtattac gagaaacaac aaaaaaattt aatagtatct ggaatagtag
      901 atatctctag gaacattaat gaatatgttc t
//
LOCUS       DASGBY010000222          910 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.223, whole genome shotgun sequence.
ACCESSION   DASGBY010000222 DASGBY010000000
VERSION     DASGBY010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.223"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            117..878
                     /locus_tag="U1396_001999"
     CDS             117..878
                     /locus_tag="U1396_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5343126.1"
                     /translation="MIKKERHERILDMLNIEGVITVKDMMKELNISDMTARRDLDALA
                     EAGFLTRIHGGAQRLYKDEEPHEKTHIEKKVLQTKEKKLIAQKANSIIKDGETVFIGP
                     GTTLEHLAVELKTRNIRVITNSLPVFLILNKSRTVDLLLIGGEYREITGAFVGSMATT
                     NLKTLRFSKAFVSANAVSDNAIATYSDVEGEIQQLALDNAVEKILLVDSTKFNRYDFF
                     NFYTLEQIDTIITDSQISQDQLNEFGQQTTIIQAD"
BASE COUNT          327 a          135 c          156 g          292 t
ORIGIN      
        1 ttatattgtc aactattttt atgtttatta tgttctgttt tgtttgtttt tatattttta
       61 ttatgataga atactaacag atagttattt tgtaagtaca gaaaggaaac atagttatga
      121 taaagaaaga aaggcacgaa cgtatcttag atatgttaaa tattgaaggt gttattactg
      181 tcaaagatat gatgaaagag ctaaatatct ctgatatgac tgctagaaga gatttagacg
      241 cacttgctga agcaggattc ctgactcgta tacatggagg agcacaacga ctctataaag
      301 atgaagaacc gcacgaaaaa actcatattg aaaaaaaggt acttcaaact aaagagaaga
      361 aacttattgc acaaaaagcc aattcgatca tcaaagatgg tgaaactgtt tttattggtc
      421 ctggaacaac gttagaacat ctagcagttg agttaaaaac tcgtaatatt cgtgtaatta
      481 caaacagtct tcctgttttc cttatactga ataagagtag gactgttgac ttattattga
      541 ttggcggaga gtacagagaa attacaggtg ctttcgttgg ttcaatggct acaaccaact
      601 taaaaacctt acgtttttct aaagcatttg taagtgctaa cgccgtatca gataatgcta
      661 tcgcaacata cagtgatgtt gaaggagaaa ttcaacaatt agcactggac aatgctgttg
      721 aaaaaatttt gttggttgat agtaccaaat tcaatcgtta tgatttcttt aatttctata
      781 ctctagaaca aattgatact atcatcaccg atagtcaaat atcccaagac caattaaatg
      841 aatttggcca acaaacaact attattcaag cagattaaac tcacttatga cttataaaaa
      901 tatcgttttt
//
LOCUS       DASGBY010000223          907 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.224, whole genome shotgun sequence.
ACCESSION   DASGBY010000223 DASGBY010000000
VERSION     DASGBY010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.224"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            378..887
                     /locus_tag="U1396_002000"
     CDS             378..887
                     /locus_tag="U1396_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343127.1"
                     /translation="MLKYIRALPLVIVAGAVVYFTIFICIDNGDWTYVVTRALGLKEE
                     HANNVSLIVIGTQSLFLTSDWFYKRIRAFLNRRLEKAKGLNRQIYLGYKAGIEFLMAL
                     PKRTILFTFYLLLVVAESVGLIEKAKDYAAVIIFIIAVDRVTKIWPEEKRRMIEFSQK
                     IKKRIKSVG"
BASE COUNT          267 a          142 c          208 g          290 t
ORIGIN      
        1 attggaagtc ttcttctttt tggggtaagt aaaaaatgct aagggtgtac agttgtcgta
       61 cctgaaattc tagcccctgc ttgaccgtac ttggtataac atattacaat atatacaaga
      121 acctgtgttc acagttcatc gctttcattg gagtgtttga aggtggagat aaggaaagga
      181 gattcctgac aaattaggtg gtaggcgaaa actgccacag gagcttttta ctcgtcgaag
      241 caataaagtg aaactaaatg gtgatagagt caagtattcc ttcaaaaaat tgccttgatg
      301 agcaaaaacg atttcttgca taagaacact ttgtttatga atataggttc taagatttga
      361 ccaagagagg ttattatatg ttgaaatata tccgtgccct tccccttgtt atagtagcgg
      421 gagcggttgt ttactttact atttttatct gtattgataa tggtgattgg acctatgttg
      481 tgactagagc gctagggctt aaggaagaac atgccaataa tgtttctctg attgtaattg
      541 gtacccaatc actttttcta acttcggatt ggttttacaa gcggattcgt gcctttctca
      601 atcgtcgttt ggaaaaggcc aaagggctta atcggcagat ttatctgggc tataaggcag
      661 ggattgagtt tttgatggcg ttacccaaac gaactatttt attcacattc tatctacttt
      721 tagtagttgc tgaaagtgtt ggtctgattg aaaaagccaa ggactatgct gcggtaatca
      781 tcttcataat tgctgttgac cgcgtgacca aaatctggcc ggaggaaaag cggagaatga
      841 ttgagtttag ccagaagatt aagaaacgga ttaagagtgt gggataagtc aagattaaat
      901 attttaa
//
LOCUS       DASGBY010000224          902 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.225, whole genome shotgun sequence.
ACCESSION   DASGBY010000224 DASGBY010000000
VERSION     DASGBY010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.225"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            95..406
                     /locus_tag="U1396_002001"
                     /pseudo
     CDS             95..406
                     /locus_tag="U1396_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637882.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
     gene            complement(406..673)
                     /locus_tag="U1396_002002"
                     /pseudo
     CDS             complement(406..673)
                     /locus_tag="U1396_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735813.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
     gene            675..902
                     /locus_tag="U1396_002003"
                     /pseudo
     CDS             675..902
                     /locus_tag="U1396_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637882.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
BASE COUNT          296 a          133 c          192 g          281 t
ORIGIN      
        1 ggagaaaaaa tatgcatttt gctacaatga aagtccgatg ttttatataa aaaacggtat
       61 aagtatgcac aggattattt taaaggagaa tatgatgatg aaaaaatata ttatgacagg
      121 attggttttg ttggcaacga tgaccctaag tgcttgtagt ggaaatacta ctcaagaaga
      181 tacttccctg aaggatgttc aggaaaaggg aaaactaatt gttgcattga atccagaatt
      241 tccaccattt gagtttagaa cactggttga tggcaaagat acaatcgttg gagctgacat
      301 tgagcttgca aaagccattg gtcaagaatt gggtgtagaa gtcgaatttt cagcgatgag
      361 ttttgataat gttttgaaca atgtccagtc agggcaatcg gatattacct tctgtgattt
      421 taattgatta atcagctctc cgttcgaagc tagagcaata accgtggaag acggaagctg
      481 ttctttaata atttgttctt gaatagaacc tttttgtgct cctatatttg cctcagctag
      541 agaatcaagc gatgtatatt gtgcaagatc ctctttattt ataataactt tattggttga
      601 ggtgtagtaa ggaatggaaa aatcatacac catacacttt tgcacgctct tcagtggctg
      661 aaattcctga aatggtagaa gcagttattt ttgaagagcc gattgcgaaa gcctatgttg
      721 ccaaaaatga tgacttggtt attttagata ctgagataaa aagtagctat tcagatgcct
      781 atgctattgc cttaccaaaa ggaagtacag ctttaaagga aaaagttgac tctgtcatta
      841 caaaactagt ggaatctgga cagatggatc aatttgttca agaagcctat gaattatcca
      901 tt
//
LOCUS       DASGBY010000225          867 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.226, whole genome shotgun sequence.
ACCESSION   DASGBY010000225 DASGBY010000000
VERSION     DASGBY010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.226"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..>867)
                     /locus_tag="U1396_002004"
     CDS             complement(<1..>867)
                     /locus_tag="U1396_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HEM5343128.1"
                     /translation="LSLQTAMTEYNSSMVKGNEVQDQYDRSIGYVTLDFDNENGNGEQ
                     VYAVVKNPNLPKDQVLEVTVLFRGSTGPNEVLSKPADVWNDWVENDLFLGLRVFAQDH
                     PNYTQNHDHASGQLKASSEALNTIMATYPNAKVNLYGHSLGSMDVQYAIANLSDTDIN
                     RLESAYIYNGPNIYGILDDQQKARVDSVKGLIHNYADPKDPVSMVGRDLDKGSLDSVG
                     MVHFVESKDIDLGNQHMTYGYQLDSSGNIKVLQTSSTEGINGTIIEMSRFQQMKQTLS
                     RGGFSSRETIYL"
BASE COUNT          227 a          191 c          189 g          260 t
ORIGIN      
        1 tccagataga tggtttcacg cgaactgaag ccaccacggg atagggtttg tttcatctgt
       61 tggaagcgac tcatttcaat gatggtccca tttatccctt ccgtggaaga agtctgtagg
      121 accttaatat tgccagaaga gtctaactga tagccatagg tcatgtgctg attgccaaga
      181 tcgatatcct tactttccac gaagtggacc atcccaacgg aatctaaact tcctttgtct
      241 aggtcacgtc cgaccatact gacaggatcc tttggatctg cataattatg aatcagccct
      301 ttgacggagt cgacccgtgc tttctgttgg tcgtctagga tgccgtatat attagggcca
      361 ttatagatat acgcgctctc taagcggtta atatcggtgt cagataaatt agcaatggcg
      421 tactggacat ccatcgaacc tagggagtgg ccgtacagat tgacttttgc atttgggtag
      481 gtagccatta ttgtatttag agcttctgag gatgctttta attgtccact cgcatggtca
      541 tgattctggg tatagttcgg atgatcttga gcaaagacgc gcaaacctaa aaaaagatcg
      601 ttttcaaccc agtcattcca cacatctgca ggttttgaca acacttcatt tggtccagtc
      661 gaacctcgaa agagaaccgt aacttccaac acttggtctt tgggcaaatt tggatttttc
      721 acgacagcat aaacctgttc accattgcca ttctcattgt cgaagtcgag ggtgacataa
      781 ccaatacttc gatcgtattg atcttggact tcattacctt taaccatact agagttatat
      841 tcagtcatag cggtttggag actgaga
//
LOCUS       DASGBY010000226          865 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.227, whole genome shotgun sequence.
ACCESSION   DASGBY010000226 DASGBY010000000
VERSION     DASGBY010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.227"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(80..844)
                     /locus_tag="U1396_002005"
     CDS             complement(80..844)
                     /locus_tag="U1396_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5343129.1"
                     /translation="MIKDERVLELIEVIKKKKRIAVKELVEITFSSLSTLRRDLIFLE
                     NQGLIKRKHGYVTLSSINTMELSHQIREGESTRQKRFIANLAKDFIRSGMCIYLDSST
                     TVYELCPHLAELDNLIIFTNGLHTAQTLSETVRDNSKIFITSGEVKHQSCSVVNYDKE
                     NSLLDHFNIDLAFCSARGIDDQYVYEASLSQAISKKSIIDKAHETILLIDSSKFYKTG
                     FFKINPLSKYTTFISDSMPDQKLLDAVELFDGEWAY"
BASE COUNT          296 a          128 c          135 g          306 t
ORIGIN      
        1 ttggtaatag attccagtta tttaagatta gtaaatgaag tttttatgaa tgaatatagt
       61 agaaattgag taatttgact taatatgccc attctccatc aaataattct actgcatcta
      121 ataatttttg gtctggcatg ctatcagaaa taaaggttgt atatttagaa agtggattaa
      181 ttttgaaaaa tccagttttg tagaattttg aactatcaat caacaaaatg gtttcatgtg
      241 ctttatcaat aatactcttc tttgaaattg cttgacttaa agatgcttca taaacatatt
      301 ggtcatcaat gcctcttgct gaacaaaaag ccaaatctat attaaagtga tctaataaag
      361 aattttcttt atcatagttg actacagaac aagattgatg ctttacttct ccagacgtaa
      421 taaaaatttt agaattatct ctaacagtct cagataaggt ttgtgctgta tgtagaccat
      481 ttgtaaaaat aattaaatta tctagttcgg cgagatgagg acagagttcg tagacagtcg
      541 tactggaatc aagataaata cacataccag agcgaataaa atctttggcc agattagcta
      601 tgaatctttt ttgacgagta ctttctcctt cacgtatttg atgagaaagt tccattgtgt
      661 taatagagga aagagttaca taaccatgtt ttcgcttgat aaggccttga ttttctaaaa
      721 aaattaaatc acgacgtaga gtactaaggc tggagaaagt gatttctaca agttctttta
      781 cagcaattct ttttttcttt ttaataactt caatcagttc aagtacacgt tcatctttta
      841 tcatagcatc ctccaatata aaact
//
LOCUS       DASGBY010000227          845 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.228, whole genome shotgun sequence.
ACCESSION   DASGBY010000227 DASGBY010000000
VERSION     DASGBY010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.228"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..>845
                     /locus_tag="U1396_002006"
     CDS             <1..>845
                     /locus_tag="U1396_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEM5343130.1"
                     /translation="GGTTDKGVTYDGKTITATVTVTDNGSGELSAAVSYSDETPFNNT
                     YAVSGTRAELAVKKTLTGRELKEDEFEFVLKNKANEEVATAKNDKDGNVKFKELTFDK
                     AGTYTYTVTEKNGGTTDKGVTYDGKTITATVTVTDNGSGELSAAVSYSDETPFNNTYA
                     VSSTRAELAVKKTLTGRELKEDEFEFVLKNEANEEVATAKNDKDGNVKFKELTFDKAG
                     TYTYTVTEVVGGDTAIIYDSLKIKVTVVVTDDGEGKLIAKVEYPEDIEFNNEYVEPTT
                     TTTTE"
BASE COUNT          293 a          130 c          197 g          225 t
ORIGIN      
        1 atggtggtac aaccgataaa ggtgtcactt atgatggtaa gaccattact gcaaccgtaa
       61 ctgtaacaga taatggttca ggtgaattga gtgccgctgt ttcatacagt gatgagacac
      121 catttaacaa tacgtatgcc gtatcaggta ctcgtgcaga actggctgtt aagaaaacat
      181 taaccggtcg tgagttgaag gaagacgaat ttgagtttgt attgaaaaat aaagcaaacg
      241 aagaagtcgc cactgctaaa aacgataaag atggtaatgt gaaattcaaa gaattgacct
      301 ttgataaggc aggtacttac acttatacag tcactgaaaa gaatggtggt acaaccgata
      361 aaggtgtcac ttatgatggt aagaccatta ctgcaaccgt aactgtaaca gataatggtt
      421 caggtgaatt gagtgctgct gtttcataca gtgatgagac accatttaac aacacgtatg
      481 ccgtatcaag tactcgtgca gaactggctg ttaagaaaac attaaccggt cgtgagttga
      541 aggaagacga atttgagttt gtattgaaaa atgaagcaaa cgaagaagtc gctactgcta
      601 aaaacgataa agatggtaat gtaaaattca aagaattgac ctttgataag gcaggtactt
      661 acacttatac agtcactgag gttgtgggtg gagatacggc gattatctat gatagtctta
      721 aaattaaggt aactgtagtt gttactgatg atggtgaggg taaacttatt gctaaagttg
      781 agtatcctga ggatattgag ttcaataatg aatacgttga gccaacaact acaacgacta
      841 ccgag
//
LOCUS       DASGBY010000228          833 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.229, whole genome shotgun sequence.
ACCESSION   DASGBY010000228 DASGBY010000000
VERSION     DASGBY010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.229"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            162..>833
                     /locus_tag="U1396_002007"
     CDS             162..>833
                     /locus_tag="U1396_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5343131.1"
                     /translation="MKAAYITIHDKIKEQIDNGIWKIGQRLPSERDLADEFGVSRMTL
                     RQGITLLVEEGILQRKIGSGTYVASTRVQEKMRGTTSFTELVQLQGKTPSSKLLSYTR
                     TKPNEKEVEQLGLSRGEYVIRMERVRYADNVPVVYEVASIPERLIKNVPKEDVTNHFF
                     KTLMDNGYRIGTSKQTIFARLANEKVAQYLQISKNQAILALKQVSYLEDGQAFEFVNS
                     QYVGER"
BASE COUNT          275 a          147 c          172 g          239 t
ORIGIN      
        1 ataaaaatgt tagtgttcgt atttttattg tttttactca ctttatttta ggtaatctga
       61 cttcattgtt tgcctaggag aattttacca atagagtgtg gcctgaatta gccaaacgcc
      121 tttatttttg gtaaactaga aagaagagaa aggctagata aatgaaagca gcatatatca
      181 caattcacga taaaattaag gaacaaatcg ataacggaat ctggaaaatt ggtcaacgtt
      241 taccaagtga acgcgattta gcagatgaat ttggtgtttc tcgtatgacg ctccgtcaag
      301 gaatcacact tttagtggaa gaaggtattc tacaacgcaa gattggttcc ggtacttatg
      361 tcgccagtac acgggttcaa gaaaagatgc gaggcacgac ttcctttact gaattagtac
      421 aactccaagg aaagacgcca agcagcaaat tattgtccta tacgcgaacc aaacctaatg
      481 aaaaagaagt tgaacaatta ggtttatccc gtggcgagta tgttattcga atggagcggg
      541 tccgctatgc agataatgtt cccgtcgtgt atgaggttgc cagcattcct gaacgcttga
      601 taaaaaatgt cccaaaagaa gatgttacca accatttctt taaaacactt atggacaatg
      661 gttatcgaat tggaacgagc aaacaaacca tttttgcgcg tttagccaac gaaaaagtgg
      721 ctcaatattt acaaatttct aaaaaccagg ctattctcgc actaaaacag gtatcttatc
      781 tcgaggatgg tcaagcattt gaatttgtaa atagtcagta tgttggggaa cgt
//
LOCUS       DASGBY010000229          814 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.230, whole genome shotgun sequence.
ACCESSION   DASGBY010000229 DASGBY010000000
VERSION     DASGBY010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.230"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..>814)
                     /locus_tag="U1396_002008"
     CDS             complement(<1..>814)
                     /locus_tag="U1396_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HEM5343132.1"
                     /translation="DTSIAAENFNRLLDENKTYFLNGSWGSGKTTFLESTESQSKKKF
                     VTIDLWRNTDKRSLVEVAYASLHPVLYWGALLFSFLFVIISILMTNTVNLGLSKFLHP
                     IWMLPVGFISLVVAAVQLVAIKTEIVYSWLLANLCLKNKVLVIDDFDRLTLSQQEEAY
                     RLFSLLRGRLPIVFVGDIENIYSVKDNFLSKIIDRRVELPFVLQSEQIWDDYFIKLEQ
                     RFATEISDSFKKRVKVEKRSLRDREHFNDYVNQEFFSRGKLGHVQVEEQLLV"
BASE COUNT          275 a          165 c          106 g          268 t
ORIGIN      
        1 atgactaata attgttcctc tacctgaaca tgcccaagtt ttcctctgga aaaaaattct
       61 tggttaacat agtcattgaa atgctctcta tcccttagac ttctcttttc tacctttact
      121 ctttttttga aactatcaga aatttcagtg gcaaatcttt gttctaactt tataaaataa
      181 tcatcccaaa tctgttcaga ttgaaggaca aacggcaact ctaccctcct atcaataatt
      241 tttgatagaa aattatcttt tacactataa atattctcga tatcaccaac aaagactata
      301 ggcaacctcc ctcttaacaa ggaaaataat ctatatgctt cctcctgttg tgagagcgtt
      361 aaacggtcaa agtcgtcaat cactagaact ttatttttta agcacaaatt agccaataac
      421 caagaataaa ctatttctgt ctttatcgct actaattgca ccgccgcaac tactagggaa
      481 ataaacccaa cagggagcat ccatatgggg tgtaaaaatt tacttaatcc tagatttact
      541 gtattggtca ttaaaataga gatgattaca aaaagaaaac tgaatagtaa tgctccccag
      601 tataaaacag gatgtaaact ggcataagca acttcaacaa gacttctttt gtcagtattt
      661 ctccataaat caatagtaac gaacttcttt tttgattgcg actctgttga ttctaaaaac
      721 gttgtttttc ctgatcccca cgaaccattc aaaaagtatg ttttattttc atccaaaagt
      781 ctattaaaat tttctgctgc aatagaggta tcaa
//
LOCUS       DASGBY010000230          791 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.231, whole genome shotgun sequence.
ACCESSION   DASGBY010000230 DASGBY010000000
VERSION     DASGBY010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.231"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..>791)
                     /locus_tag="U1396_002009"
     CDS             complement(<1..>791)
                     /locus_tag="U1396_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="oligosaccharide repeat unit polymerase"
                     /protein_id="HEM5343133.1"
                     /translation="LKIRSIVGGGSIGEIFQEYRRIGVNQLEGKDVETVGGIINQFLK
                     IVEGTGYVAGFTLINNYIYKSKKWQQNVMLVILIGLSILPGLFGAGRTQVLKLLSSFA
                     IMSYVIWQQKYGWNKVMSWKVLGKGTLAAFIGIPAFYYSLALLGRSTTRSLLDYSSNY
                     LSSGMILFSKYIEEPVTRIMWGEESLPNILKVLHALNLSPASTSYNLEFRRLGIGYSN
                     IYSFFRRPYHDFGLLGMYIFVALIALWFSFLYFGKIKYMSQSSVT"
BASE COUNT          286 a          166 c          101 g          238 t
ORIGIN      
        1 tgtaacacta ctttgtgaca tatacttaat ctttccgaaa taaagaaaag aaaaccacag
       61 agctattaat gcaacgaaaa tatacattcc aagtaagcca aaatcatggt acggacgcct
      121 aaaaaatgaa taaatattac tgtatccgat acctaacctt ctaaattcca gattatatga
      181 agttgaagct ggtgataaat ttaaagcatg aagaactttt aaaatattcg gtaaagattc
      241 ctctccccac ataatacgag taacaggctc ttcaatatac tttgaaaata aaatcatacc
      301 actagataaa taatttgatg agtagtctaa aagtgatcga gtcgtactcc gccccagtaa
      361 agcaagcgaa tagtaaaatg ccggaatccc tataaatgct gctaatgtcc cttttcctaa
      421 tactttccat gacatcactt tattccaacc atatttttgt tgccaaatta cgtaagacat
      481 tatcgcaaaa gagcttaaaa gctttaagac ttgagtccta ccagctccaa acaaccctgg
      541 taaaatagat aatcctatca aaataaccaa cattacattt tgctgccatt tcttagactt
      601 ataaatataa ttatttatca atgtgaagcc tgcaacgtat ccagtaccct ctacaatttt
      661 taaaaattgg ttaattattc cacctacagt ttcaacgtct ttcccttcta gttgattcac
      721 accgatacga cgatattctt gaaatatctc tccaatactt cctccaccta caatggaacg
      781 aatttttagg a
//
LOCUS       DASGBY010000231          779 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.232, whole genome shotgun sequence.
ACCESSION   DASGBY010000231 DASGBY010000000
VERSION     DASGBY010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.232"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            53..763
                     /locus_tag="U1396_002010"
     CDS             53..763
                     /locus_tag="U1396_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5343134.1"
                     /translation="MKVPKYQLIQNDLRQQIVSGKFENGDKFYTESELTKLFNVSSIT
                     VIRAVNELVKDGYLVRQQGKGTFVSRSRKGRLVEFSDIEIFPMDKDKVTVLSCEKGNK
                     PDILEKLNLDKNEFYYKIVRVRAAEDTPYIFHNSYIPQRYIQNPDAPLEHYQSIYQRF
                     KLDYNIHMSEEPFVETNEIVSPCPKEVATHLKLKATEPAVLQNKTTTNSTSGEVMEYT
                     ETYKHWKYYKFEITANHR"
BASE COUNT          286 a          162 c          130 g          201 t
ORIGIN      
        1 attttcatca actaattgag tataataagc tgtggaaagg aaggaaataa gtatgaaagt
       61 accgaagtac caacttatac aaaacgactt acgccaacag attgtttctg gcaaatttga
      121 aaatggcgac aaattttaca cagaatctga attaacaaaa ctatttaatg ttagctccat
      181 taccgttatc cgtgcagtaa acgaactagt taaagatggt tacctcgttc gccaacaagg
      241 taaaggaacc tttgtatctc gttcacgcaa aggacgtctt gtagaatttt ctgatattga
      301 gatttttcct atggataagg ataaggttac tgttctctcg tgcgaaaaag gcaataaacc
      361 tgatatcctt gaaaaactaa atcttgacaa gaatgagttt tactataaaa ttgtgcgtgt
      421 ccgcgcagca gaagacactc catacatctt ccacaattca tacatccctc aacgatatat
      481 ccagaatccc gatgctccac tcgagcacta tcaatcaatc tatcaacgct tcaaactgga
      541 ctacaatatc cacatgtccg aggaaccatt tgtagaaacg aatgaaattg tcagcccatg
      601 tccaaaagag gttgccaccc atttgaaatt aaaagcgact gaaccagctg tactacaaaa
      661 caaaacaact actaacagta ctagcggtga agtgatggaa tatactgaaa cttacaaaca
      721 ctggaagtat tacaaatttg aaattacagc caaccatcgc taaaaaaacg cagactaac
//
LOCUS       DASGBY010000232          734 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.233, whole genome shotgun sequence.
ACCESSION   DASGBY010000232 DASGBY010000000
VERSION     DASGBY010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.233"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(72..>734)
                     /locus_tag="U1396_002011"
     CDS             complement(72..>734)
                     /locus_tag="U1396_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5343135.1"
                     /translation="VLLKDELIQRGIVNVEIIPNFRRMDPIDISKVKADDYSIPFKFC
                     TFSRVIKEKGIGDAIEAIEAINTKNKSNLCQLDIYGPIAKEYQVEFQQLLEESSEMIN
                     YVGEVSSDEAVEVLKNYYGVLFPTYWPSEGSAGAISESFFAGVPVIATDWRCNAEMIK
                     DGIDGIIYPGNYAQNLVDGIDWLISKNADIIDIKRSCIEASDYYQPDKHIARLVKLLN
                     VK"
BASE COUNT          236 a          157 c           95 g          246 t
ORIGIN      
        1 ttttcagtaa tataggtttt tcctgtacca ggagggccaa aaaattcaat attcatcaat
       61 aaaggaactc cttattttac atttagtaac ttcactagtc tagctatgtg tttgtcaggt
      121 tgataataat ccgatgcttc tatacaagaa cgctttatat caataatatc tgcattctta
      181 gaaataagcc aatctattcc atcgactaaa ttctgagcat agtttcctgg atatatgatc
      241 ccatcaatac catcttttat catttcagca ttacaacgcc aatcagttgc tataacaggt
      301 actccagcaa aaaaactttc cgatattgcc ccagcactac cttcactcgg ccaataggta
      361 ggaaaaagga caccatagta attctttaaa acttccaccg cctcatctga agaaacttca
      421 ccgacataat taatcatctc tgatgattct tcaagtaact gctgaaattc tacttgatac
      481 tctttagcaa taggtccata tatatccaat tgacagagat tgctcttatt ttttgtattg
      541 attgcctcga ttgcctctat agcatcacca attccttttt ctttaataac tctcgaaaat
      601 gtacagaatt tgaaaggaat agaataatca tctgccttta ccttagaaat atctatcggg
      661 tccattcgac gaaaattggg aattatctca acattcacaa tacctctttg aattagttca
      721 tctttcaata atac
//
LOCUS       DASGBY010000233          733 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.234, whole genome shotgun sequence.
ACCESSION   DASGBY010000233 DASGBY010000000
VERSION     DASGBY010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.234"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(105..178)
                     /locus_tag="U1396_002012"
     tRNA            complement(105..178)
                     /locus_tag="U1396_002012"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(142..144),aa:Arg,seq:acg)
     gene            complement(197..280)
                     /locus_tag="U1396_002013"
     tRNA            complement(197..280)
                     /locus_tag="U1396_002013"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(244..246),aa:Leu,seq:taa)
     gene            complement(288..359)
                     /locus_tag="U1396_002014"
     tRNA            complement(288..359)
                     /locus_tag="U1396_002014"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(325..327),aa:Gly,seq:gcc)
     gene            complement(372..444)
                     /locus_tag="U1396_002015"
     tRNA            complement(372..444)
                     /locus_tag="U1396_002015"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(409..411),aa:Thr,seq:tgt)
     gene            complement(459..540)
                     /locus_tag="U1396_002016"
     tRNA            complement(459..540)
                     /locus_tag="U1396_002016"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(504..506),aa:Leu,seq:tag)
     gene            complement(544..616)
                     /locus_tag="U1396_002017"
     tRNA            complement(544..616)
                     /locus_tag="U1396_002017"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(581..583),aa:Lys,seq:ttt)
     gene            complement(662..733)
                     /locus_tag="U1396_002018"
     tRNA            complement(662..733)
                     /locus_tag="U1396_002018"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(699..701),aa:Asp,seq:gtc)
BASE COUNT          189 a          216 c          154 g          174 t
ORIGIN      
        1 gaacctgcga caccttggtc ccaaaccaag tactctacca agctgagcta cttcccgata
       61 ctattaaaaa taaagctccc ctaacgtctc cattaagcga gtgatgcacc ctagaggatt
      121 cgaacctcta accgcctgat tcgtagtcag gtactctatc cagttgagct aagggtgcta
      181 actattataa tcttcatgcc gaggaccgga atcgaaccgg tacgatgttg ccatcgcagg
      241 attttaagtc ctgtgcgtct gccagttccg ccaccccggc ctctcaaagc gaacgacggg
      301 attcgaaccc gcgaccccca ccttggcaag gtggtgttct accactgaac tacgttcgca
      361 atctttccta atgccggcta catgacttga acacgcgacc ctctgattac aaatcagatg
      421 ctctaccaac tgagctaagc cggcctattt ctattctatg cgggttaagg gacttgaacc
      481 cccacgcccg aaagcgccag atcctaaatc tggtgcgtct gccaattccg ccaaacccgc
      541 atatgactcg tgctgggctc gaaccagcga cccattgatt aaaagtcaat tgctctacca
      601 actgagctaa cgagtcttta cttaattata ttacttgaaa catatgattg attcgtttca
      661 acggtcccga cgggaatcga acccgcgatc ttcgccgtga cagggcgacg tgataaccgc
      721 tacactacgg gac
//
LOCUS       DASGBY010000234          678 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.235, whole genome shotgun sequence.
ACCESSION   DASGBY010000234 DASGBY010000000
VERSION     DASGBY010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.235"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..638
                     /locus_tag="U1396_002019"
     CDS             <1..638
                     /locus_tag="U1396_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucosamine-6-phosphate isomerase"
                     /protein_id="HEM5343136.1"
                     /translation="PVGQYPHFVRLVNQFKIDLSNVWFINMDEYLLEDLHWIDVVHPL
                     SFRGFMQKNVYSQIHPTLIMSEEQRIFPDPLDIDSISNKIKELGKIDLCIGGIGLNGH
                     IAFNEPDSTLTVQEFLKLGSRVLPISVETKVMNGLTVLKGAVEEVPNYCVTIGMSEIF
                     QAKKIRLAVFRDWHHAVIRKTVCSKPDTGFPSTLMQIHTNCSIYLNESLAN"
BASE COUNT          228 a          100 c          126 g          224 t
ORIGIN      
        1 gaccagttgg tcagtatccg cattttgtta gattagtgaa tcaatttaag attgatttgt
       61 ctaatgtttg gtttattaac atggatgaat atttgttgga agatttgcat tggatagacg
      121 tagtacaccc tcttagtttt cgaggattta tgcagaaaaa tgtctacagt caaatacatc
      181 caactcttat tatgtcagaa gaacaaagaa tttttccaga tcctcttgat atagactcga
      241 tttcaaataa aatcaaagaa ttaggtaaaa tcgacttatg tattggtgga attggcctaa
      301 atgggcacat tgcattcaat gaaccggatt caacattaac agttcaagaa tttttaaaat
      361 tagggtcgcg agtgttacct atttctgtcg agacaaaggt tatgaatggt ttgacggtat
      421 taaaaggagc tgtagaagaa gtgcctaatt attgtgtaac aataggaatg agcgagattt
      481 ttcaagcgaa aaaaattcga cttgcagttt ttcgtgattg gcatcatgcg gtcatacgta
      541 aaacagtttg ttctaagcca gatactggat ttccatcaac tctaatgcaa atccatacaa
      601 attgttctat ctatctaaat gaatcgttag caaattaacc tatgttcaaa cacatacaga
      661 atatatataa gtttatta
//
LOCUS       DASGBY010000235          638 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.236, whole genome shotgun sequence.
ACCESSION   DASGBY010000235 DASGBY010000000
VERSION     DASGBY010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.236"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            245..592
                     /gene="rplS"
                     /locus_tag="U1396_002020"
     CDS             245..592
                     /gene="rplS"
                     /locus_tag="U1396_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEM5343137.1"
                     /translation="MNPLIQSLTEGQLRTDIPSFRPGDTVRVHAKVVEGNRERIQIFE
                     GVVISRKGQGISEMYTVRKISGGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRA
                     LQGKAARIKEIRR"
BASE COUNT          194 a          119 c          137 g          188 t
ORIGIN      
        1 cagcctcttt tcatttttct ccaataggaa tctgtattat taacactctt cgaaaatcaa
       61 actcagacct tgttgactta acttgtaaaa gaagcggtgt gattgaccat gataaattta
      121 tcaaaatgct ttacataggt gattacttgg tgtataatat agtctgtgtg taatggacgc
      181 acaaaaatac agtttatccg ctgggtttaa aagcacctat gattgacaaa gataggagaa
      241 taaaatgaat ccattgatcc aaagtttgac agaaggtcaa cttcgtactg acatcccttc
      301 attccgtcct ggtgacactg tgcgtgttca cgctaaggtt gtcgaaggta accgcgaacg
      361 tatccagatt ttcgagggtg ttgttatctc tcgtaaaggt caaggcatct cagaaatgta
      421 cactgtacgt aaaatctctg gtggtgtagg tgttgaacgt acattcccaa tccacactcc
      481 acgtgttgat aagattgaag tagtacgtta cggtaaagta cgtcgtgcta aattgtacta
      541 cctacgtgca ttgcaaggta aagcagcacg tatcaaagaa atccgtcgtt aagatagttc
      601 tacagactat tttggtcgga gaatgggagg cagcgaaa
//
LOCUS       DASGBY010000236          627 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.237, whole genome shotgun sequence.
ACCESSION   DASGBY010000236 DASGBY010000000
VERSION     DASGBY010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.237"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..>627
                     /locus_tag="U1396_002021"
     CDS             <1..>627
                     /locus_tag="U1396_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GBS Bsp-like repeat-containing protein"
                     /protein_id="HEM5343138.1"
                     /translation="AKPTGTITIENRNDAQGTFDVRVTNVSSPKDIASVILPTWSQTD
                     DLRWYEATRQSDGSYKLTVNKKDHKYRTGTYTVHLYYKDSSGGLTGAGGTTTHLSEVK
                     PTGTITIENRNDAQGTFDVRVTNVSSPKDIASVLLPTWSQSDDIRWYEATRQSDGSYK
                     LTVNKKDHKYRTGTYTVHLYYKDSNGGLTGAGGTTTHLSEAKPTGTIT"
BASE COUNT          202 a          124 c          134 g          167 t
ORIGIN      
        1 aagcgaagcc aacaggtaca atcacaattg aaaatcgtaa tgatgcccaa ggtacctttg
       61 atgttcgtgt tactaatgtt tcatcaccga aagatatagc aagtgttatc ttacccactt
      121 ggtcacagac ggatgattta cgttggtatg aagctactcg tcagtcagat ggcagctata
      181 agttaactgt taataagaag gaccataagt atcgtacagg tacctacacg gttcacttat
      241 attataagga ctcaagtggt ggcctaacag gtgcaggtgg tacaacgact catttatcag
      301 aagtgaagcc gacaggtacc atcacaattg aaaatcgtaa cgatgcccaa ggtacctttg
      361 atgttcgtgt tactaatgtt tcatcaccga aagatatagc aagtgttctc ttacctacct
      421 ggtcccagtc agacgatata cgttggtatg aagctactcg tcagtcagat ggcagctata
      481 agttaactgt taataagaag gaccataagt atcgtacagg tacctacacg gttcacttat
      541 attataagga ttcaaatggt ggtttgacag gtgcaggtgg aacaacaact catttatcag
      601 aagcgaagcc aacaggtaca atcacaa
//
LOCUS       DASGBY010000237          601 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.238, whole genome shotgun sequence.
ACCESSION   DASGBY010000237 DASGBY010000000
VERSION     DASGBY010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.238"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            42..386
                     /locus_tag="U1396_002022"
     CDS             42..386
                     /locus_tag="U1396_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343139.1"
                     /translation="MKQANSKLAALTLITTLAVTSVIGTTVHAEEKVTADQTVAGKHK
                     PITDEQLQKAIGDRNPNNIKIQAKFENTNFKNQGITFIGKAEIPSKSSENSSWFWNLW
                     TRFTTFVKGIFS"
BASE COUNT          216 a           91 c          106 g          188 t
ORIGIN      
        1 tcatattaaa aaaaataata ctttgtaaaa ggagacattt catgaaacaa gctaattcaa
       61 aactagcagc tttaacactc attacaactc ttgcagttac ctctgttatt gggacaacgg
      121 tgcatgctga ggagaaagta actgctgatc agactgtagc aggaaaacac aaaccgatta
      181 cggatgagca gcttcaaaaa gcgattggag atagaaatcc aaataatatt aagatacaag
      241 ctaaatttga aaataccaat ttcaaaaatc aaggaataac ttttattgga aaagctgaaa
      301 ttccatctaa atcttctgaa aactcttcat ggttttggaa tctttggact cgttttacaa
      361 cttttgtcaa aggtattttt agctaagatt tctatttttc gttgacttca tatggataga
      421 gaacagtggt tcatgtgagc ctttagtcaa atgaaaagcg tataaaatat tggagagatc
      481 taggcatcta aactagagat tgtgcaagaa attatgtaat agacctcaca ttttttgcga
      541 atgagatgtt gacacgaatt ccatatttct tgagtctcgg ttgtaatttt tcttagataa
      601 a
//
LOCUS       DASGBY010000238          553 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.239, whole genome shotgun sequence.
ACCESSION   DASGBY010000238 DASGBY010000000
VERSION     DASGBY010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.239"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(<1..325)
                     /locus_tag="U1396_002023"
     CDS             complement(<1..325)
                     /locus_tag="U1396_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343140.1"
                     /translation="MKRIVTKRSYKVGLCAMALALLMSTAGGVTAGAQDYHVESSGEL
                     KPMSEGVFMKLESSSNFIENEGIVVKSISNQNTNPNNLNESWYWKFWKKVKLFFKRFR
                     EGFGIQ"
BASE COUNT          203 a          108 c           71 g          171 t
ORIGIN      
        1 tttgtatacc aaaaccttca cgaaatcttt tgaaaaacag tttgactttc ttccaaaatt
       61 tccaatacca agactcgttc aaattatttg gattagtatt ttgattacta atagatttca
      121 ccacgattcc ttcattttca atgaaattag atgaagattc caatttcata aacactcctt
      181 cgctcattgg ttttaattcg cctgatgatt cgacatgata gtcttgtgca cctgcagtta
      241 cgccacctgc agtgctcatc aacagagcaa gagccatagc acacagacca actttataac
      301 tacgttttgt tacaatacgt ttcatttttg aaatgtctcc tttatacaat attcgccctt
      361 ttctagacaa tgtagtgcca gtatagcaca aaaaaataac gtaaattcca actttagaga
      421 aagattagat aaaaaaccat taaattccaa aaaataaaaa tattaatata aaaatcagga
      481 aataggatac gctccgttca agagaacctt gtctcgaata agcgaagtaa taaaaagaat
      541 atccctaaaa aat
//
LOCUS       DASGBY010000239          509 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.240, whole genome shotgun sequence.
ACCESSION   DASGBY010000239 DASGBY010000000
VERSION     DASGBY010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.240"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(16..330)
                     /locus_tag="U1396_002024"
     CDS             complement(16..330)
                     /locus_tag="U1396_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343141.1"
                     /translation="MKQLVTKRSYKIGLSAMALVLLMTTAGGATAHASTGTYSVETRG
                     DAEVYRLLETPAGSFTQGNVVLEPVNNSTTKPSETKSWFDSFWSSVKTFWEAICRGVG
                     WC"
BASE COUNT          181 a          113 c           70 g          145 t
ORIGIN      
        1 tagtaaacat tctacttaac accatccaac tccacgacag attgcttccc aaaatgtttt
       61 tacactactc caaaaagaat caaaccatga tttggtttca gatggtttag ttgtagaatt
      121 attcacaggt tccaaaacta cgttcccctg tgtaaaagac cccgccggag tttccaacag
      181 cctatacact tcggcatcac ctcgagtttc gacactatag gtacccgtac ttgcatgtgc
      241 agtggcacca cctgcagtgg tcattagcaa gaccaaagcc atagcactca aaccaatttt
      301 ataactacgt tttgttacaa gttgtttcat tgttgaaata tctcctttat acgatattcg
      361 tctctacaaa tgatagtata gcacaaacag acaactcaaa ttccaacttt agaaaaaggt
      421 tagataaaaa actataaaac tccaagatat gcatatatta atacaagaac aaaaatacac
      481 atgcaatatt atatttatgg ttcaaaaaa
//
LOCUS       DASGBY010000240          508 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.241, whole genome shotgun sequence.
ACCESSION   DASGBY010000240 DASGBY010000000
VERSION     DASGBY010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.241"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            189..>508
                     /locus_tag="U1396_002025"
     CDS             189..>508
                     /locus_tag="U1396_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 family protein"
                     /protein_id="HEM5343142.1"
                     /translation="MKKVMKVIIGILLVIVIGIGGIGYMQHKEHEKMVAIATSEEARK
                     VYEDKIRREESVAFTNQGVIRTYKIDEASLEYNPMGGLMVDVFINDDREAYISFNLID
                     NGDGT"
BASE COUNT          187 a           59 c          122 g          140 t
ORIGIN      
        1 ttagaaagtc aaatccaagc agggatcgag cagaaagtaa cggaagacca gacattagca
       61 cagaggatac aagaatggac caattgaaac ttgtagcctt ttcttatata tttaaaccac
      121 taaatttatg ttatactatg aggtaagaaa gcgtcttact tgataggatt tcataaagga
      181 ggtctaggat gaaaaaagta atgaaagtta ttatcggcat tttgttagta atcgtgattg
      241 gaataggagg aattggatat atgcaacaca aggaacatga gaaaatggtc gctatcgcta
      301 ctagcgagga ggcgaggaag gtttatgaag ataaaattag aagagaggag tcagttgcct
      361 ttactaatca aggggtcatt cgaacttata aaattgatga ggctagttta gaatataatc
      421 caatgggagg acttatggtt gacgtattta taaatgacga tagagaagca tatattagtt
      481 ttaatttgat tgataacgga gatgggac
//
LOCUS       DASGBY010000241          494 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.242, whole genome shotgun sequence.
ACCESSION   DASGBY010000241 DASGBY010000000
VERSION     DASGBY010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.242"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            245..494
                     /gene="tnpA"
                     /locus_tag="U1396_002026"
                     /pseudo
     CDS             245..494
                     /gene="tnpA"
                     /locus_tag="U1396_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT          162 a           86 c          105 g          141 t
ORIGIN      
        1 taacctgcta tagataatcc tttaatagtt tgagactaga atggtagtat tctagataga
       61 aataagcaac gaggttcccc cgttgcttat tgtatttatg tgacttttag tccgtcgcgc
      121 tccgtaaggt gcgtgacaaa taaaccaccc gctatgcggg tgcgcgacga aggttatacc
      181 aaaaaactct aaacgcgata caataaaggt gttcaagcca attgtaaagc gagaggagaa
      241 aagtatggca caaaaggcac atagtttatc acatacaaag tggttgtgtt ctaccacatt
      301 gtcttcacac ctaagtatag acgaaaaatc atctataatc aatatcgaag tagtttggga
      361 gaaatattcc gacatttgtg tagttataaa ggcgtagaaa ttatcgaagg acatctgatg
      421 ccggatcatg ttcatatgtt agtcagtatt cctccgcgat taagtgtatc aagctttatg
      481 ggatatttaa aagg
//
LOCUS       DASGBY010000242          459 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.243, whole genome shotgun sequence.
ACCESSION   DASGBY010000242 DASGBY010000000
VERSION     DASGBY010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.243"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(54..371)
                     /locus_tag="U1396_002027"
     CDS             complement(54..371)
                     /locus_tag="U1396_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343143.1"
                     /translation="MELVLPNNYVALEQEEMMYLDGGDWNTFKNNIKGLAASSAGFRD
                     AARQVGLWGAIWSARVYSYSYVVSVLAPILGSVTAANFVLGAIGVATVGAVSYALWNY
                     KYY"
BASE COUNT          163 a          105 c           58 g          133 t
ORIGIN      
        1 taatccgtac agcgaaacca ttaataaaaa tcttaaaaaa atgagcatat taatcaataa
       61 tatttatagt tccatagagc ataactaacg gctcctactg tagctacgcc aatagctcct
      121 aaaacaaaat tagccgcagt tactgaaccg agtattggtg ccaaaacaga aactacataa
      181 gaatagctat acactctcgc agaccaaatt gccccccata agcctacttg tcgagcagca
      241 tctctaaatc ctgctgaaga agctgccaaa ccttttatat tgtttttaaa tgtattccaa
      301 tctcccccat caagatacat catttcttct tgttcaagag ccacataatt atttggtagt
      361 actaattcca taaaaattct cctttaaaaa tcatggttag acgcaatcct ctaactggat
      421 ataatcaaca tttctcattc tttacctaga tagcagaag
//
LOCUS       DASGBY010000243          447 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.244, whole genome shotgun sequence.
ACCESSION   DASGBY010000243 DASGBY010000000
VERSION     DASGBY010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.244"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..337
                     /locus_tag="U1396_002028"
     CDS             <1..337
                     /locus_tag="U1396_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEM5343144.1"
                     /translation="FRDLKYSIGLTHFHAKKKEGILQEIYARFINFNVCKWLTSHVAI
                     KTSKLKQTYKICFSDAVYACRKFLRNKLTSFQLETYIAKHLSIIRPNRTFQRKIKSKA
                     PVSFTYRVT"
BASE COUNT          156 a           92 c           65 g          134 t
ORIGIN      
        1 ttttcgtgac ctaaaataca gtatcggtct gactcatttt catgcaaaaa agaaggaagg
       61 gattctccaa gaaatctacg ctcgctttat caattttaat gtttgtaaat ggctaacctc
      121 acacgttgct attaaaacat caaagttaaa acagacttat aaaatttgtt tttcagacgc
      181 tgtttatgcc tgtcgaaaat ttcttagaaa caaactcact tccttccaat tagaaaccta
      241 cattgccaag catttatcca tcatccgacc caatcgaacg ttccaaagaa agataaaaag
      301 caaggcacct gtaagcttca cttatagagt aacataatag ttgaaaaata gggataaaaa
      361 acctcctttt tgtgcgccct aaatacaaaa actattcccg ttttgtcatg aactgctcag
      421 acgagaatag tttctttagc tgcttaa
//
LOCUS       DASGBY010000244          445 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.245, whole genome shotgun sequence.
ACCESSION   DASGBY010000244 DASGBY010000000
VERSION     DASGBY010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.245"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            1..445
                     /locus_tag="U1396_002029"
                     /pseudo
     CDS             1..445
                     /locus_tag="U1396_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611513.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          169 a           79 c          107 g           90 t
ORIGIN      
        1 cgaggaactc tcccaaactg gatagcacaa tacaagaaaa acgggtatac tattcttgag
       61 aaaacaagag ggaggccacc aaagatgggg cgtaaaccaa agaaaacctg ggaagagatg
      121 acggagttag agcgacttca ggaggaaaat gaacggctta gaacggagaa tgtctatcta
      181 aaaaagttga gagcgcttcg tttaagggac gaagccagag aacaagaaag gctcaaacag
      241 ttagagagat ggtcgcagaa ggatttcgac tagatgtact actgacgatt gctcaattag
      301 ttccttctac ctatcattat caagtcaaac aactggacaa accagataaa gataaggact
      361 taaaagctga aattcaagcc atttatgatg aaaataaggg aaattatggc taccgtcgca
      421 ttcaccttga gctaagaaat cgtgg
//
LOCUS       DASGBY010000245          393 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.246, whole genome shotgun sequence.
ACCESSION   DASGBY010000245 DASGBY010000000
VERSION     DASGBY010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.246"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            23..346
                     /locus_tag="U1396_002030"
     CDS             23..346
                     /locus_tag="U1396_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343145.1"
                     /translation="MKRFLEVIFEQITVFLEHGKAPKSIEPDSKEEIKNNLELALYKK
                     AAVHVIYGDRSFTGDIVKYDTDCQRIIMKNFKRQVTSIIKIEDIKKVTLVPDSIKTSQ
                     QQTKG"
BASE COUNT          141 a           69 c           76 g          107 t
ORIGIN      
        1 tcaagtttga aaggattatg ccatgaagag gtttttagaa gttattttcg agcagatcac
       61 cgtcttttta gaacatggca aagctcctaa gtctattgag ccagatagca aggaagaaat
      121 caagaataac ttggagctgg ctttatataa aaaagctgca gtccatgtca tctatggcga
      181 tcgtagtttc acaggtgaca ttgtaaaata tgataccgat tgccaacgga ttatcatgaa
      241 aaatttcaaa cgtcaggtta ccagcattat aaaaatcgag gacatcaaaa aagtcacctt
      301 ggttccagat agcatcaaga cttctcaaca acaaacaaaa ggctgaaatt tcagccttgc
      361 agattgaaga aaaagtccat tttggacaat ttt
//
LOCUS       DASGBY010000246          391 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.247, whole genome shotgun sequence.
ACCESSION   DASGBY010000246 DASGBY010000000
VERSION     DASGBY010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.247"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            complement(15..248)
                     /locus_tag="U1396_002031"
     CDS             complement(15..248)
                     /locus_tag="U1396_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEM5343146.1"
                     /translation="MELRSREGGDIWLFGGASLVQDCLEAGVIDHLIIGIIPTILGDG
                     IPLFASLLEEKKLLLVESTVTDGIAMLRYDIRR"
BASE COUNT          119 a          110 c           55 g          107 t
ORIGIN      
        1 atagctcgcc ttttttacct tctaatatca taacgtaaca tagcaattcc atctgtgaca
       61 gtggactcta ccaagagcaa tttcttttct tccaaaagtg aggcgaaaag tggaataccg
      121 tcacccaaaa tagtaggaat aatcccaata ataaggtgat caatcactcc cgcctctaaa
      181 cagtcctgaa ccagacttgc tccaccaaac aaccaaatat ctccaccttc tctagaacga
      241 agttccataa tctccccgat gatgtccctt acgaaacgca cattaccata gtccgtctgc
      301 tcggtacgac tcgcaacgat aaattgcttt tcctgatatc cttcaatcat ttccaacgga
      361 caatcttcta atgattttct ccccatcggg a
//
LOCUS       DASGBY010000247          361 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.248, whole genome shotgun sequence.
ACCESSION   DASGBY010000247 DASGBY010000000
VERSION     DASGBY010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.248"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            30..>361
                     /locus_tag="U1396_002032"
     CDS             30..>361
                     /locus_tag="U1396_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5343147.1"
                     /translation="MEQLNLITNFLRIKDKNITITDEYDMGTHLELHGYLDYMAPKCP
                     ECKGQMAKYDYQKASKIPYLETAGYPLLIRLKKRRFKCKECGKMAVAETPLVKKNHQI
                     SVAVSQKIA"
BASE COUNT          128 a           76 c           62 g           95 t
ORIGIN      
        1 gctcaaacta tcattttaga aagactcata tggaacaact aaatcttatc acaaattttc
       61 tcagaattaa agacaaaaat atcactatca ctgatgaata tgatatggga actcacttag
      121 aactccacgg ttacttggat tacatggctc ctaaatgtcc agaatgcaag ggacaaatgg
      181 ctaagtacga ctaccagaaa gcatcaaaaa ttccctacct agaaactgct ggttatccac
      241 tccttatccg ccttaaaaag cgtcgtttca agtgtaaaga atgtgggaaa atggcggttg
      301 ctgaaactcc tcttgttaag aaaaaccatc aaatatctgt cgctgttagc cagaagatcg
      361 c
//
LOCUS       DASGBY010000248          350 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.249, whole genome shotgun sequence.
ACCESSION   DASGBY010000248 DASGBY010000000
VERSION     DASGBY010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.249"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            160..300
                     /locus_tag="U1396_002033"
     CDS             160..300
                     /locus_tag="U1396_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5343148.1"
                     /translation="MIGHAINGIEGAMFAMLYEADRTYYRCQHCGYRFSRKENRFISN
                     IE"
BASE COUNT          117 a           69 c           55 g          109 t
ORIGIN      
        1 atcggtccga ctattctcat agtactaata atctcttata gcatctatcg cagatgccat
       61 cctaataata tggacactaa acaagcgttc aaatgtccaa aatgtaagtc aatacaaact
      121 tacgttccaa cacaaaaaag atattctcgt aaagccggta tgattggtca tgcaatcaat
      181 ggcatagagg gagctatgtt tgcaatgctc tatgaagctg atcggactta ttatcgttgt
      241 caacattgcg gttaccgatt ttctagaaag gagaatcgtt ttatttctaa catcgaataa
      301 cctccctaat tttaatagaa atatacaccg atattttatg caatcttatc
//
LOCUS       DASGBY010000249          339 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.250, whole genome shotgun sequence.
ACCESSION   DASGBY010000249 DASGBY010000000
VERSION     DASGBY010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.250"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..168
                     /locus_tag="U1396_002034"
     CDS             <1..168
                     /locus_tag="U1396_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5343149.1"
                     /translation="TTTTEEPMTTITSEKTRKTALPSTGDKGNIWVAIAGFVALITIV
                     VMVYYRKSKNA"
BASE COUNT          123 a           48 c           58 g          110 t
ORIGIN      
        1 acaacgacta ccgaggagcc aatgactaca ataactagtg aaaaaactag aaaaacagct
       61 cttccatcta caggtgacaa aggtaatatt tgggttgcta tagctggttt tgttgctctt
      121 attacaatag ttgtaatggt atattaccgt aaatctaaga atgcttaatc atgaataagt
      181 ggctaagcta atgaatgata taagagagaa cattgcttct ctctttttta aaaggggcag
      241 atacagattc cagtattgta gagagtttat tatctactcc tcttaagaaa tatcaaaaat
      301 gaggtaattt attaatgaaa ttaactttat taattactt
//
LOCUS       DASGBY010000250          302 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.251, whole genome shotgun sequence.
ACCESSION   DASGBY010000250 DASGBY010000000
VERSION     DASGBY010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.251"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            49..117
                     /locus_tag="U1396_002035"
                     /pseudo
     CDS             49..117
                     /locus_tag="U1396_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          118 a           59 c           45 g           80 t
ORIGIN      
        1 gctatttttg atttttattg agtatgaaaa acaacaaaac tcacaatttc caacaccaaa
       61 tcagaaacaa ctaacaatct catcaaagtc attaaaagaa atgcctttgg attcaggaaa
      121 atgaaaacta gaaaaacgga ttttgatgct ttgaacagtg aaaagctgag gagagctctt
      181 ttcagctcat ctcctaaaaa caagaaagag agaacgaatt tcgtcctctc taggtgttag
      241 cttttcatct acccactaca gttgacaaag agccaaaaaa aagaacattg ctactctctt
      301 ac
//
LOCUS       DASGBY010000251          282 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.252, whole genome shotgun sequence.
ACCESSION   DASGBY010000251 DASGBY010000000
VERSION     DASGBY010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.252"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..>282
                     /locus_tag="U1396_002036"
     CDS             <1..>282
                     /locus_tag="U1396_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5343150.1"
                     /translation="VYSRRLQSFLDEHGYAYTRLNPLEAKKQLDSLRVRKTDQIDAEK
                     LAQSQFVLNRKTTYVQEEIYQNLRDLSRFYQNLTEDIVRAKNRLHKALQV"
BASE COUNT           88 a           69 c           56 g           69 t
ORIGIN      
        1 gtctattctc gtcgtcttca atcttttctg gatgaacatg gctacgctta tacacgactc
       61 aatcccttag aagccaagaa gcaactggat agcttgcgtg tgagaaaaac agatcaaatt
      121 gacgccgaaa aactagctca atctcagttt gtactgaatc gtaaaacgac gtatgtccaa
      181 gaagaaatct accaaaactt gcgggatctc agccgtttct atcagaatct gaccgaggac
      241 atcgttcgag ctaaaaaccg cctgcacaag gccttacagg tc
//
LOCUS       DASGBY010000252          266 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.253, whole genome shotgun sequence.
ACCESSION   DASGBY010000252 DASGBY010000000
VERSION     DASGBY010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.253"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
BASE COUNT          127 a           54 c           40 g           45 t
ORIGIN      
        1 tcggaactga aaatgatata aaatcattcc aagacagatg gtaaaaatac acagtagatg
       61 caaaaataca agtagaaaat ttaattgaaa ctggtaaccc caagaaataa tcccaacagg
      121 ctctaaaaaa gacaaatcta gcaaggcaaa aaacaacccg cccaaaatca tatagaggca
      181 agggaaaaat accccaacaa ttttttgacg aaaagcaaga gaactagcta ggccaaatac
      241 tgcaaaaacg ctaccaaaaa tcccat
//
LOCUS       DASGBY010000253          260 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.254, whole genome shotgun sequence.
ACCESSION   DASGBY010000253 DASGBY010000000
VERSION     DASGBY010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.254"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            60..>260
                     /locus_tag="U1396_002037"
     CDS             60..>260
                     /locus_tag="U1396_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5343151.1"
                     /translation="MLSKYVGRQTSSIENDITKTRNHSRQRGNIMRVVFGIDVSKVSS
                     EVAILVNGEKVHNYTMSNDAIGF"
BASE COUNT           90 a           45 c           61 g           64 t
ORIGIN      
        1 agggcttttt gacgctagac gtcgcaacaa aaactggcaa gacacctgtt ttagaaagaa
       61 tgttatcaaa gtatgtggga cgccagacgt cgagtattga aaatgacatc actaaaacaa
      121 ggaatcattc aagacaaaga ggtaatatca tgcgagtagt atttgggatt gacgtgagta
      181 aagtaagttc agaagtagcc attctagtca acggcgagaa ggttcataac tacaccatgt
      241 ccaatgatgc cattggcttt
//
LOCUS       DASGBY010000254          260 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.255, whole genome shotgun sequence.
ACCESSION   DASGBY010000254 DASGBY010000000
VERSION     DASGBY010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.255"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            60..260
                     /locus_tag="U1396_002038"
                     /pseudo
     CDS             60..260
                     /locus_tag="U1396_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
BASE COUNT           84 a           45 c           63 g           68 t
ORIGIN      
        1 gaactctttt gacgctagac gtcgcaacaa aaactggcaa ggcacctgtt ttaggaagaa
       61 tgttatcaaa gtatgtggga cgctagacgt cgagtattga aaatgacatc tctaaaacaa
      121 ggaatcattc aagacaaaga ggtaatatca tgcgtgcagt tttcgggatt gatgtgagta
      181 aggcaagttc agaagtggcc attctagtca atggtgagaa agttcatggc tataccatat
      241 ccaatgacgc cttaggcttt
//
LOCUS       DASGBY010000255          233 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.denovo.256, whole genome shotgun sequence.
ACCESSION   DASGBY010000255 DASGBY010000000
VERSION     DASGBY010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.denovo.256"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            <1..>233
                     /locus_tag="U1396_002039"
     CDS             <1..>233
                     /locus_tag="U1396_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HEM5343152.1"
                     /translation="AQGLVKVAETTHQTLEKETTSTLTEVNEVYSSLGNVPFGFILSP
                     DEVRQAYSSAGVDYHSLVGDSTNQVEKFITRSN"
BASE COUNT           72 a           53 c           52 g           56 t
ORIGIN      
        1 gctcaaggac tggttaaggt tgcggaaacc actcaccaaa cactcgaaaa agagaccact
       61 tccaccctta cagaagtaaa tgaagtctac agtagcttag gaaatgtccc ttttggcttc
      121 attttgagtc ctgatgaagt gagacaggcc tacagcagtg caggtgttga ctatcatagt
      181 ctggtaggag atagcaccaa tcaagtcgag aagtttatca ctcgctccaa tca
//
LOCUS       DASGBY010000256         5226 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS16Z0004
            SAMEA8942239-rid19043043.guided.127, whole genome shotgun sequence.
ACCESSION   DASGBY010000256 DASGBY010000000
VERSION     DASGBY010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942239
            Sequence Read Archive: ERR6131175
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846346.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846346.1
            Genome Coverage       :: 331x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 04:09:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,043
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 41 of 72
            Pseudo Genes (incomplete)         :: 25 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5226
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942239-rid19043043.guided.127"
                     /isolate="SS16Z0004"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2016"
     gene            147..1874
                     /locus_tag="U1396_002040"
     CDS             147..1874
                     /locus_tag="U1396_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5343153.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEMTLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLCIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKATQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENIALGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            1874..3613
                     /locus_tag="U1396_002041"
     CDS             1874..3613
                     /locus_tag="U1396_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5343154.1"
                     /translation="MTILGFLLKQIRRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSAQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     YGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEEVEDDCDRIL
                     EVEQGQVVFEHVNFSYEENRPVLKDITIRAEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            3667..4362
                     /locus_tag="U1396_002042"
     CDS             3667..4362
                     /locus_tag="U1396_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5343155.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHIEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMEERLGMSGEDICYLGDSFENDVVGAKAANWKAIWFNHRKRVEPTAPYQADKVV
                     TDWDELVEVIQSF"
     gene            4516..5085
                     /locus_tag="U1396_002043"
     CDS             4516..5085
                     /locus_tag="U1396_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002925829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM5343156.1"
                     /translation="MELPMTQAFFPIHTLETVSPELRENLATVKKNNGGYIPNLIGLL
                     ANSPTALETYQTVSGINRRSSLNPTEREVVQITAAVANGCGFCVAGHTAISIKQVKMP
                     DVILQALRQGTPIETDAKLDALARFTLAVIHEKGKVEQPLLEEFFQEGYTAENALDVV
                     LGVSLATLCNYANNLINTPINPELQAYAL"
BASE COUNT         1481 a          942 c         1218 g         1585 t
ORIGIN      
        1 ttgtcaactt gccttgatga actccagttc tatcttcgac atcgttttct aggctacttt
       61 tgattttcat tgagtataac gtctatcaat tgttgcttat tgaataaagc ggcaaatgat
      121 aggttataga tttgtaaagg agatatatgt ttcgattaat ttttgactat atcaagcgtc
      181 ataagtggct ctatctattg gttgctgtga ccttgattat ttatgacgcc acacttttgc
      241 taccaacgca aatcattcag cggatggtag atatactaac caagaatgaa ttaacacagg
      301 ccatattggt tcaggagatg accttattgt tattggtaac agtactgaac tatgcaacag
      361 ccttcatttg gcatctgaaa ttatttcagg cttctgtcaa tttcaagttt gatatgcagc
      421 aacgtgcctt taaaaaatta gtgaccatgc ggactccatt ttatgaaaaa ttccgctcag
      481 gagatgtcat gactcgtttt tcaacggatg tggatggcct gatggagatg gtgggttacg
      541 gtcttatgat tgtcgtctat gcaggcggta tgttggcttt tatcattccc acgatgttct
      601 ttattgattg gaaaatttcg ctagtagctt tactaccgat gctgttcatg acactatgta
      661 tattttttat cgggagaaaa caagataagg cgattgatgc caatagagaa gctgtagccc
      721 agctcaataa tgaagttttg gaggtcatcg aaggcattcg agtgactcgg gcttatagta
      781 aaaaagcaac tcaaaaggct caatttcaag ctcgtaccaa gcaattggct caaggtgggg
      841 atcgcatcac ttccttgcaa tcattgtata atccattagc cacagtctgt ttgggattgt
      901 ctactatttt cgtgcttctc atgggggcac aagccgtgaa agcagggcaa ctgaccttgg
      961 gacaagtaat tgcccttcaa ttgtatgtcg gttcgctttt ggagccgttt tggacactgg
     1021 cagatttcat ccttgtttat cagactggta agacatcttt cgaaaaactg caagagctga
     1081 ttgagacggg tgatgatttg gaggctgatg gttctaagga aattgcagag ctgtctagta
     1141 tttccttcaa aaattatagc tttagttatc cacaggcgga aagagccagc ctacaggaca
     1201 tcaattggac actgaaagca gggcaaactg taggtatcgt tgggaaaact ggttcgggaa
     1261 aaacgacctt ggttcgccaa ttcttacgcc agtatccgat tggtcaggga aattttttca
     1321 tcaatcatca atctgtttta gactttaaac gttctagtat agaggaaaaa attggctatg
     1381 ttccccaaga acacattttg ttttcaaggt ctgttggaga aaatattgcc cttgggaaag
     1441 tagctagtag ctctgaggag attgaacaag ccattgccac agcagctttt agtcaagatt
     1501 taaaacggat gactgatggt cttgatacca tgattggtga gcgtggtgtg tctatttctg
     1561 gcggtcagaa acaacggatt tccattgccc gtgctttcct gcgagagcca gatttgctga
     1621 ttctagatga ttctttgtcg gcagtggatg ctaggacaga acgccagatt atccaaaata
     1681 ttcaaaaaga acgtgcaggc aaaaccaatg tcatcgtgac ccatcgtcta tctgctgtca
     1741 accatgcaga ctgggtacta gtcttggatg aggggcgtat cgttgaggaa gggcgtccag
     1801 ctgatttgct tgcccaaaga ggttggtact atgaacaata ccaacgacaa caaagtcagg
     1861 aaggaggaga gtaatgacta ttttaggttt tttattaaaa caaatccgtc gtgttaagtg
     1921 gctatttata gtagctgtcg gcttctatct attggcttcg accatggttc gattggctcc
     1981 tctactgatt cagcaggcga ttgatgggcc gattacggat ttgagcaagg gtttgccttt
     2041 tgatgaagct gttttcttaa accagtcagc tcaatacatg ggaatgatta ttctgggagc
     2101 tattggcttc tacttatcta tgcgtctact catgcattgc gccaatcgta ttgctgaaaa
     2161 tctacgtaat caagcttatg atgttatgca acggttgcct atttcttatt ttgatgataa
     2221 gcccgctgga aaaattgcaa ctagaattgt caatgataca gaaactctgc ggacacaatt
     2281 ttatgggacc ttagttaatg cctttaacaa tattgttcgt ttgctcttta catacggtgt
     2341 cctattttac atgaatagga gtcttggttg gctgatgtta ctcttgatac cactctatat
     2401 cggtattcaa tttgcttaca agaaaatgac agacaagccg atgaaggatt tttatgatgc
     2461 aaggagtgac gtcaatacgc aggtgaatga gaccatgaat ggtgcaagtt tgattcaact
     2521 ttttggacaa gaagagcgca tcatgaaaga atttgaagtg actgctgaca agatgcgtcg
     2581 ggcagataat aagattatct gggcccagtc tcttgccacg tggaatctga gtggttttct
     2641 tcaaaatttg gtcattgctg cgattttaac ggtagtcggc tatcagtttc ttgcgggaca
     2701 gtatggagtt acagctggga aactctttgt ttatgtcaac tatatcgaag gagtcttcat
     2761 tgctttggga gcgctggttc aacagttccc aaatatgctt cgctcgtttg aaacaggtaa
     2821 gcgtctaatg gcccttctag aagaagaggt ggaggacgac tgtgatcgta ttttggaagt
     2881 tgaacaaggg caagtcgtgt ttgaacacgt gaactttagc tatgaagaaa acagaccagt
     2941 tttgaaagat attaccattc gggcagaaaa aggagaaaca gttgctctgg ttgggcatac
     3001 tgggtctggt aagtcttcta ttatgaacct cctctatcgt ttctatgatc cacaggaggg
     3061 acgtgtactg attgatggga aaaacatccg tgattattct cgtgagagcc tgcgcagtca
     3121 catggggatt gttttgcaag atccctatct ctttacaggg acgattgcta gcaatgtttc
     3181 catgaatgaa gaggaagcag atagaacaag aatcatgcag gcgttagaaa aagttggtgc
     3241 agggcctatg ctatctcgct tagagaaagg gattgatgaa ccggttgttg agaagggggc
     3301 ggccttttca agtggggaac gtcagttgat tgcctttgcg cggacactct actctgatcc
     3361 taaaattctg atattggatg aagcaacttc tcatattgat acggagacgg aagaaattat
     3421 ccaacatgct atggaagtgg tgaaagaagg tcggacaacc tttatcattg cccaccgact
     3481 ttctaccatt caaaatgcag accagattct tgtcttagat caaggccgaa ttattgaaca
     3541 tgggaagcat gaagaattgg ttgcacgtgg tggagtatat gctcaaatgc atgagattca
     3601 agcaaaggtg taataagcag ttaaaaattc caagctttgg ctggaatttt ttgctataat
     3661 tgactcatga aagccttaat ttttgatgta gatgatacgc tttatgatca gattcaaccg
     3721 tttgaacgtg ctttggaaag acacattgaa gtagcaaggg agcaaattga accactctac
     3781 ctttcctttc gcagatatgc ggatgaagta tttgaagcga cagcaattgg aaagatgagt
     3841 ctgaaagaca gtcatattta tcggatgaaa catgctttgg cagattttgg gtatcaggtg
     3901 tctgatgcaa cagccttagc tattcaaata gattatgatt attttcaagg gcagatagag
     3961 ctcagtccag tgtttccaga aatattttca tggtgtcagg cgcaaggaat tgcaatgggg
     4021 attattacga atggacctta tagacatcag ttgagaaaga tacgcacgat ggggttagtt
     4081 aattggtttg agctagaaca tgtcctaatt tctggacaag ttggtatcac aaagccaaat
     4141 cctgctattt ttcaactaat ggaagaacgt ttggggatgt caggcgaaga tatttgttat
     4201 ctaggggatt cgtttgaaaa tgatgtggta ggagcgaaag ctgcgaattg gaaggcaatt
     4261 tggtttaatc atagaaagag agtagagcca acagctccgt atcaggcaga taaagtggtg
     4321 acagattggg atgaactggt cgaagttatc cagtctttct agtggtttct acaagggatt
     4381 atcaattttt tataggtgtg ataggtaaaa tatattagca ggatgcctgt ctttatgata
     4441 gtataaaatg caagcataga agtataggtg tgaatccaag cagattttta ttcctactct
     4501 atgaaatttt ttgaaatgga gttacctatg acacaagctt tctttcctat ccatactcta
     4561 gagactgtta gtccagaatt acgagaaaac cttgcgactg tcaagaaaaa taatggcggt
     4621 tatattccta atctcatcgg tcttttagcc aattctccta cagccctaga aacctaccaa
     4681 actgttagtg gtatcaatcg ccgtagtagt ctgaatccga cggagcgtga agtggtacaa
     4741 attacagctg ccgttgccaa tggctgtgga ttttgcgtgg caggtcatac ggctatttct
     4801 atcaagcagg ttaagatgcc tgatgttatt ctacaggctc tacgccaggg aactcccatc
     4861 gaaacggatg caaaattgga tgctctcgct cgatttactc tggctgttat ccatgaaaaa
     4921 ggcaaggttg aacagccctt gctagaggaa tttttccaag agggctacac ggctgaaaat
     4981 gccttggatg tggtgttagg agtcagtctt gcaactcttt gtaattatgc caacaatctc
     5041 atcaacactc ctatcaatcc agaattacag gcctatgctc tgtaggagtt ccagcagaat
     5101 atgtatcgca aactagttag gacgtttaca ttatcctaac tagttttttt gaattaacca
     5161 agtgtgattt tcctaatata catttgatac tcttcgaaaa tcaaaattat ccgttgtcaa
     5221 cttgcc
//
